Citrus Sinensis ID: 011856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| Q85WB7 | 473 | Glutamate-1-semialdehyde | N/A | no | 0.991 | 0.997 | 0.832 | 0.0 | |
| Q42522 | 472 | Glutamate-1-semialdehyde | yes | no | 0.991 | 1.0 | 0.839 | 0.0 | |
| P42799 | 474 | Glutamate-1-semialdehyde | no | no | 0.993 | 0.997 | 0.822 | 0.0 | |
| P31593 | 478 | Glutamate-1-semialdehyde | N/A | no | 0.966 | 0.962 | 0.829 | 0.0 | |
| Q40147 | 481 | Glutamate-1-semialdehyde | N/A | no | 0.966 | 0.956 | 0.813 | 0.0 | |
| P45621 | 466 | Glutamate-1-semialdehyde | yes | no | 0.951 | 0.972 | 0.825 | 0.0 | |
| Q6YZE2 | 478 | Glutamate-1-semialdehyde | yes | no | 0.943 | 0.939 | 0.808 | 0.0 | |
| P18492 | 469 | Glutamate-1-semialdehyde | N/A | no | 0.939 | 0.953 | 0.804 | 0.0 | |
| B2J7M9 | 432 | Glutamate-1-semialdehyde | yes | no | 0.890 | 0.981 | 0.739 | 0.0 | |
| B1X023 | 433 | Glutamate-1-semialdehyde | yes | no | 0.880 | 0.967 | 0.739 | 0.0 |
| >sp|Q85WB7|GSA_BRANA Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/473 (83%), Positives = 437/473 (92%), Gaps = 1/473 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSP-STRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+V R
Sbjct: 420 KSDTEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGR 472
|
Brassica napus (taxid: 3708) EC: 5EC: .EC: 4EC: .EC: 3EC: .EC: 8 |
| >sp|Q42522|GSA2_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/474 (83%), Positives = 433/474 (91%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG SCS+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKV R
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P42799|GSA1_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/473 (82%), Positives = 432/473 (91%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RC +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+V R
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSR 473
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/469 (82%), Positives = 421/469 (89%), Gaps = 9/469 (1%)
Query: 11 GLGLSCSSKLTN----RFSSSAGSSRCS-----VKMSVSVEEQRKNFTLKKSEEAFNVAK 61
G+G+S SKLT + S RC+ +KM+ SV+E++K FTL+KSEEAF+ AK
Sbjct: 6 GVGISWPSKLTQGQRPKLVFSPSPRRCTPSSSTIKMTASVDEKKKTFTLQKSEEAFSKAK 65
Query: 62 ELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVL 121
ELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VL
Sbjct: 66 ELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVL 125
Query: 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 181
AAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR
Sbjct: 126 AALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 185
Query: 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241
+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+LFE
Sbjct: 186 PKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVESLFE 245
Query: 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 301
+KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQE
Sbjct: 246 EHKGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQE 305
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
YFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL
Sbjct: 306 YFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 365
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421
KRL+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF DAKK
Sbjct: 366 KRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSDAKK 425
Query: 422 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
S+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKV
Sbjct: 426 SDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKV 474
|
Nicotiana tabacum (taxid: 4097) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q40147|GSA_SOLLC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/472 (81%), Positives = 422/472 (89%), Gaps = 12/472 (2%)
Query: 11 GLGLSCSSKLT------------NRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFN 58
G+GLS SKLT +R + + SS +++M+ SV+E++K FTL+KSEEAF+
Sbjct: 6 GVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSATIRMTASVDEKKKTFTLEKSEEAFS 65
Query: 59 VAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD 118
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD
Sbjct: 66 KAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADD 125
Query: 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 126 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 185
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238
T R +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+
Sbjct: 186 TCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVES 245
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298
LFE +KGEIAA+ILEPVVGN+GFI PK +FL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 246 LFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGG 305
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 306 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 365
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 418
HTLKRL+ GTYE+L+KIT ELTQGI+DAGKK GHA+CGG I GMFGFFF +GP+YNF D
Sbjct: 366 HTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSD 425
Query: 419 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ T+ AAEKV
Sbjct: 426 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKV 477
|
Solanum lycopersicum (taxid: 4081) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/454 (82%), Positives = 410/454 (90%), Gaps = 1/454 (0%)
Query: 18 SKLTNRFSSSAGSSRCSVKMSVSVEEQRKN-FTLKKSEEAFNVAKELMPGGVNSPVRAFK 76
++LT S S+ + +V M+VS++ + N TL KSEEAF AKELMPGGVNSPVRAFK
Sbjct: 9 ARLTLGMSLSSSTRSRTVAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFK 68
Query: 77 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 136
SVGGQPIV DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA
Sbjct: 69 SVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 128
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
PCLLEN LAE+VI AVPSIEMVRFVNSGTEACMG LRLARA+TGRE+IIKFEGCYHGHAD
Sbjct: 129 PCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAYTGREKIIKFEGCYHGHAD 188
Query: 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256
PFLVKAGSGVATLGLPDSPGVPK AT+ETLTAP+ND A+E LFE NKGEIAA+ LEPVV
Sbjct: 189 PFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTEAIEKLFEANKGEIAAVFLEPVV 248
Query: 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII 316
GN+GFI PKPDF + +R+ITKEN LL+FDEVMTGFRL+YGGAQEYFG+TPD+TTLGKII
Sbjct: 249 GNAGFIVPKPDFHSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKII 308
Query: 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TL+R+KEPGTYEYL+KI
Sbjct: 309 GGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIETLQRIKEPGTYEYLDKI 368
Query: 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436
TGEL +GII+AGK+AGHAICGG+I GMFGFFFTEGPVYNF DAKKS+T KFARF+ GML
Sbjct: 369 TGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSDTAKFARFFWGMLA 428
Query: 437 EGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV
Sbjct: 429 EGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKV 462
|
Glycine max (taxid: 3847) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q6YZE2|GSA_ORYSJ Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/449 (80%), Positives = 405/449 (90%)
Query: 26 SSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVF 85
S A + R V+ ++SVE+ K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVF
Sbjct: 30 SRARAPRSVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVF 89
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
DSVKGS MWD+DGNEYIDYVGSWGPAIIGHADD V AAL ET+KKGTSFGAPC+LENVLA
Sbjct: 90 DSVKGSRMWDVDGNEYIDYVGSWGPAIIGHADDTVNAALIETLKKGTSFGAPCVLENVLA 149
Query: 146 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205
EMVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+KFEGCYHGHAD FLVKAGSG
Sbjct: 150 EMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHADSFLVKAGSG 209
Query: 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265
VATLGLPDSPGVPKGAT ETLTAP+NDV A++ LFE NKG+IAA+ LEPVVGN+GFI P+
Sbjct: 210 VATLGLPDSPGVPKGATSETLTAPYNDVEAVKKLFEENKGQIAAVFLEPVVGNAGFIPPQ 269
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 325
P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYFG+TPD++TLGKIIGGGLPVGAY
Sbjct: 270 PGFLNALRDLTKQDGALLVFDEVMTGFRLAYGGAQEYFGITPDVSTLGKIIGGGLPVGAY 329
Query: 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
GGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTY+YL+KITG+L +G++
Sbjct: 330 GGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYDYLDKITGDLVRGVL 389
Query: 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445
DAG K GH +CGG+I GMFGFFFT GPV+NF DAKKS+T KF RFYRGMLEEGVY APSQ
Sbjct: 390 DAGAKTGHEMCGGHIRGMFGFFFTAGPVHNFGDAKKSDTAKFGRFYRGMLEEGVYLAPSQ 449
Query: 446 FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474
FEAGFTSLAH+S DI+ T+ AA KV R
Sbjct: 450 FEAGFTSLAHTSQDIEKTVEAAAKVLRRI 478
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P18492|GSA_HORVU Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/450 (80%), Positives = 407/450 (90%), Gaps = 3/450 (0%)
Query: 26 SSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVF 85
S A SR V+ +VS++E K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVF
Sbjct: 23 SRAPRSRSVVRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVF 80
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
DSVKGSHMWD+DGNEYIDYVGSWGPAIIGHADD+V AAL ET+KKGTSFGAPC LENVLA
Sbjct: 81 DSVKGSHMWDVDGNEYIDYVGSWGPAIIGHADDKVNAALIETLKKGTSFGAPCALENVLA 140
Query: 146 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205
+MVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+KFEGCYHGHAD FLVKAGSG
Sbjct: 141 QMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHADSFLVKAGSG 200
Query: 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265
VATLGLPDSPGVPKGAT TLTAP+ND A++ LFE+NKGEIAA+ LEPVVGN+GFI P+
Sbjct: 201 VATLGLPDSPGVPKGATVGTLTAPYNDADAVKKLFEDNKGEIAAVFLEPVVGNAGFIPPQ 260
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 325
P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYFG+TPD+TTLGKIIGGGLPVGAY
Sbjct: 261 PAFLNALREVTKQDGALLVFDEVMTGFRLAYGGAQEYFGITPDVTTLGKIIGGGLPVGAY 320
Query: 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
GGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTYEYL+K+TGEL +GI+
Sbjct: 321 GGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYEYLDKVTGELVRGIL 380
Query: 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445
D G K GH +CGG+I GMFGFFF GPV+NF+DAKKS+T KF RF+RGML EGVY APSQ
Sbjct: 381 DVGAKTGHEMCGGHIRGMFGFFFAGGPVHNFDDAKKSDTAKFGRFHRGMLGEGVYLAPSQ 440
Query: 446 FEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475
FEAGFTSLAH++ DI+ T+ AAEKV +R++
Sbjct: 441 FEAGFTSLAHTTQDIEKTVEAAEKV-LRWI 469
|
Hordeum vulgare (taxid: 4513) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B2J7M9|GSA_NOSP7 Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/426 (73%), Positives = 361/426 (84%), Gaps = 2/426 (0%)
Query: 47 NFTLK--KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDY 104
N T+K KS+E F A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDY
Sbjct: 3 NTTIKTTKSQEVFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDY 62
Query: 105 VGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSG 164
VG+WGPAI GHA +V+AAL E ++KGTSFGAP LENVLAEMVI AVPSIEMVRFVNSG
Sbjct: 63 VGTWGPAICGHAHPEVIAALHEALEKGTSFGAPSTLENVLAEMVIDAVPSIEMVRFVNSG 122
Query: 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE 224
TEACMGVLRL RAFT R++IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT
Sbjct: 123 TEACMGVLRLMRAFTNRDKIIKFEGCYHGHADTFLVKAGSGVATLGLPDSPGVPKAATST 182
Query: 225 TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 284
TLTAP+ND+ +++ LFE N+ EIA +ILEPVVGN+GFIAP FL +R +T E GALL+
Sbjct: 183 TLTAPYNDLESVKALFEENRDEIAGVILEPVVGNAGFIAPDAGFLEGLRELTHEYGALLV 242
Query: 285 FDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQA 344
FDEVMTGFR+AYGGAQE FGVTPDLTTLGK+IGGGLPVGAYGGRRDIM MVAPAGP+YQA
Sbjct: 243 FDEVMTGFRIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRRDIMSMVAPAGPVYQA 302
Query: 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404
GTLSGNPLAMTAGI TL+ L++PGTY+YL +IT +L G++ K+ GH CGG IS MF
Sbjct: 303 GTLSGNPLAMTAGIKTLELLQKPGTYDYLERITKKLADGLLQIAKETGHTACGGQISAMF 362
Query: 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTI 464
G FFT GPV+N+EDAKKS+T KF RF+RGMLE GVY APSQFEAGFTS AH+ +DI T+
Sbjct: 363 GLFFTSGPVHNYEDAKKSDTAKFGRFHRGMLERGVYLAPSQFEAGFTSFAHTEEDIDQTL 422
Query: 465 TAAEKV 470
A V
Sbjct: 423 AIARDV 428
|
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B1X023|GSA_CYAA5 Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/419 (73%), Positives = 362/419 (86%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE+ F A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPA
Sbjct: 11 KSEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPA 70
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I GHA +V+AAL + + +GTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACM V
Sbjct: 71 ICGHAHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEACMSV 130
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
LRL RAFTGR++IIKF+GCYHGHAD FLV+AGSGVATLGLPDSPGVPK T TLTAP+N
Sbjct: 131 LRLMRAFTGRDKIIKFQGCYHGHADMFLVQAGSGVATLGLPDSPGVPKTTTANTLTAPYN 190
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ A++ LF N EIA +ILEPVVGNSGF+ P FL +R +T E GALL+FDEVMTG
Sbjct: 191 DLEAVKALFAENPDEIAGVILEPVVGNSGFVVPDGGFLQGLRELTNEYGALLVFDEVMTG 250
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FRL+YGGAQE FGVTPDLTTLGK+IGGGLPVGAYGGR+DIM MVAPAGPMYQAGTLSGNP
Sbjct: 251 FRLSYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRKDIMSMVAPAGPMYQAGTLSGNP 310
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAMTAGI TL+ L++PGTY L +IT +L++G++ K+AGH +CGGYI MFG FFTEG
Sbjct: 311 LAMTAGIKTLELLQKPGTYNQLEQITQQLSEGLLKIAKEAGHQVCGGYIGAMFGLFFTEG 370
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
PV N++DAKKS+ KF RF+RGMLE+GVY APSQFEAGFTSLAH+S+DI+ T+ AA+ V
Sbjct: 371 PVRNYDDAKKSDLAKFGRFHRGMLEKGVYLAPSQFEAGFTSLAHTSEDIEKTLAAAKDV 429
|
Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | ||||||
| 224134068 | 479 | predicted protein [Populus trichocarpa] | 0.987 | 0.981 | 0.861 | 0.0 | |
| 255571784 | 473 | glutamate-1-semialdehyde 2,1-aminomutase | 0.947 | 0.953 | 0.881 | 0.0 | |
| 449438260 | 471 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.978 | 0.989 | 0.859 | 0.0 | |
| 307136451 | 471 | glutamate-1-semialdehyde 21-aminomutase | 0.978 | 0.989 | 0.853 | 0.0 | |
| 75149864 | 473 | RecName: Full=Glutamate-1-semialdehyde 2 | 0.991 | 0.997 | 0.832 | 0.0 | |
| 15229018 | 472 | glutamate-1-semialdehyde 2,1-aminomutase | 0.991 | 1.0 | 0.839 | 0.0 | |
| 28972463 | 473 | glutamate 1-semialdehyde aminotransferas | 0.991 | 0.997 | 0.826 | 0.0 | |
| 15242822 | 474 | glutamate-1-semialdehyde-2,1-aminomutase | 0.993 | 0.997 | 0.822 | 0.0 | |
| 498914 | 472 | glutamate-1-semialdehyde aminotransferas | 0.991 | 1.0 | 0.835 | 0.0 | |
| 225456404 | 473 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.915 | 0.921 | 0.885 | 0.0 |
| >gi|224134068|ref|XP_002321728.1| predicted protein [Populus trichocarpa] gi|222868724|gb|EEF05855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/475 (86%), Positives = 444/475 (93%), Gaps = 5/475 (1%)
Query: 1 MAATITGVGVGLGLSCSS--KLTN-RFSSSAGSSRCSVKMSVSVEEQRK--NFTLKKSEE 55
MA+TITGV VGLGLSCS+ KLT R SS+ S CS+KM+VSVEE++K +FTL+KSEE
Sbjct: 1 MASTITGVSVGLGLSCSTTRKLTQKRNPSSSRLSFCSIKMAVSVEEEKKKKSFTLEKSEE 60
Query: 56 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH 115
AF+ AKE+MPGGVNSPVRAFKSVGGQPIVFDSVKGSHM DIDGN+YIDYVGSWGPAIIGH
Sbjct: 61 AFSAAKEMMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMRDIDGNDYIDYVGSWGPAIIGH 120
Query: 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 175
ADD+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRLA
Sbjct: 121 ADDEVLAALSETMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGVLRLA 180
Query: 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235
RA+TGRE+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAP+ND++A
Sbjct: 181 RAYTGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDIAA 240
Query: 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295
+ENLFENNKGEI IILEPVVGN+GFI PKP+F+NAIRRIT+EN ALLIFDEVMTGFRL+
Sbjct: 241 VENLFENNKGEICGIILEPVVGNAGFIPPKPEFINAIRRITEENNALLIFDEVMTGFRLS 300
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355
YGGAQEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMT
Sbjct: 301 YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMT 360
Query: 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415
AGIHTLKRL++PG+YEYL+KIT EL QGIIDAGKK GHAICGGYI GMFGFFFTEGPVYN
Sbjct: 361 AGIHTLKRLQKPGSYEYLDKITSELVQGIIDAGKKTGHAICGGYIRGMFGFFFTEGPVYN 420
Query: 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
F DAKKS+T KFARFY+GML EGVYFAPSQFEAGFTSLAH+++DIQ TI AAE V
Sbjct: 421 FADAKKSDTAKFARFYQGMLREGVYFAPSQFEAGFTSLAHTAEDIQKTIAAAENV 475
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571784|ref|XP_002526835.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] gi|223533839|gb|EEF35570.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/457 (88%), Positives = 432/457 (94%), Gaps = 6/457 (1%)
Query: 15 SCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVR 73
SC++ S +SRCS +KM+VSVEE++KNFTLKKSEEAFNVAKELMPGGVNSPVR
Sbjct: 18 SCTN-----LSQRRPTSRCSSIKMAVSVEEEKKNFTLKKSEEAFNVAKELMPGGVNSPVR 72
Query: 74 AFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133
AFKSVGGQPIV DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL ETMKKGTS
Sbjct: 73 AFKSVGGQPIVMDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALAETMKKGTS 132
Query: 134 FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
FGAPCLLENVLAEMVI AVP IEMVRFVNSGTEACMGVLRLARAFTG+E++IKFEGCYHG
Sbjct: 133 FGAPCLLENVLAEMVIKAVPCIEMVRFVNSGTEACMGVLRLARAFTGQEKLIKFEGCYHG 192
Query: 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
HADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAPFND++A+E LFE NKGEIAAIILE
Sbjct: 193 HADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPFNDIAAVEKLFEANKGEIAAIILE 252
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG 313
PVVGNSGFI PKPDFLNAIRRITKEN ALLIFDEVMTGFRL+YGGAQEYFG+TPDL+TLG
Sbjct: 253 PVVGNSGFIPPKPDFLNAIRRITKENNALLIFDEVMTGFRLSYGGAQEYFGITPDLSTLG 312
Query: 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
KIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL+EPG+YEYL
Sbjct: 313 KIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQEPGSYEYL 372
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
+KITGEL QGI+DAGKKAGHA+CGG+ISGMFGFFFTEGPVYNF DAKKS+T KFARFY+G
Sbjct: 373 DKITGELIQGILDAGKKAGHAMCGGHISGMFGFFFTEGPVYNFSDAKKSDTAKFARFYQG 432
Query: 434 MLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
MLEEGVYFAPSQFEAGFTSLAH+++DIQ TI AAEKV
Sbjct: 433 MLEEGVYFAPSQFEAGFTSLAHTTEDIQRTIKAAEKV 469
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438260|ref|XP_004136907.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] gi|449527822|ref|XP_004170908.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/471 (85%), Positives = 445/471 (94%), Gaps = 5/471 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNV 59
MA + G VG+GL CS+KL++ ++++ S R S VKM+V+++E++K FTLKKSEEAFN
Sbjct: 1 MAGSFAG-SVGIGLPCSTKLSH--TTTSRSFRFSRVKMAVTLDEKKK-FTLKKSEEAFNA 56
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+
Sbjct: 57 AKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDE 116
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 117 VLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 176
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
G+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAPFND+SA+E++
Sbjct: 177 GKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPFNDISAVESI 236
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
F NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGA
Sbjct: 237 FNANKGEIAAIILEPVVGNSGFIAPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGA 296
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
QEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIH
Sbjct: 297 QEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 356
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419
TLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAICGGYI+GMFGFFFT+GPVYNFEDA
Sbjct: 357 TLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAICGGYINGMFGFFFTDGPVYNFEDA 416
Query: 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
KKS+T KF RFYRGMLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV
Sbjct: 417 KKSDTAKFGRFYRGMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKV 467
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136451|gb|ADN34256.1| glutamate-1-semialdehyde 21-aminomutase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/471 (85%), Positives = 442/471 (93%), Gaps = 5/471 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNV 59
MA + G VG+GL CS+KL++ ++++ SSRC VKM+V+++E +KNFTLKKSEEAFN
Sbjct: 1 MAGSFAG-SVGIGLPCSTKLSH--TTTSRSSRCHRVKMAVTLDE-KKNFTLKKSEEAFNA 56
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+
Sbjct: 57 AKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDE 116
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 117 VLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 176
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
G+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND+SA+E++
Sbjct: 177 GKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPFNDLSAVESI 236
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
F NKGEIAAIILEPVVGNSGFI PKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGA
Sbjct: 237 FNANKGEIAAIILEPVVGNSGFIPPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGA 296
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
QEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIH
Sbjct: 297 QEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 356
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419
TLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAI GGYI+GMFGFFFT+GPV+NFEDA
Sbjct: 357 TLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAISGGYINGMFGFFFTDGPVHNFEDA 416
Query: 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
KKS+T KF RFYR MLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV
Sbjct: 417 KKSDTAKFGRFYRAMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKV 467
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75149864|sp|Q85WB7.1|GSA_BRANA RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT; Flags: Precursor gi|28972461|gb|AAO63782.1|AF364595_1 glutamate 1-semialdehyde aminotransferase enzyme [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/473 (83%), Positives = 437/473 (92%), Gaps = 1/473 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSP-STRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+V R
Sbjct: 420 KSDTEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGR 472
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229018|ref|NP_190442.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] gi|14195661|sp|Q42522.2|GSA2_ARATH RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic; Short=GSA 2; AltName: Full=Glutamate-1-semialdehyde aminotransferase 2; Short=GSA-AT 2; Flags: Precursor gi|6523104|emb|CAB62362.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|95147290|gb|ABF57280.1| At3g48730 [Arabidopsis thaliana] gi|110738531|dbj|BAF01191.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|332644929|gb|AEE78450.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/474 (83%), Positives = 433/474 (91%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG SCS+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKV R
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28972463|gb|AAO63783.1|AF366293_1 glutamate 1-semialdehyde aminotransferase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/473 (82%), Positives = 437/473 (92%), Gaps = 1/473 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK+ R S S+ S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKIPKRVSPSS-SNRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K+LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KDLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P +F+N +R+++++NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTLEFINGLRQLSRDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+++D+Q TI AAE+V R
Sbjct: 420 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTTEDVQFTIAAAERVLGR 472
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242822|ref|NP_201162.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] gi|1170028|sp|P42799.1|GSA1_ARATH RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic; Short=GSA 1; AltName: Full=Glutamate-1-semialdehyde aminotransferase 1; Short=GSA-AT 1; Flags: Precursor gi|454357|gb|AAA19117.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] gi|10177038|dbj|BAB10450.1| glutamate-1-semialdehyde 2,1-aminomutase 1 precursor (GSA 1) (glutamate-1-semialdehyde aminotransferase 1) (GSA-AT 1) [Arabidopsis thaliana] gi|20856673|gb|AAM26679.1| AT5g63570/MBK5_3 [Arabidopsis thaliana] gi|22655038|gb|AAM98110.1| At5g63570/MBK5_3 [Arabidopsis thaliana] gi|332010387|gb|AED97770.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/473 (82%), Positives = 432/473 (91%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RC +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+V R
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSR 473
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|498914|gb|AAA79123.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/474 (83%), Positives = 430/474 (90%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG S S+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSSSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHAKSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLI DEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLILDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKV R
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456404|ref|XP_002284200.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Vitis vinifera] gi|147861754|emb|CAN83169.1| hypothetical protein VITISV_021914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/436 (88%), Positives = 421/436 (96%)
Query: 35 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMW 94
VKM+VSV+E++K+FTL+KSEEAF +AKELMPGGVNSPVRAFKSVGGQPI+FDSVKGSHMW
Sbjct: 34 VKMAVSVDEKKKSFTLRKSEEAFEIAKELMPGGVNSPVRAFKSVGGQPILFDSVKGSHMW 93
Query: 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS 154
DIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN+LAEMVISAVPS
Sbjct: 94 DIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENILAEMVISAVPS 153
Query: 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214
IEMVRFVNSGTEACMG+LRLARAFTG+E+IIKFEGCYHGHADPFLVKAGSGVATLGLPDS
Sbjct: 154 IEMVRFVNSGTEACMGMLRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 213
Query: 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274
PGVP+ AT+ETLT+PFND+S +E LFE NKGEIAA+ILEPVVGNSGFIAPKPDFLNA++
Sbjct: 214 PGVPRAATFETLTSPFNDLSTVEKLFEANKGEIAAVILEPVVGNSGFIAPKPDFLNALQE 273
Query: 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 334
ITKENGALL+FDEVMTGFR++YGGAQEYFG+TPD+TTLGKIIGGGLPVGAYGGRR+IME+
Sbjct: 274 ITKENGALLVFDEVMTGFRISYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRREIMEL 333
Query: 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
VAPAGPMYQAGTLSGNPLAMTAGI TLKRLKEPG+YEYL+KITGEL QGI+DAGKKAGHA
Sbjct: 334 VAPAGPMYQAGTLSGNPLAMTAGIQTLKRLKEPGSYEYLDKITGELIQGILDAGKKAGHA 393
Query: 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA 454
ICGGYISGMFGFFFTEGPVYNF DAK S+T KFARF+RGMLEEGVYFAPSQFEAGFTSLA
Sbjct: 394 ICGGYISGMFGFFFTEGPVYNFGDAKNSDTAKFARFFRGMLEEGVYFAPSQFEAGFTSLA 453
Query: 455 HSSDDIQHTITAAEKV 470
H+ +DIQ TI AAEKV
Sbjct: 454 HTPEDIQQTIAAAEKV 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | ||||||
| TAIR|locus:2114520 | 472 | GSA2 "glutamate-1-semialdehyde | 0.989 | 0.997 | 0.797 | 4.4e-203 | |
| TAIR|locus:2160554 | 474 | GSA1 ""glutamate-1-semialdehyd | 0.993 | 0.997 | 0.775 | 9.4e-201 | |
| TIGR_CMR|CHY_1212 | 432 | CHY_1212 "glutamate-1-semialde | 0.882 | 0.972 | 0.569 | 2.1e-125 | |
| TIGR_CMR|GSU_0337 | 427 | GSU_0337 "glutamate-1-semialde | 0.873 | 0.974 | 0.552 | 2e-120 | |
| TIGR_CMR|BA_4693 | 429 | BA_4693 "glutamate-1-semialdeh | 0.869 | 0.965 | 0.563 | 8.5e-120 | |
| UNIPROTKB|P23893 | 426 | hemL "glutamate-1-semialdehyde | 0.884 | 0.988 | 0.518 | 1.3e-118 | |
| TIGR_CMR|SO_1300 | 430 | SO_1300 "glutamate-1-semialdeh | 0.890 | 0.986 | 0.515 | 5e-115 | |
| UNIPROTKB|Q9KU97 | 432 | hemL "Glutamate-1-semialdehyde | 0.882 | 0.972 | 0.515 | 7.6e-112 | |
| TIGR_CMR|VC_0626 | 432 | VC_0626 "glutamate-1-semialdeh | 0.882 | 0.972 | 0.515 | 7.6e-112 | |
| TIGR_CMR|CPS_4629 | 427 | CPS_4629 "glutamate-1-semialde | 0.882 | 0.983 | 0.481 | 2.6e-109 |
| TAIR|locus:2114520 GSA2 "glutamate-1-semialdehyde 2,1-aminomutase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 377/473 (79%), Positives = 410/473 (86%)
Query: 1 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+T SCS+K + R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKR--ASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKV R
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSR 471
|
|
| TAIR|locus:2160554 GSA1 ""glutamate-1-semialdehyde-2,1-aminomutase"" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
Identities = 367/473 (77%), Positives = 409/473 (86%)
Query: 1 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+T SCSSK++ R +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+V R
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSR 473
|
|
| TIGR_CMR|CHY_1212 CHY_1212 "glutamate-1-semialdehyde-2,1-aminomutase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 239/420 (56%), Positives = 299/420 (71%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ +S EAF+ AK+++PGGVNSPVRAFKSVG P+ + +GS ++DIDGN YIDYVGSWG
Sbjct: 5 IDRSIEAFSEAKKVIPGGVNSPVRAFKSVGLNPVFIERGEGSKIYDIDGNCYIDYVGSWG 64
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH +V AL +KKGTSFGAP LLE +AE++++A P+++MVR VNSGTEA M
Sbjct: 65 PLILGHRHPKVEEALANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEATM 124
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FTGR +I+KFEGCYHGHAD L+KAGSG TLG+P SPGVP T+TA
Sbjct: 125 SAIRLARGFTGRNKIVKFEGCYHGHADSLLIKAGSGALTLGVPTSPGVPANIANNTITAQ 184
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND++ LE +F +IAA+ILEPV GN G + PKP FL +R +T++ GALLI DEVM
Sbjct: 185 FNDLALLEEIFAQEGNDIAAVILEPVAGNMGVVPPKPGFLEGVRELTRKYGALLIMDEVM 244
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+ +GGAQ + V PD PVGAYGGRR+IMEMVAPAGP+YQAGTLSG
Sbjct: 245 TGFRVHWGGAQVLYNVEPDITTLGKIIGGGLPVGAYGGRREIMEMVAPAGPVYQAGTLSG 304
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NPLAMTAGI TL LKE G YE L + + L G+ +A + AG + + M FFT
Sbjct: 305 NPLAMTAGIATLTVLKEEGVYEQLEEKSSYLESGLKEAARAAGLKLWFNRVGSMLCTFFT 364
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
V +++ A S+T KFA F++ +LE G+Y APSQFEA F SLAHS DD+ TI A+ K
Sbjct: 365 SEEVVDYKTACTSDTQKFAVFFKTLLENGIYIAPSQFEAMFVSLAHSKDDLDKTIEASYK 424
|
|
| TIGR_CMR|GSU_0337 GSU_0337 "glutamate-1-semialdehyde-2,1-aminomutase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 230/416 (55%), Positives = 286/416 (68%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
+S++ F A+E +PGGVNSPVRAFKSVG P+ G + D D N YIDYVGSWGP
Sbjct: 5 RSKDLFTQAQEFIPGGVNSPVRAFKSVGADPLFIKKAFGCTITDADNNSYIDYVGSWGPM 64
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GH QV+ A+ ++ G+SFGAP LE LA MVI AVPSIEMVR V+SGTEA M
Sbjct: 65 ILGHCHPQVVEAVKRAVESGSSFGAPTELEITLARMVIDAVPSIEMVRMVSSGTEATMSA 124
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLAR +TGR++IIKF GCYHGHAD LVKAGSG AT G+PDSPGVP TLTA FN
Sbjct: 125 IRLARGYTGRDKIIKFSGCYHGHADALLVKAGSGAATFGVPDSPGVPVDVAKNTLTAQFN 184
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ++ L + NK EIA II+EP+ GN G + P FL +R I G +LIFDEVMTG
Sbjct: 185 DLDSVSKLIDENKNEIACIIVEPIAGNMGTVPPGEGFLEGLRSICDSEGIVLIFDEVMTG 244
Query: 292 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+AYGGAQE +GVTPD PVGA+GG++DIM++++P+G +YQAGTLSGNP
Sbjct: 245 FRVAYGGAQELYGVTPDMTTLGKIIGGGLPVGAFGGKKDIMKLLSPSGGVYQAGTLSGNP 304
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAMTAGI TLK L+ G YE L + + L +GI +A K AG+ I + MF FFT
Sbjct: 305 LAMTAGIETLKLLQADGFYEQLEQTSRRLAEGITEAAKSAGYPIYPTRVGSMFCTFFTSN 364
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
V ++ A +T FA F+R MLE+G+Y APSQFE F S+AH+ +I+ TI AA
Sbjct: 365 EVKDWPTATTCDTKAFAAFFRMMLEKGIYLAPSQFETAFVSIAHTEVEIEKTIVAA 420
|
|
| TIGR_CMR|BA_4693 BA_4693 "glutamate-1-semialdehyde-2,1-aminomutase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 236/419 (56%), Positives = 290/419 (69%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KS AF A++LMPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP
Sbjct: 6 KSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPL 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M
Sbjct: 66 IHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSA 125
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +N
Sbjct: 126 LRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN 185
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTG
Sbjct: 186 DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTG 245
Query: 292 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+AY Q Y+GVTPD PVGAYGG+ +IM VAP+GP+YQAGTLSGNP
Sbjct: 246 FRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNP 305
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYISGMFGFFFT 409
LAM AG TL +L P +Y + L G+ A +K G H I M G FFT
Sbjct: 306 LAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI--NRAGSMIGIFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
+ PV N++ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE
Sbjct: 363 DEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAE 421
|
|
| UNIPROTKB|P23893 hemL "glutamate-1-semialdehyde aminotransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 219/422 (51%), Positives = 293/422 (69%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSE ++ A+EL+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWG
Sbjct: 1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P ++GH + A+ E ++G SFGAP +E +A++V VP+++MVR VNSGTEA M
Sbjct: 61 PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FTGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT
Sbjct: 121 SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCT 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND++++ FE EIA II+EPV GN + P P+FL +R + E GALLI DEVM
Sbjct: 181 YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GAQ+Y+GV PD PVGA+GGRRD+M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L + +PG +E L+++T L +G+++A ++AG + ++ GMFG FFT
Sbjct: 301 NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT 360
Query: 410 EGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
+ V ++D + +F RF+ ML+EGVY APS FEAGF S+AHS +DI +TI AA
Sbjct: 361 DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR 420
Query: 469 KV 470
+V
Sbjct: 421 RV 422
|
|
| TIGR_CMR|SO_1300 SO_1300 "glutamate-1-semialdehyde-2,1-aminomutase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 219/425 (51%), Positives = 284/425 (66%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ +SE F AK+ +PGGVNSPVRAF VGG P+ + G++++D DG YIDYVGSWG
Sbjct: 1 MTRSEALFEQAKKTIPGGVNSPVRAFNGVGGSPLFIEKADGAYIYDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH ++ A+ + G SFGAP LE +AE VI+ VPSIE VR V+SGTEA M
Sbjct: 61 PMILGHNHPKIREAVLAAVHNGLSFGAPTELEVQMAEKVIAMVPSIEQVRMVSSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FT R++I+KFEGCYHGHAD LVKAGSG TLG P SPG+P+ TLTA
Sbjct: 121 SAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLGQPSSPGIPEDFAKHTLTAV 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND+ ++ +LFE EI+ II+EPV GN I P P FL +R + E GALLI DEVM
Sbjct: 181 YNDLDSVRSLFEQYPTEISCIIIEPVAGNMNCIPPIPGFLEGLRSLCDEFGALLIIDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR++ GAQ ++GVTPD PVGA+GGR+D+M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVSKSGAQGHYGVTPDLTTLGKVIGGGMPVGAFGGRKDVMQFIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM+AG+ ++ L E G YE L+ T + +G A K G + Y+ GMFGFFFT
Sbjct: 301 NPIAMSAGLAQMEALCEEGLYEALSAKTKRIAEGFKAAADKHGIPMAINYVGGMFGFFFT 360
Query: 410 EGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E + F+ K F FY GML+EGVY APS +EAGF S+AH ++++ T+ AA+
Sbjct: 361 EQEHITRFDQVTKCNIEHFRTFYHGMLDEGVYLAPSAYEAGFLSMAHGEEELRLTLEAAD 420
Query: 469 KVKMR 473
+V R
Sbjct: 421 RVLAR 425
|
|
| UNIPROTKB|Q9KU97 hemL "Glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 217/421 (51%), Positives = 274/421 (65%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KS E + A+ +PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWG
Sbjct: 1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 61 PMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTAR 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVM
Sbjct: 181 FNDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L L+E G + L T +L G + G + + GMFGFFFT
Sbjct: 301 NPIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFT 360
Query: 410 EGPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E +ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA+
Sbjct: 361 EQETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAAD 420
Query: 469 K 469
+
Sbjct: 421 R 421
|
|
| TIGR_CMR|VC_0626 VC_0626 "glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 217/421 (51%), Positives = 274/421 (65%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KS E + A+ +PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWG
Sbjct: 1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 61 PMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTAR 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVM
Sbjct: 181 FNDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L L+E G + L T +L G + G + + GMFGFFFT
Sbjct: 301 NPIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFT 360
Query: 410 EGPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E +ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA+
Sbjct: 361 EQETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAAD 420
Query: 469 K 469
+
Sbjct: 421 R 421
|
|
| TIGR_CMR|CPS_4629 CPS_4629 "glutamate-1-semialdehyde-2,1-aminomutase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 203/422 (48%), Positives = 280/422 (66%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSE+ F A++++PGGVNSPVRAF VGG P +G++++D D YIDYVGSWG
Sbjct: 1 MNKSEQLFEQAQKIIPGGVNSPVRAFNGVGGTPCFIKRAQGAYIYDADDKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH +L A+ T K G SFGAP +E +AE V VPS+E +R V+SGTEA M
Sbjct: 61 PMILGHNHPAILEAVITTAKNGLSFGAPTEIEITMAEKVRELVPSMESLRMVSSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++I+KFEGCYHGHAD LVKAGSG TLG+P+SPG+P+ TLT
Sbjct: 121 SAIRLARGYTGRDKILKFEGCYHGHADALLVKAGSGALTLGVPNSPGIPEDFAKHTLTVS 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+N++ ++ +F EIA II+EPV GN I P FL +R + + ++LIFDEVM
Sbjct: 181 YNNIDEVKEIFAKYADEIACIIVEPVAGNMNCIPPVEGFLEGLRDVCDQYSSVLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GG+++IM+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGKQEIMDYIAPVGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG+ +L L + ++ L+ T +L G+ A ++ G ++ Y+ MFGFFFT
Sbjct: 301 NPIAMAAGLASLTELAQGNKHQQLSSATEKLAMGLKAAAERNGVSLSVNYVGAMFGFFFT 360
Query: 410 E--GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
E P+ +E A + + F RF+ ML+EGVY APS +E GF S +H+ D I+ T+ AA
Sbjct: 361 EDKNPITTYEQATQCDGEMFKRFFHLMLDEGVYLAPSSYETGFLSTSHTDDIIEKTLVAA 420
Query: 468 EK 469
+K
Sbjct: 421 DK 422
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B7KA18 | GSA_CYAP7 | 5, ., 4, ., 3, ., 8 | 0.7240 | 0.8907 | 0.9792 | yes | no |
| B8HYK1 | GSA_CYAP4 | 5, ., 4, ., 3, ., 8 | 0.7287 | 0.8907 | 0.9814 | yes | no |
| Q2JMP7 | GSA_SYNJB | 5, ., 4, ., 3, ., 8 | 0.7028 | 0.8907 | 0.9724 | yes | no |
| A2C0U2 | GSA_PROM1 | 5, ., 4, ., 3, ., 8 | 0.7071 | 0.8823 | 0.9813 | yes | no |
| A2BVE5 | GSA_PROM5 | 5, ., 4, ., 3, ., 8 | 0.6800 | 0.8865 | 0.9745 | yes | no |
| Q55665 | GSA_SYNY3 | 5, ., 4, ., 3, ., 8 | 0.7163 | 0.8886 | 0.9769 | N/A | no |
| A5GUJ2 | GSA_SYNR3 | 5, ., 4, ., 3, ., 8 | 0.7036 | 0.8718 | 0.9562 | yes | no |
| P18492 | GSA_HORVU | 5, ., 4, ., 3, ., 8 | 0.8044 | 0.9390 | 0.9530 | N/A | no |
| P45621 | GSA_SOYBN | 5, ., 4, ., 3, ., 8 | 0.8259 | 0.9516 | 0.9721 | yes | no |
| A3PBK8 | GSA_PROM0 | 5, ., 4, ., 3, ., 8 | 0.6879 | 0.8844 | 0.9722 | yes | no |
| A5GMT2 | GSA_SYNPW | 5, ., 4, ., 3, ., 8 | 0.7036 | 0.8718 | 0.9584 | yes | no |
| Q46GT9 | GSA_PROMT | 5, ., 4, ., 3, ., 8 | 0.7095 | 0.8823 | 0.9722 | yes | no |
| Q7VDA1 | GSA_PROMA | 5, ., 4, ., 3, ., 8 | 0.6968 | 0.8802 | 0.9676 | yes | no |
| Q7V677 | GSA_PROMM | 5, ., 4, ., 3, ., 8 | 0.6939 | 0.8718 | 0.9696 | yes | no |
| Q39566 | GSA_CHLRE | 5, ., 4, ., 3, ., 8 | 0.6869 | 0.8991 | 0.9244 | N/A | no |
| A9BEA5 | GSA_PROM4 | 5, ., 4, ., 3, ., 8 | 0.6935 | 0.8844 | 0.9745 | yes | no |
| Q3AWP4 | GSA_SYNS9 | 5, ., 4, ., 3, ., 8 | 0.7084 | 0.8718 | 0.9696 | yes | no |
| Q7U598 | GSA_SYNPX | 5, ., 4, ., 3, ., 8 | 0.7060 | 0.8718 | 0.9696 | yes | no |
| B1XIT5 | GSA_SYNP2 | 5, ., 4, ., 3, ., 8 | 0.7446 | 0.8802 | 0.9699 | yes | no |
| Q0I8G1 | GSA_SYNS3 | 5, ., 4, ., 3, ., 8 | 0.7071 | 0.8823 | 0.9589 | yes | no |
| Q40147 | GSA_SOLLC | 5, ., 4, ., 3, ., 8 | 0.8135 | 0.9663 | 0.9563 | N/A | no |
| Q39QA6 | GSA_GEOMG | 5, ., 4, ., 3, ., 8 | 0.5855 | 0.8718 | 0.9718 | yes | no |
| P31593 | GSA_TOBAC | 5, ., 4, ., 3, ., 8 | 0.8294 | 0.9663 | 0.9623 | N/A | no |
| B1X023 | GSA_CYAA5 | 5, ., 4, ., 3, ., 8 | 0.7398 | 0.8802 | 0.9676 | yes | no |
| B7K2I1 | GSA_CYAP8 | 5, ., 4, ., 3, ., 8 | 0.7334 | 0.8907 | 0.9792 | yes | no |
| A9B550 | GSA_HERA2 | 5, ., 4, ., 3, ., 8 | 0.6105 | 0.8739 | 0.9696 | yes | no |
| Q3M3B9 | GSA_ANAVT | 5, ., 4, ., 3, ., 8 | 0.7300 | 0.8907 | 0.9814 | yes | no |
| Q3ACS9 | GSA_CARHZ | 5, ., 4, ., 3, ., 8 | 0.5924 | 0.8865 | 0.9768 | yes | no |
| C0ZAH4 | GSA2_BREBN | 5, ., 4, ., 3, ., 8 | 0.5803 | 0.8760 | 0.9720 | yes | no |
| B2J7M9 | GSA_NOSP7 | 5, ., 4, ., 3, ., 8 | 0.7394 | 0.8907 | 0.9814 | yes | no |
| A2BPW6 | GSA_PROMS | 5, ., 4, ., 3, ., 8 | 0.6832 | 0.8844 | 0.9722 | yes | no |
| B0CC57 | GSA_ACAM1 | 5, ., 4, ., 3, ., 8 | 0.7279 | 0.8802 | 0.9699 | yes | no |
| P24630 | GSA_SYNP6 | 5, ., 4, ., 3, ., 8 | 0.7328 | 0.8886 | 0.9769 | yes | no |
| Q110Z9 | GSA_TRIEI | 5, ., 4, ., 3, ., 8 | 0.7303 | 0.8802 | 0.9699 | yes | no |
| Q6YZE2 | GSA_ORYSJ | 5, ., 4, ., 3, ., 8 | 0.8084 | 0.9432 | 0.9393 | yes | no |
| A8G3J9 | GSA_PROM2 | 5, ., 4, ., 3, ., 8 | 0.6945 | 0.8802 | 0.9676 | yes | no |
| Q3ALU9 | GSA_SYNSC | 5, ., 4, ., 3, ., 8 | 0.7101 | 0.8697 | 0.9672 | yes | no |
| Q8DLK8 | GSA_THEEB | 5, ., 4, ., 3, ., 8 | 0.7326 | 0.8802 | 0.9588 | yes | no |
| Q7V2J3 | GSA_PROMP | 5, ., 4, ., 3, ., 8 | 0.6954 | 0.8760 | 0.9630 | yes | no |
| A2C7I7 | GSA_PROM3 | 5, ., 4, ., 3, ., 8 | 0.6939 | 0.8718 | 0.9696 | yes | no |
| Q31QJ2 | GSA_SYNE7 | 5, ., 4, ., 3, ., 8 | 0.7352 | 0.8886 | 0.9769 | yes | no |
| Q42522 | GSA2_ARATH | 5, ., 4, ., 3, ., 8 | 0.8396 | 0.9915 | 1.0 | yes | no |
| P42799 | GSA1_ARATH | 5, ., 4, ., 3, ., 8 | 0.8224 | 0.9936 | 0.9978 | no | no |
| Q2RJ31 | GSA_MOOTA | 5, ., 4, ., 3, ., 8 | 0.5847 | 0.8781 | 0.9565 | yes | no |
| Q31C50 | GSA_PROM9 | 5, ., 4, ., 3, ., 8 | 0.6997 | 0.8676 | 0.9516 | yes | no |
| Q7NPI4 | GSA_GLOVI | 5, ., 4, ., 3, ., 8 | 0.6406 | 0.8886 | 0.9791 | yes | no |
| Q85WB7 | GSA_BRANA | 5, ., 4, ., 3, ., 8 | 0.8329 | 0.9915 | 0.9978 | N/A | no |
| Q8YS26 | GSA_NOSS1 | 5, ., 4, ., 3, ., 8 | 0.7300 | 0.8907 | 0.9814 | yes | no |
| Q2JS70 | GSA_SYNJA | 5, ., 4, ., 3, ., 8 | 0.7011 | 0.8928 | 0.9747 | yes | no |
| B0JPW6 | GSA_MICAN | 5, ., 4, ., 3, ., 8 | 0.7240 | 0.8907 | 0.9792 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 476 | |||
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 0.0 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 0.0 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 0.0 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 0.0 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 0.0 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-125 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-108 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 8e-71 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 7e-69 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-63 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 7e-61 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-52 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 1e-49 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-48 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 3e-48 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 5e-46 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-46 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 1e-45 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 3e-43 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 4e-43 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 5e-41 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 6e-41 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 8e-41 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 1e-40 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 1e-39 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 3e-39 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 6e-39 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 2e-37 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 5e-37 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-36 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-36 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 2e-36 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 2e-35 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 5e-35 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-34 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 2e-34 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 5e-34 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-33 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 4e-33 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 4e-32 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 7e-32 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 7e-32 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 1e-31 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 8e-31 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 3e-30 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 8e-30 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 2e-28 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 3e-28 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 3e-27 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 9e-26 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 1e-23 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 1e-23 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 4e-22 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 1e-21 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 9e-21 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 1e-20 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 1e-20 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 3e-20 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 4e-20 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 4e-20 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-19 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 4e-19 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 1e-18 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 2e-18 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 4e-18 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 6e-18 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 7e-18 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 1e-17 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 3e-17 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-15 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 1e-15 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 1e-14 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-14 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 7e-14 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 8e-14 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 2e-13 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 1e-11 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-11 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 3e-11 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 1e-09 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 9e-07 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 1e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 4e-06 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 5e-06 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 9e-06 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 1e-05 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 9e-05 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-04 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-04 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 916 bits (2368), Expect = 0.0
Identities = 384/473 (81%), Positives = 421/473 (89%), Gaps = 6/473 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSS---AGSSRCSVKMSVSVEEQRKNFTLKKSEEAF 57
MAA + G +GL SCS+K + R SSS +KM+VSVEE+ K FT KSEE F
Sbjct: 1 MAAALAGSALGL--SCSAKPSARRSSSQRRRAVRSSVIKMAVSVEEK-KKFTTTKSEEIF 57
Query: 58 NVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD 117
AKELMPGGVNSPVRAFKSVGGQPIVFD VKGS+ WD+DGNEYIDYVGSWGPAIIGHAD
Sbjct: 58 KAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHAD 117
Query: 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177
D+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPS+EMVRFVNSGTEACMGVLRLARA
Sbjct: 118 DEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARA 177
Query: 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
+TGRE+IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT TLTAP+ND+ A++
Sbjct: 178 YTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVK 237
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297
LFE NKGEIAA+ILEPVVGNSGFI PK +FL +R ITKENGALL+FDEVMTGFR+AYG
Sbjct: 238 KLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYG 297
Query: 298 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357
GAQEYFG+TPDLTTLGK+IGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAG
Sbjct: 298 GAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAG 357
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417
IHTLKRL++PGTYEYL+KIT +L QGI++AGKKAGH +CGGYISGMFGFFFTEGPVYNF
Sbjct: 358 IHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFA 417
Query: 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
DAKKS+T KFARF+RGMLEEGVY APSQFEAGFTSLAH+ +DI TI AAE+V
Sbjct: 418 DAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERV 470
|
Length = 474 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 791 bits (2046), Expect = 0.0
Identities = 277/421 (65%), Positives = 329/421 (78%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSEE F AK+L+PGGVNSPVRAFKSVGG P + KG++++D+DGNEYIDYVGSWG
Sbjct: 1 MSKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GHA +V+ A+ E +KG SFGAP LE LAE+VI VPSIEMVR VNSGTEA M
Sbjct: 61 PMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG ATLGLPDSPGVP+ TLTAP
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND+ A+E LFE EIAA+I+EPV GN G + PKP FL +R + E+GALLIFDEVM
Sbjct: 181 YNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ Y+GVTPDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NPLAM AG+ TLK LKEPG YE L +T L +G+ +A KKAG + + MFG FFT
Sbjct: 301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFT 360
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
+ PV N+ DAKKS+T +FARF+ ML+EGVY APSQFEAGF S AH+ +DI+ T+ AA K
Sbjct: 361 DEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKTLEAARK 420
Query: 470 V 470
Sbjct: 421 A 421
|
Length = 426 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 646 bits (1668), Expect = 0.0
Identities = 249/420 (59%), Positives = 311/420 (74%), Gaps = 1/420 (0%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE F AK+++PGGVNSPVRAFKSVGG PI + KG+++ D+DGNEYIDYV WGP
Sbjct: 6 KSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPL 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GHA V+ A+ E +++G SFGAP LE LAE++I VPSIE VRFVNSGTEA M
Sbjct: 66 ILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSA 125
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLARA+TGR++IIKFEGCYHGH+D LVKAGSG ATLG P SPGVP TL P+N
Sbjct: 126 IRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN 185
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ALE FE +IAA+I+EPV GN G + P+P FL +R +T+E+GALLIFDEV+TG
Sbjct: 186 DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+A GGAQ Y+GV PDLTTLGKIIGGGLP+GA+GGR +IME +AP GP+YQAGTLSGNP
Sbjct: 246 FRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNP 305
Query: 352 LAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
LAM AG+ TL+ L G YE L+ + L +G+ A ++ G + + MFG FFTE
Sbjct: 306 LAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTE 365
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
V N+ DAK+S+ +FA+F+ +L GVY APSQFEAGF S AH+ +DI T+ AA++
Sbjct: 366 EGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDRTLEAADEA 425
|
Length = 432 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 612 bits (1580), Expect = 0.0
Identities = 254/419 (60%), Positives = 315/419 (75%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE F AK++ PGGVNSPVRAFKSVG P KG++++D+DGNEYIDYV SWGP
Sbjct: 1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPL 60
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GHA +V+ A+ E +++GTS+GAP E +LA+ +IS VPS+EMVRFVNSGTEA M
Sbjct: 61 ILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSA 120
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLAR +TGR++IIKFEGCYHGH D LVKAGSG ATLGLP SPGVP+ TL P+N
Sbjct: 121 VRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN 180
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ALE +FE EIA +I+EPV GN G + PKP+FL +R +T+E G+LLIFDEVMTG
Sbjct: 181 DLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+A GGAQEYFGV PDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGNP
Sbjct: 241 FRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNP 300
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAM AG+ TLK L E G Y L+++ L +G+ + + G + MF FFTE
Sbjct: 301 LAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEE 360
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
V N+ DAKKS+T FA+F+ ML++GV+ PSQFEA F S AH+ +DI++TI AAE+V
Sbjct: 361 EVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENTIEAAEEV 419
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 214/425 (50%), Positives = 295/425 (69%), Gaps = 3/425 (0%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYV 105
NFT KSE A E + GGVNSP R++K+VGG P+V + KG++ +D+DGN+YIDY+
Sbjct: 2 NFT--KSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYL 59
Query: 106 GSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGT 165
++GP I GHA + A+ E + G +G P LE A+M+ A+PS+E VRFVNSGT
Sbjct: 60 AAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGT 119
Query: 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYET 225
EA M +R+ARA+TGR +IIKF GCYHGH+D LV AGSG +TLG PDS GVPK E
Sbjct: 120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEV 179
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285
+T PFND+ AL+ + E+AA+++EP+VGN G + PKP FL A+ + E GAL+I+
Sbjct: 180 ITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIY 239
Query: 286 DEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345
DEV+T FR YGGAQ+ GV PDLT LGKIIGGGLP+GAYGGR+DIME VAP GP YQAG
Sbjct: 240 DEVITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAG 299
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405
T++GNP +M AGI L+ L++ G YE L+++ L +GI++A +K G I + G
Sbjct: 300 TMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALT 359
Query: 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTIT 465
+FT+ V N++ A++S+ F +F++ ML +G+ APS++EA F + AH+ +DI+ T+
Sbjct: 360 VYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTAHTEEDIEETLE 419
Query: 466 AAEKV 470
A ++
Sbjct: 420 AVDRA 424
|
Length = 428 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 369 bits (950), Expect = e-125
Identities = 143/425 (33%), Positives = 211/425 (49%), Gaps = 25/425 (5%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
F ++++ G +V P+V +G++++D+DGN Y+D++ G +GH
Sbjct: 2 FERDRKVLWHGY--------TVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHN 53
Query: 117 DDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172
+V+ AL E + K T F LAE++++ P ++ V FVNSGTEA L
Sbjct: 54 HPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAAL 113
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG----LPDSPGVPKGATYETLTA 228
+LARA+TGR++II FEG YHG L GS G LP VP Y
Sbjct: 114 KLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAE 173
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
+D+ ALE E + E+AA+I+EP+ G G I P P +L A+R + +++G LLI DEV
Sbjct: 174 LADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEV 233
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
TGF R A E+FGV PD+ TLGK +GGGLP+GA GR +IM+ PAGP GT
Sbjct: 234 QTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMD-AFPAGPGLHGGTF 292
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
GNPLA A + L+ L+E G E ++ L + + + +K M G
Sbjct: 293 GGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE 352
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEAGFTSLAHSSDDIQHTIT 465
+ K + A+ + LE G+ PS L + ++I +
Sbjct: 353 LVKDRA-----TKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLD 407
Query: 466 AAEKV 470
A ++
Sbjct: 408 ALDEA 412
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-108
Identities = 162/420 (38%), Positives = 229/420 (54%), Gaps = 5/420 (1%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVG 106
++++ F+ A + PGGVNSPVRA +SVG P + S G D G +ID+ G
Sbjct: 1 MPSIQEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCG 60
Query: 107 SWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGT 165
SWG I GH+ ++ A+ + ++GTS+G E + AE + S + +RFV+SGT
Sbjct: 61 SWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGT 120
Query: 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE- 224
EA M +RLAR TGR IIKF GCYHGHAD L G + L +
Sbjct: 121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLL--QGISFSETSLDTLTHLVDTDLAHP 178
Query: 225 -TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
TL+ P+ND + + + +A +I EP+ N G + PKP F+ I + + G+L
Sbjct: 179 LTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLS 238
Query: 284 IFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343
I DEV+TGFR+A GGA + V PD+T GKI+GGGLP A + IM+ +AP G ++Q
Sbjct: 239 IMDEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQ 298
Query: 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403
AGTLSGNPLAM AG ++ +E G Y L+ + I + + G + M
Sbjct: 299 AGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSM 358
Query: 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 463
F FFF E N +A+ S+ F FY+ +GVY +PS FEA F S AHS +++ +
Sbjct: 359 FSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAHSMENLDYA 418
|
Length = 433 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 8e-71
Identities = 128/423 (30%), Positives = 201/423 (47%), Gaps = 42/423 (9%)
Query: 60 AKELMPGGVNSPVRAFKSV-GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD 118
L+PGG ++ + P G+H+WD+DGNEYI+Y +GHA
Sbjct: 8 LHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYP 67
Query: 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
V+ A+ E ++ G +F P +E AE + + +MV+F +G++A +RLARA+
Sbjct: 68 PVVEAVREALQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAY 127
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238
TGR+ + + C PF + T P S G+P + T+T +ND+++LE
Sbjct: 128 TGRDLVAR---CAD---HPFFSTDDWFIGTT--PMSAGIPASVSALTVTFRYNDIASLEA 179
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298
LFE++ G IA +ILEP + P+ FL+ +RR+ ENGAL I DE++TGFR G
Sbjct: 180 LFEDHPGRIACVILEPATADE----PQDGFLHEVRRLCHENGALFILDEMITGFRWHMRG 235
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG---------TLSG 349
AQ+ +G+ PDL+ GK +G G V A G+R+ ME+ G + T
Sbjct: 236 AQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMEL----GGLEHTDRERVFLLSTTHGA 291
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG---HAICGGYISGMFGF 406
A+ A I T+ ++ E L++ +L G+ +A + G H G +
Sbjct: 292 ETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCL--T 349
Query: 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 466
+ T + + S+ + F + + GV PS S AH DI+ TI A
Sbjct: 350 YSTLDG-----NGQPSQAFR-TLFLQETIRRGV-LMPSL----VVSYAHGDADIERTIDA 398
Query: 467 AEK 469
Sbjct: 399 VHG 401
|
Length = 431 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 7e-69
Identities = 102/318 (32%), Positives = 148/318 (46%), Gaps = 34/318 (10%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLA 145
KG ++D+DG Y+D++ +GH +++ A+ E K T LA
Sbjct: 6 KGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLA 65
Query: 146 EMVISAVP-SIEMVRFVNSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPF 198
E + P ++ V F+NSG+EA ++LAR TG+ +II F G +HG
Sbjct: 66 EKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGA 125
Query: 199 L-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-----------LFENNKGE 246
L V SG P PGV P+ D+ A E + +
Sbjct: 126 LSVTGSSGYKKGFGPSLPGVYF--------LPYPDLEAAEEELACADEALRLIKAVHDDN 177
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
IAA+I+EP+ G G + P P FL +R I K++G LLI DEV TGF R A E++GV
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGV 237
Query: 306 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365
TPD+ TL K + GGLP+ A +IM+ P GT GNPLA A + L ++
Sbjct: 238 TPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGS---HGGTFGGNPLACAAALAVLDIIE 294
Query: 366 EPGTYEYLNKITGELTQG 383
+ + + L +G
Sbjct: 295 DENLLQNAQEKGDYLRKG 312
|
Length = 338 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 1e-63
Identities = 106/319 (33%), Positives = 150/319 (47%), Gaps = 27/319 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 137
P+V +G+++WD G EY+D+ +GH ++ AL E +K F
Sbjct: 25 PVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE 84
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGH 194
E LAE ++ P + V F NSG EA L+LAR +TG + +II FE +HG
Sbjct: 85 PQAE--LAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGR 142
Query: 195 ADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252
+ A P PG PFND+ ALE + + AA+I+
Sbjct: 143 T-LGALSATGQPKYRKGFGPLLPGF--------RHVPFNDIEALEAAID---EDTAAVIV 190
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311
EP+ G G I P+FL A+R + E+GALLI DEV TG R A E++GV PD+ T
Sbjct: 191 EPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT 250
Query: 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
L K +GGG P+GA +I P T GNPLA + L+ L E G E
Sbjct: 251 LAKALGGGFPIGAMLATEEIASAFTPGD---HGSTFGGNPLACAVALAVLEVLLEEGLLE 307
Query: 372 YLNKITGELTQGIIDAGKK 390
+ + L Q + + ++
Sbjct: 308 NVREKGEYLLQRLRELKRR 326
|
Length = 404 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 7e-61
Identities = 104/315 (33%), Positives = 154/315 (48%), Gaps = 34/315 (10%)
Query: 77 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---- 132
P+V +G++++D+DGNEY+D++ +GH +V+ A+ + K
Sbjct: 34 GRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHT 93
Query: 133 --SFGAPCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188
+ P + LAE + + P V F NSG EA +++ARA+TGR +I F+
Sbjct: 94 RDLYYEPYVE---LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFD 150
Query: 189 GCYHGH--------ADPFLVKAGSG-----VATLGLPDSPGVPKGATYETLTAPFNDVSA 235
G +HG KAG G V + P+ P G E +
Sbjct: 151 GAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA--LEY 208
Query: 236 LENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+E + + E+AAII+EP+ G G I P FL A+R++ +E+G LLI DEV TGF
Sbjct: 209 IERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGF 268
Query: 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
R A E+FGV PD+ TL K +GGGLP+ A GR +IM+ GT GNP
Sbjct: 269 GRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPGG----HGGTFGGNP 324
Query: 352 LAMTAGIHTLKRLKE 366
+A A + L ++E
Sbjct: 325 VACAAALAVLDVIEE 339
|
Length = 447 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 38/332 (11%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---- 130
+ G P+ KG++++D++G EY+D+V +GHA +++ AL E ++K
Sbjct: 3 MNTYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV 62
Query: 131 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-----RERII 185
+ E LAE + + V F NSG EA L+LAR +TG +++II
Sbjct: 63 SNLYYTEPQEE--LAEK-LVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKII 119
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY-ETLT-----APFNDVSALENL 239
FE +HG T+G + G PK E L AP+ND+ +L+
Sbjct: 120 AFENSFHGR-------------TMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKA 166
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298
+ E AA+I+EP+ G G +FL A+R I K+ ALLIFDEV TG R
Sbjct: 167 ID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF 223
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
A E++G+ PD+ TL K +GGG+P+GA + ++ E P T GNPLA A +
Sbjct: 224 AYEHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGD---HGSTFGGNPLACAAAL 280
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
L+ +++ E + + + + + GK
Sbjct: 281 AVLEVIEKERLLENVKEKGDYFKERLEELGKN 312
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-49
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
PI F +G+ +WD DG EY+D++ +GH +++ A+ E K TS +
Sbjct: 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYI 80
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIK-----FEGCY 191
E LAE + + ++ V F NSG EA ++LAR + ++ I K E +
Sbjct: 81 EPQEE--LAEK-LVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSF 137
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL-----TAPFNDVSALENLFENNKGE 246
HG +ATL P +G +E L PFND+ AL+ +
Sbjct: 138 HGRT----------LATLSATGQPKYQEG--FEPLVEGFIYVPFNDIEALKAAITDK--- 182
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQE 301
AA++LEP+ G G ++L A+R + ENG LLI DEV TG AY +
Sbjct: 183 TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAY----Q 238
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
++G+ PD+ TL K +GGG+P+GA + + ++ P T GNPLA A + +
Sbjct: 239 HYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGD---HGSTFGGNPLACAAALAVI 295
Query: 362 KRLKE 366
+ ++E
Sbjct: 296 EIIEE 300
|
Length = 396 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-48
Identities = 103/316 (32%), Positives = 146/316 (46%), Gaps = 49/316 (15%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA---P 137
+ +G + + +DG EY+D+ A +GH +V+ A+ E K G
Sbjct: 27 LPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYE 86
Query: 138 CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
+L+ LAE + P ++ F NSG EA G L+LA+ T R II F GC+HG
Sbjct: 87 SILK--LAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT- 143
Query: 197 PFLVKAGSGVATLGL------------PDSPGV-----------PKGATYETLTAPFNDV 233
+ L + P V PKG E +
Sbjct: 144 ---------LGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL--ECL 192
Query: 234 SALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE+LF++ E+AA+I+EPV+G G+I P FL +R I +G LLIFDEV TG
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG 252
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
F R A + FGV PD+ T+ K I GLP+ A +++ME P G T GN
Sbjct: 253 FGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQ-WPLGS--HGTTFGGN 309
Query: 351 PLAMTAGIHTLKRLKE 366
P+A A + TL+ +KE
Sbjct: 310 PVACAAALATLEVIKE 325
|
Length = 433 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-48
Identities = 98/315 (31%), Positives = 145/315 (46%), Gaps = 23/315 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDY-VGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
P+ +G+ D+DG+ Y D+ +G G A+ GH+ V AL E ++G + P
Sbjct: 58 PLFVAEARGARFTDVDGHRYDDFCLGDTG-AMFGHSPAPVARALAEQARRGLTTMLPSED 116
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ E ++ + + + T+A VLR ARA TGR +I+ F GCYHG D V
Sbjct: 117 AAWVGEE-LARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFV 175
Query: 201 KAGSGVAT-----LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255
G LG AT T FND++ALE G++AA++ EP
Sbjct: 176 DLVDGRPVQRPGLLG----QVHDLTAT--TRVVEFNDLAALEAALA--DGDVAAVLAEPA 227
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKI 315
+ N G + P+P F A+R +T+ G LL+ DE T GG G+ PD +GK
Sbjct: 228 MTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPDFLVVGKP 286
Query: 316 IGGGLPVGAYGGRRDI---MEMVAPAGPMYQAG---TLSGNPLAMTAGIHTLKRLKEPGT 369
I GG+P YG ++ + + P +G TLS N LAM A TL +
Sbjct: 287 IAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA 346
Query: 370 YEYLNKITGELTQGI 384
Y ++ + L G+
Sbjct: 347 YAHMLALAARLAAGL 361
|
Length = 453 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-46
Identities = 100/317 (31%), Positives = 156/317 (49%), Gaps = 30/317 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG------ 135
P+V + + +WDI+GNEYID++ +GH + +V+ A+ E K +
Sbjct: 24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP 83
Query: 136 -APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
P LL L E+ P V F SG++A G ++ ARA+T R +I+ + Y+G
Sbjct: 84 VEPLLLAEKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGS 140
Query: 195 --------ADPFLVKAG----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242
F V+A S V + PD P G + V ++ FE
Sbjct: 141 TYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKM--ECVEYIKEKFEG 198
Query: 243 N--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299
+AA+ EP+ G++G I P D+ +++I E+G LL+ DEV +G R A
Sbjct: 199 EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFA 258
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
E+FGV PD+ TLGK +GGGLP+ A GR +IM+ + P + TLSGNP+A A +
Sbjct: 259 IEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAF---TLSGNPVASAAALA 315
Query: 360 TLKRLKEPGTYEYLNKI 376
++ ++E + K+
Sbjct: 316 VIEEIEEKNLLKRAEKL 332
|
Length = 443 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 6e-46
Identities = 107/316 (33%), Positives = 153/316 (48%), Gaps = 43/316 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFG 135
P+V + +G + D+DGN Y+D+ +GHA +V+ A+ E +K T F
Sbjct: 36 YPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY 95
Query: 136 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
+E LAE ++ P V F NSGTE+ +++AR TGR+ II F G +HG
Sbjct: 96 YEPAVE--LAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHG 153
Query: 194 -----------------HADPFLVKAGSGVATLGLPDSPGVPKGA-TYETLTAPFNDVSA 235
P + GV + P+ P G E N V
Sbjct: 154 RTYGSLSLTASKPVQRKGFFPLM----PGVIHVPYPNPYRNPWGIENPEECG---NAVLD 206
Query: 236 L--ENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
+ LF+ E+AAII+EP+ G G++ P +F +R++ + G LLI DEV TG
Sbjct: 207 FIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTG 266
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
R A E+FGV PD+ TL K I GGLP+GA GR ++M + P G A T GN
Sbjct: 267 MGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFL--PPGS--HANTFGGN 322
Query: 351 PLAMTAGIHTLKRLKE 366
P+A A + TL+ L+E
Sbjct: 323 PVAAAAALATLEELEE 338
|
Length = 441 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-45
Identities = 104/300 (34%), Positives = 149/300 (49%), Gaps = 23/300 (7%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GT 132
F + G PI KG+ + D +G Y+D+ +GH V A+ E +
Sbjct: 5 FPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV 64
Query: 133 SFGAPCLLENVLAEMV---ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189
S L N L E V ++ + ++V F NSG EA L+LAR TG+ +I+ FE
Sbjct: 65 S----NLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQ 120
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249
+HG F + +G + P +P G T+ PFND+ AL+ + E+AA
Sbjct: 121 SFHGRT--FGTMSATGQEKIKEGFGPLLP-GFTH----VPFNDIKALKEVMN---EEVAA 170
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
++LE V G G I P FL ++ + K+ GALLI DEV TG R A E FG+ PD
Sbjct: 171 VMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD 230
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
+ T+ K +G G+PVGA G++ E+ GP T GNPLAM A L+ +K+P
Sbjct: 231 IVTVAKGLGNGIPVGAMIGKK---ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287
|
Length = 377 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-43
Identities = 97/331 (29%), Positives = 148/331 (44%), Gaps = 45/331 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+V KG +WD++G +Y D++ ++ GH ++LAAL +K T +F
Sbjct: 14 PVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYND 73
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L LAE I+ + + V +NSG EA L+ AR + + +II G
Sbjct: 74 VL---GLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNG 130
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGV-----PKGATYETLTAPFNDVSALENLFENNK 244
+ G + P P +E +NDV ALE L ++
Sbjct: 131 NFSGRT----------IGACSASTDPKCYNNFGPFVPGFEL--VDYNDVEALEKLLQDPN 178
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQE 301
+AA I+EP+ G +G I P +L + + K+ LLI DE+ TG L G A +
Sbjct: 179 --VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHD 234
Query: 302 YFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIH 359
+ GV PD+ LGK + GGL P+ A D+M ++ P + G T GNPLA +
Sbjct: 235 HEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG----EHGSTYGGNPLACAVAVE 290
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
L+ LKE E ++ G+ + KK
Sbjct: 291 ALEVLKEEKLAENAQRLGEVFRDGLKELLKK 321
|
Length = 400 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 4e-43
Identities = 108/325 (33%), Positives = 151/325 (46%), Gaps = 45/325 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
P+ +G+ +WD+DG EY+D +G +GHA V+ A+ + S F
Sbjct: 26 PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85
Query: 138 CLLENVLAEMVIS--AVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195
+ LAE ++ P V F NSG EA +LAR TGR +I+ EG +HG
Sbjct: 86 PQIA--LAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRT 142
Query: 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-----PFNDVSALENLFENNKGEIAAI 250
G+ T G P K A +E L P+ DV AL + + AA+
Sbjct: 143 ------MGALALT-GQPA-----KRAPFEPLPGGVEHVPYGDVDALAAAVD---DDTAAV 187
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
LEP+ G +G + P +L A R IT +GALL+ DEV TG R A ++ GVTPD+
Sbjct: 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDV 247
Query: 310 TTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAG----TLSGNPLAMTAGIHTLKR 363
TL K +GGGLP+GA +A PA + G T GNP+A A + L
Sbjct: 248 VTLAKGLGGGLPIGA---------CLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDT 298
Query: 364 LKEPGTYEYLNKITGELTQGIIDAG 388
+ G E ++ +L GI G
Sbjct: 299 IASEGLLENAERLGEQLRAGIEALG 323
|
Length = 398 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 5e-41
Identities = 109/333 (32%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 76 KSVGGQPIVF-DSVKGSHMWDIDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGT 132
+ VG ++ D + + +WD +G YID+ G A++ GH +V+AA+ + + T
Sbjct: 16 RGVGMTTQIYADRAENAEIWDKEGRRYIDFAA--GIAVVNTGHRHPRVIAAVKAQLDRFT 73
Query: 133 SFGAPCL-LEN--VLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 187
+ EN LAE + + VP + FV +G EA +++ARA TGR +I F
Sbjct: 74 HTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAF 133
Query: 188 EGCYHGHADPFL----------VKAGSGVATLGLPDSPGVP-----KGATYETLTAPFND 232
G +HG F+ K G G +PD VP G + E
Sbjct: 134 GGGFHGRT--FMGMSLTGKVVPYKVGFGAM---MPDVYHVPFPVELHGVSVE------QS 182
Query: 233 VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
++AL+ LF+ + +AAII+EPV G GF F+ A+R + ++G LLI DEV T
Sbjct: 183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT 242
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
GF R A E+ V DLTT+ K + GG P+ A GR +IM+ P G GT G
Sbjct: 243 GFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGG---LGGTYGG 299
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
NPL + A L ++E E N++ L Q
Sbjct: 300 NPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332
|
Length = 425 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-41
Identities = 90/328 (27%), Positives = 127/328 (38%), Gaps = 54/328 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
P V +G ++ DIDG Y+D + GH ++ A+ + + K G
Sbjct: 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH 86
Query: 136 APCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF------TGRERIIKF 187
P + LAE + P + V F +SG+EA L++A + R++ I
Sbjct: 87 EPAIE---LAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISR 143
Query: 188 EGCYHGHADPFLVKAGSGVATLGLPDSPG---------------------VPKGATYETL 226
YHG + + + +G E
Sbjct: 144 RNGYHG----------DTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGD 193
Query: 227 TAPFNDVSALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLI 284
LE L + IAA I+EPVVG G + P P +L +R I + G LLI
Sbjct: 194 EEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLI 253
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIME--MVAPAGP 340
DEV TGF R A E+ G+ PD+ L K + GG LP+ A I E AG
Sbjct: 254 ADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGA 313
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
T SGNPLA A + L L+E
Sbjct: 314 FMHGHTYSGNPLACAAALANLDILEEED 341
|
Length = 449 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 8e-41
Identities = 107/337 (31%), Positives = 158/337 (46%), Gaps = 59/337 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGTSFGAPCL 139
PI D + +WD++G EY+D+ G G A++ GH +V+AA+ +KK C
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAG--GIAVLNTGHLHPKVVAAVEAQLKK---LSHTCF 78
Query: 140 LENVLAEMVISAVPSIEMVRFVN---------------SGTEACMGVLRLARAFTGRERI 184
V++ P +E+ +N +G+EA +++ARA T R +
Sbjct: 79 -------QVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGV 131
Query: 185 IKFEGCYHGHADPFLVKAGSGVATLGL-----PDSPGV---PKGATYETLTAPFNDVS-- 234
I F G YHG TL L P S G+ P P + VS
Sbjct: 132 IAFTGAYHGRT----------HYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSED 181
Query: 235 ----ALENLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
++E +F+N+ +IAAII+EPV G GF A P F+ +R + E+G +LI DEV
Sbjct: 182 DAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEV 241
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
TG R A E GV DLTT K I GG P+ GR ++M+ +AP G GT
Sbjct: 242 QTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGG---LGGTY 298
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+GNP+A A + LK ++ + N + +L G+
Sbjct: 299 AGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL 335
|
Length = 425 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 25/296 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
IVF KGS ++D +G Y+D++ W +GH + ++ AL +K + +P
Sbjct: 19 DIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLIN-PSPAFYN 77
Query: 142 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGH 194
+A++ +++ + V F NSG EA G ++LAR + G II F+ +HG
Sbjct: 78 EPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGR 137
Query: 195 ADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
+ +G G T+ P PG PK A ND++++E L + + A++LE
Sbjct: 138 TLATMSASGKPGWDTIFAPQVPGFPK--------AELNDIASVEKLITD---KTVAVMLE 186
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312
PV G G I +F+ +R +TK++G LLI DEV TG R A E G+ PD+ TL
Sbjct: 187 PVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTL 246
Query: 313 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
GK IGGG+P+ A + VA Q GT +GNPL G+ + +L PG
Sbjct: 247 GKGIGGGVPLAALLAK----AEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG 298
|
Length = 395 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 44/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+V D G+ + D+DG YID + S +GHA +V+ A+ K + P +
Sbjct: 25 PLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TPAYMY 83
Query: 142 NV----LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-- 193
+ LA+ + P + V F SG++A G+++ ARA+TGR II F YHG
Sbjct: 84 HEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143
Query: 194 ---------------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVS 234
P L G + PD P E AP +
Sbjct: 144 YGSLSMSGISLNMRRKYGPLL----PGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE-- 197
Query: 235 ALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+FE E+A I++E + G+ G + P P + A+ + +E+G L D++ G
Sbjct: 198 ----MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL 253
Query: 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
R + +F +TPDL + GK + GG+P+ A GR++IME + ++ T NP
Sbjct: 254 GRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLF---TTGANP 310
Query: 352 LAMTAGIHTLKRLKE 366
++ A + T+ +++
Sbjct: 311 VSCAAALATIDMIED 325
|
Length = 445 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-39
Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 23/297 (7%)
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLEN 142
+ + + +WD++G EYID+ GH +V+AA+ + + + T P
Sbjct: 27 ERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYV 86
Query: 143 VLAEMVISAVPSIE---MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
LAE + + P I+ F +G EA +++ARA+TGR +I F G +HG L
Sbjct: 87 TLAERINALAP-IDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT--LL 143
Query: 200 VKAGSG-VA--TLGLPDSPGVPKGATYETL---TAPFNDVSALENLFENNKG--EIAAII 251
A +G VA +G PG A Y + +S++E LF+ + ++AAI+
Sbjct: 144 TMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAIL 203
Query: 252 LEPVVGNSGF-IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
LEP+ G GF +AP P+F++A+R + E+G LLI DEV TGF R A EY+ V PDL
Sbjct: 204 LEPIQGEGGFNVAP-PEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262
Query: 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
T+ K +GGG+P+ A GR ++M+ AP G GT +GNPLA+ A + L + E
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGG---LGGTYAGNPLAVAAALAVLDVIAE 316
|
Length = 421 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 6e-39
Identities = 100/314 (31%), Positives = 143/314 (45%), Gaps = 27/314 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
+ F+ +G + D DG Y+D+ +GHA ++ AL E +K S + P
Sbjct: 14 DLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIP 73
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 191
+ LAE ++ + + V F NSG EA ++ AR + R RII FEG +
Sbjct: 74 --EQERLAERLVENSFA-DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAF 130
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251
HG + G G P VP G PF D+ AL+ N AAI+
Sbjct: 131 HGRTLATIAAGGQEKYLEGF--GPLVP-GFDQ----VPFGDIEALKAAITPN---TAAIL 180
Query: 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
+EP+ G G +FL +R++ ENG LLIFDEV G R A E+ GVTPD+
Sbjct: 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240
Query: 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370
+ K IGGG P+GA + + + P T GNPLAM G L + PG
Sbjct: 241 AVAKGIGGGFPLGACLATEEAAKGMTPGT---HGSTYGGNPLAMAVGNAVLDVILAPGFL 297
Query: 371 EYLNKITGELTQGI 384
+ + ++ L Q +
Sbjct: 298 DNVQRMGLYLKQKL 311
|
Length = 389 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-37
Identities = 96/315 (30%), Positives = 149/315 (47%), Gaps = 31/315 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+VF KGS +WD +G +Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 58 PVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYND 117
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE---------RIIKFE 188
AE + S +MV +N+G E ++LAR + G E I+
Sbjct: 118 KF--PEFAEYLTSMF-GYDMVLPMNTGAEGVETAIKLARKW-GYEKKGIPKNEAIIVSCC 173
Query: 189 GCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247
GC+HG + + AT G P PG K F D+ ALE +FE + I
Sbjct: 174 GCFHGRTLAAISMSCDNEATRGFGPLLPGHLK--------VDFGDLDALEKIFEEDGDRI 225
Query: 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 306
AA + EP+ G +G + P +L A+R + ++ L+I DE+ TG R A ++ V
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR 285
Query: 307 PDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365
PD+ LGK +GGG +PV A +D+M + P T GNPLA + L+ ++
Sbjct: 286 PDVVILGKALGGGVIPVSAVLADKDVMLCI---KPGEHGSTFGGNPLASAVAMAALQVVQ 342
Query: 366 EPGTYEYLNKITGEL 380
+ E K+ EL
Sbjct: 343 DEKLAERSAKLGQEL 357
|
Length = 474 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-37
Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 61/348 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + +G +++D DG EYID + SW I GH ++ AA+ E + K LE
Sbjct: 14 PLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDK---------LE 64
Query: 142 NV------------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRE 182
+V LAE ++ P +E V F +SG+ A L++A + G+
Sbjct: 65 HVMFGGLTHEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKT 124
Query: 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG---VPKGATYETLTAPFNDV------ 233
R + F YHG D F + + D G + + +E + P
Sbjct: 125 RFLAFRNGYHG--DTF--------GAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDP 174
Query: 234 --------SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 284
+ALE L E + EIAA I+EP+V G G P++L +R + E G LLI
Sbjct: 175 DDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLI 234
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 339
DE+ TGF R A E+ GVTPD+ L K + GG LP+ A +I E
Sbjct: 235 ADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGK 294
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
T +GNPLA A + +L L+E E + +I +L G+
Sbjct: 295 AFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPL 342
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 1e-36
Identities = 94/282 (33%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL--AE 146
+GS +WD G EYID+ G +GHA + AL E K G E VL A+
Sbjct: 29 EGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAK 88
Query: 147 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLV 200
+I A + + V F NSG EA L+LAR + + + I+ F+ +HG F V
Sbjct: 89 KLIDATFA-DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT-LFTV 146
Query: 201 KAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256
AG G P D +P + A +ND+++ L ++ A+I+EP+
Sbjct: 147 SAG------GQPKYSQDFAPLPPDIRH----AAYNDLNSASALIDDQT---CAVIVEPIQ 193
Query: 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315
G G I FL +R + + ALLIFDEV TG R A ++GVTPD+ T K
Sbjct: 194 GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKA 253
Query: 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 353
+GGG P+GA M + G T GNPLA
Sbjct: 254 LGGGFPIGA-------MLTTEKCASVMTVGTHGTTYGGNPLA 288
|
Length = 406 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-36
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 30/335 (8%)
Query: 76 KSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF 134
VG P+ +G+ + D+DGN ID+ IGH+ +V+ A+ + + T
Sbjct: 9 SGVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHT 68
Query: 135 G---APCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEG 189
P LAE + P + F NSG EA +++AR++TGR ++ F+
Sbjct: 69 CFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDH 128
Query: 190 CYHGHAD----------PFLVKAGSGV---ATLGLPDSPGVPKGATYETLTAPFNDV-SA 235
+HG + P+ K+G G P G + L+ + +A
Sbjct: 129 GFHGRTNMTMALTAKVMPY--KSGFGPFAPEVYRAPLPYPYRDGLLDKQLS--TDGELAA 184
Query: 236 LENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292
+F + G +AA+++EPV G GFI P F+ A+ +E+G + I DEV TGF
Sbjct: 185 ARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFA 244
Query: 293 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
R A E+ G PDL T K + GLP+ GR +IM+ AP G GT +GNPL
Sbjct: 245 RTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGG---LGGTYAGNPL 301
Query: 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
A A + L ++ G E +I +T +
Sbjct: 302 ACAAALAVLAIIESEGLIERARQIGRLVTDRLTTL 336
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-36
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 91 SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMV 148
+ + D G E+ID +G +G +GH + V++A+ + K L L +LA+ +
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTL 133
Query: 149 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGS 204
+ P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 134 AALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL--SAT 191
Query: 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GE-IAAIILEPVVGNSGF 261
+T P P +P PF ++ A+ K G+ +AA+ILEP+ G G
Sbjct: 192 AKSTFRKPFMPLLP-----GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGV 246
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG- 319
I P +L A+R++ E GALLI DEV TG R A E+ V PD+ L K +GGG
Sbjct: 247 ILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV 306
Query: 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
+P+GA ++ ++ P T GNPLA A + T+ L E
Sbjct: 307 MPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLE 352
|
Length = 459 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 32/286 (11%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMV 148
+G ++WD G Y+D + G ++GH + + + E ++K G P EM+
Sbjct: 14 EGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEML 72
Query: 149 --ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206
+S + E V NSGTEA L+ AR +TGR+ II +HG
Sbjct: 73 EELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR------------ 120
Query: 207 ATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNKGEIAAIILEPVVGNSG 260
T+G + PK +E L PFNDV A + E E AA+I EP+ G G
Sbjct: 121 -TMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAK---EAITKETAAVIFEPIQGEGG 176
Query: 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGL 320
+ K +F+ +R +T++ GALLI DEV +G R A E++ V PD+ T+GK IG G+
Sbjct: 177 IVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNGV 236
Query: 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
PV D+ G T GNPLA A TL+ L+
Sbjct: 237 PVSLTLTNFDV-----ERGK--HGSTFGGNPLACKAVAVTLRILRR 275
|
Length = 364 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 5e-35
Identities = 96/286 (33%), Positives = 134/286 (46%), Gaps = 47/286 (16%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENV--- 143
+GS +WD G EYID+ G +GH ++ AL E +K L + NV
Sbjct: 30 EGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK--------LWHISNVFTN 81
Query: 144 -----LAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR--AFT----GRERIIKFEGCYH 192
LA+ +I A + E V F NSG EA +LAR A + II F +H
Sbjct: 82 EPALRLAKKLIDATFA-ERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFH 140
Query: 193 GHADPFLVKAGSGVATLGLPD-SPG---VPKGATYETLTAPFNDVSALENLFENNKGEIA 248
G F V G G P S G P T+ PFND++A++ + +++
Sbjct: 141 GRT-LFTVSVG------GQPKYSDGFGPKPADITH----VPFNDLAAVKAVIDDHT---C 186
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 307
A+++EP+ G G I P+FL +R + ++ ALLIFDEV TG R A ++GVTP
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP 246
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
D+ T K +GGG P+GA +I T GNPLA
Sbjct: 247 DILTSAKALGGGFPIGAMLTTAEIASHFKVG---THGSTYGGNPLA 289
|
Length = 403 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 33/302 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+VF +G H+WD++G Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 20 PVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYND 79
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
E AE V + + V +N+G EA ++LAR + + I+ +G
Sbjct: 80 VFGE--FAEYVTK-LFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKG 136
Query: 190 CYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248
+HG + + + P PG K P+N++ ALE E++ +
Sbjct: 137 NFHGRTLGAISMSTDPDSRTNFGPYVPGFKK--------IPYNNLEALEEALEDHGPNVC 188
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGV 305
A I+EP+ G +G + P +L +R + ++ LLI DE+ TG L G ++ V
Sbjct: 189 AFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG--LGRTGKLLCVDHENV 246
Query: 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 364
PD+ LGK + GG PV A D+M + P T GNPLA + L+ L
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE---HGSTYGGNPLACAVAVAALEVL 303
Query: 365 KE 366
+E
Sbjct: 304 EE 305
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 94/285 (32%), Positives = 134/285 (47%), Gaps = 31/285 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P + +GS +WD G EYID+ G +GHA +++ AL E K G E
Sbjct: 18 PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNE 77
Query: 142 NV--LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHG 193
V LA+ ++ A + + V F NSG EA L+LAR + + I+ F+ +HG
Sbjct: 78 PVLRLAKKLVDATFA-DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHG 136
Query: 194 HADPFLVKAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249
F V G G P +P G + AP+ND++A + L + A
Sbjct: 137 RT-LFTVSVG------GQPKYSQGFAPLPGGIKH----APYNDLAAAKALISDKT---CA 182
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
+I+EP+ G G + P FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 242
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
+ T K +GGG P+GA +I + T GNPLA
Sbjct: 243 ILTSAKALGGGFPIGAMLTTTEIAAHLKVGT---HGTTYGGNPLA 284
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-34
Identities = 109/338 (32%), Positives = 164/338 (48%), Gaps = 50/338 (14%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA- 136
G P S G+ + D+DGN+YID+ G+ G +GH+ +V AL + + + T F
Sbjct: 35 GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVM 94
Query: 137 --PCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192
+E LAE + + P + V F+NSG EA +++AR +T R+ II F +H
Sbjct: 95 MYEPYIE--LAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFH 152
Query: 193 GHAD----------PFLVKAGSGVATLGLPDSPGV-----------PKGATYETLTAPFN 231
G P+ K G G P +P V P+G T E
Sbjct: 153 GRTLMTMTMTSKVKPY--KFGFG------PFAPEVYKAPFPYEYRRPEGLTEEQYDDFM- 203
Query: 232 DVSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ +N F E IAA+++EPV G GFI P F+ +R I E+G L + DE+
Sbjct: 204 -IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ 262
Query: 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
TGF R A E+F V PDL T+ K +G G+P+ GR++IM+ AP G + GT +
Sbjct: 263 TGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAP-GEL--GGTYA 319
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386
G+PL A + L +++ E LN EL + +++
Sbjct: 320 GSPLGCAAALAVLDIIEK----ENLNDRAIELGKVVMN 353
|
Length = 451 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 31/320 (9%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
S VR++ P F +G + D++G EY+D++ G +GH + + + ++
Sbjct: 12 SNVRSY--PRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ 69
Query: 130 KGT---SFGAPCLLENVLAEMVISAVPSIEM---VRFVN-SGTEACMGVLRLARAFTGRE 182
G + L++ E +++ +P +M ++F SG +A ++LA+ +TGR
Sbjct: 70 SGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRT 129
Query: 183 RIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPF 230
+I F G +HG L G GV + P P G E +
Sbjct: 130 NVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN-- 187
Query: 231 NDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
+ EN E+ + + AA+ILE + G G +A ++L IR +T+++ LI DE
Sbjct: 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDE 247
Query: 288 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346
V GF R A E+ G+ PD + K +GGGLP+ + + PAG GT
Sbjct: 248 VQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAG---HTGT 303
Query: 347 LSGNPLAMTAGIHTLKRLKE 366
GN LAM G L K+
Sbjct: 304 FRGNQLAMVTGTEALNYWKD 323
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-33
Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 21/316 (6%)
Query: 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENV 143
S + + + D++GNEYID+ GH ++AA+ + +++ T P
Sbjct: 28 SAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVT 87
Query: 144 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201
LAE + + P F +G EA +++ARA TGR +I F G +HG ++
Sbjct: 88 LAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT--YMTM 145
Query: 202 AGSG-VA--TLGLPDSPG----VPKGATYETLTAPFNDVSALENLFENN--KGEIAAIIL 252
A +G VA +G PG VP + ++ + + A+E LF+++ ++AAII
Sbjct: 146 ALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ-DSLDAIERLFKSDIEAKQVAAIIF 204
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311
EPV G GF + + AIRR+ E+G ++I DEV +GF R A +++ PDL T
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMT 264
Query: 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
+ K + GG+P+ G +IM+ AP G GT +GNPLA+ A L + + E
Sbjct: 265 MAKSLAGGMPLSGVVGNANIMDAPAPGG---LGGTYAGNPLAVAAAHAVLNIIDKESLCE 321
Query: 372 YLNKITGELTQGIIDA 387
N++ L +IDA
Sbjct: 322 RANQLGQRLKNTLIDA 337
|
Length = 421 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 98/350 (28%), Positives = 142/350 (40%), Gaps = 79/350 (22%)
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 144
F S KG ++D++G EY+D +GH D + A+ E L
Sbjct: 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQ-------------AGTL 47
Query: 145 AEM--VISAVPSIEMVR------------FVNSGTEACMGVLRLARAFTGRER------- 183
A + V +P +E+ + F NSGTEA ++ AR + R R
Sbjct: 48 AHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQ-RVRAPDKKDP 106
Query: 184 -------IIKFEGCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATYET 225
+ F +HG TLG P P +P G T+
Sbjct: 107 AASSATEFVSFSNSFHGR-------------TLGALALTSKEQYRTPFEPLMP-GVTF-- 150
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285
+ ++ A L + KG+ AA+ +EPV G G +FL +R + E GALL+F
Sbjct: 151 --VEYGNLEAARKLIQ--KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVF 206
Query: 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA-GPMYQ 343
DEV G R Y A E +GV PD+ TL K + GGLP+GA + E VA A P
Sbjct: 207 DEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGLPIGAV----LVTEKVASAINPGDH 262
Query: 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393
T +G PL A + L ++ +PG + K L + + H
Sbjct: 263 GSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPH 312
|
Length = 382 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 21/291 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
I F +G+++ D DG +Y+D+ G +G QV AL + G + +P L
Sbjct: 12 AIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQAL--QKQAGLIWHSPNLYL 68
Query: 142 NVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
N L E V + + + F NSG EA +++AR TG++ II F+ +HG +
Sbjct: 69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSM 128
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259
G G GVP +Y A FND+++++ L N AA++LE V G S
Sbjct: 129 SATGQDKIKDGF--GDGVP-HFSY----AIFNDLNSVKALVNKNT---AAVMLELVQGES 178
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 318
G + DF+ A+ +E G LLI DEV TG R A E++G+ PD+ TL K +
Sbjct: 179 GVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLAN 238
Query: 319 GLPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
G+PVGA + + A G T GN L+M A TL + G
Sbjct: 239 GVPVGAMLAKSSL----GGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285
|
Length = 375 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 7e-32
Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 19/283 (6%)
Query: 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMVISAV 152
D GNE+ID +G +G +GH + V+AA+ + K L L +LA+ + +
Sbjct: 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALT 130
Query: 153 P-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVAT 208
P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 131 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGAL--SATAKPA 188
Query: 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPK 265
P P +P G + F D+ A+ K ++AAIILEP+ G G I P
Sbjct: 189 FRKPFMPLLP-GFHH----VAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 323
+L A+R + E GALLI DEV TG R A E+ GV PD+ L K +GGG +P+G
Sbjct: 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIG 303
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
A + V P T GNPLA A + T+ L E
Sbjct: 304 ATIATEAVFS-VLFDNPFLHTTTFGGNPLACAAALATINELLE 345
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-31
Identities = 97/319 (30%), Positives = 140/319 (43%), Gaps = 43/319 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC--- 138
P+V +GS++WD +G Y+D+ IGH +V+AA+ E + + AP
Sbjct: 36 PMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-APAHAN 94
Query: 139 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197
+ A ++ P + V F N G +A +R+AR TGR +++ YHG
Sbjct: 95 DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHG---- 150
Query: 198 FLVKAGSGVATLG----LPDSPGVPKGATYETLTAPFNDVS-------------ALENL- 239
GS + G P+ G + PF S AL +L
Sbjct: 151 ---GTGSAINLTGDPRRWPNDTGRAGVVHF---FGPFLYRSEFHATTEEEECERALAHLE 204
Query: 240 ----FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E IAAI+LE V G +G + P P +L +R + +G +LI DEVM GF R
Sbjct: 205 RVIELEG-PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRT 263
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPL 352
A E+FGV PDL T K + G +P+G I A Y G T SG+PL
Sbjct: 264 GKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR--PYPGGLTYSGHPL 321
Query: 353 AMTAGIHTLKRLKEPGTYE 371
A A + T+ ++E G E
Sbjct: 322 ACAAAVATINAMEEEGIVE 340
|
Length = 451 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-31
Identities = 111/355 (31%), Positives = 158/355 (44%), Gaps = 72/355 (20%)
Query: 64 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG----PAIIGHADDQ 119
MP N R FK+ P + S +G + D DG + +D G+ G A GH +
Sbjct: 20 MPFTAN---RQFKA---APRLLVSAEGMYYTDADGRKILD--GTAGLWCCNA--GHGRPE 69
Query: 120 VLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLR 173
++ A+ G P E LAE + P ++ V F NSG+E+ L+
Sbjct: 70 IVEAVARQAATLDYAPAFQMGHPLAFE--LAERLAELAPGGLDHVFFTNSGSESVDTALK 127
Query: 174 LARAF------TGRERIIKFEGCYHG-------------HADPFLVKAGSGV----ATLG 210
+A A+ R R+I E YHG + F GV TL
Sbjct: 128 IALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG-LLPGVDHLPHTLD 186
Query: 211 LPD---SPGVPK-GATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 265
LP+ S G P+ GA D LE L + IAA+I+EP+ G++G + P
Sbjct: 187 LPENAFSKGQPEHGAE-------LAD--DLERLVALHDASTIAAVIVEPMAGSAGVLVPP 237
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVG 323
+L +R I ++G LLIFDEV+TGF RL A E FGVTPD+ T K + G +P+G
Sbjct: 238 KGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMG 297
Query: 324 AYGGRRDIME--MVAPAGPM-----YQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
A +I + M P + Y T S +P+A AG+ TL +E +E
Sbjct: 298 AVIASDEIYDAFMQGPEYAIEFFHGY---TYSAHPVACAAGLATLDIYREEDLFE 349
|
Length = 445 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 96/312 (30%), Positives = 145/312 (46%), Gaps = 37/312 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 139
P+ +G + D++GN+Y+D + G +GH VL ++ + + G L
Sbjct: 41 PLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTT 100
Query: 140 -LENVLAEMVISAVPSIE---MVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
L++ +E ++S +P ++F SG +A ++LA+ +TGR +I F G YHG
Sbjct: 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGM 160
Query: 195 ADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242
L G GV + P P G E V AL FEN
Sbjct: 161 THGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEA------GVKALTYYFEN 214
Query: 243 NKGEI-------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
++ AA+ILE + G G ++L IR +T+++G LLI DEV GF R
Sbjct: 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFART 274
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354
A E+ G+ PD+ + K +GGGLP+ G +++ + P G GT GN LAM
Sbjct: 275 GKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKE-FDAWQPGG---HTGTFRGNQLAM 330
Query: 355 TAGIHTLKRLKE 366
G+ TLK LKE
Sbjct: 331 ATGLTTLKILKE 342
|
Length = 459 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 8e-30
Identities = 99/307 (32%), Positives = 147/307 (47%), Gaps = 56/307 (18%)
Query: 95 DIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGAPCLLEN------VLAE 146
D+DGN ID GS G A+ +G++ +V+ A+ E + + F C + +AE
Sbjct: 52 DVDGNRLIDL-GS-GIAVTSVGNSAPRVVEAVREQVAR---FTHTCFMVTPYEGYVAVAE 106
Query: 147 MVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-------- 196
+ P R NSG EA +++AR++TGR+ ++ F+ YHG +
Sbjct: 107 QLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAK 166
Query: 197 --PFLVKAGSGVATLGLPDSPGVPKGATYET-LTAPFNDVSALEN-----------LFEN 242
P+ K+G G P +P V Y ++ P+ D L + E
Sbjct: 167 SMPY--KSGFG------PFAPEV-----YRAPMSYPYRDPKGLATDGEEAAARAITVIEK 213
Query: 243 NKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299
G +AA+I+EP+ G GFI P FL A+ +ENG + I DEV TGF R A
Sbjct: 214 QVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA 273
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
E+ G+ PDL T K I GGLP+ A GR +IM+ P G GT GNP+A A +
Sbjct: 274 CEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGG---LGGTYGGNPVACAAALA 330
Query: 360 TLKRLKE 366
++ ++E
Sbjct: 331 AIETIEE 337
|
Length = 443 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 95/330 (28%), Positives = 139/330 (42%), Gaps = 72/330 (21%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--------TS 133
P+ +G ++ D++G ++ID + G +GH V+ A+ + + T+
Sbjct: 46 PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTT 105
Query: 134 ----------FGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRE 182
F L E E I +F +GT+A L+L + TGR
Sbjct: 106 PVKDQFVQDLFA--SLPEAFAREAKI---------QFCGPTGTDAVEAALKLVKTATGRS 154
Query: 183 RIIKFEGCYHGHADPFLVKAGS------------GVATL----------GLPDSPGVPKG 220
++ F+G YHG + L G+ GV L GL GV
Sbjct: 155 TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214
Query: 221 ATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
Y LENL ++ + + AA+ILE V G G I ++L +RRIT+
Sbjct: 215 LHY------------LENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE 262
Query: 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336
E G LI DE+ +GF R A E+ G+ PD+ L K IGG LP+ R +
Sbjct: 263 EAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWLDTW-- 320
Query: 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
P AGT GN +AM AG TL+ +KE
Sbjct: 321 --QPGAHAGTFRGNQMAMAAGSATLRYIKE 348
|
Length = 464 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 102/321 (31%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS---FGAP 137
+V + +GS +WD G EY+D +GH D ++AAL E K TS + AP
Sbjct: 24 VVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAP 83
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR---AFTGR----ERIIKFEGC 190
L LAE +++A E V NSGTEA ++L R + GR I+ F G
Sbjct: 84 PLK---LAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGS 140
Query: 191 YHGHADPFLVKAGSGVATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNK 244
+HG TL + PK YE L FNDV ALE
Sbjct: 141 FHGR-------------TLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG-- 185
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303
G++AA++LEP+ G G + P FL +R + ++ ALL+ DE+ G R A
Sbjct: 186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQE 245
Query: 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
VTPD+ TL K +GGG P+GA + E + T GNPLA L++
Sbjct: 246 QVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGA---HGTTFGGNPLAAAVARVALRK 302
Query: 364 LKEPGTYEYLNKITGELTQGI 384
L P + + + L G+
Sbjct: 303 LASPQIAANVARQSAALRAGL 323
|
Length = 408 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 3e-27
Identities = 98/322 (30%), Positives = 138/322 (42%), Gaps = 68/322 (21%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
PI +G++++ DG E ID + SW A GH + A+ E + + L+
Sbjct: 25 PIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDR---------LD 75
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEA-------CMGVLRLARAFTGR 181
+V LA+ +++ P ++ V F +SG+ A + R R GR
Sbjct: 76 HVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRN-RGEPGR 134
Query: 182 ERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYET 225
R + G YHG HA P L + T P P G T
Sbjct: 135 SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE----QVTAPFP-----PDGYEQAT 185
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 284
L ALE L E + GEIAA I+EP+V G G + P +L +RRI +G LLI
Sbjct: 186 L-------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLI 238
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 339
FDE+ TGF R A E GV+PD+ L K + GG LP+ A +I E A
Sbjct: 239 FDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAK 298
Query: 340 PMYQAGTLSGNPLAMTAGIHTL 361
+ + + NPLA A +L
Sbjct: 299 AFMHSPSYTANPLACAAANASL 320
|
Length = 423 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-26
Identities = 102/346 (29%), Positives = 148/346 (42%), Gaps = 54/346 (15%)
Query: 64 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
MP N R FK P + + KG + DG +D GH +++ A
Sbjct: 17 MPFTAN---RQFKK---APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEA 70
Query: 124 LGE---TMKKGTSFG----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176
+ + +F L N +AE+ A + V F NSG+E+ L++A
Sbjct: 71 VRAQAGELDYAPAFQMGHPKAFELANRIAEI---APGGLNHVFFTNSGSESVDTALKIAL 127
Query: 177 AF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLG---------LPDSPGVPKGA 221
A+ R R+I E YHG + G V + LP +P
Sbjct: 128 AYHRARGEGSRTRLIGRERGYHG-----VGFGGISVGGIVPNRKAFGALLPGVDHLPH-- 180
Query: 222 TYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271
T + F+ LE L ++ IAA+I+EPV G++G + P +L
Sbjct: 181 TLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQR 240
Query: 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRR 329
+R I ++G LLIFDEV+TGF RL A +YFGVTPDL T K + G +P+GA
Sbjct: 241 LREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSS 300
Query: 330 DIMEMV---APAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 371
+I + AG + G T SG+PLA A + TL + G
Sbjct: 301 EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLT 346
|
Length = 442 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 93/331 (28%), Positives = 135/331 (40%), Gaps = 58/331 (17%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK----GTS 133
V + +G ++ D G Y+D S G A+ +GH+ +V+AA+ + + TS
Sbjct: 11 ATLPVAVAGEGIYLIDATGKRYLD--ASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS 68
Query: 134 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 186
F E LA+ +++A P +E V FV+ G+EA L+LAR + R I
Sbjct: 69 FFTTEPAE-ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIA 127
Query: 187 FEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245
YHG+ TLG L + + L + VS E G
Sbjct: 128 RRQSYHGN-------------TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAG 174
Query: 246 E------------------------IAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENG 280
E +AA + E VVG +G + P P + IR + G
Sbjct: 175 ESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYG 234
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 338
LLI DEVM G R A E GV PDL T+ K +G G P+GA I + +A
Sbjct: 235 VLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADG 294
Query: 339 GPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368
+Q G T G+ A A + + + E G
Sbjct: 295 SGFFQHGHTYLGHATACAAALAVQRVIAEDG 325
|
Length = 443 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 86/298 (28%), Positives = 131/298 (43%), Gaps = 28/298 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
PIV +G + D +GN Y+D + ++ GH +++ AL + K T +
Sbjct: 23 PIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVT-LTSRAFHS 81
Query: 142 NVLAEMV--ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCY 191
+ L ++ + +MV +N+G EA ++ AR + + II EG +
Sbjct: 82 DQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNF 141
Query: 192 HGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250
HG + + G P PG+ K P+ D+ AL+ N AA
Sbjct: 142 HGRTMAAVSLSSEEEYKRGFGPMLPGIKK--------IPYGDLEALKAAITPNT---AAF 190
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
++EP+ G +G P FL A R + KE L I DE+ TG R A ++ VTPD+
Sbjct: 191 LVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDM 250
Query: 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
LGK +GGG P+ RDI+ + P T GNPLA I L+ L+E
Sbjct: 251 YILGKALGGGVFPISCVAANRDILGVFTPGS---HGSTFGGNPLACAVSIAALEVLEE 305
|
Length = 396 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 4e-22
Identities = 93/335 (27%), Positives = 137/335 (40%), Gaps = 72/335 (21%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGP--AIIGHADDQVLAALGETMKK--------GTSFGAPC 138
KG +++D +GN+Y D GS G A IGH ++ A+ E ++ TS A
Sbjct: 21 KGVYLYDQNGNKYFD--GSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPA-- 76
Query: 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYH 192
E + ++ + + FVNSG+EA +++A R G+ +I+ YH
Sbjct: 77 --EKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYH 134
Query: 193 GHADPFLVKAGSGVATLG-----------------LPDSPGVPKGATY---ETLTAPFND 232
G T+G L D P + Y P
Sbjct: 135 G-------------ITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ 181
Query: 233 VSA---LENLFENNKGE-IAAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDE 287
++ LE E E IAA I EP++G +G + P + I+ I L I DE
Sbjct: 182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADE 241
Query: 288 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG 345
VMTG R A E++GV PD+ TLGK +G G P+ A +ME + +G
Sbjct: 242 VMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSG 301
Query: 346 -TLSGNPLAMTAGI--------HTL-KRLKEPGTY 370
TLS NPL+ + H L ++ E G Y
Sbjct: 302 HTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEY 336
|
Length = 447 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 87/354 (24%), Positives = 138/354 (38%), Gaps = 64/354 (18%)
Query: 68 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127
V S R+F P VF+ KGS +WD DG EYID+ G GH + ++ AL +
Sbjct: 10 VRSYCRSF------PTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDY 63
Query: 128 MKKGTSFGAPCLLENVLAEMVISAVPSIE-MVRFVNS-----------------GTEACM 169
+ + ++ + ++ E + F GT A
Sbjct: 64 LAD----------DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVE 113
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGATYET-L 226
L+LAR TGR ++ F +HG L G+ G+P S Y+ L
Sbjct: 114 SALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSR--MPYDGYL 171
Query: 227 TAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
+ ++ E L E++ + AA+ILE V G G ++L + ++ + + LL
Sbjct: 172 GGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILL 231
Query: 284 IFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAP 337
I D++ G G +F G+ PD+ L K I G GLP+ + ++ P
Sbjct: 232 IVDDIQAG----CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLA--------LTLIKP 279
Query: 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
P GT GN LA L+ +E + E+ Q +D
Sbjct: 280 ELDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR 333
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 9e-21
Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 37/313 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
P+V G+ + D+DGN +ID++ A G++ +++ A+ E + G +
Sbjct: 36 PLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHS 95
Query: 136 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
+ +AE + P IE V F SG++A +++++ T R I+ F G YHG
Sbjct: 96 ERAIR---VAEKLAEISP-IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHG 151
Query: 194 HA------DPFLVKAGSGVATLGLPDSPGVPKGATYETL------TAPFNDVSALENLFE 241
F G + L +P+ +P Y P ++ + E
Sbjct: 152 QTLGATSVAAFQSSQKRGFSPL-MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLE 210
Query: 242 N-------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 293
N E+AA+ EP+ G++G + P +F ++++ E+G LL+ DEV TG R
Sbjct: 211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGR 270
Query: 294 LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A E+F V PDL GK + G+ + GR+++M++ + + + T + NP+
Sbjct: 271 TGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTSGSALL----TPAANPVI 326
Query: 354 MTAGIHTLKRLKE 366
A TL+ ++E
Sbjct: 327 SAAAEATLEIIEE 339
|
Length = 457 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-20
Identities = 90/317 (28%), Positives = 132/317 (41%), Gaps = 56/317 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFG-- 135
+V +G +WD DGN Y+D + ++ GH ++LAA+ E + T +F
Sbjct: 24 DVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRND 83
Query: 136 --APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERII 185
AP E ++A+ V +NSG EA ++ R + G+ II
Sbjct: 84 QLAPLYEE-------LAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEII 136
Query: 186 KFEGCYHGH--------ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
+HG DP + G G P +PG PF D ALE
Sbjct: 137 VCADNFHGRTLSIVGFSTDP-DARGGFG------PFTPGFR--------VVPFGDAEALE 181
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296
N A ++EP+ G +G I P + +R + N LI DE+ TG R
Sbjct: 182 AAITPNT---VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK 238
Query: 297 GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAM 354
A+E+ G+ D+T +GK + GG PV A +++ ++ P Q G T GNPLA
Sbjct: 239 LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG----QHGSTFGGNPLAC 294
Query: 355 TAGIHTLKRLKEPGTYE 371
LK L E G E
Sbjct: 295 AVARAALKVLTEEGMIE 311
|
Length = 401 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-20
Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 50/351 (14%)
Query: 74 AFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGT 132
++S +P+V + +GS+++DI+G +Y+D + G W A+ G ++ +++AA E + K
Sbjct: 64 GWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTAL-GGSEPRLVAAATEQLNKLP 122
Query: 133 ---SF----GAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAFT---G 180
SF P L LA+ ++ + +M V F NSG+EA ++L + G
Sbjct: 123 FYHSFWNRTTKPSL---DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALG 179
Query: 181 RE---RIIKFEGCYHGHADPFLVKAG-SGVATL----GLP-------DSP-----GVPKG 220
R + I YHG L+ A SG+ L LP D P +P G
Sbjct: 180 RPNKKKFIARSKSYHGST---LISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLP-G 235
Query: 221 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279
T E + D LENL E IAA I EPV+G G I P + I+ + K+
Sbjct: 236 ETEEEFSTRLAD--NLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY 293
Query: 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337
L I DEV+ F RL + + + PDL +L K + +P+GA +I +++
Sbjct: 294 DILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS 353
Query: 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
G T SG+P++ + LK KE E++NKI GI
Sbjct: 354 QSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGI 404
|
Length = 504 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-20
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 37/305 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 138
PI F G + D G Y+D + +GHA +V+AA + T +
Sbjct: 607 PIKFVRGWGVWLIDNRGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLNTNTRYLHDA 664
Query: 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH--- 194
++ AE + + +P + + FVNSG+EA LRLARA TG+ I + YHG
Sbjct: 665 IVA--YAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTE 722
Query: 195 -----ADPFLVKAGSG----VATLGLPDS-------PGVPKGATYETLTAPFNDVSALEN 238
F K G G V +PDS P G + A +
Sbjct: 723 LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAE-----QIAA 777
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY 296
+ +G A I E + +G I +L + + + G + I DEV GF R+ ++
Sbjct: 778 MAAKGRG-PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSH 836
Query: 297 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
A E GV PD+ T+GK IG G P+GA R+I + + M T GNP++
Sbjct: 837 WWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIAD--SFDNGMEYFNTFGGNPVSCAI 894
Query: 357 GIHTL 361
G+ L
Sbjct: 895 GLAVL 899
|
Length = 1013 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 90/313 (28%), Positives = 135/313 (43%), Gaps = 34/313 (10%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENV-LAEMVISAVP 153
DG ID + SW A+ G+ ++ AA + K + FG V LA+ ++ +P
Sbjct: 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP 101
Query: 154 -SIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHG---HA----DPFL 199
S+ + F +SG+ A +++A + R + YHG HA DP
Sbjct: 102 PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDP-- 159
Query: 200 VKAGSGVATLGLP-----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254
V G+ LP P + G + + L++L E EIAA+ILEP
Sbjct: 160 VTGMHGLFNHSLPVQYFLPQPSIKFGEEWND-----EAIEPLQDLLEQKGDEIAALILEP 214
Query: 255 VV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312
VV G G P +L R + + G LLIFDE+ TGF R A E+ GV PD+ +
Sbjct: 215 VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI 274
Query: 313 GKIIGGG-LPVGAYGGRRDIMEMV--APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369
GK + GG L + A I + + A T NPLA +++ L E
Sbjct: 275 GKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPW 334
Query: 370 YEYLNKITGELTQ 382
+ + +I +L Q
Sbjct: 335 QQNIQRIEAQLKQ 347
|
Length = 429 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 37/273 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 138
P++ + +G ++D++GNEY D V S + GH ++ A+ E + K T G
Sbjct: 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN 98
Query: 139 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCY 191
+ +LAE +I VP ++ V + +SG A +++A + ++R + + Y
Sbjct: 99 VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAY 158
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV-----------------S 234
HG + A S V + L V +E + P+
Sbjct: 159 HGDT----IGAVS-VGAIDLFHQ--VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLE 211
Query: 235 ALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292
LE L + EIAAII+EP+V G G I +L +R + + L I DEV TGF
Sbjct: 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271
Query: 293 RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA 324
R A E+ VTPD+ T GK + GG LP+
Sbjct: 272 RTGKMFACEHENVTPDIMTAGKGLTGGYLPIAI 304
|
Length = 460 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 91/323 (28%), Positives = 136/323 (42%), Gaps = 59/323 (18%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA-------LGETMKKGTSFGAPCLLE 141
+G+ + DG Y+D V SW + GHA+ ++ AA L + M G + P +
Sbjct: 54 EGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTH-EPAVQ- 111
Query: 142 NVLAEMVISAVPS------IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEG 189
LAE +++ P + V + ++G+ L++A R R R I E
Sbjct: 112 --LAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALEN 169
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP---GVPKGATYETLTAPFND-------------- 232
YHG + L + D P V E+L AP D
Sbjct: 170 GYHGET----------IGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYA 219
Query: 233 ---VSALENLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEV 288
AL+ LFE + GEI A+ILEP + +G + P +L R + +GA LI DE+
Sbjct: 220 LQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEI 279
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAGPMYQ 343
TGF R A E GV PDL L K + GG LP+ A + + + +
Sbjct: 280 ATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLH 339
Query: 344 AGTLSGNPLAMTAGIHTLKRLKE 366
+ + +GNPLA A + TL +
Sbjct: 340 SHSYTGNPLACAAALATLDIFAD 362
|
Length = 472 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 52/312 (16%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 138
+V +G+ + DI GN Y+D + G W +G+ ++ A E +K + F
Sbjct: 28 NATMVVAKAEGAWVTDIQGNRYLDGMSGLWC-VNVGYGRKELAEAAYEQLKTLSYF---- 82
Query: 139 LLENVLAEMVISAVPSIE-------------MVRFVNSGTEACMGVLRLARAF------T 179
+ S P+I+ ++ F NSG+EA ++AR +
Sbjct: 83 -------PLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEP 135
Query: 180 GRERIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLT 227
R + I YHG++ L G G + PD +P + +
Sbjct: 136 HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYD 195
Query: 228 APFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286
V ++ + E IAA+I+EP++ G + P D++ A++ I +++GALLI D
Sbjct: 196 LE--CVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISD 253
Query: 287 EVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGP---M 341
EV+ GF R +GV PD+ T+ K I LP+ A +++I E G
Sbjct: 254 EVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHF 313
Query: 342 YQAGTLSGNPLA 353
T GNP A
Sbjct: 314 RHVNTFGGNPAA 325
|
Length = 451 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 46/310 (14%)
Query: 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPCLLENVLAEMV 148
H++D+ G Y+D V + ++GH ++ AA + F + E +E +
Sbjct: 578 HLFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAE--FSERL 633
Query: 149 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207
+ P ++ V VNSG+EA +RLA A +GR ++ YHG A V+
Sbjct: 634 AALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT-----VATDAVS 688
Query: 208 TL---------GLPD------SPGVPKGATYETLTAP--FNDVSA-LENLFENNKGEIAA 249
T PD SP +G +A DV A LE L + +G +A
Sbjct: 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG-LAG 747
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------ 303
I EPV GN+G IA P +L + + G + I DEV G YG YF
Sbjct: 748 FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG----YGRLGHYFWGFEQQ 803
Query: 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLK 362
GV PD+ T+ K +G G P+GA RR+I E + G + G G+P++ G+ L
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTG---GSPVSCRIGMAVLD 860
Query: 363 RLKEPGTYEY 372
L+E E
Sbjct: 861 VLREEKLQEN 870
|
Length = 972 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 88/315 (27%), Positives = 126/315 (40%), Gaps = 38/315 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--------KGTS 133
PI+ G +++DIDG + +D VG +GH ++V A+ + GT+
Sbjct: 25 PIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTT 84
Query: 134 FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKF 187
L L +M A + V F + G+++ L+LAR + R + I
Sbjct: 85 HPRAIELSYELIDMF--APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISL 142
Query: 188 EGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND----------VSAL 236
+ YHG H V + P PG T PF + L
Sbjct: 143 KQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLL 202
Query: 237 ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E IAA I EPV G G I P +F +R + +G LLI DEV+TGF R
Sbjct: 203 EREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRT 262
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA--YGGRRDIMEMVA----PAGPMYQAGTL 347
+GV PD+ L K I G +P+GA R I + G + T
Sbjct: 263 GSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNAR--IADAFEANADFGGAIMHGYTY 320
Query: 348 SGNPLAMTAGIHTLK 362
SG+P+A A + TL
Sbjct: 321 SGHPVACAAALATLD 335
|
Length = 449 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL 139
G ++ ++ +G ++ D DG Y+D +G +G+ +++ A+ + ++ +
Sbjct: 33 GSLVIVEA-EGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGD 91
Query: 140 LENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR------ERIIKFE 188
+ N LA + P + V G+ A LR + + II
Sbjct: 92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRG 151
Query: 189 GCYHGHADPFLVKAGSGVAT--------------LGLPDSPGVPKGATYETLTAPFND-- 232
YHG +L + +G A L P+ P G + A F D
Sbjct: 152 DAYHGST--YLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMS----EAAFCDFL 205
Query: 233 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
V E+ + + IAA I EP++G+ G I P P + +R I + L I DEV+TG
Sbjct: 206 VDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265
Query: 292 F-RL-AYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVA-PAGP--MYQAG 345
F RL + ++ FG+ PD+ T K + G P+GA ++++++ P ++ G
Sbjct: 266 FGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHG 325
Query: 346 -TLSGNPLAMTAGI 358
T SG+P+A A +
Sbjct: 326 FTYSGHPVACAAAL 339
|
Length = 466 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-18
Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 38/315 (12%)
Query: 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 143
V S +G ++ D+DG +Y+D+ G+ +G+ V+ + E M K F +P N
Sbjct: 57 VLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAK-LPF-SPRRFTNE 113
Query: 144 ----LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
AE + + V F GT A L+LAR TG +++ +HG +
Sbjct: 114 TAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDA 173
Query: 199 LVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSA--------LENLFENNKGEIAA 249
+ G G+ P GV + + F D LE + E +G I A
Sbjct: 174 ISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK-EGGIGA 232
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
I E V N+ P + +R I ++ LLI DE+ G R + +G+ PD
Sbjct: 233 FIAEAV-RNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291
Query: 309 LTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLS-------GNPLAMTAGIHT 360
+ +GK +GGGL P+ A M+ A +S +PL A + T
Sbjct: 292 ILCIGKGLGGGLVPIAA---------MITKDK-YNTAAQISLGHYTHEKSPLGCAAALAT 341
Query: 361 LKRLKEPGTYEYLNK 375
++ +++ G E +
Sbjct: 342 IEVIEQEGLLEKVKA 356
|
Length = 459 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-18
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 44/338 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA----- 136
P V +G H+WD DG Y+D + +G+ + AA M++ +
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96
Query: 137 -PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 188
P ++E L+E++ S +P + NSG+EA ++R R + ++ +I
Sbjct: 97 HPAVIE--LSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRW 154
Query: 189 GCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATY----ETLTAPFNDV 233
YHG + LG +PD + + Y E A F
Sbjct: 155 NGYHG--------STLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRR 206
Query: 234 SAL---ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
+AL E + E +A + EP G G I P + I+RI ++ LL DEV+
Sbjct: 207 AALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG 266
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 347
GF R A E+FG PD ++ K + G +P+G + I E + G ++ G T
Sbjct: 267 GFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY 326
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
SG+P+A I LK L++ G + TG Q +
Sbjct: 327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL 364
|
Length = 460 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 87/299 (29%), Positives = 135/299 (45%), Gaps = 39/299 (13%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG----APCLLENVLAEMVIS 150
DG +D + SW AI G+ Q+ AA+ + + FG P + + ++V
Sbjct: 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAI--ELCRKLVAM 98
Query: 151 AVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSG 205
+E V +SG+ A +++A + R+R + YHG D F G
Sbjct: 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHG--DTF------G 150
Query: 206 VATLGLPDSP--GVPKGATYETLTAP-----F------NDVSALENLFENNKGEIAAIIL 252
++ PD+ + KG E L AP F D++ L ++ EIAA+IL
Sbjct: 151 AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVIL 210
Query: 253 EPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
EP+V G G P++L +R++ G LLI DE+ TGF R A E+ G+ PD+
Sbjct: 211 EPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDIL 270
Query: 311 TLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
LGK + GG + + A R++ E ++ AG T GNPLA +L L+
Sbjct: 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES 329
|
Length = 428 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-17
Identities = 89/320 (27%), Positives = 137/320 (42%), Gaps = 55/320 (17%)
Query: 89 KGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK--------GTSFGAPCL 139
+G ++WD +GN+ +D G W + G+ ++ A M++ T+
Sbjct: 40 EGVYLWDSEGNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYYNTFFKTTHPPAIE 98
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG 193
L LAE+ A P V F NSG+EA VLR+ R + ++ II + YHG
Sbjct: 99 LAAKLAEV---APPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155
Query: 194 HADPFLVKAGS----------------GVATLGLPDSPGVPKGATYETLTAPFNDVSA-- 235
V S G+ + P G T E F +A
Sbjct: 156 ST----VAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEE----FGLAAARQ 207
Query: 236 LE----NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE L +N +AA I EP+ G G I P + I+RI ++ LL+ DEV+ G
Sbjct: 208 LEAKILELGADN---VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICG 264
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME-MVAPAGPMYQAGTLS 348
F R ++FG+ PDL T+ K + G +P+GA G + E ++ G T S
Sbjct: 265 FGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYS 324
Query: 349 GNPLAMTAGIHTLKRLKEPG 368
G+P+A + L+ L++ G
Sbjct: 325 GHPVAAAVALANLRILRDEG 344
|
Length = 456 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 78/314 (24%), Positives = 117/314 (37%), Gaps = 37/314 (11%)
Query: 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----S 133
V +G ++WD G Y+D + +GH ++ A + S
Sbjct: 32 DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS 91
Query: 134 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 186
+ P +E LAE + + P + V F G+EA +LA+ + G+ ++I
Sbjct: 92 YAHPPAIE--LAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVIS 149
Query: 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVP---------------KGATYETLTAPFN 231
YHG A +G+ P P VP G E
Sbjct: 150 RAIAYHG--TTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAA 207
Query: 232 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
D +E E + +AA+ LEPV G P P + +R I LL+ DEV+
Sbjct: 208 D--RIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC 265
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 347
F RL E FG PD+ T K I G P+GA + E M+ G T
Sbjct: 266 AFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF 325
Query: 348 SGNPLAMTAGIHTL 361
G+P++ + L
Sbjct: 326 GGHPVSAAVALANL 339
|
Length = 460 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 79/332 (23%)
Query: 89 KGSHMW--DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV--- 143
+G +W D +G Y+D V SW + GHA+ ++ + + + + LE+V
Sbjct: 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ---------LEHVILA 85
Query: 144 ---------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKF 187
L+E ++ P + + ++G+ A L+++ R ++R +
Sbjct: 86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTL 145
Query: 188 EGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
YHG P L+ + PD P+G ++E +
Sbjct: 146 TNSYHGETLAAMSVGDVALFTETYKPLLLD----TIKVPSPDCYLRPEGMSWEEHSR--R 199
Query: 232 DVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
+ +E + EIAA+I+EP++ G G P +L +R G LI DE+
Sbjct: 200 MFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAV 259
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQA---- 344
GF R A E G+ PD L K + GG LP+ A V +YQA
Sbjct: 260 GFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAA----------VLTTDTVYQAFYDD 309
Query: 345 -GTL---------SGNPLAMTAGIHTLKRLKE 366
TL +GNPLA A + TL ++
Sbjct: 310 YPTLRAFLHSHSYTGNPLACAAALATLDIFEQ 341
|
Length = 466 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 83/318 (26%), Positives = 124/318 (38%), Gaps = 60/318 (18%)
Query: 88 VKGSHMW--DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
+G W D DG Y+D + SW + GHA+ ++ AAL + + LE+ +
Sbjct: 41 ARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLD---------TLEHAML 91
Query: 146 EMVISAVPSIEMVR--------------FVNSGTEACMGVLRLA------RAFTGRERII 185
P+IE+ F + G A L+++ R + +
Sbjct: 92 AGCTHE-PAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFV 150
Query: 186 KFEGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
YHG DP L++ VA+ PD+ G G T + A
Sbjct: 151 CLANGYHGETIGALGVTDVALFKDAYDP-LIRHAHVVAS---PDARGARPGETAADVAA- 205
Query: 230 FNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
++ + LF G+IAA+I+EP+V +G P +L +R + G LI DE+
Sbjct: 206 -RALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEI 264
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQ 343
G R A E GV PD L K I GG LP+ R I
Sbjct: 265 AVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLH 324
Query: 344 AGTLSGNPLAMTAGIHTL 361
+ + +GNPLA A + TL
Sbjct: 325 SHSYTGNPLACRAALATL 342
|
Length = 453 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAGSGVATLGLPDSP 215
GT A L+LAR TGR I+ F +HG + + G+GV L +
Sbjct: 112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHK-RQGAGVP---LNNVT 167
Query: 216 GVPKGATYETLTAP-FNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNA 271
+P Y+ + ++ LE L E++ + AA+I+E V G G ++L
Sbjct: 168 RMP----YDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223
Query: 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLP 321
+ ++ +++ LLI D++ G G +F G+TPD+ TL K I G GLP
Sbjct: 224 LAKLCRKHDILLIVDDIQAG----CGRTGTFFSFERAGITPDIVTLSKSISGYGLP 275
|
Length = 425 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 7e-14
Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 41/340 (12%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALG---ETMKKG 131
+ + G + + S G + DG+ ID + SW A GH ++ AA +TM
Sbjct: 16 YAAPGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH- 74
Query: 132 TSFGAPCLLENV-LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------GRER 183
FG + L +++ ++ V + +SG+ + +++A ++ R R
Sbjct: 75 VMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTR 134
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG----VPKGATYETLTAPF--------N 231
++ + YHG D F A + + D G + KG E + AP
Sbjct: 135 LLTWRSGYHG--DTF--------AAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQ 184
Query: 232 DVSALENLFENNKGE-IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
++S E E +AAII+EP+V G G + +R + ++ LLI DE+
Sbjct: 185 EISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA 244
Query: 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQA 344
TGF R A GVTPD+ +GK + GG + A + ++++ G +
Sbjct: 245 TGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHG 304
Query: 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
T NPLA +L+ ++ + + +I EL G+
Sbjct: 305 PTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGL 344
|
Length = 422 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 8e-14
Identities = 93/343 (27%), Positives = 143/343 (41%), Gaps = 52/343 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK---GT---SF 134
V S KG+ + D G++ +D + G W +G+ + ++ A E M++ T F
Sbjct: 29 VTVLASAKGATLTDASGHQLLDAFAGLWC-VNVGYGQESIVEAAAEQMRELPYATGYFHF 87
Query: 135 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL------ARAFTGRERIIKFE 188
G+ + + A++ A S+ V F G++A +R A +++ I E
Sbjct: 88 GSEPAIR-LAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLE 146
Query: 189 GCYHGHADPFLVKAGSGVATL-------GLP-------DSPGV---PKGATYETLTAPFN 231
YHG + G+G+ L LP SP P G + + A
Sbjct: 147 RGYHGSS-----SVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA-- 199
Query: 232 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
V+AL + +AA EP+ G+ G I P +L A+R +E G L + DEV+T
Sbjct: 200 SVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT 259
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA-------YGGRRDIMEMVAPAGPM 341
GF R A E GV PDL T+ K + G +P+GA Y G D AP G
Sbjct: 260 GFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG 319
Query: 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
Y T S +P++ G+ L+ E G K G+
Sbjct: 320 Y---TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL 359
|
Length = 459 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 95/371 (25%), Positives = 150/371 (40%), Gaps = 82/371 (22%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYID-YVGS 107
L S EA ++A L P + R + G P+V + +G +++D G YI+ G
Sbjct: 3 MLPNSLEARDIAYHLHP---YTNARRHEEEG--PLVIERGEGIYVYDDAGKRYIEGMAGL 57
Query: 108 WGPAIIGHADDQVLAALGETMKKGT---SFG----APCLLENVLAEMVISAVPSIEM--V 158
W A+ G ++ +++ A MKK +F P + LAE +++ P + M V
Sbjct: 58 WSVAL-GFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVID---LAEKLVAMAP-VPMSKV 112
Query: 159 RFVNSGTEACMGVLRL------ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212
F NSG+EA V++L A +++II + YHG V S T GLP
Sbjct: 113 FFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHG------VTIASASLT-GLP 165
Query: 213 DS--------PGV------------PKGATYETLTAPFNDVSALENLFENNKGE-IAAII 251
++ + G + E + LE L + IAA I
Sbjct: 166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLAN--ELEALILAEGPDTIAAFI 223
Query: 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
EPV+G G I P + I+ + ++ LL+ DEV+ GF R E FG+ PD+
Sbjct: 224 GEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL 283
Query: 311 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQA--------GTL------SGNPLAMT 355
+ K + P+ A V +Y GT SG+P+A
Sbjct: 284 VMSKQLSSSYQPLSA----------VLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAA 333
Query: 356 AGIHTLKRLKE 366
+ L ++E
Sbjct: 334 VALENLAIIEE 344
|
Length = 460 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 78/318 (24%), Positives = 119/318 (37%), Gaps = 87/318 (27%)
Query: 59 VAKELMPGGVNSPVRAFKSVGGQPIVFDSVK--GSHMWD-IDGNEYIDYVGSWGPAIIGH 115
A+ + P V+ + V G +V D + GS++ D G Y+D + + +G
Sbjct: 2 AAQRVAPDDVHEVLARHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGM 61
Query: 116 ------ADDQVLAALGET-MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNS----- 163
D + A LG + K ++ S V ++EM RFV++
Sbjct: 62 NHPALADDPEFRAELGRAALNKPSN----------------SDVYTVEMARFVDTFARVL 105
Query: 164 -------------GTEACMGVLRLA-------RAFTGRE-----RIIKFEGCYHGHA--- 195
G A L++A G + +++ G +HG +
Sbjct: 106 GDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYT 165
Query: 196 ------DPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENL-------- 239
DP P D+P + E L +V ALE
Sbjct: 166 LSLTNTDPRKTAR---FPKFDWPRIDNPKLRFPLPGEDL----EEVEALEAEALAQARAA 218
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
FE + +IA I EP+ G G +P+F A+R + E+ ALLIFDEV TG L G
Sbjct: 219 FERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLT--GT 276
Query: 299 --AQEYFGVTPDLTTLGK 314
A + GV PD+ GK
Sbjct: 277 AWAYQQLGVRPDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 69/329 (20%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF------GAPCLLEN 142
+G + D G YID +G+ +V A+ E K+ + G +
Sbjct: 40 EGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASIT- 98
Query: 143 VLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT---GR---ERIIKFEGCYHGHA 195
L++ +I P+ + V + SG++A ++L + GR ++II YHG
Sbjct: 99 -LSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHG-- 155
Query: 196 DPFLVKAGSGVAT---LGLP------DSP--------------GVPKGATYETLTAPFND 232
SGV T GL D P G + E +A
Sbjct: 156 --------SGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSA--YC 205
Query: 233 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE L + IAA I EPV+G G + P + AI+ + K+ LLI DEV+TG
Sbjct: 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG 265
Query: 292 F-RL-AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG-------GRR--DIMEMVAPA-G 339
F RL + G+ Y G+ PDL T+ K GL AY G + D++E + G
Sbjct: 266 FGRLGSMFGSDHY-GIEPDLITVAK----GL-TSAYAPLSGSIVGEKVWDVLEQGSDEHG 319
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
+ T SG+P+ A + L L+
Sbjct: 320 AIGHGWTYSGHPICAAAALANLDILEREN 348
|
Length = 461 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 73/285 (25%), Positives = 106/285 (37%), Gaps = 59/285 (20%)
Query: 78 VGGQPIVFD--SVKGSHMWD-IDGNEYIDYVGSWGPAIIGH------ADDQVLAALGE-T 127
G +V D +GS + D DG Y+D + +G D A LG
Sbjct: 14 TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA 73
Query: 128 MKKGTSFGAPCLLENVLAEMV-----ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182
+ K ++ + +A V + P++ + F+ G A L+ A + R
Sbjct: 74 VNKPSN---SDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRH 130
Query: 183 ------------RIIKFEGCYHG---------HADPFLVKAGSGVATLGLP--DSPGVPK 219
+++ +HG + DP T P D P +
Sbjct: 131 NQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDP--------RKTARFPKFDWPRIDN 182
Query: 220 GATYETLTAPFND-VSALEN--------LFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270
L AP D V ALE F +IA I EP+ G G +P+FL
Sbjct: 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242
Query: 271 AIRRITKENGALLIFDEVMTGFRL-AYGGAQEYFGVTPDLTTLGK 314
A+R + E+ ALLIFDEV TG L A + GV PD+ GK
Sbjct: 243 AMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 196 DPFLVKAGSGVATLGLP---DSPGVPKGATYETLTAPFN---DVSALENLF--------- 240
DP V +G + LP S + T+E+ F+ D + L +
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLD 574
Query: 241 ----ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
G IAA+I+EPV+ G G + P F A+ ++ + +IFDEV TG RL
Sbjct: 575 EYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRL 634
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--- 350
A E G PD+ K++ GGL P+ A ++ E A GP L G+
Sbjct: 635 GVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFE--AFRGPSKLDALLHGHSYT 692
Query: 351 --PLAMTAGIHTLKRLKEPGT 369
P+ A L+ K+P T
Sbjct: 693 AHPMGCAAAAKALQWYKDPST 713
|
Length = 817 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 73/349 (20%), Positives = 121/349 (34%), Gaps = 72/349 (20%)
Query: 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSP 215
R ++ ++ + F G+E + F Y A GV +TL
Sbjct: 37 GSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYA---------ANDGVLSTLAGKGDL 87
Query: 216 -------------GVPKGATYETLTAPFNDVSALENLFENNKGEIAA--IILEPVVGNSG 260
G+ + + + ND+ LE L + I+ E V G
Sbjct: 88 IISDSLNHASIIDGI-RLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146
Query: 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFGVTPDLT-----TLGK 314
IAP L + + K+ GA+L DE G +G E FG D TLGK
Sbjct: 147 DIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGK 202
Query: 315 IIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEY 372
G VG Y G +++++ + + T S P A + L+ L+ P E
Sbjct: 203 AFGA---VGGYIAGSKELIDYLRSYARGFIFST-SLPPAVAAAALAALEVLQGGPERRER 258
Query: 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN--FEDAKKSETTKFARF 430
L + L +G+ + G G + + +D K+ F
Sbjct: 259 LQENVRYLRRGLKELGFPVGGSPS--------------HIIPPLIGDDPAKAV-----AF 299
Query: 431 YRGMLEEGVYFAPSQFEAG--------FT-SLAHSSDDIQHTITAAEKV 470
+LE G+Y ++ + S AH+ +DI + A ++V
Sbjct: 300 SDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 231 NDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
ND+ LE L E N I+ E V G IAP L + + ++ GALL DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208
Query: 288 V-MTGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
G G G E+FG+ P+ + TLGK +G G Y G +++ +
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRA 265
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKE 366
+ T + P A + L+ L+E
Sbjct: 266 RPFIFST-ALPPAVAAAALAALRILEE 291
|
Length = 388 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212
P + FV SGT A L + +I + AG
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAG--------A 64
Query: 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
VP DV+ LE L K +A I++ P + G + P L I
Sbjct: 65 KPVPVPVDDAGY----GGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVP----LKEI 114
Query: 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFG 304
R+I KE G LL+ D G G G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296
E+L + +AAII+EP+ G PDF +R ITK++ I DEV TG
Sbjct: 242 EDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG----- 296
Query: 297 GG------AQEYFGVT--PDLTTLGK 314
G A E++ + PD+ T K
Sbjct: 297 VGATGKFWAHEHWNLDDPPDMVTFSK 322
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 67/240 (27%), Positives = 94/240 (39%), Gaps = 66/240 (27%)
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTP--DLT--TLG 313
G IAP L I + + AL++ D+ GF G G E+FGV D+ TLG
Sbjct: 188 GDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLG 243
Query: 314 KIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLA---MTAGIHTLKRLKEPGT 369
K +GG G Y GR+++++ + Y L N LA + A I L+ L+E
Sbjct: 244 KALGGA--SGGYTAGRKEVIDWLRQRSRPY----LFSNSLAPAIVAASIKVLELLEESDE 297
Query: 370 Y-EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425
+ L + +G+ AG H I I M G DAK +
Sbjct: 298 LRDRLWENARYFREGMTAAGFTLGPGEHPI----IPVMLG------------DAKLA--- 338
Query: 426 KFARFYRGMLEEGVYFAPSQFEAGFT---------------SLAHSSDDIQHTITAAEKV 470
F +LEEGVY GF+ S AH+ + + I A EKV
Sbjct: 339 --QEFADRLLEEGVYVI------GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390
|
Length = 397 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 41/193 (21%)
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTPDLT----TLG 313
G IAP L+ I + + AL++ DE TGF G G+ E GV + TLG
Sbjct: 184 GVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLG 239
Query: 314 KIIGGGLPVGAY-GGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-Y 370
K +GG G + R++++E++ + P + +L P + A I L+ L+
Sbjct: 240 KALGGAS--GGFTTARKEVVELLRQRSRPYLFSNSLP--PAVVGASIKVLEMLEASNELR 295
Query: 371 EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427
+ L T + + AG K A H I PV + DA ++
Sbjct: 296 DRLWANTRYFRERMEAAGFDIKPADHPII---------------PVMLY-DAVLAQ---- 335
Query: 428 ARFYRGMLEEGVY 440
RF R +LEEG+Y
Sbjct: 336 -RFARRLLEEGIY 347
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 229 PFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
NDV LE L E N+GE +I+ + V G IAP L + + + GA L+ D+
Sbjct: 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDD 183
Query: 288 VM-TGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY 325
TG G G E+FG+ P+ + TL K +G GAY
Sbjct: 184 AHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAY 225
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 40/253 (15%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
D ALE + ++ +G +A + L + + KE+ LL+ DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185
Query: 291 GFRLAYGGAQEY---FGVTPD-----LTTLGKIIG-GGLPVGAYGGRRDIME-MVAPAGP 340
GF +G + + + K G G VG G ++ + A P
Sbjct: 186 GF--VFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
Y + A A L E + + + L G+ AG
Sbjct: 244 FY--SSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLS-----VLPS 296
Query: 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY-FAPSQFEAG----FTSL 453
+G F T + +LEE GVY S F T
Sbjct: 297 QAGF--FLLTGLDPEAALA-----------LAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 454 AHSSDDIQHTITA 466
+ ++++ + A
Sbjct: 344 GGTEEELEELLEA 356
|
Length = 357 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 68 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 124
V S R+F P+VFD KGS ++D DG EYID+ G GH + + AL
Sbjct: 14 VRSYCRSF------PVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQAL 64
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.95 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.95 | |
| PRK07324 | 373 | transaminase; Validated | 99.95 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.95 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.95 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.95 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.95 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.94 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.94 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.94 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.94 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.94 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.94 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.94 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.94 | |
| PLN02187 | 462 | rooty/superroot1 | 99.94 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.94 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.94 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.94 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.94 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.94 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.93 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.93 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.93 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.93 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.93 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PLN02656 | 409 | tyrosine transaminase | 99.93 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.93 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.93 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.93 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.93 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.93 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.93 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.93 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.93 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.93 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.93 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.93 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.93 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.93 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.93 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.93 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.92 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.92 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.92 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.92 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.92 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.92 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.92 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.92 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.92 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.92 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.92 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.92 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.91 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.91 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.91 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.91 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.9 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.9 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.9 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.9 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.89 | |
| PLN02231 | 534 | alanine transaminase | 99.89 | |
| PLN02397 | 423 | aspartate transaminase | 99.89 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.89 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.88 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.88 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.88 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.88 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.88 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.88 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.87 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.87 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.87 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.87 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.86 | |
| PLN02368 | 407 | alanine transaminase | 99.85 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.85 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.85 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.85 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.85 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.84 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.84 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.84 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.84 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.84 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.83 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.83 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.82 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.82 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.82 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.82 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.81 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.81 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.81 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.8 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.8 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.8 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.8 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.8 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.79 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.79 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.79 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.78 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.77 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.76 | |
| PLN02651 | 364 | cysteine desulfurase | 99.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.76 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.76 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.75 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.75 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.75 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.74 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.74 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.74 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.73 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.73 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.73 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.73 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.73 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.73 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.72 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.72 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.72 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.72 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.72 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.71 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.71 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.71 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.71 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.7 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.69 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.69 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.68 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.68 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.68 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.67 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.67 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.67 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.67 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.67 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.67 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.66 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.66 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.66 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.66 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.66 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.65 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.65 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.63 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.63 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.63 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.63 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.62 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.62 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.6 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.6 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.6 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.6 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.6 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.59 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.57 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.57 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.57 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.56 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.56 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.55 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.54 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.54 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.54 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.53 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.52 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.52 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.52 | |
| PLN02263 | 470 | serine decarboxylase | 99.51 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.5 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.49 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.48 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.47 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.46 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.46 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.46 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.46 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.45 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.45 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.42 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.42 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.41 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.4 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.39 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.39 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.38 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.38 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.36 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.36 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.34 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.34 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.26 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.24 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.23 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.23 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.21 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.17 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.17 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.16 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.13 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.1 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.09 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.07 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.07 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.04 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.01 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.01 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.98 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.93 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.88 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.85 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.8 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.76 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.76 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.6 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.56 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.53 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.44 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.43 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.42 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.4 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.38 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.32 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.25 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.05 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 97.93 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.77 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.74 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.67 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.6 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.03 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 96.89 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.24 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.25 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 86.21 |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-90 Score=655.94 Aligned_cols=427 Identities=58% Similarity=0.994 Sum_probs=411.8
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
..++|+++++++++++|+|+++++|.|.+++++|+++++++|+|+||+|||+||||+++|+++.+||+||.|.+|+.+++
T Consensus 3 ~~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l 82 (432)
T COG0001 3 QFPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQL 82 (432)
T ss_pred CccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
++|.+|+.|++.+.+++|.+++++|..|+|.|+||||||++.|||+||++|+|++||+|+++|||+++.++...|++...
T Consensus 83 ~~G~~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t 162 (432)
T COG0001 83 ERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAAT 162 (432)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCccc
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999888877
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|.+.|+|.....+++.+||||+++++++++++++++|+||+||+.+|.|.++|.++||++|++||++||++||+|||
T Consensus 163 ~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 77799999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-C
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (476)
+||||....+++++||++||++||+|.+|||+|+|++.+++++|+.+.+.++.++.+|+++||++++|++++|+.+.+ +
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred hhhcccCCcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 999998888999999999999999999999999999999999999999988999999999999999999999999987 5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
..++++.+++++|+++|++...+++++..+.+.|.|+.+.|.+..+.++.++...+.+...++.+.|+++||++.|+.+.
T Consensus 323 ~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~e 402 (432)
T COG0001 323 GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE 402 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcccc
Confidence 68999999999999999999999999999999999999999988899999998888888888989999999999999888
Q ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 448 AGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 448 ~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..+++..||+++||+++++++++++++.
T Consensus 403 a~flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 403 AGFLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred ceeeecccCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-81 Score=629.08 Aligned_cols=473 Identities=80% Similarity=1.278 Sum_probs=400.2
Q ss_pred CcccccccccccccccCcccccccccCC-CCccccccccccccccccccCChhHHHHHHHHhhhCCCCCCCccccccccC
Q 011856 1 MAATITGVGVGLGLSCSSKLTNRFSSSA-GSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVG 79 (476)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (476)
|+++++|.++..+.+..+.......... +.+++.+++.+++.+ .+.+.+++|+++++++++++|+|+++++|.|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~ 79 (474)
T PLN02482 1 MAAALAGSALGLSCSAKPSARRSSSQRRRAVRSSVIKMAVSVEE-KKKFTTTKSEEIFKAAKELMPGGVNSPVRAFKSVG 79 (474)
T ss_pred CchhhhccccccccccccccccCccccccccccchhhhhhhccc-cccCCChHHHHHHHHHHhhCCCCCCCcchhhcccC
Confidence 6666665544433333332222122211 122245666676654 44677889999999999999999999999887777
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEE
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVR 159 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~ 159 (476)
++|+++.+++|+|+||+|||+||||.++++++++||+||+|.+|+.+|++++..++.+++.+.+|+|+|++.+|+.++++
T Consensus 80 ~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~ 159 (474)
T PLN02482 80 GQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVR 159 (474)
T ss_pred CCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEE
Confidence 78999999999999999999999999999999999999999999999999988888889999999999999998889999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
|+|||+||++.|+|+||++|++.+||.++++|||+++..+...+.+......+...+++.....+++.+||||+++++++
T Consensus 160 f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~ 239 (474)
T PLN02482 160 FVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKL 239 (474)
T ss_pred EeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHH
Confidence 99999999999999999999999999999999999987766544433222234455666555567889999999999999
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCC
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGG 319 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G 319 (476)
++++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|||+|.+++++++|+.||++||||++++|
T Consensus 240 l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~gK~lggG 319 (474)
T PLN02482 240 FEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKVIGGG 319 (474)
T ss_pred HHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEecchhhCC
Confidence 98777789999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+|+|++++++++++.+.+.++.++.+||++||++|++++++|+.++++++++++++++++|+++|+++..+++.+..+.+
T Consensus 320 ~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~ 399 (474)
T PLN02482 320 LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGY 399 (474)
T ss_pred CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcc
Confidence 99999999999999987545677889999999999999999999988899999999999999999999887765544445
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.|++++|..+++.++.+...++......+.+.|+++||++.+.+++..++++.||++|||++++++++++.++
T Consensus 400 v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~~psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 400 ISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred cceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 556899999876666665555556666778999999999999987655456799999999999999999998763
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-80 Score=582.55 Aligned_cols=370 Identities=32% Similarity=0.469 Sum_probs=340.0
Q ss_pred cCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCC
Q 011856 78 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSI 155 (476)
Q Consensus 78 ~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~ 155 (476)
|++.|+++.+|+|+|+||.+|++||||.+|+++++|||+||.+++|+++|+++.+ +..+.++...+|+++|++..|..
T Consensus 21 Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~ 100 (404)
T COG4992 21 YGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFA 100 (404)
T ss_pred cCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccc
Confidence 3445899999999999999999999999999999999999999999999999954 45578999999999999999658
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhccC---CceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
++|+|+|||+||||+|+|+||.+++ +.+||.|.++|||++..+++.++.+.+..++ |..+ .+..+|||
T Consensus 101 d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~--------g~~~vpfn 172 (404)
T COG4992 101 DRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP--------GFRHVPFN 172 (404)
T ss_pred cEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC--------CceecCCC
Confidence 9999999999999999999999987 7799999999999999999999886544332 3322 47889999
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|++++++++++ ++++||+||+|+++|+++++++||+++++||++||++||+||||||+ |+|++|+++|+|+.|||+
T Consensus 173 Di~al~~ai~~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~ 249 (404)
T COG4992 173 DIEALEAAIDE---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL 249 (404)
T ss_pred CHHHHHHHhcc---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEE
Confidence 99999999985 89999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|++|++|||+|+|++++++++.+.+. +..|++||++||++|+++.++|+.+.++++.+++++.+++|+++|+++..+
T Consensus 250 tlaK~LgGG~PigA~la~~~~~~~~~---~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~ 326 (404)
T COG4992 250 TLAKALGGGFPIGAMLATEEIASAFT---PGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRR 326 (404)
T ss_pred EeeccccCCccceeeEEchhhhhcCC---CCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999977777766 678999999999999999999999999999999999999999999999999
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
++++.++||.|+|+++++..+. ....+.+.|.++|+++.+.+.+.+|+ ++.+++|++++++++|+
T Consensus 327 ~~~v~~vRG~GLmiGiel~~~~-------------~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~ 393 (404)
T COG4992 327 YPLVKEVRGRGLMIGIELKEPY-------------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALE 393 (404)
T ss_pred CCceeeeecceeEEEEEecCcc-------------cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHH
Confidence 9999999999999999996531 23678899999999999998888877 79999999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+++...
T Consensus 394 ~~l~~~ 399 (404)
T COG4992 394 RALAAA 399 (404)
T ss_pred HHHHHh
Confidence 999864
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-76 Score=572.71 Aligned_cols=410 Identities=29% Similarity=0.424 Sum_probs=350.9
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
...++..++.++.+++++.++... .+|+++++++|+|+||+|||+||||.+++++.++||+||.|++|+.+|
T Consensus 13 ~~~~~~~~~~~r~~~~~~r~~~~~--------~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q 84 (447)
T COG0160 13 APGPKALELIERREEALARSYGRF--------RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQ 84 (447)
T ss_pred CCCcchHHHHHHHHHHhccccccc--------cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHH
Confidence 345667788888888877655431 259999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CCCC-CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhc
Q 011856 128 MKKGT--SFGA-PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 128 l~~~~--~~~~-~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
+++.. ++.+ +.+...+++|+|.+..|. .++++|+|||+|||++|+|+||.+|++..||.|.++|||++..+++++
T Consensus 85 ~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT 164 (447)
T COG0160 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLT 164 (447)
T ss_pred HHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhc
Confidence 99854 3333 348899999999999984 789999999999999999999999999999999999999999999999
Q ss_pred CCCCcc-CCC-CCCCCCCCCCCCceeeccCC---------CHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 203 GSGVAT-LGL-PDSPGVPKGATYETLTAPFN---------DVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 203 g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---------d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
+..... ..+ |..+++.....++.++.|+. ..+.+++.+.. .+.++|++|+||+|+++|.+.|+++|
T Consensus 165 ~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~f 244 (447)
T COG0160 165 GSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGF 244 (447)
T ss_pred cCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHH
Confidence 875433 111 22222222222333333322 13446664532 45689999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCC
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~ 347 (476)
|++|+++|++||++||+||||+|| |+|++|+++|+|+.|||+|+||++++|+|+|++++++++++ .. +..+.+||
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~---~g~~~~Tf 320 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WP---PGGHGGTF 320 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cC---CcccCCCC
Confidence 999999999999999999999999 99999999999999999999999999999999999999998 44 45688899
Q ss_pred CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHH
Q 011856 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427 (476)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 427 (476)
++||++|++++++|+.++++++.++..+++++++++|.++..+++.+.+|||.|+|++++|.++.. .+.|+.+..
T Consensus 321 ~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~-----t~~p~~~~~ 395 (447)
T COG0160 321 GGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRD-----TKEPDAELA 395 (447)
T ss_pred CcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCC-----CCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986531 234677888
Q ss_pred HHHHHHHHHCCeEeccCC--CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 428 ARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 428 ~~~~~~l~~~Gv~~~~~~--~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++...|+++|+++..++ .+.+++ +++++++++|+++++|++++.++
T Consensus 396 ~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 396 AKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 999999999999988887 455555 79999999999999999999875
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=576.94 Aligned_cols=425 Identities=49% Similarity=0.891 Sum_probs=372.1
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
.+++|.++++++++++|+|+++..|.+...+ +.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|
T Consensus 2 ~~~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q 81 (428)
T PRK12389 2 NFTKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEA 81 (428)
T ss_pred CChhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHH
Confidence 3578999999999999999998888775443 568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 128 l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
++++..++.+++...+|+++|.+..|+.++++|++||+||++.|+|+||.++++.+||.++++|||++++++..++....
T Consensus 82 ~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~ 161 (428)
T PRK12389 82 AENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPS 161 (428)
T ss_pred HHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCccc
Confidence 99877677889999999999999998788999999999999999999999999999999999999999999988775432
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (476)
....|...+++.....+++.+|+||++.+++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DE 241 (428)
T PRK12389 162 TLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDE 241 (428)
T ss_pred ccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 22123334444444457889999999999999987767899999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
|++|||++.+++++++|+.||++|+||++++|+|+|++++++++++.+.+.+...+++||++||++|++++++|+.++++
T Consensus 242 V~tG~Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~ 321 (428)
T PRK12389 242 VITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE 321 (428)
T ss_pred cccccccCcchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc
Confidence 99999888788889999999999999999999999999999999998864344678899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 446 (476)
++++++++++++|+++|+++..+++++.++ ++.| |++++|.+++..++.....++......+.+.|+++||++.+.+.
T Consensus 322 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 400 (428)
T PRK12389 322 GVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKY 400 (428)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCC
Confidence 999999999999999999988888888887 5555 88999976544333222233445567888999999999998766
Q ss_pred cceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.+++.+|++||++++++|+++++++
T Consensus 401 ~~~~~~l~~t~e~id~~~~~l~~~l~~~ 428 (428)
T PRK12389 401 EAWFLTTAHTEEDIEETLEAVDRAFAQL 428 (428)
T ss_pred CCeeecCCCCHHHHHHHHHHHHHHHHhC
Confidence 6677899999999999999999998763
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-72 Score=560.54 Aligned_cols=421 Identities=38% Similarity=0.648 Sum_probs=365.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
.++|.++++++++++|+|+++..|.|.+.+++|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++
T Consensus 4 ~~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~ 83 (433)
T PRK00615 4 IQEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE 83 (433)
T ss_pred cHHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999987666678999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh---HHhhcCCC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSG 205 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~ 205 (476)
++..++.+++...+|+++|.+.+|. .++|+|++||+||++.|+|+||.+++|.+||.+.++|||++++ .+..++..
T Consensus 84 ~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 84 RGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCC
Confidence 9877777889999999999999974 5799999999999999999999999999999999999999844 33333321
Q ss_pred CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
... .+...+ +.........++|||++++++.++++++++++||+||+++++|.+.|+++|+++|+++|++||++||+
T Consensus 164 ~~~--~~~~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~ 240 (433)
T PRK00615 164 LDT--LTHLVD-TDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIM 240 (433)
T ss_pred cCc--CCCCCC-CCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 000 011111 11122345778999999999999876678999999999999999999999999999999999999999
Q ss_pred eccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 286 DEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 286 DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
||||+|||+|.+|+++++|+.||++||||++|+|+|+|++++++++++.+.+.+..++++|+++||++|++++++|+.++
T Consensus 241 DEv~tG~R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~ 320 (433)
T PRK00615 241 DEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR 320 (433)
T ss_pred EcccccccccHhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh
Confidence 99999999998999999999999999999999999999999999999998654455688899999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 366 EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
++++++++++++++|+++|+++..+.+. +..++ .|+|++++|.+++.+++.+....+......+...|+++||++.+.
T Consensus 321 ~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 399 (433)
T PRK00615 321 EQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPS 399 (433)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCc
Confidence 8889999999999999999998776554 44555 899999999876555555554455666778999999999999988
Q ss_pred CCcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 445 QFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 445 ~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++...++..||++|||+++++++++++++
T Consensus 400 ~~~~~~ls~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 400 PFEASFLSSAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred cccccceecCCCHHHHHHHHHHHHHHHHHH
Confidence 766677899999999999999999999875
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=557.90 Aligned_cols=420 Identities=27% Similarity=0.402 Sum_probs=359.8
Q ss_pred cCChhHHHHHHHHhhhCCCCC-CCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGV-NSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
...++|.++++++++++|+|+ .+..+.|. .++|+++++++|+|+||+|||+||||.+++++.++||+||+|.+|+.+
T Consensus 25 ~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~--~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~ 102 (453)
T PRK07046 25 EAHPRSRALAARAAQHLLGGVPMHWMNDWP--TPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAE 102 (453)
T ss_pred hcChhhHHHHHHHHhhCCCCcccccccccC--CCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHH
Confidence 356789999999999999999 44444442 246999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 127 ~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
|++++..++.+++.+.+|+|+|++.+ +.++++|+|||+||++.|+|+||++|+|++||.|+++|||+++..+.....+.
T Consensus 103 q~~~~~~~~~~~~~~~~lAe~l~~~~-~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~ 181 (453)
T PRK07046 103 QARRGLTTMLPSEDAAWVGEELARRF-GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGR 181 (453)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCC
Confidence 99998778889999999999999998 48999999999999999999999999999999999999999887775431111
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
....+...+++.....+++.+||||++++++++. ++++++||+||+++++|.+.|+++||++|+++|++||++||+|
T Consensus 182 -~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~D 258 (453)
T PRK07046 182 -PVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVID 258 (453)
T ss_pred -CCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 0011223344444445678899999999999995 3589999999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC------CCCccccCCCCCcHHHHHHHHHH
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP------AGPMYQAGTLSGNPLAMTAGIHT 360 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~------~~~~~~~~t~~~~~~~~aaa~aa 360 (476)
||++ ||.|..+.++++|+.||++|+||+++||+|+|++++++++++.+.+ .+...+.+||++||++|++++++
T Consensus 259 EV~t-fr~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~ 337 (453)
T PRK07046 259 ETHT-ISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRAT 337 (453)
T ss_pred cccc-CccCCcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHH
Confidence 9999 7766666788899999999999999999999999999999998853 12345788999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc-chHHHHHHHHHHHHCCe
Q 011856 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-ETTKFARFYRGMLEEGV 439 (476)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv 439 (476)
|+.++++++++++++++++|+++|+++..+++++..+++.|+++.++|.+++..++.+...+ +......+...|+++||
T Consensus 338 L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv 417 (453)
T PRK07046 338 LAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGV 417 (453)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCC
Confidence 99998889999999999999999999988899999999999999999865544444433322 44556778889999999
Q ss_pred EeccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 440 YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 440 ~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++.+.+ +.++++..||++|||++++++++++++++
T Consensus 418 ~~~~~~-~~~~~~p~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 418 LITPFH-NMMLVCPATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred EEeccc-CcEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998753 44567778999999999999999998764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=537.97 Aligned_cols=423 Identities=60% Similarity=1.001 Sum_probs=365.3
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
+|+++++++++++|+|++++++.+...+++|+++.+++|+|+||.|||+||||.+++++.++||+||+|++|+++|++++
T Consensus 1 ~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~ 80 (423)
T TIGR00713 1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG 80 (423)
T ss_pred CcHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC
Confidence 47899999999999999988887755556799999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 132 TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 132 ~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
..++.+++...+|+++|++.++..++|+|++||+||++.|+|+||.++++++||.++++|||+++..+..++.+......
T Consensus 81 ~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~ 160 (423)
T TIGR00713 81 TSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGL 160 (423)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCC
Confidence 76777888899999999999986789999999999999999999999999999999999999988877765543222222
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
+..++++.......+.+|++|+++|+++++++++++++||+||+++++|.+.++++|+++|+++|++||++||+||+|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 240 (423)
T TIGR00713 161 PTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240 (423)
T ss_pred CCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccc
Confidence 33334433444567888999999999999866568999999999999999999899999999999999999999999999
Q ss_pred ccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
||+|.++.++++++.||++||||++++|+|+||+++++++++.+.+.....+++|+++||++|++++++|+.++++++.+
T Consensus 241 ~r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~ 320 (423)
T TIGR00713 241 FRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYT 320 (423)
T ss_pred cccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHH
Confidence 98887778888999999999999999999999999999999998754345678899999999999999999998878999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 451 (476)
+++++++++++.|+++..+++++.++++.|+|+++++..+...++.....++......+.+.|+++||++.+.+++.+++
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l 400 (423)
T TIGR00713 321 ELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFL 400 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceee
Confidence 99999999999999988888888889999999999997543332221122334445678889999999998776666788
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+..+|+++|++++++|+++++++
T Consensus 401 ~~~~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 401 SAAHTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred ECCCCHHHHHHHHHHHHHHHhhC
Confidence 87899999999999999998764
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=495.99 Aligned_cols=408 Identities=26% Similarity=0.344 Sum_probs=350.4
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
+++.+..+...+..++.+..+..++. ..|++|.+++|+|++|.+|++|||+.+|..+..+||+||+|++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~ls~~~~~~~-------~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~k 77 (442)
T KOG1404|consen 5 PYTGPSTDQVLQKRRAFLSPGLTSYY-------KKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVK 77 (442)
T ss_pred ccCCcchhhHHHHhhhcCCcceeccc-------cCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHH
Confidence 55566666666666666665554442 24999999999999999999999999999999999999999999999
Q ss_pred HHHhcC--CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC
Q 011856 127 TMKKGT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 127 ~l~~~~--~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
|+.+.. ..++.++...+||+.|.+.+| +.+.++|+|||+|||++|+++||.|++.-+||.+.++|||.+..++.+++
T Consensus 78 Ql~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~ 157 (442)
T KOG1404|consen 78 QLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTG 157 (442)
T ss_pred hhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhccccc
Confidence 998743 346778888999999999999 68899999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCC-CCCCCCCCCceeeccCCC----------HHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 204 SGVATLGLPDS-PGVPKGATYETLTAPFND----------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
.+.++..+|.. .++.+...++.++.++.+ .+++++.+.. .+..++++|+|++++.+|++.++++||++
T Consensus 158 ~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka 237 (442)
T KOG1404|consen 158 LSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKA 237 (442)
T ss_pred CCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHH
Confidence 88777666554 354444445555555543 3556666643 34579999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCc
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~ 350 (476)
..++|+++|.++|.||||+|| |+|.+|.++..|+.|||+|++|++|+|+|+|+++.++|+++.+.+ ...++.||++|
T Consensus 238 ~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~--~~~~fnTyggn 315 (442)
T KOG1404|consen 238 AYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQ--KSSHFNTYGGN 315 (442)
T ss_pred HHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHh--ccccccccCCC
Confidence 999999999999999999999 999999999999999999999999999999999999999999985 33488999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHH
Q 011856 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (476)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (476)
|++|++++++|++++++++.++..+.+.+|+++|.++.++++++.+|||.|+|++++++++.... ..|.......+
T Consensus 316 P~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~----~pp~~~~~~~i 391 (442)
T KOG1404|consen 316 PVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEP----KPPATAEGAVI 391 (442)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCC----CCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765322 23445556778
Q ss_pred HHHHHHCCeEeccCCCc--ceEE--eCCCcHHHHHHHHHHH
Q 011856 431 YRGMLEEGVYFAPSQFE--AGFT--SLAHSSDDIQHTITAA 467 (476)
Q Consensus 431 ~~~l~~~Gv~~~~~~~~--~~~~--~~~~t~e~i~~~~~~l 467 (476)
.+.+.++|+++..++.. .+|+ ++++|++|+|.+++.+
T Consensus 392 ~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 392 GEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 89999999999766533 3455 7999999998888865
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-68 Score=532.76 Aligned_cols=424 Identities=65% Similarity=1.078 Sum_probs=369.9
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
++|++++|++++++|+|.+++...+++++.+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~ 81 (426)
T PRK00062 2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK 81 (426)
T ss_pred chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998888877778999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 131 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 131 ~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
+..++++++...+|+++|++.+|+.++++|++||+||++.|++++|.++++++||.++++|||++.+++...+.......
T Consensus 82 ~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 161 (426)
T PRK00062 82 GLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLG 161 (426)
T ss_pred CCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccC
Confidence 76666788889999999999887788999999999999999999999999999999999999999888776554322111
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.+...+.+.......+.++|+|++++++.++++++++++||+||+++++|.+.++++||++|+++|++||+++|+||||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 241 (426)
T PRK00062 162 LPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT 241 (426)
T ss_pred CCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 12222222212235688899999999999976667899999999999999999999999999999999999999999999
Q ss_pred CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 291 g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|||+|.++..+++++.||++++||++++|+|+|++++++++++.+...+..++++|+++||++|++++++|+.+++++++
T Consensus 242 G~r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~ 321 (426)
T PRK00062 242 GFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFY 321 (426)
T ss_pred ccccCCccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHH
Confidence 99888888888999999999999999999999999999999999864445667889999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceE
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 450 (476)
+++++++++++++|+++..+++++.++++.|+|+++++.+++..++.....++......+...|+++||++.+.+++.++
T Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~ 401 (426)
T PRK00062 322 EELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGF 401 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCcee
Confidence 99999999999999998888898889999999999999754433332223345555678999999999999988777788
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 451 TSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.+|++||++++++|+++++++
T Consensus 402 ~~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 402 VSAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eeccCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999764
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-68 Score=535.93 Aligned_cols=415 Identities=22% Similarity=0.310 Sum_probs=339.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+.++.++.++.+++++... +.+.. ..|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~ 77 (451)
T PRK07678 4 TKQTDELLAKDEQYVWHGM----KPYNP--NATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLK 77 (451)
T ss_pred ccCHHHHHHHhhcccCCCc----ccccc--CCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHH
Confidence 5567788887666654322 11211 13899999999999999999999999999999999999999999999999
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhh
Q 011856 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
++..+ .+.++...+|+++|++.+|..++++|+|||+||++.|+|+||.++ ++.+||.++++|||++++++..
T Consensus 78 ~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~ 157 (451)
T PRK07678 78 TLSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAA 157 (451)
T ss_pred hcCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhc
Confidence 86433 357888899999999999876799999999999999999999986 5788999999999999999988
Q ss_pred cCCCCccCCC-CCCCCCCCCCCCceeeccC------CC---HHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 202 AGSGVATLGL-PDSPGVPKGATYETLTAPF------ND---VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 202 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~d---~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
++.......+ |..+++......+.+..++ +| ++.++++++ ++++++++||+||+++++|.+.|+++||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~ 237 (451)
T PRK07678 158 TGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMK 237 (451)
T ss_pred CCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHH
Confidence 7754322211 2223332222223333332 22 334677776 44578999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---CCccccC
Q 011856 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAG 345 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~~~~~~~ 345 (476)
+|+++|++||++||+|||+||| |+|.+|+++++|+.|||+|+||+++|| +|+|++++++++++.+... ....|++
T Consensus 238 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~ 317 (451)
T PRK07678 238 AVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVN 317 (451)
T ss_pred HHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCC
Confidence 9999999999999999999999 999998999999999999999999998 6999999999999988642 1346899
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
||++||++|++++++|+.++++++.+++++++++|+++|+++..+++.+.++++.|+|+++++..+... ....+..
T Consensus 318 T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~----~~~~~~~ 393 (451)
T PRK07678 318 TFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKET----KEPADND 393 (451)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcc----cCcCchH
Confidence 999999999999999999998999999999999999999988888899999999999999999753211 0111334
Q ss_pred HHHHHHHHHHHCCeEeccCCC------cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 426 KFARFYRGMLEEGVYFAPSQF------EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~~------~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....+...|+++||++.+.+. +.+++ ++.+|++|||+++++|+++++++
T Consensus 394 ~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 394 KVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred HHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 567888999999999976431 34555 68899999999999999999864
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-68 Score=534.90 Aligned_cols=421 Identities=19% Similarity=0.191 Sum_probs=337.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.+++++.++.+++++.+.... ..+..-...|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~ 81 (461)
T PRK07482 3 QKIDELLAWDRDHFFHPSTHL-GDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKE 81 (461)
T ss_pred ccHHHHHHhhhhhccCCcccc-cccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHh
Confidence 467778887777665443322 1111101238999999999999999999999999999999999999999999999998
Q ss_pred cCC----CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHH
Q 011856 131 GTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 131 ~~~----~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+.. .+++++...+|+++|++..| +.++++|+|||+||++.|+|+||.+ ++|.+||.++++|||++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~ 161 (461)
T PRK07482 82 LAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTG 161 (461)
T ss_pred cCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhh
Confidence 642 24678999999999999998 5789999999999999999999966 458899999999999999888
Q ss_pred hhcCCCCccCCC-CCCCCCCCCCCCceeecc----------CCCHHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 200 VKAGSGVATLGL-PDSPGVPKGATYETLTAP----------FNDVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 200 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
..++.......+ |...++...........+ .+++++|++++. ..++++++||+||+++++|.+.|+++
T Consensus 162 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~ 241 (461)
T PRK07482 162 SLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG 241 (461)
T ss_pred hccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHH
Confidence 877653222111 111111100000011100 014678888885 34568999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC----CCc
Q 011856 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GPM 341 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~----~~~ 341 (476)
|+++|+++|++||++||+|||+||| |+|.+|+++++|+.||++|+||+++||+ |+|++++++++++.+... +..
T Consensus 242 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~ 321 (461)
T PRK07482 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI 321 (461)
T ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence 9999999999999999999999999 9999999999999999999999999996 999999999999887531 234
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcc
Q 011856 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421 (476)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~ 421 (476)
.|++||++||++|++++++|+.++++++.+++++++++|+++|+++..+++.+.++++.|+|++++|.++.... .. ..
T Consensus 322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~-~~-~~ 399 (461)
T PRK07482 322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDR-TP-FD 399 (461)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcC-CC-CC
Confidence 68899999999999999999999999999999999999999999998889999999999999999997532110 00 00
Q ss_pred cchHHHHHHHHHHHHCCeEeccC-CCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 422 SETTKFARFYRGMLEEGVYFAPS-QFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~~~~~-~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++......+...|+++||++.+. ..+.+++ ++++|++||++++++|+++++++
T Consensus 400 ~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 400 PALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred hhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11123467889999999998653 1234443 79999999999999999999765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=529.45 Aligned_cols=391 Identities=25% Similarity=0.355 Sum_probs=328.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCC-CCe
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS-IEM 157 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~-~e~ 157 (476)
.|+++.+++|+|+||+|||+||||.+++++.++||+||+|.+|+.+|++++.+ ..+.++...+|+++|++..|+ .++
T Consensus 35 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 114 (451)
T PRK06062 35 NPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSK 114 (451)
T ss_pred CCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCE
Confidence 48999999999999999999999999999999999999999999999998643 346788899999999999984 789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CC--
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---ND-- 232 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d-- 232 (476)
|+|++||+||++.|+|+||.+++|.+||.++++|||++.+++..++........|...++........+.+++ +|
T Consensus 115 v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 194 (451)
T PRK06062 115 VFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEE 194 (451)
T ss_pred EEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHH
Confidence 9999999999999999999999999999999999999999998877543211112222222211122233333 33
Q ss_pred -----HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC
Q 011856 233 -----VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305 (476)
Q Consensus 233 -----~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~ 305 (476)
+++|+++++.+ ++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+
T Consensus 195 ~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv 274 (451)
T PRK06062 195 ECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC
Confidence 67888888643 3689999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHH
Q 011856 306 TPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT-GELTQG 383 (476)
Q Consensus 306 ~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~-~~l~~~ 383 (476)
.||++||||++++|+ |+|++++++++++.+.. ....+++||++||++|++++++|+.++++++.+++++++ ++++++
T Consensus 275 ~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~ 353 (451)
T PRK06062 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATFAD-RPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPG 353 (451)
T ss_pred CCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999995 99999999999998863 234577899999999999999999998888999999999 699999
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCc--CchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHH
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~ 459 (476)
|+++..+++.+.++++.|+|+++++..++.. .+... .........+.+.|+++||++.+.+ +.+++ ++.+|++|
T Consensus 354 L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gvl~~~~~-~~lrl~ppl~~t~~e 431 (451)
T PRK06062 354 LRELAERHPSVGEVRGLGVFWALELVADRETREPLAPY-GASSAAMAAVKAACKERGLLPFVNG-NRIHVVPPCTVTEDE 431 (451)
T ss_pred HHHHHhcCCcEEeEeccccEEEEEEcccccccCCCccc-chhhHHHHHHHHHHHHCCcEEeecC-CEEEEECCccCCHHH
Confidence 9999888888899999999999999743211 10000 0112345678899999999987643 34555 67999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
||+++++|+++++++
T Consensus 432 id~~~~~l~~~l~~~ 446 (451)
T PRK06062 432 VREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=514.31 Aligned_cols=390 Identities=28% Similarity=0.327 Sum_probs=328.8
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-C-CC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-S-IE 156 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~-~e 156 (476)
|+++.+++|.|+||.|||+|||..++||++++||++|+|.+|+.+|+++..+ ++..++...+|+++|++..| + .+
T Consensus 27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~ 106 (449)
T COG0161 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLD 106 (449)
T ss_pred ceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCcc
Confidence 8999999999999999999999999999999999999999999999998543 34456669999999999999 6 89
Q ss_pred eEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCcc-CCC-CCCCCCCCCCCCceeec
Q 011856 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVAT-LGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~ 228 (476)
+|+|++|||||++.|+|+|+.| ++|.++|...++|||.+.++++.+|..... ..+ +..++..+...+..+..
T Consensus 107 ~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~ 186 (449)
T COG0161 107 HVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRR 186 (449)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccccc
Confidence 9999999999999999999887 346679999999999999999988842211 111 11111111111111111
Q ss_pred cC---------CCHHHHHHHHhcCC-CCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc
Q 011856 229 PF---------NDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296 (476)
Q Consensus 229 ~~---------~d~~~le~~l~~~~-~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~ 296 (476)
+. ..++.||+++.+++ +++++||+||+.+. ||.+.|+++||++++++|++||++||+|||.||| |+|.
T Consensus 187 ~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~ 266 (449)
T COG0161 187 GFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK 266 (449)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch
Confidence 11 23677888888765 89999999999987 9999999999999999999999999999999999 9999
Q ss_pred cchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHH
Q 011856 297 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373 (476)
Q Consensus 297 ~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 373 (476)
+|+++++|++|||+|++|++++| +|+|++++++++.+.+.. .+.+.|+.||++||++|++|++.|++++++++.+++
T Consensus 267 ~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~ 346 (449)
T COG0161 267 MFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERV 346 (449)
T ss_pred hhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999 699999999999999875 356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc-eEEe
Q 011856 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTS 452 (476)
Q Consensus 374 ~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-~~~~ 452 (476)
++.+.+|.++|+++..+++.+.+||+.|++.++++..+....... +.....++...++++|++++|.+... +.++
T Consensus 347 ~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f----~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PP 422 (449)
T COG0161 347 AEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPF----EARVGARVRAAALERGLLIRPLGDVIYLMPP 422 (449)
T ss_pred HHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccch----hhhHHHHHHHHHHHCCeEEeecCCEEEEcCC
Confidence 999999999999976778999999999999999998653221100 23445678889999999999986421 2347
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+++|++|||++++++.+++++..
T Consensus 423 liit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 423 LIITREEIDELVDALREALDETL 445 (449)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998653
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-68 Score=492.65 Aligned_cols=412 Identities=44% Similarity=0.680 Sum_probs=354.8
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
.+.+....+...++++.+...+....+.++|+++++++|+.+||.||++||||.++|++..+||++|++.+++.+|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~ 88 (433)
T KOG1401|consen 9 KSEDASNAASVSMPGIVEEKTRIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKL 88 (433)
T ss_pred cCcccccchhhccccccccceEEeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhh
Confidence 34455556677788888888888888888999999999999999999999999999999999999999999999999995
Q ss_pred C--CCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCce------EEEEeCCCCCCchhHHhh
Q 011856 132 T--SFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRER------IIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 132 ~--~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~------ii~~~~~yhg~~~~~~~~ 201 (476)
. .+++......++++.+.+... +.++|+|+|||||||+.||++||.++..+. +|.|.++|||.+.+++..
T Consensus 89 ~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~ 168 (433)
T KOG1401|consen 89 GHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSV 168 (433)
T ss_pred eeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHh
Confidence 2 233444447889999888774 789999999999999999999999876554 999999999999999998
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 011856 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (476)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (476)
++...+.. |..+ ..+++..++|||..++++.++.+.+++++||+||++++||.+++.++|+..|+++|+++|+
T Consensus 169 ~~~s~y~~--~~~p-----~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~v 241 (433)
T KOG1401|consen 169 TGNSKYGL--PFDP-----IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGV 241 (433)
T ss_pred hcccccCC--CCCC-----CCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCc
Confidence 86654442 2222 2346888999999999999999988999999999999999999999999999999999999
Q ss_pred EEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHH
Q 011856 282 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360 (476)
Q Consensus 282 llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 360 (476)
+||+|||+||| |+|..|++++++++|||+|++|.++||+|+|++++++++++.+.+...++|++||++||++|.++..+
T Consensus 242 l~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~ 321 (433)
T KOG1401|consen 242 LLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKV 321 (433)
T ss_pred eEEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999877789999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe
Q 011856 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (476)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (476)
|+.+.++++++++.+.++.|++.|.+...+.+..... .+.|+++++++..+ +..+.+...........+...+++.|+
T Consensus 322 l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p-~~~~~d~~~~~~ll~~~~~~~~~~~gv 400 (433)
T KOG1401|consen 322 LDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP-VYKFADAAREQGLLILTLGKGLLEEGV 400 (433)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeec-hhhhhhhhhhhhHHHHHHhcccccceE
Confidence 9999999999999999999999999998887766655 88999999998653 333333332333444455566677889
Q ss_pred EeccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 440 YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 440 ~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++.|. ..++..+|+|.++++++++.+++.++-
T Consensus 401 ~i~P~----~~l~~~~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 401 RIAPI----YLLTVEHTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred EEecc----ccccccCcHHHHHHHHHHHHHHHHHhc
Confidence 98882 234567789999999999999998763
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-67 Score=527.60 Aligned_cols=391 Identities=22% Similarity=0.252 Sum_probs=323.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~----~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++... +++.++...+|+++|++.+| +.
T Consensus 28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 107 (459)
T PRK05965 28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL 107 (459)
T ss_pred CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc
Confidence 37899999999999999999999999999999999999999999999998542 24568888999999999998 67
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
++|+|++||+||++.|+|+||.+ +++.+||.++++|||++..++..++.......+ +..++.........+..
T Consensus 108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (459)
T PRK05965 108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRN 187 (459)
T ss_pred CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccc
Confidence 89999999999999999999988 457899999999999998888877653222111 11111100000001111
Q ss_pred cC-CC--------HHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 229 PF-ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 229 ~~-~d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
++ +| ++++++.++++. +++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 188 PVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 11 23 367888887543 689999999999999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
|+++++|+.|||+|+||+++|| +|+|++++++++++.+... ..+.|++||++||++|++++++|++++++++.++
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 347 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN 347 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999 4999999999999988532 1346889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
+++++++|+++|+++. +++.+.++++.|+|++++|..+....- ...++......+.+.++++||++.+.+...+++
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~--~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~ 424 (459)
T PRK05965 348 GQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATKT--PFDAALDPADRIFDRAYANGLVFRAFGDGVLGFA 424 (459)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEeccccccC--CCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEE
Confidence 9999999999999985 588899999999999999975321100 000112345678899999999998876444544
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++|++||++++++|+++++++
T Consensus 425 PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 425 PALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999865
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=527.68 Aligned_cols=374 Identities=26% Similarity=0.373 Sum_probs=328.3
Q ss_pred CCCeEEEeecC-CEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CC
Q 011856 80 GQPIVFDSVKG-SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 80 ~~p~~~~~~~G-~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.+|+++.+++| +|+||.|||+||||.+++++.++||+||+|.+|+.+|++++..+ +++++...+|+++|++..| +.
T Consensus 62 ~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~ 141 (459)
T PRK11522 62 DYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKL 141 (459)
T ss_pred CCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCC
Confidence 45889999999 99999999999999999999999999999999999999986433 3568889999999999998 47
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhccC---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
++++|+|||+||++.|+|+||.+++ +.+||.++++|||++.+++..++......+ ..+.. ..+..+|++|
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~--~~~~~-----~~~~~~~~~d 214 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKP--FMPLL-----PGFRHVPFGN 214 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccC--CCCCC-----CCCcccCCCC
Confidence 8999999999999999999999985 678999999999999999988776433211 11111 2466789999
Q ss_pred HHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc
Q 011856 233 VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (476)
Q Consensus 233 ~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD 308 (476)
.+++++.+++ +++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+|+++++|+.||
T Consensus 215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD 294 (459)
T PRK11522 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD 294 (459)
T ss_pred HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC
Confidence 9999998863 34579999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011856 309 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 309 i~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (476)
++|+||++|+| +|+|++++++++++.+.. .+..+++||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus 295 ivt~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 295 ILCLAKALGGGVMPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred EEEechhhhCCCccceeEEEcHHHHHHhcc-CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 699999999999987752 2456889999999999999999999998899999999999999999999
Q ss_pred hhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceE--EeCCCcHHHHHH
Q 011856 388 GKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSLAHSSDDIQH 462 (476)
Q Consensus 388 ~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~--~~~~~t~e~i~~ 462 (476)
..+++ .+.++++.|+|+++++.++ +....+.+.|+++||++.+.. ...++ +++.+|++|+|+
T Consensus 374 ~~~~~~~i~~VrG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~ 440 (459)
T PRK11522 374 AREYPDLVQEARGKGMLMAIEFVDN-------------EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQ 440 (459)
T ss_pred HHhCCCceeeEEeceeEEEEEecCc-------------hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHH
Confidence 88887 7889999999999999642 224578899999999997653 23444 478999999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
++++|+++++++
T Consensus 441 ~l~~l~~~l~~~ 452 (459)
T PRK11522 441 VLKAARKALAAM 452 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-67 Score=526.86 Aligned_cols=402 Identities=25% Similarity=0.366 Sum_probs=333.5
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
+.+++.+++++..++++.++.++ +|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+
T Consensus 15 ~~~~s~~~~~~~~~~~~~~~~~~---------~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~ 85 (443)
T PRK06058 15 PGPKSQALAERRAAAVAAGVGST---------LPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQV 85 (443)
T ss_pred CCccHHHHHHHHHHhhccccccC---------CCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHH
Confidence 34567788888888887765432 389999999999999999999999999999999999999999999999
Q ss_pred HhcCCC---CCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC
Q 011856 129 KKGTSF---GAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 129 ~~~~~~---~~~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
+++.++ ..+++...+|+++|++.+|+ .++++|++||+||++.|+|+||.++++++||.++++|||++.+++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~ 165 (443)
T PRK06058 86 ARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTA 165 (443)
T ss_pred HhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcC
Confidence 985422 24678889999999999974 3799999999999999999999999999999999999999999998776
Q ss_pred CCC-ccCCC-CCCCCCCCCCCCceeeccCCC---------------HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 204 SGV-ATLGL-PDSPGVPKGATYETLTAPFND---------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 204 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d---------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
... ....+ |..+++.. ..+..++++ ++.+++.+ .++++++||+||+++++|.+.|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~iAavi~EPi~g~gG~~~p~~ 239 (443)
T PRK06058 166 KSMPYKSGFGPFAPEVYR----APMSYPYRDPKGLATDGEEAAARAITVIEKQV--GADNLAAVIIEPIQGEGGFIVPAE 239 (443)
T ss_pred CCcccccccCCCCCCceE----cCCCcccccccccccchHHHHHHHHHHHHHhh--CCCceEEEEECCccCCCCCcCCCH
Confidence 421 11111 11111100 001122222 12223332 235899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~ 345 (476)
+||++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|+||++++|+|+|++++++++++.+. ...+.+
T Consensus 240 ~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~---~~~~~~ 316 (443)
T PRK06058 240 GFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPH---PGGLGG 316 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhcc---CCCCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999886 345788
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
||++||++|+|++++|+.++++++.+++++++++++++|+++..+++++.++++.|+|+++++.++.. ..++..
T Consensus 317 T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~ 390 (443)
T PRK06058 317 TYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGT------TEPDAE 390 (443)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCC------CCCcHH
Confidence 99999999999999999998899999999999999999999988889999999999999999975421 113444
Q ss_pred HHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 426 KFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....+.+.|+++||++.+.+. +.+++ ++++|+++||+++++|+++++++
T Consensus 391 ~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 391 LTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred HHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 567788999999999987542 34555 79999999999999999998763
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-67 Score=527.39 Aligned_cols=385 Identities=25% Similarity=0.359 Sum_probs=320.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCC-C-
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I- 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~~-~- 155 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++... .+++++...+|+++|.+..|. .
T Consensus 45 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 124 (464)
T PRK06938 45 IPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFA 124 (464)
T ss_pred CCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCccccc
Confidence 48999999999999999999999999999999999999999999999986321 245788899999999998873 2
Q ss_pred --CeEEEe-CCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 156 --EMVRFV-NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 156 --e~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
++++|+ |||+||++.|+|+||.++++.+||.++++|||++.+++..++.......+ +..+++ ..+.+|++
T Consensus 125 ~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~------~~~~~p~~ 198 (464)
T PRK06938 125 REAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGV------QFLPYPYD 198 (464)
T ss_pred ccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCc------EEeCCCcc
Confidence 478776 89999999999999999999999999999999999999887653221111 111111 12222222
Q ss_pred ---------------CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 232 ---------------DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 232 ---------------d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
+++.+++++++. ++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfG 278 (464)
T PRK06938 199 YRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFG 278 (464)
T ss_pred ccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 267788888743 2479999999999999999999999999999999999999999999999
Q ss_pred cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 293 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
|+|.+|+++++|+.|||+|+||+++||+|+|++++++++ +.+. ...|.+||++||++|++++++|+.++++++.++
T Consensus 279 RtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~---~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~ 354 (464)
T PRK06938 279 RTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQ---PGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEH 354 (464)
T ss_pred cCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999885 6554 346889999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC-cCchhhcccchHHHHHHHHHHHHCCeEeccCC--Ccce
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAG 449 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~ 449 (476)
+++++++|+++|+++..+++++.+++|.|+|++++|.++.. .++......+......+...|+++|+++.+.+ .+.+
T Consensus 355 ~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l 434 (464)
T PRK06938 355 AAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVV 434 (464)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEE
Confidence 99999999999999988899999999999999999975321 11111111123445678899999999998754 2344
Q ss_pred EE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 450 FT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 450 ~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++ ++++|++|+|+++++|++++.+++
T Consensus 435 ~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 435 RFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 43 899999999999999999998753
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=527.26 Aligned_cols=392 Identities=25% Similarity=0.306 Sum_probs=329.7
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHhhCC--C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP--S 154 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~----~~~~~~~~~la~~l~~~~~--~ 154 (476)
.|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.+|++++.+. +..++...+|+++|++.+| +
T Consensus 24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~ 103 (449)
T PRK07481 24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG 103 (449)
T ss_pred CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence 489999999999999999999999999999999999999999999999985432 4678999999999999984 5
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceee
Q 011856 155 IEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT 227 (476)
Q Consensus 155 ~e~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (476)
.++++|++||+||++.|+|+||.++ ++.+||.++++|||++.+++..++.......+ |..+++.....+..+.
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 183 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR 183 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence 6899999999999999999999985 67899999999999999998877654322111 2233443333334455
Q ss_pred ccCC--CHHHH--------HHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc
Q 011856 228 APFN--DVSAL--------ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (476)
Q Consensus 228 ~~~~--d~~~l--------e~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (476)
+|+| |.+.+ |+++. ++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|
T Consensus 184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG 263 (449)
T PRK07481 184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263 (449)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc
Confidence 5666 55443 44444 345789999999999999999999999999999999999999999999999 999
Q ss_pred ccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
.+|+++++|+.|||+|+||++++| +|+|++++++++++.+... +...|++||++||++|++++++|+.++++++.
T Consensus 264 ~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~ 343 (449)
T PRK07481 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLP 343 (449)
T ss_pred hhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999 5999999999999988632 23468899999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC-cCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
+++++++++|+++|+++..+++++.++++.|+|++++|..+.. .+. ..+.......+...|+++||++.+.+. .+
T Consensus 344 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~Gvl~~~~g~-~i 419 (449)
T PRK07481 344 ANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREP---IDPSKGYANAVADVARENGVLVRPSGT-KI 419 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCC---CCchhHHHHHHHHHHHhCCeEEEecCC-EE
Confidence 9999999999999999988889999999999999999964321 110 001123456788899999999988653 34
Q ss_pred EE--eCCCcHHHHHHHHHHHHHHHHHhhC
Q 011856 450 FT--SLAHSSDDIQHTITAAEKVKMRFLF 476 (476)
Q Consensus 450 ~~--~~~~t~e~i~~~~~~l~~~~~~~~~ 476 (476)
++ ++++|++|||+++++|+++++++.|
T Consensus 420 ~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 448 (449)
T PRK07481 420 ILSPPLVIQREDVDRIVDALDAGLSAVPF 448 (449)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44 5889999999999999999998765
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=526.04 Aligned_cols=391 Identities=26% Similarity=0.391 Sum_probs=321.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCCCC-
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSIE- 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~~~e- 156 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.. ..++++...+|+++|.+.+|+.+
T Consensus 40 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 119 (459)
T PRK06931 40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGK 119 (459)
T ss_pred CCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccc
Confidence 58999999999999999999999999999999999999999999999987432 23578889999999999997432
Q ss_pred --eE-EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC-
Q 011856 157 --MV-RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN- 231 (476)
Q Consensus 157 --~v-~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 231 (476)
++ +|+|||+||++.|+|+||.+++|.+||.++++|||++.+++..++.......+ |..+++......+.+.+|++
T Consensus 120 ~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK06931 120 EYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199 (459)
T ss_pred cceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 34 56699999999999999999999999999999999999999877653222111 22233322222334444444
Q ss_pred ----CHHHH----HHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch
Q 011856 232 ----DVSAL----ENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (476)
Q Consensus 232 ----d~~~l----e~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (476)
+.+.+ ++.+.+ .++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a 279 (459)
T PRK06931 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA 279 (459)
T ss_pred CchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH
Confidence 23333 344432 34579999999999999999999999999999999999999999999999 9999999
Q ss_pred hhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011856 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (476)
Q Consensus 300 ~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (476)
++++|+.|||+|+||++++|+|+|++++++++ +.+. +..+++||++||++|++++++|+.++++++.+++++++++
T Consensus 280 ~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~---~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~ 355 (459)
T PRK06931 280 FEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQ---PGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEW 355 (459)
T ss_pred hhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhcc---CCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999888774 6664 3568899999999999999999999989999999999999
Q ss_pred HHHHHHHHhhhcCCceEeeeeceeEEEEEecCC-CcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceE--EeCC
Q 011856 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLA 454 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~--~~~~ 454 (476)
|+++|+++..+++.+.+++|.|+|+++++.++. ..++......+......+...|+++|+++.+.+. +.++ ++++
T Consensus 356 l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~ 435 (459)
T PRK06931 356 LKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLL 435 (459)
T ss_pred HHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCC
Confidence 999999998889999999999999999997532 1111111112334556788999999999976542 3344 4899
Q ss_pred CcHHHHHHHHHHHHHHHHHhh
Q 011856 455 HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+|++|+|+++++|++++.+++
T Consensus 436 it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 436 ITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-66 Score=518.98 Aligned_cols=397 Identities=22% Similarity=0.306 Sum_probs=331.7
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
+++.+++++++++++.+.... .+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++
T Consensus 13 ~~s~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~ 84 (457)
T PRK05639 13 PKAKELIEREKRVLSPGIGVK--------LFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVAL 84 (457)
T ss_pred CCHHHHHHHHHHhhccccCcC--------CCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHh
Confidence 456778888888877664211 138999999999999999999999999999999999999999999999998
Q ss_pred cCC--CC-CCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 131 GTS--FG-APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 131 ~~~--~~-~~~~~~~~la~~l~~~~~~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
... .. .+++...+|+++|++..|. .++|+|+|||+||++.|+|+||.++++.+||.++++|||++.+++..++...
T Consensus 85 ~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~ 164 (457)
T PRK05639 85 IQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQS 164 (457)
T ss_pred ccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCc
Confidence 532 22 3467888999999999884 5899999999999999999999999999999999999999999988766421
Q ss_pred -ccCCC-CCCCCCCCCCCCceeeccCC-------------CH--------HHHHHHHhc---CCCCeEEEEEcccCCCCC
Q 011856 207 -ATLGL-PDSPGVPKGATYETLTAPFN-------------DV--------SALENLFEN---NKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 207 -~~~~~-~~~~~~~~~~~~~~~~~~~~-------------d~--------~~le~~l~~---~~~~~a~vi~ep~~~~~G 260 (476)
....+ |..+ ++..+|++ |. +.+++.+.. .++++++||+||+++++|
T Consensus 165 ~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG 236 (457)
T PRK05639 165 SQKRGFSPLMP--------NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAG 236 (457)
T ss_pred ccccCCCCCCC--------CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCC
Confidence 11111 1111 12333332 22 245555432 356899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~ 339 (476)
.+.|+++||++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|+||++++|+|+|++++++++++...
T Consensus 237 ~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~~~--- 313 (457)
T PRK05639 237 IVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTS--- 313 (457)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHhhcC---
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999998322
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhh
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
..+.+|+++||++|++++++|+.++++++.+++++++++|+++|+++..+++++.+++|.|+|+++++..+..
T Consensus 314 -~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~------ 386 (457)
T PRK05639 314 -GSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG------ 386 (457)
T ss_pred -CCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC------
Confidence 2355799999999999999999999899999999999999999999988899999999999999999964321
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++......+.+.|+++|+++.+.+. +.+++ ++.+|++|+|+++++|+++++++
T Consensus 387 -~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 387 -KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred -CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 13344557888999999999987642 44554 79999999999999999998765
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=518.85 Aligned_cols=368 Identities=27% Similarity=0.384 Sum_probs=320.9
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCC-CCeE
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPS-IEMV 158 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~~-~e~v 158 (476)
++++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.... ...++...+|+|+|++.+|+ .+++
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 137 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS 137 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence 44567777799999999999999999999999999999999999999985433 25688899999999999984 5899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc---CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHH
Q 011856 159 RFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVS 234 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~---~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~ 234 (476)
+|+|||+||++.|+|+||.++ ++.+||.++++|||++.+++..++.......+ |. ...+..+|++|.+
T Consensus 138 ~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~--------~~~~~~~p~~d~~ 209 (442)
T TIGR03372 138 FFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPL--------LPGFHHVAFGDIE 209 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCC--------CCCCEEeCCCCHH
Confidence 999999999999999999996 78899999999999999999887753221111 11 1236778999999
Q ss_pred HHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 235 ALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 235 ~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
.+++.+++ +++++++||+||+++++|.+.|+++||++|+++|++||+++|+||||+|| |+|.+|+++++|+.|||+
T Consensus 210 ~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv 289 (442)
T TIGR03372 210 AMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDIL 289 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCee
Confidence 99888853 45689999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011856 311 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 311 t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
|+||++++| +|+|++++++++++.+.. .+..+++||++||++|++++++|+.++++++.+++++++++++++|+++..
T Consensus 290 t~gK~lg~G~~Pigavv~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~ 368 (442)
T TIGR03372 290 CLAKALGGGVMPIGATIATEAVFSVLFD-NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAA 368 (442)
T ss_pred eehhhhcCCcccceEEEecHHHHHhhhc-cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 699999999999998842 245688999999999999999999999889999999999999999999988
Q ss_pred hcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHH
Q 011856 390 KAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTI 464 (476)
Q Consensus 390 ~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~ 464 (476)
+++ .+.+++|.|+|++++|.++ .....+.+.|+++||++.+.+. +.+++ ++.+|++|+|+++
T Consensus 369 ~~~~~i~~vRG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~ 435 (442)
T TIGR03372 369 EYPDLIIEARGKGLLMAIEFRDN-------------EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVI 435 (442)
T ss_pred hCCCceEEEecceEEEEEEeCCh-------------HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHH
Confidence 887 7789999999999999642 2336788999999999976532 34554 7999999999999
Q ss_pred HHHHHHH
Q 011856 465 TAAEKVK 471 (476)
Q Consensus 465 ~~l~~~~ 471 (476)
++|++++
T Consensus 436 ~~l~~~~ 442 (442)
T TIGR03372 436 KAAKDAL 442 (442)
T ss_pred HHHHHhC
Confidence 9999864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=520.02 Aligned_cols=416 Identities=23% Similarity=0.298 Sum_probs=336.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
+.++.++.+++++.+.... +.+. ...|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~ 89 (460)
T PRK06916 13 YEELSEKNKAYVWHPFTQM-KDYL--EEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIA 89 (460)
T ss_pred hHHHHHHHhhccccccccc-cccc--cCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCC
Confidence 4567777777765543321 1111 124899999999999999999999999999999999999999999999999843
Q ss_pred ---CCCCCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhc
Q 011856 133 ---SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 133 ---~~~~~~~~~~~la~~l~~~~~~-~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
..++.++...+|+++|++.+|. .++++|+|||+||++.|+|+||.+ +++.+||.++++|||++.+++..+
T Consensus 90 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s 169 (460)
T PRK06916 90 HSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVG 169 (460)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhcc
Confidence 2356788899999999999984 689999999999999999999984 678999999999999999999887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceeeccC---------CCHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHH
Q 011856 203 GSGVATLGL-PDSPGVPKGATYETLTAPF---------NDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 203 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~ 271 (476)
+.......+ |...++......+.+..+. ++++.+++.++++++++++||+|| +++++|.+.|+++||++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~ 249 (460)
T PRK06916 170 AIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKG 249 (460)
T ss_pred CCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHH
Confidence 753322111 1111110000011111111 136778888887778999999999 69999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccC
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAG 345 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~ 345 (476)
|+++|++||++||+|||+||| |+|.+|+++++|+.|||+|+||+++|| +|+|++++++++++.+... ....|.+
T Consensus 250 lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~ 329 (460)
T PRK06916 250 LRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGH 329 (460)
T ss_pred HHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCC
Confidence 999999999999999999999 999999999999999999999999999 5999999999999877531 2356888
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
||++||++|++++++|+.+++++++++++++++++++.|+++.. ++.+.++++.|+|++++|.++... ......+..
T Consensus 330 T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v~~vrG~Glm~giel~~~~~~--~~~~~~~~~ 406 (460)
T PRK06916 330 SYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKET--KEPFEWTER 406 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeecCCceeeEEeeccccc--ccCCCchhh
Confidence 99999999999999999999899999999999999999999854 788889999999999999754221 000011222
Q ss_pred HHHHHHHHHHHCCeEeccCCCcceE--EeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 426 KFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~~~~~~--~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
....+...|+++||++.+.+ ..++ +++++|++||++++++|+++++++.
T Consensus 407 ~~~~i~~~~~~~Gvl~~~~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 407 VGVQVCKRSRELGMLTRPLG-NTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred HHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 34678889999999998865 3443 3799999999999999999998753
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=517.49 Aligned_cols=384 Identities=22% Similarity=0.284 Sum_probs=322.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPS-IE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~~~~~~~~la~~l~~~~~~-~e 156 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++. ..+++++...+|+++|++..|. .+
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 115 (453)
T PRK06943 36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLG 115 (453)
T ss_pred CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3899999999999999999999999999999999999999999999999853 2356788999999999999874 58
Q ss_pred eEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeecc
Q 011856 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 229 (476)
+++|++||+||++.|+|+||.+ +++.+||.++++|||++.+++..++.......+ |...++.....++....+
T Consensus 116 ~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (453)
T PRK06943 116 HAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGAR 195 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccc
Confidence 9999999999999999999654 578899999999999999999888754322111 111111000000000001
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 230 ---------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
.+++++++++++++++++++||+|| +++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+|
T Consensus 196 ~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 196 PGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 1346888888887778999999999 59999999999999999999999999999999999999 999999
Q ss_pred hhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH
Q 011856 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (476)
+++++|+.|||+|+||+++|| +|+|++++++++++.+... ..+.|.+||++||++|++++++|++++++++.++++
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~ 355 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA 355 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999 5999999999999988532 134688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--e
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~ 452 (476)
+++++|+++|+++. +++.+.++++.|+|++++|..+. .+......++...++++||++.+.+. .+++ +
T Consensus 356 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~--------~~~~~~~~~i~~~~~~~Gll~~~~g~-~l~~~Pp 425 (453)
T PRK06943 356 RKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDG--------DAARTFSRRFFEAALERELLLRPIGT-TVYLMPP 425 (453)
T ss_pred HHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCC--------CcchHHHHHHHHHHHHCCcEEEecCC-EEEEeCC
Confidence 99999999999984 47777899999999999997431 01223356788999999999987653 4555 6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++|++|||+++++|+++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 426 YVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=516.82 Aligned_cols=390 Identities=24% Similarity=0.307 Sum_probs=320.6
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCCC----
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPS---- 154 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~~~~~~~~la~~l~~~~~~---- 154 (476)
|+.+.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.. ..++.++...+|+++|.+.+|.
T Consensus 47 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 126 (472)
T PRK08742 47 LVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGR 126 (472)
T ss_pred CeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccC
Confidence 578999999999999999999999999999999999999999999998642 2346788899999999999873
Q ss_pred --CCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCce
Q 011856 155 --IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYET 225 (476)
Q Consensus 155 --~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 225 (476)
.++|+|++||+||++.|+|+||.+ +++.+||.++++|||++.+++..++.......+ |...++......+.
T Consensus 127 ~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~ 206 (472)
T PRK08742 127 APLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDA 206 (472)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCc
Confidence 579999999999999999999988 568899999999999999999887654322111 11111110001111
Q ss_pred eeccCC---------CHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011856 226 LTAPFN---------DVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (476)
Q Consensus 226 ~~~~~~---------d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (476)
+..++. +++.+++.++++++++++||+|| +++++|.+.|+++||++|+++|++||++||+|||+||| |+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRt 286 (472)
T PRK08742 207 YLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRT 286 (472)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 111111 35778888876667899999999 69999999999999999999999999999999999999 99
Q ss_pred cccchhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC---CCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 295 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|.+|+++++|+.|||+|+||+++||+ |+|++++++++++.+... +.+.|++||++||++|++++++|++++++++.
T Consensus 287 G~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~ 366 (472)
T PRK08742 287 GTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVI 366 (472)
T ss_pred ccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHH
Confidence 99999999999999999999999995 999999999999987531 23568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceE
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 450 (476)
+++++++++|++.++.+ .+++.+.++++.|+|++++|..+.... ....++......+.+.++++||++.+.+ +.++
T Consensus 367 ~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~ 442 (472)
T PRK08742 367 ARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKR--TPFPPAARVGLHAYRAALARGVVLRPLG-DVLY 442 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCcccc--ccCCchhHHHHHHHHHHHHCCeEEEecC-CEEE
Confidence 99999999999777765 568889999999999999997532110 0000112234667888999999998865 4555
Q ss_pred E--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 451 T--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 451 ~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+ ++++|++|||+++++|++++++++
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 799999999999999999998754
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=517.52 Aligned_cols=387 Identities=20% Similarity=0.296 Sum_probs=324.0
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++. ..++.++...+|+++|++..| +.++
T Consensus 30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 109 (466)
T PRK07030 30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR 109 (466)
T ss_pred CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 578999999999999999999999999999999999999999999999853 235678999999999999987 6789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceee---
Q 011856 158 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT--- 227 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--- 227 (476)
|+|++||+||++.|+|+||.+ +++.+||.+.++|||++.+++..++.......+ |...++......+.+.
T Consensus 110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 189 (466)
T PRK07030 110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE 189 (466)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence 999999999999999999876 578899999999999999999887653322111 1111111000011111
Q ss_pred ------ccCCCHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch
Q 011856 228 ------APFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (476)
Q Consensus 228 ------~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (476)
.+.++++++++.+.++++++++||+|| +++++|.+.++++|+++|+++|++||++||+|||+||| |+|.+|+
T Consensus 190 ~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a 269 (466)
T PRK07030 190 GMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFA 269 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchH
Confidence 112346778899987778999999999 79999999999999999999999999999999999999 9999999
Q ss_pred hhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH
Q 011856 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (476)
Q Consensus 300 ~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (476)
++++|+.||++|++|+++|| +|+|++++++++++.+... +...|++||++||++|++++++|++++++++.++++
T Consensus 270 ~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~ 349 (466)
T PRK07030 270 CEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNR 349 (466)
T ss_pred HHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999 5999999999999987521 235688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc--CchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
+++++|+++|+++. +++.+.++++.|+|+++++.+++.. ++. .+......+.+.|+++|+++.+.+ ..+++
T Consensus 350 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~----~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~ 423 (466)
T PRK07030 350 ALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKTPYP----WQERRGLKVYQHALERGALLRPLG-SVVYFL 423 (466)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccccCc----chhHHHHHHHHHHHHCCeEEEecC-CEEEEE
Confidence 99999999999984 6888899999999999999754321 110 112234578889999999998864 34443
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++|++||++++++|+++++++
T Consensus 424 Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 424 PPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999876
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=515.27 Aligned_cols=387 Identities=24% Similarity=0.306 Sum_probs=323.2
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~-~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++. +. .+.++...+|+++|++..| +.+
T Consensus 12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 91 (443)
T PRK07483 12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLE 91 (443)
T ss_pred CCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999853 22 2568888999999999987 578
Q ss_pred eEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec-
Q 011856 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA- 228 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~- 228 (476)
+++|++||+||++.|+|+||.+ +++.+||.++++|||++.+++..++.......+ |...++ ..+..
T Consensus 92 ~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~------~~~~~~ 165 (443)
T PRK07483 92 HVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEA------HHVSPC 165 (443)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCC------EEeCCC
Confidence 9999999999999999999998 678899999999999999999887753322111 111111 01111
Q ss_pred -cCCC--------------HHHHHHHHh-cCCCCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 229 -PFND--------------VSALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 229 -~~~d--------------~~~le~~l~-~~~~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
+|++ ++++++++. .+++++++||+||+++ ++|.+.|+++||++|+++|++||++||+|||+||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 245 (443)
T PRK07483 166 YAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCG 245 (443)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeC
Confidence 1232 256777664 3456899999999998 5899999999999999999999999999999999
Q ss_pred c-cccccchhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
| |+|.+|+++++|+.|||+|+||++++|+ |+|++++++++++.+... ....|++||++||++|++++++|+.+++++
T Consensus 246 fGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~ 325 (443)
T PRK07483 246 MGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDG 325 (443)
T ss_pred cccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9 9999999999999999999999999996 999999999999988642 124588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--- 445 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--- 445 (476)
+.+++++++++|+++|+++..+++.+.+++|.|+|+++++.++..... ...++......+.+.++++|+++.+.+
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~ 403 (443)
T PRK07483 326 LLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKA--PFDPALKLHARIKREAMARGLMVYPMGGTI 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccC--CCCchhhHHHHHHHHHHHCCcEEEecCccc
Confidence 999999999999999999888899999999999999999975321100 000122345678899999999997653
Q ss_pred ----CcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 446 ----FEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 446 ----~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+.+++ ++++|++|||+++++|++++.+++
T Consensus 404 ~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 404 DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 134554 799999999999999999998753
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=513.17 Aligned_cols=386 Identities=24% Similarity=0.345 Sum_probs=322.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCCCC--
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPSI-- 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~~~~~-- 155 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++... .+.++...+|+++|++.+|+.
T Consensus 24 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 103 (445)
T PRK08593 24 YPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFE 103 (445)
T ss_pred CCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 389999999999999999999999999999999999999999999999986433 246888999999999999843
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCceeec--cCC
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTA--PFN 231 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~ 231 (476)
++|+|++||+||++.|+|+||.++++.+||.++++|||++.+++..++... ....+ |..+++.....++.... ..+
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 799999999999999999999999999999999999999999988876421 11111 11112100000001110 011
Q ss_pred C-------HHHHHHHHhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhh
Q 011856 232 D-------VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 301 (476)
Q Consensus 232 d-------~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~ 301 (476)
+ ++++++.++++ ++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~ 263 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSIS 263 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHH
Confidence 1 24556656432 4689999999999999999999999999999999999999999999999 999988999
Q ss_pred ccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 302 ~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
++|+.||++|+||++++|+|+|++++++++++.+.. ..+..|+++||++|++++++|+.++++++.+++++++++|+
T Consensus 264 ~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 340 (445)
T PRK08593 264 HFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEA---PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYAR 340 (445)
T ss_pred hcCCCCCEeeecccccCCcccEEEEEcHHHHhhhcc---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998862 24667999999999999999999988899999999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~ 459 (476)
++|+++..+++++.+++|.|+|+++++..+... ..++......+...|+++||++.+.+.+.+++ ++.+|++|
T Consensus 341 ~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~-----~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~ 415 (445)
T PRK08593 341 KRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKL-----KTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQ 415 (445)
T ss_pred HHHHHHHhcCCcEEEEeccceEEEEEEecCCCc-----CCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHH
Confidence 999999888999999999999999999753221 12344556788999999999997755455554 79999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
||+++++|+++++++
T Consensus 416 id~~~~~l~~~l~~~ 430 (445)
T PRK08593 416 LDTALNTIEQAFTAL 430 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=513.59 Aligned_cols=406 Identities=29% Similarity=0.413 Sum_probs=338.6
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
..+++++++++.+++++.+.. ..+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+
T Consensus 13 ~~~~s~~l~~~~~~~~~~~~~---------~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql 83 (441)
T PRK05769 13 PGPKAREIIERDEKYLAQSTR---------RWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQA 83 (441)
T ss_pred CCccHHHHHHHHHHhhCcccc---------cCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHH
Confidence 345677788887777765421 12489999999999999999999999999999999999999999999999
Q ss_pred HhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC
Q 011856 129 KKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 129 ~~~~~~---~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
+++.+. .+.++...+|+++|++..| ..++|+|+|||+||++.|+|+||.++++.+||.++++|||++.+++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~ 163 (441)
T PRK05769 84 EKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTA 163 (441)
T ss_pred HhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcC
Confidence 986433 3457889999999999997 36899999999999999999999999999999999999999999988765
Q ss_pred CCC-ccCCC-CCCCCCCCCCCCceeeccCC--C--------HHHHHH-HHhc--CCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 204 SGV-ATLGL-PDSPGVPKGATYETLTAPFN--D--------VSALEN-LFEN--NKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 204 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--d--------~~~le~-~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
... ....+ |..+++......+.+.+|++ | ++.+++ ++++ +++++++||+||+++++|.+.|+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~ 243 (441)
T PRK05769 164 SKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNF 243 (441)
T ss_pred CCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHH
Confidence 422 11111 22333333223334444544 1 344666 4432 35689999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCC
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~ 347 (476)
|++|+++|++||+++|+||||+|| |+|.+++++++|+.||++||||++++|+|+|++++++++++.+. ..+.+||
T Consensus 244 l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~~----~~~~~T~ 319 (441)
T PRK05769 244 FKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLPP----GSHANTF 319 (441)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcCC----CCCCCCC
Confidence 999999999999999999999999 99998899999999999999999999999999999999986432 3578899
Q ss_pred CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHH
Q 011856 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427 (476)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 427 (476)
++||++|++++++|+.+++ ++.+++++++++|+++|+++..+++.+.++++.|+|++++|.+++ ..++....
T Consensus 320 ~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~-------~~~~~~~~ 391 (441)
T PRK05769 320 GGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR-------KEPDPKLR 391 (441)
T ss_pred CcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC-------ccccHHHH
Confidence 9999999999999999988 999999999999999999998888988999999999999996532 11234455
Q ss_pred HHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 428 ARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 428 ~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..+.+.|+++||++.+.+.+.+++ ++.+|++|||+++++|++++.+++
T Consensus 392 ~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~ 441 (441)
T PRK05769 392 DKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKELL 441 (441)
T ss_pred HHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 778899999999998876555655 688899999999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-65 Score=516.27 Aligned_cols=390 Identities=24% Similarity=0.309 Sum_probs=319.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHhhCC--C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP--S 154 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~----~~~~~~~~~la~~l~~~~~--~ 154 (476)
+|+++++++|+|+||+|||+||||.++++++++||+||+|++|+.+|++++..+ +.+++...+|+++|.+.++ +
T Consensus 71 ~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~ 150 (504)
T PLN02760 71 EPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK 150 (504)
T ss_pred CCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC
Confidence 589999999999999999999999999999999999999999999999985422 4578889999999999864 4
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceee
Q 011856 155 IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT 227 (476)
Q Consensus 155 ~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (476)
.++++|+|||+||++.|+|+||.+ +++.+||.++++|||++...+..++.......+ +...++.....+..+.
T Consensus 151 ~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~ 230 (504)
T PLN02760 151 MGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWR 230 (504)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccc
Confidence 578999999999999999999866 357899999999999998888777653321111 0011111111111111
Q ss_pred --ccCCC--------HHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc
Q 011856 228 --APFND--------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (476)
Q Consensus 228 --~~~~d--------~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (476)
+|..+ .++|++++. ++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG 310 (504)
T PLN02760 231 FHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG 310 (504)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc
Confidence 11111 245777774 345689999999999999999999999999999999999999999999999 999
Q ss_pred ccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
.+|+++++|+.|||+||||++++| +|+|++++++++++.+... +...|++||++||++|++++++|+.++++++.
T Consensus 311 ~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~ 390 (504)
T PLN02760 311 TMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIP 390 (504)
T ss_pred hhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999998 5999999999999988632 23468899999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceE
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 450 (476)
+++++++++|+++|+++ .+++++.+++|.|+|+++++.++.... ....++......+.+.|+++||++.+.+ ..++
T Consensus 391 ~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lr 466 (504)
T PLN02760 391 EHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPN--DPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIM 466 (504)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCccc--ccccchhHHHHHHHHHHHhCCcEEEecC-CEEE
Confidence 99999999999999998 668889999999999999997543110 0001122345678899999999998765 3455
Q ss_pred E--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 451 T--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ ++++|++|||+++++|++++.++
T Consensus 467 l~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 467 MSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5 58899999999999999998765
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=513.26 Aligned_cols=391 Identities=24% Similarity=0.346 Sum_probs=318.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCCC--
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSI-- 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~~~-- 155 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.. ..++++...+|+++|++.+|+.
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 100 (442)
T TIGR00709 21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM 100 (442)
T ss_pred CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence 48999999999999999999999999999999999999999999999998532 2357889999999999999742
Q ss_pred -Ce-EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC-
Q 011856 156 -EM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN- 231 (476)
Q Consensus 156 -e~-v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 231 (476)
.+ ++|+|||+||++.|+|+||.+++|.+||.++++|||++..++..++.......+ +...++......+.+..+++
T Consensus 101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (442)
T TIGR00709 101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI 180 (442)
T ss_pred CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence 34 555699999999999999999999999999999999999999887642211111 11122211112223333333
Q ss_pred ----CH----HHHHHHHh---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch
Q 011856 232 ----DV----SALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (476)
Q Consensus 232 ----d~----~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (476)
+. +.+++.+. ...+++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| |+|.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a 260 (442)
T TIGR00709 181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA 260 (442)
T ss_pred CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH
Confidence 12 22444443 234579999999999999999999999999999999999999999999999 9999999
Q ss_pred hhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011856 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (476)
Q Consensus 300 ~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (476)
++++|+.||++|+||++++|+|+|+++++++ ++.+. ...+.+||++||++|++++++|+.++++++.+++++++++
T Consensus 261 ~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~---~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~ 336 (442)
T TIGR00709 261 FEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQ---PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGER 336 (442)
T ss_pred HHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccC---CCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999988 45554 3457789999999999999999999889999999999999
Q ss_pred HHHHHHHHhhhcCCceEeeeeceeEEEEEecCC-CcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceE--EeCC
Q 011856 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSLA 454 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~--~~~~ 454 (476)
|+++|+++..+++.+.+++|.|+|++++|.++. ..++.....++......+...|+++||++.+.+ .+.++ ++++
T Consensus 337 l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~ 416 (442)
T TIGR00709 337 ITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPIT 416 (442)
T ss_pred HHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCC
Confidence 999999998889999999999999999997532 111111111233456778889999999997654 23344 5899
Q ss_pred CcHHHHHHHHHHHHHHHHHhh
Q 011856 455 HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+|++|+++++++|++++.+++
T Consensus 417 it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 417 IDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998763
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=509.20 Aligned_cols=419 Identities=21% Similarity=0.279 Sum_probs=337.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.+|.++.++.+++++.++.+. ..+.. ..|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~ 83 (460)
T PRK06541 7 NSDTDLQALAKRHLWMHFTRH-GAYID--APVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGT 83 (460)
T ss_pred ccHHHHHHHhhcccccCccCc-ccccc--CCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh
Confidence 456777777778777655432 11111 137889999999999999999999999999999999999999999999998
Q ss_pred cC---CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc---c---CCceEEEEeCCCCCCchhHHh
Q 011856 131 GT---SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 131 ~~---~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~~ 200 (476)
.. .+.+.++...+|+++|++..| +.++|+|++||+||++.|+|+||.+ + ++.+||.++++|||++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s 163 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALA 163 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhc
Confidence 53 335678889999999999987 4789999999999999999999988 3 478999999999999999998
Q ss_pred hcCCCCccCCC-CCCCCCCCCCCCceeecc-C-CC--------HHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 201 KAGSGVATLGL-PDSPGVPKGATYETLTAP-F-ND--------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 201 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~d--------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
.++.......+ |...++......+.+..| + ++ ++.+++++++ +++++++||+||+++++|.+.++++|
T Consensus 164 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~y 243 (460)
T PRK06541 164 ITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGY 243 (460)
T ss_pred CcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHH
Confidence 87654322111 222233222222333333 3 22 3678888864 34689999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC-CCccccC
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAG 345 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~-~~~~~~~ 345 (476)
|++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|+||++++|+ |+|++++++++++.+... ....+.+
T Consensus 244 l~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~ 323 (460)
T PRK06541 244 FERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGY 323 (460)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCC
Confidence 999999999999999999999999 9999999999999999999999999997 999999999999887643 2345778
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc--Cchhhcccc
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKSE 423 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~--~~~~~~~~~ 423 (476)
|+++||+++++++++|+.++++++.+++++++++|+++|+++.. ++++.++++.|+|++++|.+++.. ++... ..+
T Consensus 324 T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~-~~~ 401 (460)
T PRK06541 324 TFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDD-ESE 401 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcch-hhh
Confidence 99999999999999999998889999999999999999999865 788889999999999999753211 11000 001
Q ss_pred hHHHHHHHHHHHHCCeEeccC--CCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 424 TTKFARFYRGMLEEGVYFAPS--QFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~--~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
......+...|+++||++.+. +.+.+++ ++.+|++|||+++++|++++.++
T Consensus 402 ~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 402 RLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred hhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112236778999999999874 3345555 67899999999999999999764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=503.65 Aligned_cols=377 Identities=28% Similarity=0.386 Sum_probs=323.1
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCCC--CC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--IE 156 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~~~~--~e 156 (476)
|+++.+++|+|+||+|||+||||.+++++.++||+||+|.+|+++|+++.... .++++...+|+++|++.+|+ .+
T Consensus 23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (425)
T PRK07495 23 QIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAK 102 (425)
T ss_pred CeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 89999999999999999999999999999999999999999999999985432 45788889999999999984 37
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCC---
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFND--- 232 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 232 (476)
+++|+|||+||++.|+|+||.++++.+||.++++|||++..++..++.. .... ++... ..++..+|+++
T Consensus 103 ~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~ 175 (425)
T PRK07495 103 KTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKV------GFGAM-MPDVYHVPFPVELH 175 (425)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCccccc------CCCCC-CCCeEEecCCcccc
Confidence 9999999999999999999999999999999999999998888776642 1111 11100 12344555543
Q ss_pred -------HHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc
Q 011856 233 -------VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (476)
Q Consensus 233 -------~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (476)
++++++.+++ .++++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+|| |+|.++++++
T Consensus 176 g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~ 255 (425)
T PRK07495 176 GVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEH 255 (425)
T ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecc
Confidence 5667887763 34679999999999999989999999999999999999999999999999 9998888999
Q ss_pred cCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 303 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 303 ~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
+|+.||++||||++++|+|+|++++++++++.+.. ..+.+||++||++|++++++|+.++++++.++++++++++++
T Consensus 256 ~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 332 (425)
T PRK07495 256 HEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGP---GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332 (425)
T ss_pred cCCCCCEEeehhhhcCCccceEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 347789999999999999999999888999999999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSD 458 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e 458 (476)
+|+++..+++.+.++++.|+|++++|.++.. ..++......+.+.|+++|+++.+.+. +.+++ ++++|++
T Consensus 333 ~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~------~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~ 406 (425)
T PRK07495 333 RLASLRETVPEIADIRGPGFMNAVEFNDADS------GLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDD 406 (425)
T ss_pred HHHHHHhhCCCeeeeecCceEEEEEEecCCC------CCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHH
Confidence 9999988888889999999999999965321 123444567788999999999976542 44544 7999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011856 459 DIQHTITAAEKVKMRF 474 (476)
Q Consensus 459 ~i~~~~~~l~~~~~~~ 474 (476)
++|+++++|+++++++
T Consensus 407 ~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 407 VFAEALDILEASILEA 422 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=508.72 Aligned_cols=392 Identities=22% Similarity=0.284 Sum_probs=323.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS-IE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~~~~-~e 156 (476)
+| ++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++... .+.++...+|+++|++.+|+ .+
T Consensus 14 ~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 92 (447)
T PRK06917 14 YP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLN 92 (447)
T ss_pred CC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 36 589999999999999999999999999999999999999999999985322 35688899999999999984 58
Q ss_pred eEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceee--
Q 011856 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT-- 227 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-- 227 (476)
+++|++||+||++.|+|+||.+ ++|.+||.++++|||++++++..++.......+ |...+++.........
T Consensus 93 ~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 172 (447)
T PRK06917 93 WSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCP 172 (447)
T ss_pred EEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccc
Confidence 9999999999999999999765 678999999999999999999877643221111 1111111000011111
Q ss_pred -------ccCCCHHHHHHHHhcCC-CCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 228 -------APFNDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 228 -------~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
+.+++++.+++++++++ +++++||+||++++ +|.+.|+++|+++|+++|++||++||+|||++|| |+|.+
T Consensus 173 ~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~ 252 (447)
T PRK06917 173 VQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAM 252 (447)
T ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccch
Confidence 12235678888887653 57999999999985 7799999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (476)
|+++++++.||++|+||++++|+ |+|++++++++++.+... +...+++||++||++|++++++|+.++++++.+++++
T Consensus 253 ~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~ 332 (447)
T PRK06917 253 FAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAE 332 (447)
T ss_pred hhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999999999996 999999999999988643 2345778999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------Ccc
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEA 448 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~ 448 (476)
++++|++.|+++..+++.+.++++.|+|++++|.+++.. .+...++......+.+.|+++||++.+.+ .+.
T Consensus 333 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~ 410 (447)
T PRK06917 333 KGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKT--KQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDA 410 (447)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCc--CCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCE
Confidence 999999999999888999999999999999999754321 00011123456788899999999998753 234
Q ss_pred eEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 449 GFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 449 ~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+++ ++++|++|||+++++|+++++++.
T Consensus 411 i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 411 VIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 444 688999999999999999998763
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=507.80 Aligned_cols=390 Identities=22% Similarity=0.278 Sum_probs=317.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~----~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.. +++.++...+|+++|++.+| +.
T Consensus 32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 111 (456)
T PRK07480 32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF 111 (456)
T ss_pred CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc
Confidence 37899999999999999999999999999999999999999999999998532 24678999999999999998 47
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceee-
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT- 227 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~- 227 (476)
++++|++||+||++.|+|+||.+ +++.+||.++++|||++...+..++........ +..+++.....+..+.
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGE 191 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccc
Confidence 89999999999999999999998 567889999999999998888777653221111 0011111100000111
Q ss_pred ------ccCCC--HHHHHHHH-hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 228 ------APFND--VSALENLF-ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 228 ------~~~~d--~~~le~~l-~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
.++++ ++.|++.+ +..++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 192 GGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 11122 36676555 4455689999999999999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhc-CCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHH-H
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVA-PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL-N 374 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~-~ 374 (476)
|+++++|+.||++||||+++||+ |+|++++++++++.+. ..+...|++||++||++|++++++|+.++++++.+++ +
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 351 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRD 351 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999995 9999999999999883 2234568899999999999999999999989999999 6
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--e
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~ 452 (476)
+++++|+++|+++ .+++++.+++|.|+|++++|.++.... .... ........+...|+++||++.+.+ +.+++ +
T Consensus 352 ~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~Gll~~~~~-~~l~~~Pp 427 (456)
T PRK07480 352 DTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATR-ERFE-AGGGVGTICRDHCFANGLIMRAVG-DRMIISPP 427 (456)
T ss_pred HHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEecccccc-ccCc-chhhHHHHHHHHHHHCCcEEeecC-CEEEEECC
Confidence 9999999999995 568889999999999999997542210 0000 001223567788999999998754 34444 6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+|++|||+++++|++++.++
T Consensus 428 l~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 428 LVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999875
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=508.82 Aligned_cols=390 Identities=21% Similarity=0.286 Sum_probs=318.5
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCC-CCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG-APCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~-~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++++|+|+||+|||+||||.+++++.++||+||+|.+|+.+|+++.. .++ .+++...+|+++|.+..| +.
T Consensus 33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 112 (466)
T PRK07036 33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL 112 (466)
T ss_pred CCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 4899999999999999999999999999999999999999999999999852 233 678899999999999998 47
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
++|+|+|||+||++.|+|+||.+ +++.+||.++++|||++..++..++.......+ +...++.....++.+..
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 89999999999999999999988 457899999999999998888776653222111 10111100000111111
Q ss_pred cCC---------CHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 229 PFN---------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 229 ~~~---------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
+.+ .++.+++.+.. +++++++||+||+++++|.+.|+++|+++|+++|++||+++|+|||+||| |+|.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 272 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHF 272 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchh
Confidence 111 13456666653 45789999999999999999999999999999999999999999999999 99988
Q ss_pred chhh-ccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---C-CccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 298 GAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---G-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 298 ~~~~-~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
|+.+ ++|+.|||+|+||++++| +|+|++++++++++.+... . .+.+++||++||++|++++++|+.++++++.+
T Consensus 273 ~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~ 352 (466)
T PRK07036 273 FASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCE 352 (466)
T ss_pred hhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 8887 799999999999999999 5999999999999988632 1 24577899999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 451 (476)
++++++++|+++|+++ .+++.+.++++.|+|++++|.++.... +....+......+...|+++||++.+.+ +.+++
T Consensus 353 ~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l 428 (466)
T PRK07036 353 HVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSK--ALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVL 428 (466)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCcccc--CCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEE
Confidence 9999999999999876 568899999999999999997543211 0011223455678889999999998765 34444
Q ss_pred --eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 --SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++|++|||+++++|+++++++
T Consensus 429 ~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 429 SPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998765
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=502.88 Aligned_cols=394 Identities=28% Similarity=0.442 Sum_probs=333.6
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
+.+++++.+++++.++.+. +|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~ 73 (421)
T PRK06777 3 NSELNQRRLEATPRGVGVM---------CDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT 73 (421)
T ss_pred hHHHHHHHHHhcccccCcC---------CCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc
Confidence 4567778788888776532 3899999999999999999999999999999999999999999999999865
Q ss_pred CCC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-
Q 011856 133 SFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (476)
Q Consensus 133 ~~~---~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (476)
+.. .+++...+|+++|++..| +.++++|++||+||++.|+|+||.++++.+|+.++++|||++.+++..++...
T Consensus 74 ~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~ 153 (421)
T PRK06777 74 HTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAP 153 (421)
T ss_pred cccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcc
Confidence 332 367888999999999987 36899999999999999999999999999999999999999999998776421
Q ss_pred ccCCC-CCCCCCCCCCCCceeeccCC----------CHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 011856 207 ATLGL-PDSPGVPKGATYETLTAPFN----------DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (476)
Q Consensus 207 ~~~~~-~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (476)
....+ |.. ..+..++++ +++.+++.+++ +++++++||+||+++++|...++++|+++|+
T Consensus 154 ~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~ 225 (421)
T PRK06777 154 YKVGFGPFP--------GSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALR 225 (421)
T ss_pred cccCCCCCC--------CCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHH
Confidence 11111 111 112333332 36778888864 4568999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHH
Q 011856 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (476)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~ 352 (476)
++|++||++||+||||+|| |+|.+++++++++.||++|+||++++|+|+||+++++++++.+.+ ..+.+|+++||+
T Consensus 226 ~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~p~ 302 (421)
T PRK06777 226 TLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAP---GGLGGTYAGNPL 302 (421)
T ss_pred HHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCC---CCCCCCCCcCHH
Confidence 9999999999999999999 999888889999999999999999999999999999999998863 346789999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
+|++++++|+.++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..+.. ..++......+..
T Consensus 303 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~~~~~l~~ 376 (421)
T PRK06777 303 AVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQT------GKPSPEFTRQYQR 376 (421)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCcc------CCccHHHHHHHHH
Confidence 9999999999998899999999999999999999988888899999999999999864211 1123345567788
Q ss_pred HHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 433 GMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 433 ~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.|+++||++.+++. +.+++ +++++++++++++++|++++.
T Consensus 377 ~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 377 QALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred HHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 88999999988652 35665 578999999999999998874
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=505.65 Aligned_cols=383 Identities=22% Similarity=0.292 Sum_probs=319.8
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCC-CCeE
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPS-IEMV 158 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~~-~e~v 158 (476)
|+++++++|+|+||.|||+||||.++ ++.++||+||+|++|+.+|+++.... .+.++...+|+++|++.+|+ .+++
T Consensus 55 ~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 133 (459)
T PRK06082 55 LDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRV 133 (459)
T ss_pred CceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEE
Confidence 78999999999999999999999854 77899999999999999999985322 35788999999999999984 5899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCC-----
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND----- 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d----- 232 (476)
+|++||+||++.|+|+||.++++.+||.+.++|||++..++..++.......+ |..+++........+..|+++
T Consensus 134 ~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (459)
T PRK06082 134 LFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSD 213 (459)
T ss_pred EECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHH
Confidence 99999999999999999999999999999999999999888877653332111 222222222222233344544
Q ss_pred ---HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc
Q 011856 233 ---VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (476)
Q Consensus 233 ---~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD 308 (476)
++.+++++++. +++++||+||++++ |.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+.||
T Consensus 214 ~~~~~~l~~~i~~~-~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD 291 (459)
T PRK06082 214 VHYADYLEYVIEKE-GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291 (459)
T ss_pred HHHHHHHHHHHhcC-CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC
Confidence 35688888753 47999999999988 477889999999999999999999999999999 9999999999999999
Q ss_pred hhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011856 309 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 309 i~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (476)
++|+||++++| +|+|++++++++++.+.. ...+ +||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus 292 iv~~gKgl~gG~~P~~av~~~~~i~~~~~~--~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 292 ILCIGKGLGGGLVPIAAMITKDKYNTAAQI--SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEM 368 (459)
T ss_pred EEEecccccCCCCcceEEEEcHHHHhhccC--CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 599999999998765431 2334 7999999999999999999988899999999999999999999
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 465 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~ 465 (476)
..+++.+.+++|.|+|++++|..+... ..++......+...|+++||++.+.+.+.+++ ++++|++|||++++
T Consensus 369 ~~~~~~i~~vrG~Gl~~~ve~~~~~~~-----~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~ 443 (459)
T PRK06082 369 KAKYPLIGDVRGIGLLWGVELVTDRHT-----KERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALA 443 (459)
T ss_pred HhhCCCeeeeeeccceeEEEEccCccc-----cCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHH
Confidence 888999999999999999999753211 11233445678889999999998765455555 58899999999999
Q ss_pred HHHHHHHHhh
Q 011856 466 AAEKVKMRFL 475 (476)
Q Consensus 466 ~l~~~~~~~~ 475 (476)
++++++.++.
T Consensus 444 ~l~~~l~~~~ 453 (459)
T PRK06082 444 ILEEAIAKIC 453 (459)
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=460.57 Aligned_cols=392 Identities=26% Similarity=0.337 Sum_probs=334.9
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+..|++++++..++-.+.. .+.|+++.+++|+++||.+|++|+||.+++++.+.||+||.|.+++.+|.+
T Consensus 20 ~~aS~~~~~~E~k~~ahny----------hpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~ 89 (427)
T KOG1402|consen 20 TTASQQIMERENKYGAHNY----------HPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQAD 89 (427)
T ss_pred ccchhhhhchhhhcccccC----------CcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHh
Confidence 4445566666666543322 234999999999999999999999999999999999999999999999999
Q ss_pred hcCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc--------CCceEEEEeCCCCCCchhHH
Q 011856 130 KGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~--~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~ 199 (476)
+.+. ..+.+...-++++.+.+++ +.++|+-.|+|.||++.|+++||.+. .+.+|+...++|||.+.+++
T Consensus 90 kLtlssrafYnd~~~~f~~~vt~lf-~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ai 168 (427)
T KOG1402|consen 90 KLTLSSRAFYNDVLGEFAEYVTKLF-GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAI 168 (427)
T ss_pred HhhhhhHHHhhhhHHHHHHHHHHhc-CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeE
Confidence 8543 2346777789999999999 78999999999999999999999541 34456777999999999998
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
+++...-.. .++.......+..+||+|.++|+.+|+. +.++++++||+|++.|++.|+++||+++++||++|
T Consensus 169 s~s~d~ds~------~~fgp~~P~~~~~v~Y~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky 240 (427)
T KOG1402|consen 169 SLSTDPDSW------DGFGPFLPGVVDKVPYGDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY 240 (427)
T ss_pred EecCCcchh------hccCCCCCCcceeeccCCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhh
Confidence 887764211 1111112223678899999999999986 58999999999999999999999999999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
++++|.||+|||+ |+|+++++++-++.||++.|+|+++|| +|++++++++++|-.+. +..|++||++||++|+++
T Consensus 241 nvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~---pgeHgsTyggNpLg~~va 317 (427)
T KOG1402|consen 241 NVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIK---PGEHGSTYGGNPLGCAVA 317 (427)
T ss_pred cEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccC---CCccccccCCChHHHHHH
Confidence 9999999999999 999999999999999999999999999 69999999999998877 567999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
+|+|+++.++++.++.++++..|+.+|+++..+.+ ++.+|||+|++.++++...+. ....+..++-.|.+
T Consensus 318 iAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~---------~~~~aw~~cl~lk~ 388 (427)
T KOG1402|consen 318 IAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT---------SGQDAWDVCLALKE 388 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc---------cchhHHHHHHcccc
Confidence 99999999999999999999999999999988775 567899999999999964321 22344667788889
Q ss_pred CCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 437 EGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 437 ~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+|++..|...+.+|+ ++.++++|+++.++++++.+.
T Consensus 389 ~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 389 NGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred cccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 999999887666776 799999999999999998764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=505.63 Aligned_cols=390 Identities=20% Similarity=0.237 Sum_probs=318.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CC-CCCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SF-GAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~-~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++. .+ .+.++...+|+++|++.+| +.
T Consensus 30 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 109 (460)
T PRK06105 30 GPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM 109 (460)
T ss_pred CCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999999999999999999999999853 22 2568888999999999998 46
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
++|+|++||+||+++|+|+||.+ +++.+||.++++|||++..++..++.......+ +...++.....++...+
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~ 189 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRF 189 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccc
Confidence 89999999999999999999866 468899999999999998887766643221111 11111110000011111
Q ss_pred cC----------CCHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc
Q 011856 229 PF----------NDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296 (476)
Q Consensus 229 ~~----------~d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~ 296 (476)
+. ..++++|+++.. +++++++||+||+++++|.+.++++||++|+++|++||++||+||||||| |+|.
T Consensus 190 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 190 GLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 00 024677888753 34689999999999999999999999999999999999999999999999 9999
Q ss_pred cchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 297 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 297 ~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
+|+++++|+.|||+|+||++++| +|+|++++++++++.+... +...|.+||++||++|++++++|+.++++++.+
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999998 6999999999999987632 123478899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 451 (476)
++++++++|+++|+++ .+++.+.++++.|+|++++|..+.... ... .+.......+...++++||++.+.+ +.+++
T Consensus 350 ~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~-~~~-~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i~l 425 (460)
T PRK06105 350 NAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATK-TPF-EPPGKVGARANAAAHEHGVISRAMG-DTLAF 425 (460)
T ss_pred HHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccC-CCC-CchhHHHHHHHHHHHHCCeEEEecC-CEEEE
Confidence 9999999999999998 778999999999999999996432110 000 0112234678889999999998864 34554
Q ss_pred --eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 --SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++|++|||+++++|+++++++
T Consensus 426 ~Ppl~it~~eid~~~~~l~~~l~~~ 450 (460)
T PRK06105 426 CPPLIITAAQVDEMVDRFGRALDDV 450 (460)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999875
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=505.78 Aligned_cols=410 Identities=27% Similarity=0.404 Sum_probs=335.4
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
...++|++++++++++++.|+.+. .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|
T Consensus 12 ~~~~~s~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q 82 (451)
T PRK06918 12 IPGPKAASLLERRQNIVPKGVSNG---------IPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQ 82 (451)
T ss_pred CCCCCHHHHHHHHHHhhccccccC---------CCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHH
Confidence 335778899999999998876432 37899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCC---CCCHHHHHHHHHHHhhCCCC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhc
Q 011856 128 MKKGTSFG---APCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 128 l~~~~~~~---~~~~~~~~la~~l~~~~~~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
++++.+.+ +.++...+|+++|++..|+. ++|+|+|||+||++.|+|+||.++++.+||.++++|||++.+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~ 162 (451)
T PRK06918 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMT 162 (451)
T ss_pred HHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhc
Confidence 99865332 35788999999999999843 69999999999999999999999999999999999999999999776
Q ss_pred CCC-CccCCC-CCCCCCCCCCCCceeeccCC-------C--HHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHH
Q 011856 203 GSG-VATLGL-PDSPGVPKGATYETLTAPFN-------D--VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFL 269 (476)
Q Consensus 203 g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-------d--~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (476)
+.. .....+ |..+++......+.+..+.. + ++.+++.+.. +++++++||+||+++++|.+.|+++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l 242 (451)
T PRK06918 163 SKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFV 242 (451)
T ss_pred CCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHH
Confidence 642 111111 11111100000001111110 1 2345555531 346899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCC
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~ 348 (476)
++|+++|++||++||+||||+|| |+|.+++++++++.||+++|||++++|+|+||+++++++++.+. +..+.+|++
T Consensus 243 ~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~---~~~~~~T~~ 319 (451)
T PRK06918 243 QEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESA---PGELGGTYA 319 (451)
T ss_pred HHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccC---CCCcCcCCC
Confidence 99999999999999999999999 99988888899999999999999999999999999999999876 345788999
Q ss_pred CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 349 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
+||++|++++++|+.++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..++. ...++.....
T Consensus 320 g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~-----~~~~~~~~~~ 394 (451)
T PRK06918 320 GSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRK-----TKEPDKTLTA 394 (451)
T ss_pred cCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCC-----cCCCcHHHHH
Confidence 99999999999999998889999999999999999999877788888999999999999863221 1123445567
Q ss_pred HHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 429 RFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 429 ~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.+.|+++||++.+++. +.+++ ++++|+++|++++++|++++.++
T Consensus 395 ~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 395 NICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred HHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 888899999999988642 45665 56799999999999999999765
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=504.26 Aligned_cols=391 Identities=23% Similarity=0.261 Sum_probs=316.4
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCCC-C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPS-I 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~----~~~~~~~~~~la~~l~~~~~~-~ 155 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++... ++.+++...+|+++|++.+|+ .
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 115 (460)
T PRK12403 36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY 115 (460)
T ss_pred CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc
Confidence 38999999999999999999999999999999999999999999999998432 235678899999999999974 5
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhcc---C---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceee--
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFT---G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-- 227 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~---~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (476)
++++|++||+||+++|+|+||.++ + +..|+.+.++|||++...+..++........+..+++........+.
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccc
Confidence 899999999999999999999873 3 45677889999999999988877543221111111111000000111
Q ss_pred -----ccCCC--HHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 228 -----APFND--VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 228 -----~~~~d--~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
.++++ +++|++.+. .+++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+|
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 11111 356766653 345689999999999999999999999999999999999999999999999 999999
Q ss_pred hhhccCCCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCCC-CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH-H
Q 011856 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-K 375 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~ 375 (476)
+++++|+.|||+|+||++++|+ |+|++++++++++.+.... .+.|++||++||++|++++++|+.+++++++++++ +
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~ 355 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDD 355 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999995 9999999999999885322 34578899999999999999999999888999996 9
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eC
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SL 453 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~ 453 (476)
++++|++.|+++..+++++.++++.|+|++++|..+...+... .........+...++++|+++.+.+ ..+++ ++
T Consensus 356 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl 432 (460)
T PRK12403 356 TGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRF--ANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPAL 432 (460)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccc--cchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCC
Confidence 9999999999998889999999999999999997542211100 0011224456778899999998653 23444 68
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++|++|+|+++++|++++.++
T Consensus 433 ~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 433 VAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999876
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=501.72 Aligned_cols=406 Identities=26% Similarity=0.370 Sum_probs=331.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
+.++.++.++++...... ..+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~--------~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~ 74 (443)
T PRK08360 3 PLEIIERYSKVISPANRV--------TYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLI 74 (443)
T ss_pred HHHHHHHHHHhccccccc--------ccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhcc
Confidence 456666666664432110 113899999999999999999999999999999999999999999999999864
Q ss_pred CCC---CCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-c
Q 011856 133 SFG---APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-A 207 (476)
Q Consensus 133 ~~~---~~~~~~~~la~~l~~~~~~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~ 207 (476)
+.. ..++...+|+++|++..|. .++|+|+|||+||++.|+|+||.++++.+|+.+.++|||++.+++..++... .
T Consensus 75 ~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~ 154 (443)
T PRK08360 75 HYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPV 154 (443)
T ss_pred CccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCccc
Confidence 332 3478889999999999984 5899999999999999999999999999999999999999999888766421 1
Q ss_pred cCCCCCCCCCCCCCCCceeeccC---------CCHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 208 TLGLPDSPGVPKGATYETLTAPF---------NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
...+....++......+.+..++ ++++.+++.+++ +++++++||+||+++++|.+.++++|+++|+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~ 234 (443)
T PRK08360 155 RALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKIL 234 (443)
T ss_pred ccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 11110011110000111111111 235567777764 3468999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHH
Q 011856 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~a 355 (476)
++||++||+||+|+|| |+|.+++.+++++.||++|+||++++|+|+|++++++++++.+. ...+.+|+++||++|+
T Consensus 235 ~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~---~~~~~~T~~~~p~~~a 311 (443)
T PRK08360 235 DEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLP---PLAHAFTLSGNPVASA 311 (443)
T ss_pred HHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhc---CCCCCCCCCcCHHHHH
Confidence 9999999999999999 99988888889999999999999999999999999999999886 3446789999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 356 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
+++++|+.++++++.+++++++++++++|+++..+++++.++++.|+|++++|.+++.. ..++......+...|+
T Consensus 312 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~-----~~~~~~~~~~~~~~l~ 386 (443)
T PRK08360 312 AALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRET-----KERAYEEAAKVVWRAW 386 (443)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcc-----cCccHHHHHHHHHHHH
Confidence 99999999988899999999999999999998888888999999999999999753211 1123344567889999
Q ss_pred HCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 436 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 436 ~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++|+++.+...+.+++ ++.+|++|||+++++|+++++++
T Consensus 387 ~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 387 ELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred HCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998765566666 89999999999999999998764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=494.48 Aligned_cols=372 Identities=26% Similarity=0.364 Sum_probs=325.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||+|||+||||.+++++.++||+||+|.+|+.+|+++..+.+ +.++...+|+++|.+..|..+++
T Consensus 22 ~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v 101 (408)
T PRK04612 22 RQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKV 101 (408)
T ss_pred CCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 4899999999999999999999999999999999999999999999999854433 45788899999999988766899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc-------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 159 RFVNSGTEACMGVLRLARAFT-------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
+|++||+||++.|+|+||.++ ++.+||.++++|||++.+++..++.......+.. ....+..+|++
T Consensus 102 ~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~~ 174 (408)
T PRK04612 102 FLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEP-------LPGGFRYVDFN 174 (408)
T ss_pred EEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCC-------CCCCceEcCCC
Confidence 999999999999999999883 3567999999999999999887775332211110 11235678999
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|++.++++++ ++++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+|| |+|.+++..++++.||++
T Consensus 175 d~~~l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~ 252 (408)
T PRK04612 175 DVEALEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIV 252 (408)
T ss_pred CHHHHHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEE
Confidence 9999999986 3589999999999999999999999999999999999999999999999 999888877889999999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||||++++|+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++.+++++++++++++|+++..+
T Consensus 253 t~~K~l~~G~piga~~~~~~~~~~~~~---~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~ 329 (408)
T PRK04612 253 TLAKALGGGFPIGAMLAGPKVAETMQF---GAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAE 329 (408)
T ss_pred EEcchhcCCCceEEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888763 35778999999999999999999988999999999999999999999888
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
++++.+++|.|+|+++++..+ .......+.+.|+++||++.+.+.+.+++ ++.+|++|+++++++|+
T Consensus 330 ~~~i~~vrg~Gl~~~i~~~~~-----------~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~ 398 (408)
T PRK04612 330 FGVFAQVRGRGLMLGAVLAPA-----------HAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLR 398 (408)
T ss_pred CCCeeeeeccceEEEEEecCc-----------hhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHH
Confidence 899999999999999999632 11234678889999999998876666766 68999999999999999
Q ss_pred HHHHHhh
Q 011856 469 KVKMRFL 475 (476)
Q Consensus 469 ~~~~~~~ 475 (476)
+++.++.
T Consensus 399 ~~l~~~~ 405 (408)
T PRK04612 399 LALADYV 405 (408)
T ss_pred HHHHHHh
Confidence 9998753
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=499.52 Aligned_cols=384 Identities=28% Similarity=0.367 Sum_probs=322.0
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+++|+++.... .+.++...+|+++|++.+| +.++
T Consensus 26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~ 105 (433)
T PRK08117 26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDC 105 (433)
T ss_pred CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence 48999999999999999999999999999999999999999999999885322 2467889999999999996 6789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-ccCC-CCCCCCCCCCCCCcee---------
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLG-LPDSPGVPKGATYETL--------- 226 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~~~--------- 226 (476)
++|+|||+||++.|+|+||.++++.+||.++++|||++.+++..++... .... .+..+++......+..
T Consensus 106 v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (433)
T PRK08117 106 FFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPE 185 (433)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchh
Confidence 9999999999999999999999999999999999999999887665321 1111 1111121000000000
Q ss_pred eccCCCHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc
Q 011856 227 TAPFNDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (476)
Q Consensus 227 ~~~~~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (476)
...++|++++++++++ .++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+++++++
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~ 265 (433)
T PRK08117 186 VCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTF 265 (433)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhc
Confidence 1112467788888864 34689999999999999999999999999999999999999999999999 99988888899
Q ss_pred CCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383 (476)
Q Consensus 304 g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 383 (476)
|+.||++|+||++++|+|+|++++++++++.+. ...+.+|+++||++|++++++|+.++++++.+++++++++++++
T Consensus 266 gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~---~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 342 (433)
T PRK08117 266 GVVPDIMTIAKGIASGLPLSAVVASKELMEQWP---LGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALER 342 (433)
T ss_pred CCCCCEeehhhhccCCCcceeEEEcHHHHhhcc---CCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998875 34578899999999999999999998789999999999999999
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHH
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDD 459 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~ 459 (476)
|+++..+++.+.++++.|.|++++|.++. ..++......+.+.++++||++.+.+. +.+++ ++.+|+++
T Consensus 343 L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~-------~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~ 415 (433)
T PRK08117 343 LEVLKEKHPVIGDVRGIGLMIGIEIVDPD-------GEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEE 415 (433)
T ss_pred HHHHHhcCCceeeeecCCcEEEEEEecCC-------CCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHH
Confidence 99988788888899999999999997542 112344556788999999999876542 45565 48999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 011856 460 IQHTITAAEKVKMRFL 475 (476)
Q Consensus 460 i~~~~~~l~~~~~~~~ 475 (476)
|++++++|+++++++.
T Consensus 416 i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 416 IDEGLDILDEALTEYE 431 (433)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=494.95 Aligned_cols=369 Identities=29% Similarity=0.394 Sum_probs=324.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.|||+||||.+++++++|||+||+|.+|+.+|+++.. ..+++++...+|+++|++.. +.+++
T Consensus 17 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~-~~~~~ 95 (397)
T TIGR03246 17 APFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT-FADKV 95 (397)
T ss_pred CCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCEE
Confidence 4899999999999999999999999999999999999999999999999843 23456788899999999988 46899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||+|||+.|+++||.++ ++.+||.++++|||++...+..++.......+ ......+..+||||
T Consensus 96 ~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d 168 (397)
T TIGR03246 96 FFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF-------APLPGGIKHAPYND 168 (397)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC-------CCCCCceEEeCCCC
Confidence 999999999999999999884 78899999999999999888777653221111 01122467889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++++++.+.+ ++++||+||+++++|.+.|+++||++|+++|++||+++|+||+|+|| |+|.+++++++++.||++|
T Consensus 169 ~~~l~~~l~~---~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t 245 (397)
T TIGR03246 169 LAAAKALISD---KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILT 245 (397)
T ss_pred HHHHHHHhcc---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEE
Confidence 9999999963 69999999999999999999999999999999999999999999999 9999888899999999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+||++++|+|+|++++++++++.+.. ..+.+||++||+++++++++|+.++++++.+++++++++++++|+++..++
T Consensus 246 ~~K~lggG~pigav~~~~~i~~~~~~---~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~ 322 (397)
T TIGR03246 246 SAKALGGGFPIGAMLTTTEIAAHLKV---GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARY 322 (397)
T ss_pred eehhhhCCcceeEEEEcHHHHHhccC---CCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998863 346789999999999999999998878899999999999999999987778
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+++.++++.|.|+++++.+. .......+++.|+++|+++.+.+.+.+|+ ++.+|++||++++++|++
T Consensus 323 ~~~~~vrg~G~~~~i~~~~~-----------~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~ 391 (397)
T TIGR03246 323 NVFSEIRGKGLLIGAVLTEA-----------YQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFER 391 (397)
T ss_pred CCeEeeecCceEEEEEEcCc-----------hhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 88889999999999998532 01234678899999999998876666776 799999999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
++.++
T Consensus 392 ~l~~~ 396 (397)
T TIGR03246 392 AIEQV 396 (397)
T ss_pred HHHHh
Confidence 99875
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=540.13 Aligned_cols=386 Identities=24% Similarity=0.294 Sum_probs=325.6
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHhhCC-CCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP-SIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~~~~~~~~la~~l~~~~~-~~e~v 158 (476)
.|+++++|+|+|+||.|||+||||.+++ .++||+||+|.+|+.+|++++ .+..+.++...+|+++|++.+| +.+++
T Consensus 606 ~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 683 (1013)
T PRK06148 606 DPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVA 683 (1013)
T ss_pred CCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEE
Confidence 4899999999999999999999999985 789999999999999999985 4445678899999999999998 46899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCC--C---
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFN--D--- 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--d--- 232 (476)
+|+|||+||++.|||+||.+|++.+||.++++|||++.+++..++........+. ..++......+.+..|++ +
T Consensus 684 ~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 763 (1013)
T PRK06148 684 FFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEH 763 (1013)
T ss_pred EEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhh
Confidence 9999999999999999999999999999999999999998877653211100010 011111111223445565 2
Q ss_pred ----HHHHHHHHh---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhcc
Q 011856 233 ----VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF 303 (476)
Q Consensus 233 ----~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~ 303 (476)
.+.+++.++ .+++++++||+||+++++|.+.|+++||++|+++|++||+++|+||||||| |+|. +|+++++
T Consensus 764 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~ 843 (1013)
T PRK06148 764 GRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQ 843 (1013)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhc
Confidence 245666664 345689999999999999999999999999999999999999999999999 9996 8999999
Q ss_pred CCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383 (476)
Q Consensus 304 g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 383 (476)
|++|||+|+||++|||+|+|++++++++++.+.+. ..+++||++||++|++++++|++++++++.+++++++++|+++
T Consensus 844 gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g--~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~ 921 (1013)
T PRK06148 844 GVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNG--MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAG 921 (1013)
T ss_pred CCCcceeeecccccCCcceEEEEEcHHHHhhccCC--CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988642 3467999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceE--EeCCCcHHH
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDD 459 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~--~~~~~t~e~ 459 (476)
|+++..+++++.+|+|.|+|++++|..+.. ...++......+.+.|+++||++.+.+. +.++ +++++|+++
T Consensus 922 L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~-----~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~ 996 (1013)
T PRK06148 922 LRELQDRFDIIGDVRGMGLFLGIELVTDRK-----TKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRAD 996 (1013)
T ss_pred HHHHHHhCCCceEEeeeceEEEEEecCCcc-----ccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHH
Confidence 999988999999999999999999975321 1223445567889999999999987653 3343 489999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 011856 460 IQHTITAAEKVKMRFL 475 (476)
Q Consensus 460 i~~~~~~l~~~~~~~~ 475 (476)
+|+++++|++++.++.
T Consensus 997 id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 997 ADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-64 Score=499.64 Aligned_cols=378 Identities=23% Similarity=0.304 Sum_probs=319.5
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~-~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
|+++.+++|+|+||.|||+||||.++++++++||+||+|.+|+++|+++... + .+.++...+|+++|++..| +.++
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~ 105 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC 105 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence 5789999999999999999999999999999999999999999999998532 2 3478889999999999998 4789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCce---ee
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYET---LT 227 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~---~~ 227 (476)
++|++||+||++.|+|+||.+ +++.+||.++++|||++..++..++... ....+ +..+++........ ..
T Consensus 106 v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (428)
T PRK07986 106 VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGE 185 (428)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchh
Confidence 999999999999999999988 6789999999999999998887765321 11111 11111100000000 01
Q ss_pred ccCCCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC
Q 011856 228 APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305 (476)
Q Consensus 228 ~~~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~ 305 (476)
+++||++++++.++++++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+++++|+
T Consensus 186 ~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv 265 (428)
T PRK07986 186 WDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI 265 (428)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC
Confidence 2357889999999876678999999996 8889999999999999999999999999999999999 9999999999999
Q ss_pred CCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCC--CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 306 ~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~--~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
.||++|+||+++|| +|+|++++++++++.+.... .+.+++||++||++|++++++|+.++++++++++++++++|++
T Consensus 266 ~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~ 345 (428)
T PRK07986 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLRE 345 (428)
T ss_pred CCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999 59999999999999986421 2457889999999999999999999988999999999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 460 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i 460 (476)
.|+++. +++.+.++++.|+|+++++.++. ....+.+.|+++||++.+.+ +.+++ ++++|++||
T Consensus 346 ~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~-------------~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei 410 (428)
T PRK07986 346 ELAPLR-DAPMVADVRVLGAIGVVETTRPV-------------NMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQL 410 (428)
T ss_pred HHHHHh-cCCCEEeEeccceEEEEEeCCcc-------------cHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHH
Confidence 999875 47788899999999999996421 13568889999999998865 35555 799999999
Q ss_pred HHHHHHHHHHHHHh
Q 011856 461 QHTITAAEKVKMRF 474 (476)
Q Consensus 461 ~~~~~~l~~~~~~~ 474 (476)
++++++|++++++-
T Consensus 411 ~~~~~~l~~~l~~~ 424 (428)
T PRK07986 411 QRLTAAVNRAVQDE 424 (428)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-63 Score=494.55 Aligned_cols=375 Identities=26% Similarity=0.404 Sum_probs=320.1
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCCC--CC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVPS--IE 156 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~~--~e 156 (476)
|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..+.. ..++...+|+++|++..|. .+
T Consensus 23 ~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (421)
T PRK09792 23 NFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA 102 (421)
T ss_pred CeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCc
Confidence 789999999999999999999999999999999999999999999999864332 3678889999999999873 47
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-ccCCCCCCCCCCCCCCCceeeccC-----
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF----- 230 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~----- 230 (476)
+++|++||+||++.|+|+||.++++.+||.++++|||++.+++..++... ....+.. ....+..+|+
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~-------~~~~~~~v~~p~~~~ 175 (421)
T PRK09792 103 KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP-------FPGSVYHVPYPSDLH 175 (421)
T ss_pred eEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCC-------CCCCcEEcCCCcccc
Confidence 99999999999999999999999999999999999999999998766421 1111100 0112333333
Q ss_pred -----CCHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc
Q 011856 231 -----NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (476)
Q Consensus 231 -----~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (476)
++++.+++++++ .++++++||+||+++++|.+.++++|+++|+++|++||++||+|||++|| |+|.++++++
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~ 255 (421)
T PRK09792 176 GISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDH 255 (421)
T ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHh
Confidence 346888888874 24579999999999999999999999999999999999999999999999 9998899999
Q ss_pred cCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 303 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 303 ~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
+++.||++||||++++|+|+|++++++++++.+.. ..+.+||++||++|++++++++.++++++.++++++++++++
T Consensus 256 ~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 332 (421)
T PRK09792 256 YADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAP---GGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKN 332 (421)
T ss_pred cCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 347789999999999999999999888899999999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEE--eCCCcHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSD 458 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~--~~~~t~e 458 (476)
.|+++..+++.+.+++|.|+|++++|.++.. ..++......+.+.|+++||++.+.+ .+.+++ +++++++
T Consensus 333 ~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~------~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ 406 (421)
T PRK09792 333 TLIDAKESVPAIAAVRGLGSMIAAEFNDPQT------GEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDA 406 (421)
T ss_pred HHHHHHHhCCCcceecccceEEEEEecCCcc------CCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHH
Confidence 9999988888888999999999999964321 11233446788999999999997543 244544 6889999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKVKM 472 (476)
Q Consensus 459 ~i~~~~~~l~~~~~ 472 (476)
|+++++++|++++.
T Consensus 407 ei~~~~~~l~~~l~ 420 (421)
T PRK09792 407 QFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=494.49 Aligned_cols=385 Identities=25% Similarity=0.322 Sum_probs=317.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.. .+..+++...+|+++|++.+| +.+
T Consensus 28 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 107 (442)
T PRK13360 28 APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLN 107 (442)
T ss_pred CCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999998743 234568889999999999997 578
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCC-ceeec
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATY-ETLTA 228 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~-~~~~~ 228 (476)
+|+|++||+||++.|+|+||.++ ++.+||.+.++|||++.+++..++.......+ +...++...... .....
T Consensus 108 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~ 187 (442)
T PRK13360 108 HVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARN 187 (442)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhcc
Confidence 99999999999999999999884 57899999999999999988877654322111 111111000000 00010
Q ss_pred cCC---------CHHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 229 PFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 229 ~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
++. .+++||++++.+ ++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 267 (442)
T PRK13360 188 AFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAP 267 (442)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 110 256788888643 4689999999999999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCC----CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
|+++++|+.||++||||++++| +|+|++++++++++.+.... ...+.+||++||++|++++++|+.++++++.++
T Consensus 268 ~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~ 347 (442)
T PRK13360 268 FAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347 (442)
T ss_pred hhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999988 79999999999999875321 235778999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
++++++++++.|+++. +++.+.++++.|+|+++++..... .+.....++...|+++||++.+.+ +.+++
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~--------~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~ 417 (442)
T PRK13360 348 AARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDG--------KPGKRAYEVFLKCFEKGLMIRYTG-DILALS 417 (442)
T ss_pred HHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCC--------CcchhHHHHHHHHHHCCcEEEecC-CEEEEe
Confidence 9999999999999874 477788999999999999964211 112234567788999999998765 34555
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++.+|++|||+++++|++++++++
T Consensus 418 Ppl~~t~~eid~~~~~l~~~l~~~~ 442 (442)
T PRK13360 418 PPLIIEEAQIDELFDILAQALKETI 442 (442)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999998763
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=492.69 Aligned_cols=399 Identities=30% Similarity=0.513 Sum_probs=331.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
|.++++++++++|+|++++.|.+.++. .+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++
T Consensus 1 s~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~ 80 (431)
T PRK06209 1 SQLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG 80 (431)
T ss_pred CHHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC
Confidence 468999999999999998888775443 4589999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEE-eCCCCCCchhHHhhcCCCCccCC
Q 011856 132 TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 132 ~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~-~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
..+..+...+.+|+++|.+.+|+.++++|+|||+||++.|+|+||.++++.+|+.+ .++|||+..+.. |..
T Consensus 81 ~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~---g~~----- 152 (431)
T PRK06209 81 CNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFI---GTT----- 152 (431)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCcccccccccc---ccC-----
Confidence 76666777788999999999987789999999999999999999999999999999 678887543322 110
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
+...+.+.........++|||+++|+++++++++++++||+||++++ .++++||++|+++|++||++||+||||+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~t 227 (431)
T PRK06209 153 -PMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMIT 227 (431)
T ss_pred -CCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 11112211112235678899999999999876678999999999876 7789999999999999999999999999
Q ss_pred CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHh--hcC---CCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM--VAP---AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 291 g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~--l~~---~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
||+.+..+..+++|+.||++|+||++|+|+|+|++++++++++. +.. ...+.+.+|+++||++|++++++|+.++
T Consensus 228 G~~~~~~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~ 307 (431)
T PRK06209 228 GFRWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR 307 (431)
T ss_pred cCCcCcchhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh
Confidence 99333345566789999999999999999999999999999987 321 1223478899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC
Q 011856 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 445 (476)
+++++++++++++++++.|+++..++++..++++.|.++.+++...... ..+.......+.+.|+++|+++.
T Consensus 308 ~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~~p--- 379 (431)
T PRK06209 308 DEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGN-----GQPSQAFRTLFLQETIRRGVLMP--- 379 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcc-----cCCcHHHHHHHHHHHHHCCcccc---
Confidence 8889999999999999999998888898888999999888887532110 01223334578889999999873
Q ss_pred CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++..||++||++++++|++++.++
T Consensus 380 --~l~is~~ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 380 --SLVVSYAHGDADIERTIDAVHGALGVY 406 (431)
T ss_pred --cccccccCCHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999998765
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=491.42 Aligned_cols=383 Identities=25% Similarity=0.348 Sum_probs=319.4
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCCC--C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVPS--I 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~~--~ 155 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.. .+++...+|+++|.+..|+ .
T Consensus 15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 94 (420)
T TIGR00700 15 LPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGP 94 (420)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999864322 4567789999999999873 4
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC-CccCCC-CCCCCCCCCCCCcee-------
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETL------- 226 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~------- 226 (476)
++++|++||+||++.|+|+||.++++.+||.+.++|||++.+++..++.. .....+ |..+++......+..
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 79999999999999999999999999999999999999999999876642 111111 111111000000000
Q ss_pred eccCC-CHHHHHHHHh--cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc
Q 011856 227 TAPFN-DVSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (476)
Q Consensus 227 ~~~~~-d~~~le~~l~--~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (476)
..+++ +++.+++.+. .+++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|.++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~ 254 (420)
T TIGR00700 175 QLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEH 254 (420)
T ss_pred chhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhh
Confidence 01112 2667888774 346789999999999999999999999999999999999999999999999 9998888899
Q ss_pred cCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 303 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 303 ~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
+++.||++||||++++|+|+||+++++++++.+.. ..+.+|+++||++|++++++|+.++++++.++++++++++++
T Consensus 255 ~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 331 (420)
T TIGR00700 255 EGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAP---GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331 (420)
T ss_pred cCCCCCEEEeeccccCCcceEEEEecHHHHhhcCC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 457889999999999999999999888999999999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSD 458 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e 458 (476)
+|+++..+++.+.++++.|+|+++++.++. ...++......+.+.|+++||++.|++. +.+++ +++++++
T Consensus 332 ~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~------~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~ 405 (420)
T TIGR00700 332 RLTTLKAVDPRIGDVRGLGAMIAVELVDPG------TTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDE 405 (420)
T ss_pred HHHHHHhhCCCEEEeeccceEEEEEEecCC------CCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHH
Confidence 999988888888899999999999996421 1123445567788889999999998642 45666 4568999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKVKM 472 (476)
Q Consensus 459 ~i~~~~~~l~~~~~ 472 (476)
++++++++|+++++
T Consensus 406 ~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 406 LLSEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=489.86 Aligned_cols=370 Identities=24% Similarity=0.336 Sum_probs=314.4
Q ss_pred eEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCeE
Q 011856 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEMV 158 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~-~~~~~~~~~la~~l~~~~~-~~e~v 158 (476)
+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++..+ + ++.++...+|+++|++..| +.++|
T Consensus 28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 107 (429)
T PRK06173 28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKI 107 (429)
T ss_pred ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEE
Confidence 469999999999999999999999999999999999999999999998542 2 4578889999999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||+||++.|+|+||.+ +++.+||.+.++|||.+..++..++... ....+ +.... +..+|+
T Consensus 108 ~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--------~~~~~~ 179 (429)
T PRK06173 108 FFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPV--------QYFLPQ 179 (429)
T ss_pred EEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCC--------CeEeCC
Confidence 99999999999999999988 4688999999999999888877655311 11001 00011 111111
Q ss_pred -----------CCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 231 -----------NDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 231 -----------~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
++++.|++.++++++++++||+||+ ++++|.+.|+++|+++|+++|++||++||+||||+|| |+|.+
T Consensus 180 p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 259 (429)
T PRK06173 180 PSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKL 259 (429)
T ss_pred CCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcc
Confidence 1477788888766678999999997 9999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (476)
|+++++|+.|||+||||+++|| +|++++++++++++.+.+. ....+++||++||++|++++++|+.++++++.++++
T Consensus 260 ~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 260 FALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred hHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999 5999999999999988531 224578899999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--e
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~ 452 (476)
+++++|+++|+++ .+++.+.++++.|+|+++++.+.. ....+.+.|+++||++.+.+ +.+++ +
T Consensus 340 ~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~-------------~~~~i~~~l~e~Gi~v~~~g-~~l~~~Pp 404 (429)
T PRK06173 340 RIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPV-------------NMATLQPRFVEHGIWVRPFG-KLVYIMPP 404 (429)
T ss_pred HHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCcc-------------cHHHHHHHHHHCCeEEEecC-CEEEEeCC
Confidence 9999999999976 456777789999999999996421 12567889999999998875 35554 7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+++|++|+++++++|++++.++.
T Consensus 405 l~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 405 FIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=486.83 Aligned_cols=394 Identities=20% Similarity=0.211 Sum_probs=314.1
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
+...+++++++++++++++. +.+ ++|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+
T Consensus 16 ~~~~~~s~~l~~~~~~~~~~------~~~----~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~ 85 (464)
T TIGR00699 16 EIPGPKSKAAMKQLNEVFDA------RAV----HFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQS 85 (464)
T ss_pred CCCCccHHHHHHHHHhhhcc------cCc----ccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHH
Confidence 34467788999998877522 111 24999999999999999999999999999999999999999999998
Q ss_pred H-HH-hc-CCCCCCCHHHHHHHHHHHh----hCC-CCCeEEEeCCHHHHHHHHHHHHHhccC------------------
Q 011856 127 T-MK-KG-TSFGAPCLLENVLAEMVIS----AVP-SIEMVRFVNSGTEACMGVLRLARAFTG------------------ 180 (476)
Q Consensus 127 ~-l~-~~-~~~~~~~~~~~~la~~l~~----~~~-~~e~v~~~~sGseA~~~al~~ar~~~~------------------ 180 (476)
+ +. .. ....+.++...+|+++|.+ ..| +.++|+|+|||+||++.|+|+||.+++
T Consensus 86 q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~ 165 (464)
T TIGR00699 86 PEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESC 165 (464)
T ss_pred HHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 5 33 32 2223566777888888754 666 578999999999999999999987621
Q ss_pred ---------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCc-----------eeeccCCCHHHHHHHH
Q 011856 181 ---------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE-----------TLTAPFNDVSALENLF 240 (476)
Q Consensus 181 ---------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~le~~l 240 (476)
+.+||.+.++|||++.+++..++........+...+........ ......++++.+++++
T Consensus 166 ~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l 245 (464)
T TIGR00699 166 MDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLI 245 (464)
T ss_pred ccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHH
Confidence 23899999999999999998877532111011001110000000 0001123577888999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCC--CchhhhhhhcC
Q 011856 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIG 317 (476)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pDi~t~sK~lg 317 (476)
+++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+. |||+|+||+++
T Consensus 246 ~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg 325 (464)
T TIGR00699 246 KKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQ 325 (464)
T ss_pred HhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhc
Confidence 8766789999999999999999999999999999999999999999999999 99999999999997 99999999996
Q ss_pred -CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cce
Q 011856 318 -GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 395 (476)
Q Consensus 318 -~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 395 (476)
+|+. +++ +. +....+..+++||++||++|++++++|+.++++++.+++++++++|+++|+++..+++ .+.
T Consensus 326 ~gG~~----~~~-~~---~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~ 397 (464)
T TIGR00699 326 TAGYF----FHD-PA---FRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQ 397 (464)
T ss_pred cCCcc----ccc-hh---ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 5653 223 22 2222345688999999999999999999999899999999999999999999988888 788
Q ss_pred Eee--eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 396 CGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 396 ~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
+++ +.|+|+++++.+ ......+.+.++++|+++.+.+.+.+++ ++++|++|||+++++|++++
T Consensus 398 ~vRg~G~Glm~gie~~~-------------~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 398 NLRGKGRGTFIAWDTPD-------------EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred eecccCeEEEEEEecCC-------------HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999 999999999832 2234678899999999998876555655 79999999999999999864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=490.60 Aligned_cols=377 Identities=27% Similarity=0.380 Sum_probs=323.5
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~-~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.. + +++++...+|+++|++.+| +.+
T Consensus 24 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 103 (423)
T PRK05964 24 PPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD 103 (423)
T ss_pred CCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999999999999999999998542 2 4678889999999999998 578
Q ss_pred eEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+++|++||+||++.|+|+||.+ +++.+||.++++|||++.+++..++....... ..+.. .....+.+|+
T Consensus 104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~---~~~~~--~~~~~~~~~~ 178 (423)
T PRK05964 104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL---YTPLL--FEQVTAPFPP 178 (423)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc---ccCcC--CCCEEeCCCc
Confidence 9999999999999999999988 68899999999999999999887765332211 11111 1123455666
Q ss_pred CC-----HHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc
Q 011856 231 ND-----VSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (476)
Q Consensus 231 ~d-----~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (476)
+| ++++++.++++++++++||+|| +++++|.+.++++||++|+++|++||++||+||||+|| |+|.+++++++
T Consensus 179 ~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~ 258 (423)
T PRK05964 179 DGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQA 258 (423)
T ss_pred chhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhc
Confidence 77 8899999987667899999999 68999999999999999999999999999999999999 99988888999
Q ss_pred CCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (476)
Q Consensus 304 g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (476)
++.||++++||++++| +|+|++++++++++.+... ....+.+||++||+++++++++|+.++++++.+++++++++
T Consensus 259 ~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~ 338 (423)
T PRK05964 259 GVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAG 338 (423)
T ss_pred CCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999988 8999999999999988531 23457889999999999999999999888899999999999
Q ss_pred HHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcH
Q 011856 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 457 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~ 457 (476)
+++.|+++. +++.+.++++.|+|+++++.+++. ......+.+.|+++||++.+.+ +.+++ ++.+|+
T Consensus 339 l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~~----------~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~ 406 (423)
T PRK05964 339 LAEGLEPFR-DLPGVADVRVLGAIGAVELDRPVL----------ERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITA 406 (423)
T ss_pred HHHHHHhhc-cCCCeEEeecccEEEEEEeccCcc----------hhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCH
Confidence 999999874 466677899999999999964310 0234678899999999998764 45665 578999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+|||+++++|+++++++
T Consensus 407 edId~~v~~l~~al~~~ 423 (423)
T PRK05964 407 EELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999864
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-62 Score=490.13 Aligned_cols=384 Identities=26% Similarity=0.340 Sum_probs=316.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.. .+.+.++...+|+++|++.+| +.+
T Consensus 31 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 110 (445)
T PRK09221 31 APRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLD 110 (445)
T ss_pred CCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999998843 234568888999999999997 478
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCc-eeec
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYE-TLTA 228 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~ 228 (476)
+|+|++||+||++.|+|+||.++ ++.+||.+.++|||++.+++..++.......+ +...++....... ....
T Consensus 111 ~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (445)
T PRK09221 111 HVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPEN 190 (445)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCcccccc
Confidence 99999999999999999999885 46789999999999999988877643222111 1111110000000 0000
Q ss_pred cCC---------CHHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 229 PFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 229 ~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
++. ..++++++++.+ .+++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~ 270 (445)
T PRK09221 191 AFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAA 270 (445)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchh
Confidence 010 146788888754 3689999999999999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCC----CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
++++++++.||++|+||++++| +|+|++++++++++.+.... ...+.+||++||++|++++++|+.++++++.++
T Consensus 271 ~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~ 350 (445)
T PRK09221 271 FAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFER 350 (445)
T ss_pred hHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999988 79999999999999875321 234778999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
+++++++++++|+++. +++.+.++++.|+|+++++...... +......+.+.|+++||++.+.+ +.+++
T Consensus 351 ~~~~g~~l~~~l~~l~-~~~~v~~vrg~Gl~~~v~~~~~~~~--------~~~~~~~~~~~~~~~Gv~~~~~~-~~lr~~ 420 (445)
T PRK09221 351 AAELAPYFEDAVHSLK-GLPHVIDIRNIGLVAGIELAPRPGA--------PGARGYEAFMKCFEKGLLVRYTG-DTIALS 420 (445)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEecCceEEEEEEeccccc--------ccchHHHHHHHHHHCCeEEeecC-CEEEEE
Confidence 9999999999999874 5677889999999999999642110 11223567889999999997754 35655
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+|++|||+++++|++++.++
T Consensus 421 Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 421 PPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999875
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-62 Score=476.62 Aligned_cols=352 Identities=27% Similarity=0.370 Sum_probs=306.4
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeEE
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVR 159 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v~ 159 (476)
|+.+.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++... ..++++...+|++++++.. +.++++
T Consensus 7 ~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~ 85 (364)
T PRK04013 7 RLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV-NYEYVY 85 (364)
T ss_pred CccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc-CCCEEE
Confidence 8899999999999999999999999999999999999999999999998533 2357888999999999988 578999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
|+|||+||++.|+|+||.++++++||.++++|||++..++..++.......+ . ....++..+|++|++++++.
T Consensus 86 ~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~--~-----p~~~~~~~~~~~d~~~l~~~ 158 (364)
T PRK04013 86 MGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDF--E-----PLVPGFKHIPFNDVEAAKEA 158 (364)
T ss_pred EeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCC--C-----CCCCCcEEecCCCHHHHHHH
Confidence 9999999999999999999999999999999999999988776653222111 0 11124667889999999998
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCC
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGG 319 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G 319 (476)
+. +++++||+||+++++|.+.++++||++|+++|++||++||+|||++|||+|.+|+++++++.||++|+||++++|
T Consensus 159 i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lggG 235 (364)
T PRK04013 159 IT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNG 235 (364)
T ss_pred hc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEecccccCC
Confidence 86 379999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+|+|+++.++++ . +..+++||++||++|++++++|+.++++++.+++++. |.++. .+.+.+++|
T Consensus 236 ~P~~a~~~~~~~----~---~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~--~~~v~~vRG 299 (364)
T PRK04013 236 VPVSLTLTNFDV----E---RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK--GERVVTTRG 299 (364)
T ss_pred ceeEEEEecccc----c---CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc--cCcceeeee
Confidence 999999998775 1 2358899999999999999999999999999988764 23332 266889999
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.|+|++++|.++ ...+.+.++++|+++.+.+.+.+++ ++++|++|+++++++|++++++++
T Consensus 300 ~Gl~~gve~~~~---------------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 300 RGLMIGIVLKKP---------------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred CcEEEEEEeCCc---------------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 999999999531 2467889999999998876555655 799999999999999999998764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=486.26 Aligned_cols=369 Identities=24% Similarity=0.365 Sum_probs=313.4
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CC--CCCCCHHHHHHHHHHHhhC--C-C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TS--FGAPCLLENVLAEMVISAV--P-S 154 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~--~~~~~~~~~~la~~l~~~~--~-~ 154 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++. .. ....++...+|+++|.+.. | +
T Consensus 17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG 96 (412)
T ss_pred CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence 489999999999999999999999999999999999999999999999863 21 2245788899999999975 3 2
Q ss_pred C-CeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC--
Q 011856 155 I-EMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 230 (476)
Q Consensus 155 ~-e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 230 (476)
. ++++| +|||+||++.|+|+||.+++|.+||.++++|||++.+++..++.......+ +.+ ...+..+|+
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~----~~~---~~~~~~~p~~~ 169 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGA----GVP---LSNVSRMPYDG 169 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCC----CCC---CCCeEECCCCC
Confidence 2 36766 499999999999999999999999999999999999999887753322111 111 113455555
Q ss_pred ------CCHHHHHHHHhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh
Q 011856 231 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300 (476)
Q Consensus 231 ------~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~ 300 (476)
++++.+++++++++ +++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| |+|.++++
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~ 249 (412)
T TIGR02407 170 YLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSF 249 (412)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHh
Confidence 34788999987543 468999999999999999999999999999999999999999999999 99999999
Q ss_pred hccCCCCchhhhhhhcCC-CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 011856 301 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITG 378 (476)
Q Consensus 301 ~~~g~~pDi~t~sK~lg~-G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~~~~~~~~~~~~~ 378 (476)
+++++.||++++||++++ |+|+|++++++++ +.+. ...+.+||++||++|+++.++|+. ++++++.++++++++
T Consensus 250 ~~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~---~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~ 325 (412)
T TIGR02407 250 EPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWK---PGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSE 325 (412)
T ss_pred cccCCCCCEEEechhccCCccceeEEEEchhh-hccC---CCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999998 9999999999886 5554 345788999999999999999995 777889999999999
Q ss_pred HHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eC
Q 011856 379 ELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SL 453 (476)
Q Consensus 379 ~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~ 453 (476)
+++++|+++..+++ .+.++++.|+|+++++.+ ......+...|+++||++.+.+. +.+++ ++
T Consensus 326 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~-------------~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l 392 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIKQVRGRGLMQGIECGD-------------GDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPL 392 (412)
T ss_pred HHHHHHHHHHhhCCCceEeeecceeEEEEEecC-------------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCC
Confidence 99999999887776 678999999999999953 22346788999999999987543 34554 78
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 011856 454 AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+|++|+++++++|++++++
T Consensus 393 ~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=486.71 Aligned_cols=375 Identities=20% Similarity=0.285 Sum_probs=310.6
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~-~~~~~~~~~la~~l~~~~~-~~e 156 (476)
+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..+ + +..++...+|+++|++..| +.+
T Consensus 22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 101 (422)
T PRK05630 22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD 101 (422)
T ss_pred CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence 58999999999999999999999999999999999999999999999998532 2 3567888999999999987 478
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCceeec
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
+++|++||+||++.|+|+||.++ ++.+||.+.++|||.+.+++..++... ....+ |...+............
T Consensus 102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 181 (422)
T PRK05630 102 HVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS 181 (422)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC
Confidence 99999999999999999999885 578899999999999999988765321 11000 11111100000000011
Q ss_pred cCCC----HHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc
Q 011856 229 PFND----VSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (476)
Q Consensus 229 ~~~d----~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (476)
++++ .+.+++++. +++++||+||+ ++.+|.+.|+++|+++|+++|++||++||+||||+|| |+|.+|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 258 (422)
T PRK05630 182 SPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLA 258 (422)
T ss_pred ChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHh
Confidence 1222 244555554 37999999996 9999999999999999999999999999999999999 9999999999
Q ss_pred cCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011856 303 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (476)
Q Consensus 303 ~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (476)
+|+.|||+|+||+++|| +|+|++++++++++.+... +.+.|++||++||++|++++++|+.++++++.++++++++
T Consensus 259 ~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~ 338 (422)
T PRK05630 259 AGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEA 338 (422)
T ss_pred cCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999999 5999999999999988531 2346889999999999999999999988899999999999
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCc
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHS 456 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t 456 (476)
+|++.|+++. +++.+.++++.|+|+++++.++. ....+.+.++++|+++.+.+ +.+++ ++++|
T Consensus 339 ~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~~-------------~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it 403 (422)
T PRK05630 339 ELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPV-------------DMEEATQAAVDHGVWLRPFG-RLVYVMPPYITT 403 (422)
T ss_pred HHHHHHHHhh-cCCCeeeeeccccEEEEEECCcc-------------cHHHHHHHHHHCCeEEEecC-CEEEEECCccCC
Confidence 9999999764 47778899999999999996421 12467889999999998765 45554 79999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVKMR 473 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~ 473 (476)
++|+|+++++|++++++
T Consensus 404 ~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 404 SEQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999865
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=479.60 Aligned_cols=363 Identities=27% Similarity=0.425 Sum_probs=310.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.|||+||||.++++++++||+||+|.+|+.+|+++..+ ....++.+.+|++++.+.. +.+++
T Consensus 18 ~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 96 (395)
T PRK03715 18 PDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS-CFDKV 96 (395)
T ss_pred CCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc-CCCEE
Confidence 47899999999999999999999999999999999999999999999987432 2346788999999998875 56899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||+||++.|++++|.++ ++.+||.++++|||++...+..++.......+ |... .+...+++|
T Consensus 97 ~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--------~~~~~~~~d 168 (395)
T PRK03715 97 FFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--------GFPKAELND 168 (395)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCC--------CceeeCCch
Confidence 999999999999999999773 66889999999999999999887754322111 1111 234457889
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++++++.++ +++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|
T Consensus 169 ~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t 245 (395)
T PRK03715 169 IASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT 245 (395)
T ss_pred HHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceee
Confidence 999999886 369999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+||++++|+|+|+++++++++. +. +..+++||++||++|++++++|+.++++++++++++++++|+++|+++..++
T Consensus 246 ~gK~lg~G~p~~av~~~~~i~~-~~---~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~ 321 (395)
T PRK03715 246 LGKGIGGGVPLAALLAKAEVAV-FE---AGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEER 321 (395)
T ss_pred ehhhhhCCcceEEEEEcccccc-cc---CCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999863 32 3357889999999999999999999889999999999999999999987777
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC---CeEeccCCCcceEE--eCCCcHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE---GVYFAPSQFEAGFT--SLAHSSDDIQHTITA 466 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~ 466 (476)
+ +.++++.|+|+++++.++ ....+.+.+.+. |+++.+...+.+|+ ++.+|++|||+++++
T Consensus 322 ~-i~~vrG~Glm~~i~l~~~--------------~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~ 386 (395)
T PRK03715 322 G-LEGERGEGLLRALLLGKD--------------IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAM 386 (395)
T ss_pred C-cCeEEcceeEEEEEecCc--------------hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHH
Confidence 6 457899999999999642 112344444444 99997666566666 789999999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|+++++++
T Consensus 387 l~~~l~~~ 394 (395)
T PRK03715 387 LRSVLDKL 394 (395)
T ss_pred HHHHHHhh
Confidence 99999875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=481.93 Aligned_cols=369 Identities=26% Similarity=0.364 Sum_probs=320.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
+|+++.+++|+|+||.|||+||||.+++++++|||+||+|.+|+.+++++.. ..++.++...+|+++|++.. +.+++
T Consensus 21 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 99 (406)
T PRK12381 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_pred CCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 4889999999999999999999999999999999999999999999998743 23355777899999999987 56899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||+||++.|+|+||.++ ++.+|+.++++|||++...+..++.......+ .. ....+..+|++|
T Consensus 100 ~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~d 172 (406)
T PRK12381 100 FFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF---AP----LPPDIRHAAYND 172 (406)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC---CC----CCCCeeEeCCCC
Confidence 999999999999999999885 78899999999999999888877753322111 11 122457789999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++++++.++ +++++||+||+++++|.+.++++|+++|+++|++||++||+||+|+|| |+|.+++++++++.||++|
T Consensus 173 ~~~l~~~l~---~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t 249 (406)
T PRK12381 173 LNSASALID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLT 249 (406)
T ss_pred HHHHHHhcc---CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEE
Confidence 999999986 379999999999999999999999999999999999999999999999 9998888888999999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+|++++++++++.+. ...+.+||++||++++++.++|+.++++++++++++++++++++|+++..++
T Consensus 250 ~sK~l~gG~~ig~~~~~~~~~~~~~---~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~ 326 (406)
T PRK12381 250 TAKALGGGFPIGAMLTTEKCASVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARY 326 (406)
T ss_pred ehhhhhCCCceEEEEEcHHHHhhcC---CCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999886 3456789999999999999999999878899999999999999999987777
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+.+.++++.|+|+++++.++ .......+.+.|+++||++.+.+.+.+|+ ++.+|+++|++++++|++
T Consensus 327 ~~~~~vrg~Gl~~~~~l~~~-----------~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~ 395 (406)
T PRK12381 327 GLFSEIRGLGLLIGCVLNAE-----------YAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFAR 395 (406)
T ss_pred CCEEEEecCeEEEEEEecCc-----------hhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 77788999999999998532 01234678889999999998766566776 577999999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 396 ~l~~~ 400 (406)
T PRK12381 396 ACERF 400 (406)
T ss_pred HHHHH
Confidence 98765
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=478.30 Aligned_cols=362 Identities=24% Similarity=0.385 Sum_probs=315.9
Q ss_pred EEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeEEEeC
Q 011856 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVN 162 (476)
Q Consensus 85 ~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v~~~~ 162 (476)
+.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.... +.++...+|+++|++.. +.++|+|++
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~f~~ 79 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASS-FADRVFFCN 79 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcC-CCCeEEEeC
Confidence 468999999999999999999999999999999999999999999854332 45788899999999887 468999999
Q ss_pred CHHHHHHHHHHHHHhccC-------------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 163 SGTEACMGVLRLARAFTG-------------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 163 sGseA~~~al~~ar~~~~-------------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
||+||++.|+|+||.+++ +.+||.++++|||++.+++..++...... +..+.. ..+..+|
T Consensus 80 sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~--~~~~~~-----~~~~~~~ 152 (382)
T PLN00144 80 SGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRT--PFEPLM-----PGVTFVE 152 (382)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccc--cCCCCC-----CCeEEeC
Confidence 999999999999999875 46899999999999999998776532221 111111 2367789
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc
Q 011856 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (476)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD 308 (476)
+||+++|++.++. +++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|| |+|.+++++++++.||
T Consensus 153 ~~d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD 230 (382)
T PLN00144 153 YGNLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD 230 (382)
T ss_pred CCCHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC
Confidence 9999999999863 479999999999999999999999999999999999999999999999 9998888888999999
Q ss_pred hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 309 i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
++||||++++|+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++.++++++++++++.|+++.
T Consensus 231 i~t~sK~l~~G~pig~v~~~~~~~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~ 307 (382)
T PLN00144 231 IMTLAKPLAGGLPIGAVLVTEKVASAINP---GDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKL 307 (382)
T ss_pred EEEecccccCCcceEEEEEcHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998863 347789999999999999999999889999999999999999999988
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEE--eCCCcHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT--SLAHSSDDIQHTIT 465 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~--~~~~t~e~i~~~~~ 465 (476)
.+++.+.++++.|+|++++|... ...+.+.++++||++.+++. +.+++ ++++++++++++++
T Consensus 308 ~~~~~~~~vrg~G~~~~l~l~~~---------------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~ 372 (382)
T PLN00144 308 GGNPHVKEVRGVGLLVGIQLDVP---------------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVE 372 (382)
T ss_pred hhCCCceeeecCceEEEEEecCc---------------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHH
Confidence 88888889999999999999311 14688899999999998753 55655 57789999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
+|++++.++
T Consensus 373 ~l~~~l~~~ 381 (382)
T PLN00144 373 ILADCLPAL 381 (382)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=526.60 Aligned_cols=408 Identities=22% Similarity=0.278 Sum_probs=334.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
+++.+++++.+++++.+.... + ..|+++++++|+|+||.|||+||||.+++ ..+||+||+|.+|+.+|+.+
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~---~----~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~ 614 (972)
T PRK06149 544 PDAAALLARRDASFARVQKHY---Y----ADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSL 614 (972)
T ss_pred CCHHHHHHHHHHhhccchhhc---c----cCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHh
Confidence 467889999988887665322 1 24789999999999999999999999886 47999999999999999998
Q ss_pred cCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 131 GTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 131 ~~~~~-~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+...+ +..+...+|+++|++.+| +.++++|+|||+|||+.|+|+||.++++.+||.++++|||++.+++..++.....
T Consensus 615 l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~ 694 (972)
T PRK06149 615 LNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADN 694 (972)
T ss_pred ccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccc
Confidence 64332 567888999999999998 5789999999999999999999999999999999999999998887665431100
Q ss_pred CCC--CCCCCCCCCCCCceeeccCC--C-----HHHHHHHHh---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 209 LGL--PDSPGVPKGATYETLTAPFN--D-----VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 209 ~~~--~~~~~~~~~~~~~~~~~~~~--d-----~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
... +...++......+.+..+++ + .+++++.++ ++++++++||+||+++++|.+.++++||++|+++|
T Consensus 695 ~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc 774 (972)
T PRK06149 695 PQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAV 774 (972)
T ss_pred ccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHH
Confidence 000 00111111112233333442 2 345554443 34568999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCc-cccc-cchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHH
Q 011856 277 KENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~ 354 (476)
++||+++|+||||||| |+|. +++++++|+.|||+|+||++|+|+|+|++++++++++.+... ..+++|+++||++|
T Consensus 775 ~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~--~~~~sT~~gnP~~~ 852 (972)
T PRK06149 775 RARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAE--GYFFSSTGGSPVSC 852 (972)
T ss_pred HHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccC--CcccCCCCCCHHHH
Confidence 9999999999999999 9997 668999999999999999999999999999999999988642 24567889999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
++++++|++++++++.+++++++++|+++|+++..+++++.+++|.|+|++++|..+... ..++......+.+.|
T Consensus 853 aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~-----~~~~~~~~~~i~~~l 927 (972)
T PRK06149 853 RIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQT-----LEPATEETAAICDRL 927 (972)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCccc-----CCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999888999999999999999999643211 113445567889999
Q ss_pred HHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 435 LEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 435 ~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++||++.+.+. +.+++ ++++|++++|+++++|++++.+.
T Consensus 928 ~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~~ 971 (972)
T PRK06149 928 LELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTEG 971 (972)
T ss_pred HhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhh
Confidence 999999998764 34554 78999999999999999999764
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=482.96 Aligned_cols=371 Identities=25% Similarity=0.381 Sum_probs=311.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-C--CCCCCCHHHHHHHHHHHhhCC---C
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-T--SFGAPCLLENVLAEMVISAVP---S 154 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~--~~~~~~~~~~~la~~l~~~~~---~ 154 (476)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++. . .....++...+|+++|++.++ +
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG 100 (425)
T ss_pred CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence 489999999999999999999999999999999999999999999999862 2 123467888999999999753 2
Q ss_pred CC-eEEEe-CCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC--
Q 011856 155 IE-MVRFV-NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 230 (476)
Q Consensus 155 ~e-~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 230 (476)
.+ +++|+ |||+||++.|+|+||.++++.+||.+.++|||++.+++..++.......+ +.+ ..++..+|+
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~----~~~---~~~~~~~p~~~ 173 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGA----GVP---LNNVTRMPYDG 173 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCC----CCC---CCCeEEeCCCC
Confidence 33 67674 89999999999999999999999999999999999999887754322111 110 113444554
Q ss_pred ------CCHHHHHHHHhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh
Q 011856 231 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300 (476)
Q Consensus 231 ------~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~ 300 (476)
+|++++++++++++ +++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| |+|.++++
T Consensus 174 ~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~ 253 (425)
T PRK09264 174 YFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSF 253 (425)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHH
Confidence 47889999997532 469999999999999999999999999999999999999999999999 99999999
Q ss_pred hccCCCCchhhhhhhcCC-CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHH-HHhcCCCHHHHHHHHHH
Q 011856 301 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-KRLKEPGTYEYLNKITG 378 (476)
Q Consensus 301 ~~~g~~pDi~t~sK~lg~-G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~ 378 (476)
+++++.||++|+||++++ |+|+|++++++++ +.+. ...+.+||++||+++++++++| +.++++++.++++++++
T Consensus 254 ~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i-~~~~---~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~ 329 (425)
T PRK09264 254 ERAGITPDIVTLSKSISGYGLPMALVLIKPEL-DVWK---PGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGE 329 (425)
T ss_pred hhcCCCCCEEEeccccCCCccceEEEEEchhh-hccC---CCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999997 9999999999887 3443 3457789999999999999999 66666789999999999
Q ss_pred HHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eC
Q 011856 379 ELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SL 453 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~ 453 (476)
+++++|+++..+++. ..++++.|+|+++++.+ ......+.+.++++||++.+.+. ..+++ ++
T Consensus 330 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~-------------~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l 396 (425)
T PRK09264 330 LVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGD-------------GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPL 396 (425)
T ss_pred HHHHHHHHHHHhCCCceecceecccEEEEEecC-------------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCC
Confidence 999999998777763 47889999999999853 23346788999999999987653 34444 67
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 011856 454 AHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+|++++++++++|+++++++.
T Consensus 397 ~~t~~ei~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 397 TIDEEELEEGLDILEEAVAEVL 418 (425)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987753
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=481.92 Aligned_cols=393 Identities=26% Similarity=0.384 Sum_probs=331.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.+++++.+..+++...+. .+.|+++.+++|+|+||.||++||||.+++++.++||+||+|++|+++|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~----------~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~ 106 (474)
T PLN02624 37 DSSAHLIELEEKYSAHNY----------HPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEK 106 (474)
T ss_pred cchHHHHHHHHHhhcccc----------CCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence 344677777766654322 1248999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc--------CCceEEEEeCCCCCCchhHHh
Q 011856 131 GTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 131 ~~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~~ 200 (476)
.... .+.++...+|+++|++.+ +.++++|++||+||++.|+|+||.++ ++..||.+.++|||++.+++.
T Consensus 107 ~~~~~~~~~~~~~~~la~~L~~~~-~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s 185 (474)
T PLN02624 107 LTLSSRAFYNDKFPEFAEYLTSMF-GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAIS 185 (474)
T ss_pred cCCcccccCCHHHHHHHHHHHhhc-CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhh
Confidence 5432 256788899999999988 57899999999999999999999863 345799999999999999998
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
.++.......+ .+. ...+..+||+|++.++++++.+++++++||+||+++++|.+.|+++||++|+++|++||
T Consensus 186 ~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g 258 (474)
T PLN02624 186 MSCDNEATRGF--GPL-----LPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN 258 (474)
T ss_pred cCCCccccccC--CCC-----CCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 77653222111 011 12356779999999999998766789999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHH
Q 011856 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~ 358 (476)
++||+||+|+|| |+|.+++.+++++.||++++||++++| +|+|++++++++++.+. +..+++|+++||++++++.
T Consensus 259 illI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~---~~~~~~T~~g~pl~~aaa~ 335 (474)
T PLN02624 259 VLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIK---PGEHGSTFGGNPLASAVAM 335 (474)
T ss_pred CEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhc---cCCcCCCCCCCHHHHHHHH
Confidence 999999999999 999888888899999999999999976 89999999999988876 3457889999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
++|+.++++++.+++.+++++++++|+++..+++ .+.++++.|+|+++++..+. .+.....++++.|+++
T Consensus 336 aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~---------~~~~~a~~~~~~L~e~ 406 (474)
T PLN02624 336 AALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK---------LGPVSAYDVCLKLKER 406 (474)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC---------cChHHHHHHHHHHHhC
Confidence 9999998888999999999999999999877776 46678999999999885321 0123346788899999
Q ss_pred CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 438 Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
||++.+.+...+|+ ++.+|+++|++++++|++++..
T Consensus 407 GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 407 GLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred CeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 99999887666777 5799999999999999998864
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=480.66 Aligned_cols=375 Identities=21% Similarity=0.284 Sum_probs=307.4
Q ss_pred eEEEeecCCEEEEc-CCCEEEecccChhhccCCCCcHHHHH--HHHHHHHhcC-----CCCCCCHHHHHHHHHHHhhC-C
Q 011856 83 IVFDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVLA--ALGETMKKGT-----SFGAPCLLENVLAEMVISAV-P 153 (476)
Q Consensus 83 ~~~~~~~G~~~~d~-dG~~~iD~~~~~~~~~lG~~~p~v~~--a~~~~l~~~~-----~~~~~~~~~~~la~~l~~~~-~ 153 (476)
+++.+++|+|+||. |||+||||.++++++++||+||+|.+ |+.+|+++.. ...+.++...+|+++|++.. |
T Consensus 28 ~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p 107 (443)
T PRK08297 28 LDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD 107 (443)
T ss_pred eEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC
Confidence 44899999999995 99999999999999999999999999 9999998632 22457788899999999987 4
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHHHhcc------------CCceEEEEeCCCCCCchhHHhhcCCCCc-cCCCCCC--CCC
Q 011856 154 -SIEMVRFVNSGTEACMGVLRLARAFT------------GRERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDS--PGV 217 (476)
Q Consensus 154 -~~e~v~~~~sGseA~~~al~~ar~~~------------~~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~--~~~ 217 (476)
+.++|+|+|||+||++.|+|+||.++ ++.+||.+.++|||++++++..++.... ....+.. ..+
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 187 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcccc
Confidence 57899999999999999999998773 2578999999999999999988764221 1111110 001
Q ss_pred CCCC------C---CceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 218 PKGA------T---YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 218 ~~~~------~---~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
+... . .+...+++++++++++++.++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV 267 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEV 267 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 0000 0 001122334567788888877789999999999999999999999999999999999999999999
Q ss_pred ccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 289 ~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
|||| |+|.+|+++++|+.||++|+||+++ +|++++.+++.+.... .....+++||++||++|++++++|+.++
T Consensus 268 ~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 343 (443)
T PRK08297 268 QTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE 343 (443)
T ss_pred hhccCccchHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999973 5666666665433211 1123588999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
++++.+++++++++++++|+++..+++.+. ++++.|+|++++|.+ ......+.+.|+++||++.+.
T Consensus 344 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~Gvl~~~~ 410 (443)
T PRK08297 344 EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT-------------TADRDEVIRRLWEEGVLVLPC 410 (443)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC-------------HHHHHHHHHHHHHCCEEEecC
Confidence 899999999999999999999988888655 899999999999953 123467888999999999887
Q ss_pred CCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 445 QFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 445 ~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+...+++ ++.+|++|+|+++++|++++.++
T Consensus 411 ~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 411 GERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 6555665 79999999999999999999875
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=464.29 Aligned_cols=379 Identities=25% Similarity=0.351 Sum_probs=319.1
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
+++++.++.+++..... .+.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~ 72 (396)
T PRK04073 3 KSEKIIELTNHYGAHNY----------HPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKV 72 (396)
T ss_pred hHHHHHHHHHHhccccc----------CCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhc
Confidence 45677777766654321 12489999999999999999999999999999999999999999999999985
Q ss_pred CCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhh
Q 011856 132 TSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 132 ~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
... ..+++...+|+++|++.. +.++++|++||+||++.|+++||.+ +++++||.++++|||++..++..
T Consensus 73 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~ 151 (396)
T PRK04073 73 TLTSRAFHSDQLGPWYEKVAKLT-GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSL 151 (396)
T ss_pred cccccccCCHHHHHHHHHHHhcC-CCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhh
Confidence 322 346778899999999987 4589999999999999999999987 57789999999999999988887
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 011856 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (476)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (476)
++.......+ .+. ...+..++++|++++++.++. ++++|++||+++++|.+.++++||++|+++|++||+
T Consensus 152 ~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~l~~~i~~---~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 221 (396)
T PRK04073 152 SSEEEYKRGF--GPM-----LPGIKKIPYGDLEALKAAITP---NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENV 221 (396)
T ss_pred cCCcccccCC--CCC-----CCCceEeCCCCHHHHHHhccc---CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 7643211110 011 123567889999999998863 689999999999999999999999999999999999
Q ss_pred EEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHH
Q 011856 282 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (476)
Q Consensus 282 llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~a 359 (476)
+||+||+|+|| |+|.+++.+++++.||+++|||++++| +|+|++++++++++.+.. ..+..|+++||++++++++
T Consensus 222 lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~---~~~~~t~~~~~~~~aaa~a 298 (396)
T PRK04073 222 LFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTP---GSHGSTFGGNPLACAVSIA 298 (396)
T ss_pred EEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHH
Confidence 99999999999 888877778889999999999999965 999999999999998863 3467899999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe
Q 011856 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (476)
Q Consensus 360 al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (476)
+|+.++++++.++++++++++.+.|+++. .+.+..+++.|+|+++++.. ...++.+.|+++||
T Consensus 299 aL~~~~~~~l~~~~~~~~~~l~~~L~~l~--~~~i~~~~~~g~~~~~~~~~---------------~~~~~~~~l~~~Gv 361 (396)
T PRK04073 299 ALEVLEEEKLPERSLELGEYFKEQLKEID--NPMIKEVRGRGLFIGVELNE---------------PARPYCEALKEEGL 361 (396)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhc--CCcccceecceEEEEEEecc---------------hHHHHHHHHHHCCe
Confidence 99998778899999999999999999863 34456778899999998742 12578888999999
Q ss_pred EeccCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 440 YFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 440 ~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
++.+.+...+|++ +.+|++++++++++|++++
T Consensus 362 ~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 362 LCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 9987655567774 7899999999999999875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=461.56 Aligned_cols=365 Identities=27% Similarity=0.391 Sum_probs=316.6
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.|||+||||.++++++++||+||+|.+|+.+|++++...+ +.++...+++++|++.. +.+++
T Consensus 13 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 91 (389)
T PRK01278 13 ADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENS-FADKV 91 (389)
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhC-CCCEE
Confidence 4899999999999999999999999999999999999999999999998753322 45788899999999987 56899
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||+||++.|++++|.+ +++++||.++++|||++..++..++.......+. ....++..++++|
T Consensus 92 ~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 164 (389)
T PRK01278 92 FFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG-------PLVPGFDQVPFGD 164 (389)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC-------CCCCCceEeCCCC
Confidence 99999999999999999887 5677999999999999999988776533221110 0112356678899
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++++++.++. ++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| |+|.+++++++++.||++|
T Consensus 165 ~~~l~~~l~~---~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t 241 (389)
T PRK01278 165 IEALKAAITP---NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMA 241 (389)
T ss_pred HHHHHHhhCC---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEE
Confidence 9999999963 79999999999999988899999999999999999999999999999 8888777788899999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+||+++++++++.+. ...+..|+++||+++++++++|+.++++++.+++++++++++++|+++...+
T Consensus 242 ~sK~l~~G~~ig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~ 318 (389)
T PRK01278 242 VAKGIGGGFPLGACLATEEAAKGMT---PGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRF 318 (389)
T ss_pred EehhccCCcceEEEEEcHHHHhccC---CCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998876 3457789999999999999999998777889999999999999999987666
Q ss_pred C-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 392 G-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 392 ~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
+ ++.++++.|.++++++..+ ..++.+.|+++||++.|++.+.+|++ +.++++++++++++|+
T Consensus 319 ~~~~~~v~g~G~~~~i~~~~~---------------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~ 383 (389)
T PRK01278 319 PDVIEEVRGKGLLLGLKCVVP---------------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLE 383 (389)
T ss_pred CCceeeEecccEEEEEEEecC---------------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHH
Confidence 6 6778899999999887421 25788999999999999876777874 6799999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
++++++
T Consensus 384 ~~l~~~ 389 (389)
T PRK01278 384 RAAESL 389 (389)
T ss_pred HHHHhC
Confidence 998753
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=456.93 Aligned_cols=370 Identities=28% Similarity=0.399 Sum_probs=317.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.||++||||.+++++++|||+||+|.+++.+++++....+ +.++...+|+++|++.. +.+++
T Consensus 22 ~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 100 (403)
T PRK05093 22 AEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-FAERV 100 (403)
T ss_pred CCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-CCCEE
Confidence 4899999999999999999999999999999999999999999999998743222 35667789999999987 56899
Q ss_pred EEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||+|||+.|++++|.++ ++++||.++++|||++...+..++..... .++.. ...++..+++||
T Consensus 101 ~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~d 173 (403)
T PRK05093 101 FFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS------DGFGP-KPADITHVPFND 173 (403)
T ss_pred EEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh------hcCCC-CCCCcEEeCCCC
Confidence 999999999999999999884 67899999999999998777766542111 11111 122477889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++.+++.+.+ ++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|.+++.+++++.||+.+
T Consensus 174 ~~~l~~~l~~---~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s 250 (403)
T PRK05093 174 LAAVKAVIDD---HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILT 250 (403)
T ss_pred HHHHHHHhcC---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEE
Confidence 9999999863 69999999999999999999999999999999999999999999999 8887777778899999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+||+++++++++.+.. ..+..|++++|+.|+++.++|+.+.++++.++++++++++++.|+++..++
T Consensus 251 ~sK~l~~G~rig~vv~~~~i~~~l~~---~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (403)
T PRK05093 251 SAKALGGGFPIGAMLTTAEIASHFKV---GTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKY 327 (403)
T ss_pred ecccccCCcceEEEEEcHHHHhhcCC---CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998863 346678899999999999999998778899999999999999999987667
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+....+++.|.++++++.... .....+++..|+++||++.+.+.+.+|+ ++.+++++|++++++|++
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~-----------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY-----------KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc-----------hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 777788899999999985310 1134678899999999999876667777 688899999999999999
Q ss_pred HHHHhh
Q 011856 470 VKMRFL 475 (476)
Q Consensus 470 ~~~~~~ 475 (476)
++.++.
T Consensus 397 ~l~~~~ 402 (403)
T PRK05093 397 AVAKVV 402 (403)
T ss_pred HHHHhc
Confidence 997753
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=461.99 Aligned_cols=372 Identities=21% Similarity=0.284 Sum_probs=300.1
Q ss_pred CeE--EEeecCCEEEEc-CCCEEEecccChhhccCCCCcHHHH--HHHHHHHHhcC----C-CCCCCHHHHHHHHHHHhh
Q 011856 82 PIV--FDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVL--AALGETMKKGT----S-FGAPCLLENVLAEMVISA 151 (476)
Q Consensus 82 p~~--~~~~~G~~~~d~-dG~~~iD~~~~~~~~~lG~~~p~v~--~a~~~~l~~~~----~-~~~~~~~~~~la~~l~~~ 151 (476)
|++ +.+++|+|+||. |||+||||.+++++.++||+||+|. +|+.+|++++. . .....+...+++++|++.
T Consensus 18 p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 97 (431)
T TIGR03251 18 DLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARV 97 (431)
T ss_pred ceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHh
Confidence 555 599999999996 9999999999999999999999999 99999998752 1 134567778899999888
Q ss_pred C-C-CCCeEEEeCCHHHHHHHHHHHHHhccC------------CceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCCCC
Q 011856 152 V-P-SIEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPG 216 (476)
Q Consensus 152 ~-~-~~e~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~~ 216 (476)
. + +.++++|+|||+||++.|+|+||.+++ +.+||.++++|||++++++..++....... .|....
T Consensus 98 ~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 177 (431)
T TIGR03251 98 LGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDW 177 (431)
T ss_pred cCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCC
Confidence 5 3 578999999999999999999998862 468999999999999999988775322111 111100
Q ss_pred --C--CCC---CC----CceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 217 --V--PKG---AT----YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 217 --~--~~~---~~----~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
+ +.. .. .....+.+++++++++.+.++++++++||+||+++++|.+.++++||++|+++|++||++||+
T Consensus 178 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~ 257 (431)
T TIGR03251 178 PRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIF 257 (431)
T ss_pred ccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 000 00 001111234567778888777789999999999999999999999999999999999999999
Q ss_pred eccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhc--CCCCccccCCCCCcHHHHHHHHHHHH
Q 011856 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLK 362 (476)
Q Consensus 286 DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~--~~~~~~~~~t~~~~~~~~aaa~aal~ 362 (476)
||||+|| |+|.+|+++++|+.||++|+||++ ++++++..+++.+... ......+.+||++||++|++++++|+
T Consensus 258 DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 333 (431)
T TIGR03251 258 DEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILE 333 (431)
T ss_pred ecchhccCccchHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHH
Confidence 9999999 999999999999999999999986 4556655555433221 01123478899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEe
Q 011856 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 441 (476)
.++++++.+++++++++++++|+++..+++ ++.++++.|+|+++++.+ ......+.+.|+++||++
T Consensus 334 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~Gvl~ 400 (431)
T TIGR03251 334 IIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS-------------TADRDEVIRQLYREGVLL 400 (431)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC-------------HHHHHHHHHHHHhCCeEE
Confidence 998888999999999999999999877787 888999999999999842 123457889999999999
Q ss_pred ccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
.+.+...+++ ++.+|++|||+++++|+++
T Consensus 401 ~~~g~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 401 LGCGERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred ecCCCCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 8876555664 7899999999999999863
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-59 Score=454.38 Aligned_cols=316 Identities=36% Similarity=0.584 Sum_probs=276.8
Q ss_pred EEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011856 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVR 159 (476)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~e~v~ 159 (476)
++++++|+|+||.|||+||||.++++++++||+||+|.+++.+++.++.. ..+.++...+|+++|.+.+| +.++++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~ 80 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF 80 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence 57899999999999999999999999999999999999999999998644 34678889999999999998 688999
Q ss_pred EeCCHHHHHHHHHHHHH------hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 160 FVNSGTEACMGVLRLAR------AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar------~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
|++||+||++.|+|+|| ..+++.+|+.+.++|||++.+++..++........ ......+..+|++++
T Consensus 81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~-------~~~~~~~~~~p~~~~ 153 (339)
T PF00202_consen 81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGF-------GPLYPGVVFVPFPDP 153 (339)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTT-------CSSSTTEEEEETTCH
T ss_pred eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccc-------cccccccccccCCcc
Confidence 99999999999999999 78999999999999999999999887664333211 111223577888876
Q ss_pred HH----------HHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhh
Q 011856 234 SA----------LENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 301 (476)
Q Consensus 234 ~~----------le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~ 301 (476)
.. +++.+. ...+++++||+||+++++|.+.++++||++|+++|++||++||+|||+||| |+|.+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~ 233 (339)
T PF00202_consen 154 AADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASE 233 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHH
T ss_pred chhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcccee
Confidence 66 444332 234689999999999999999999999999999999999999999999999 999999999
Q ss_pred ccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 302 ~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
++|+.||++|+||++++|+|+|++++++++++.+.. ..+.+||++||++|++++++|+.++++++.+++++++++|+
T Consensus 234 ~~gv~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~---~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~ 310 (339)
T PF00202_consen 234 HYGVDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQP---GSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLR 310 (339)
T ss_dssp HHTSSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCT---TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccccCcccccccchhhhhhcccccccchhhccccc---cccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998863 33889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
++|+++..+++.+.++++.|+|++++|.
T Consensus 311 ~~L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 311 EGLRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 9999998888999999999999999985
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-58 Score=458.58 Aligned_cols=377 Identities=22% Similarity=0.296 Sum_probs=312.8
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~-~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
++.+.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++++++... + +.+++...+++++|++.+| +.++
T Consensus 28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 107 (427)
T TIGR00508 28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDC 107 (427)
T ss_pred CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCE
Confidence 5678999999999999999999999999999999999999999999998532 2 3467888999999999987 4689
Q ss_pred EEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCC-ceeec
Q 011856 158 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATY-ETLTA 228 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~-~~~~~ 228 (476)
++|++||+||++.|+|+||.++ ++.+||.++++|||++..++..++... ....+ +..++....... ..+..
T Consensus 108 v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 187 (427)
T TIGR00508 108 VFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDE 187 (427)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccc
Confidence 9999999999999999999874 578999999999999999888766421 11000 101111000000 01111
Q ss_pred cC--CCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccC
Q 011856 229 PF--NDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 304 (476)
Q Consensus 229 ~~--~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g 304 (476)
++ +|+++++++++++++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+.++++
T Consensus 188 ~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~ 267 (427)
T TIGR00508 188 EWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAG 267 (427)
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcC
Confidence 22 3678889999876678999999997 8889999999999999999999999999999999999 999998999999
Q ss_pred CCCchhhhhhhcCCCC-cEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 305 VTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 305 ~~pDi~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
+.||++|+||+++||+ |++++++++++++.+... ....+.+||++||+++++++++|+.++++++.+++++++++|+
T Consensus 268 v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 347 (427)
T TIGR00508 268 VVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK 347 (427)
T ss_pred CCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999995 999999999999988642 1345778999999999999999999988899999999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~ 459 (476)
++|+++.. ++.+.++++.|+|+++++.++. ....+...|+++||++.+.+ +.+++ ++.+|++|
T Consensus 348 ~~L~~l~~-~~~i~~vrg~G~~~~i~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~ 412 (427)
T TIGR00508 348 RELSPLRK-NPVVKDVRVLGAIGVVEMYKPV-------------NVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQ 412 (427)
T ss_pred HHHHHhhc-CCCEEeEeccccEEEEEECCcc-------------CHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHH
Confidence 99999753 5556789999999999995321 12568889999999998764 34555 67899999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
||+++++|++++++
T Consensus 413 id~~~~~l~~~l~~ 426 (427)
T TIGR00508 413 LQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=449.41 Aligned_cols=401 Identities=27% Similarity=0.414 Sum_probs=328.4
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
.++++++++++.+.|+..+ +|+++.+++|+|+||+||++||||.+++++.++||+||+|.+++.+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~ 74 (425)
T PRK08088 4 NKSLMQRRSAAVPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS 74 (425)
T ss_pred HHHHHHHHHHhhccccCCC---------CCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC
Confidence 4567777777777765432 3899999999999999999999999999999999999999999999999853
Q ss_pred CCC---CCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-
Q 011856 133 SFG---APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (476)
Q Consensus 133 ~~~---~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (476)
+.. ..++...+|++++++..| + .++++|++||+||++.|+++||.++++.+||.++++|||++..++..++...
T Consensus 75 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~ 154 (425)
T PRK08088 75 HTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNP 154 (425)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCc
Confidence 221 236677899999999886 3 3699999999999999999999999999999999999999999888765311
Q ss_pred ccCCCC-CCCCCCCCCCCceeeccCCC------HHHHHHHHh--cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 207 ATLGLP-DSPGVPKGATYETLTAPFND------VSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 207 ~~~~~~-~~~~~~~~~~~~~~~~~~~d------~~~le~~l~--~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
....+. ...++.. ..+..++++ ++.|+++++ .+++++++||+||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~ 230 (425)
T PRK08088 155 YSAGMGLMPGHVYR----ALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCD 230 (425)
T ss_pred cccCCCCCCCCcEE----cCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence 111110 0011100 001111221 667888886 335689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHH
Q 011856 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
+||+++|+||+|+|| ++|.+++++++++.||+.+|||++++|+|+||+++++++++.+.. ..+.+|+++||+.+++
T Consensus 231 ~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~~a 307 (425)
T PRK08088 231 EHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAP---GGLGGTYAGNPIACAA 307 (425)
T ss_pred HcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCC---CCCCCCCCcCHHHHHH
Confidence 999999999999999 888777778889999999999999999999999999999998863 3467799999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
+.++|+.++.+++.+++++.++++++.|.++..+++.+..+++.|+|+|+++.++.. ...|+......+.+.|++
T Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~-----~~~p~~~~~~~l~~~~~~ 382 (425)
T PRK08088 308 ALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HSKPNAKLTAQIVARARD 382 (425)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCC-----CCCCCHHHHHHHHHHHHh
Confidence 999999988789999999999999999999988888778899999999999964321 122344556789999999
Q ss_pred CCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 437 EGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 437 ~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+||++.+.+. +.+++ ++.+++++|++++++|++++.++
T Consensus 383 ~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 383 KGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 9998876542 45565 45689999999999999998754
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=469.65 Aligned_cols=412 Identities=19% Similarity=0.250 Sum_probs=321.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCC-CCeEEEeecCC----EEEEcCCC----EEEecccChhhccCC-CCcH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGS----HMWDIDGN----EYIDYVGSWGPAIIG-HADD 118 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~p~~~~~~~G~----~~~d~dG~----~~iD~~~~~~~~~lG-~~~p 118 (476)
...+++++.+++++++.... .....+.. .|.+|++++|. |++|.||+ +|||+.++|++.++| |+||
T Consensus 310 r~~~~~~~~~~a~~~iw~Pf----tq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p 385 (817)
T PLN02974 310 RLQRLQSMPKEAGEVLWWPF----TQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQP 385 (817)
T ss_pred HhHHHHHHHHHHhhhccCCc----ccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCH
Confidence 35677888999998875422 22222221 37899999998 99999998 999999999999999 5899
Q ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHH-hcc-------------
Q 011856 119 QVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR-AFT------------- 179 (476)
Q Consensus 119 ~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar-~~~------------- 179 (476)
+|.+|+.+|+.+..+. ++.++...+|+++|.+..+ + .++|+|++||+||+|.|||+|| .+.
T Consensus 386 ~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~ 465 (817)
T PLN02974 386 ELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEK 465 (817)
T ss_pred HHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 9999999999985432 3578999999999999654 3 6899999999999999999995 352
Q ss_pred -----CCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CC----CCCC--CCCC-CC--ceeeccCC------------
Q 011856 180 -----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PD----SPGV--PKGA-TY--ETLTAPFN------------ 231 (476)
Q Consensus 180 -----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~----~~~~--~~~~-~~--~~~~~~~~------------ 231 (476)
++.+||.++++|||.+.+++..++.......+ |. ...+ |... .. ....+|++
T Consensus 466 ~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 545 (817)
T PLN02974 466 RGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTW 545 (817)
T ss_pred ccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccc
Confidence 36789999999999999999988643221110 10 0000 0000 00 00011111
Q ss_pred -------------------CHHHHHHHHhc-----CCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 232 -------------------DVSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 232 -------------------d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
..+.+++.|++ .++++++||+||+ ++.+|.+.|+++|+++|+++|++||++||+|
T Consensus 546 ~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~D 625 (817)
T PLN02974 546 ESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFD 625 (817)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 02567777753 3568999999995 8999999999999999999999999999999
Q ss_pred ccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC---CCccccCCCCCcHHHHHHHHHHH
Q 011856 287 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTL 361 (476)
Q Consensus 287 Ev~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal 361 (476)
||+||| |+|.+|+++++|+.|||+|++|+++|| +|+|++++++++++.+... ..+.|++||++||++|++|+++|
T Consensus 626 EV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 626 EVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred ecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHH
Confidence 999999 999999999999999999999999999 5999999999999988521 24568999999999999999999
Q ss_pred HHhcCCCHHHH----HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc-CchhhcccchHHHHHHHHHHH-
Q 011856 362 KRLKEPGTYEY----LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML- 435 (476)
Q Consensus 362 ~~~~~~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~- 435 (476)
+.++++++.++ ..++++++.+.|.+...+++.+.++++.|+|++++|.++... .+ .......+.+.++
T Consensus 706 ~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~------~~~~a~~v~~~~~~ 779 (817)
T PLN02974 706 QWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGY------SSLYARSVVRRLRR 779 (817)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCccccc------chHHHHHHHHHHHH
Confidence 99988755545 455556666666444456889999999999999999754311 11 2234567788888
Q ss_pred HCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 436 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 436 ~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
++||++++.+ +.+++ ++.+++++++++++++++.+
T Consensus 780 ~~Gl~~r~~G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 780 EDGIYARPLG-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred hCCEEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999875 34443 78999999999999999875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=445.58 Aligned_cols=364 Identities=28% Similarity=0.393 Sum_probs=313.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCC--CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS--IE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~--~e 156 (476)
.|+++.+++|+++||.|||+||||.+++++++|||+||+|.+++.+++++... ..+++....+|++++++.++. .+
T Consensus 25 ~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 104 (398)
T PRK03244 25 PPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGG 104 (398)
T ss_pred CCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 38999999999999999999999999999999999999999999999997422 235677778999999999862 47
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
+++|++||+||++.|+++++. +++++||.++++|||++..++...+.......+ .....++..+|++|++++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~l 176 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF-------EPLPGGVEHVPYGDVDAL 176 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCC-------CCCCCCceEeCCCCHHHH
Confidence 999999999999999999877 677899999999999999888776643211111 011234677889999999
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~ 315 (476)
++.++ +++++|++||+++++|.+.|+++|+++|+++|++||++||+||+|+|| |+|.+++++++++.||++||||+
T Consensus 177 ~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~ 253 (398)
T PRK03244 177 AAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKG 253 (398)
T ss_pred HHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchh
Confidence 99885 378999999999999999999999999999999999999999999999 98887777888999999999999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
+++|+|+|++++++++++.+. ...+.+||++||++|+++.++|+.++++++.++++++++++++.|+++ .++.+.
T Consensus 254 l~~G~~ig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~ 328 (398)
T PRK03244 254 LGGGLPIGACLAFGPAADLLT---PGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL--GHPLVD 328 (398)
T ss_pred hhCCcccEEEEEcHHHHhhcc---CCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--CCCcee
Confidence 999999999999999999886 344678999999999999999998888889999999999999999886 356667
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+++.|+++++++..+ ...++.+.|+++||++.+.+.+.+|+ ++.+|++|+++++++|++++.+
T Consensus 329 ~v~g~g~~~~i~~~~~--------------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 329 HVRGRGLLLGIVLTAP--------------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred eEeeccEEEEEEEecc--------------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 7889999999998421 23578899999999998876667776 4778999999999999999976
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
+
T Consensus 395 ~ 395 (398)
T PRK03244 395 A 395 (398)
T ss_pred c
Confidence 4
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-56 Score=441.09 Aligned_cols=362 Identities=29% Similarity=0.406 Sum_probs=311.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
+|+++.+++|+|+||+|||+||||.+++++.+|||+||+|.+|+.+++++... .....+++.+|++++.+..+ .+++
T Consensus 11 ~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~ 89 (377)
T PRK02936 11 FPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA-GDLV 89 (377)
T ss_pred CCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC-CCEE
Confidence 48899999999999999999999999999999999999999999999987422 22457888999999988764 5799
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
+|++||++|++.|++++|.++++++||.++++|||++...+..++.......+ . ....++..+|++|++++++
T Consensus 90 ~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~d~~~l~~ 162 (377)
T PRK02936 90 FFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGF------G-PLLPGFTHVPFNDIKALKE 162 (377)
T ss_pred EEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccC------C-CCCCCceEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999998888766542211111 0 1112456789999999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 317 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg 317 (476)
.+.. ++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|.++..+++++.||++||||+++
T Consensus 163 ~~~~---~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~ 239 (377)
T PRK02936 163 VMNE---EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLG 239 (377)
T ss_pred hccC---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccccc
Confidence 8863 68999999999999999999999999999999999999999999999 8887777778899999999999999
Q ss_pred CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+|+|+|++++++++++.+.. ..+..|+++||++++++.++|+.+..++++++++++++++++.|++...+++.+..+
T Consensus 240 ~G~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 316 (377)
T PRK02936 240 NGIPVGAMIGKKELGTAFGP---GSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNI 316 (377)
T ss_pred CCCccEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE
Confidence 99999999999999998863 346678899999999999999998767899999999999999999876667777778
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
++.|.++++++.++ ...+.+.|.++||++.+.+.+.+|++ +.++++++++++++|++++
T Consensus 317 ~~~g~~~~i~~~~~---------------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 317 RGKGLMIGIECTEE---------------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred eecceEEEEEecch---------------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 88999999998531 35678889999999998876777875 7899999999999998763
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-55 Score=439.88 Aligned_cols=394 Identities=35% Similarity=0.533 Sum_probs=331.7
Q ss_pred HHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC
Q 011856 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 136 (476)
Q Consensus 57 ~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~ 136 (476)
+++++++++.|++ ..++|+++++++|+++||.||++||||.++++++++||+||+|.+++.+++.++..+..
T Consensus 2 ~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 73 (413)
T cd00610 2 FERDRKVLWHGYT--------VRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSL 73 (413)
T ss_pred cchhhhhcccccc--------CCCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccC
Confidence 4566778888764 11358999999999999999999999999999999999999999999999987654433
Q ss_pred ---CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 137 ---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 137 ---~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
.++...++++++++.++ +.++++|++||++|++.++++++.++++++|++++++|||++...+..++....
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~----- 148 (413)
T cd00610 74 GFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKY----- 148 (413)
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccc-----
Confidence 47889999999999997 689999999999999999999998899999999999999999988877654211
Q ss_pred CCCCCCCCCCCceeeccCC-----------CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 011856 213 DSPGVPKGATYETLTAPFN-----------DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~-----------d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (476)
.+.......++..+|++ |+++|++.++++++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~ 226 (413)
T cd00610 149 --RGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGI 226 (413)
T ss_pred --cccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 11111222356778887 89999999987666899999999999999999999999999999999999
Q ss_pred EEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHH
Q 011856 282 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360 (476)
Q Consensus 282 llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 360 (476)
+||+||+|+|| +.|..+..+++++.||++|+||++++|+|+|++++++++++.+. .....+.+|+++|+++++++.++
T Consensus 227 ~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~a~~a~ 305 (413)
T cd00610 227 LLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFP-AGPGLHGGTFGGNPLACAAALAV 305 (413)
T ss_pred EEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCccccEEEEEcHHHHHhhc-cCCCCCCCCCCcCHHHHHHHHHH
Confidence 99999999999 88877778888999999999999999999999999999999861 12455678999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
|+.++++++.+++++++++++++|+++...++.+..+++.|.++++.+.++...+ .++......+.+.|+++||+
T Consensus 306 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gv~ 380 (413)
T cd00610 306 LEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATK-----PPDKELAAKIIKAALERGLL 380 (413)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcC-----CcchHHHHHHHHHHHHCCeE
Confidence 9998878899999999999999999887655667777889999999986532111 12334557788999999999
Q ss_pred eccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 441 FAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 441 ~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
+.+++...+++ ++.+|++++++++++|++++
T Consensus 381 v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 381 LRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 99875455665 67899999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-55 Score=436.65 Aligned_cols=368 Identities=24% Similarity=0.365 Sum_probs=312.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.||++||||.+++++..+||+||+|.+|+.+++++..... +..+...+|+++|++.+ +.+++
T Consensus 19 ~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 97 (401)
T TIGR01885 19 LPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF-GYDKV 97 (401)
T ss_pred CCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc-CCCEE
Confidence 4788999999999999999999999999999999999999999999998743222 35678899999999988 46899
Q ss_pred EEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||++||+.|++++|.+ +++..|+.++++|||++...+..++.......+ + .....+..++|
T Consensus 98 ~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~ 170 (401)
T TIGR01885 98 LPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNF----G---PYVPGFKKIPY 170 (401)
T ss_pred EEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccccc----C---CCCCCceEeCC
Confidence 99999999999999999876 357889999999999998888776542211100 0 00123577899
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi 309 (476)
+|+++||++++++++++++|++||+++++|.+.|+++||++|+++|++||+++|+||+|+|| ++|.+++.+++++.||+
T Consensus 171 ~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di 250 (401)
T TIGR01885 171 NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDI 250 (401)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCE
Confidence 99999999998666689999999999999999999999999999999999999999999999 98887777788999999
Q ss_pred hhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 310 ~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+++||++++| +|+|++++++++++.+.. ..+..|++++|++++++.++|+.++++++.++++++++++++.|+++.
T Consensus 251 ~~~gK~l~~g~~~ig~v~~~~~i~~~~~~---~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~ 327 (401)
T TIGR01885 251 VLLGKALSGGVYPVSAVLADDDVMLTIKP---GEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP 327 (401)
T ss_pred EEeeccccCCCCCcEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999976 899999999999988763 335678899999999999999999877889999999999999999873
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 466 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~ 466 (476)
.+++.++++.|.|+.+++..+.. .....++.+.|.++||++.+.+...+|+ ++.+|+++|++++++
T Consensus 328 --~~~~~~~~g~g~~~~i~~~~~~~----------~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~ 395 (401)
T TIGR01885 328 --KPIITEVRGRGLLNAIVIDESKT----------GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEI 395 (401)
T ss_pred --CCceeEEeecCeeEEEEeccCcc----------hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHH
Confidence 35667788999999998853210 1234678899999999998877667777 468999999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 396 l~~~l 400 (401)
T TIGR01885 396 IKKVI 400 (401)
T ss_pred HHHHh
Confidence 99876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=430.35 Aligned_cols=364 Identities=24% Similarity=0.333 Sum_probs=306.9
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||+||++||||.+++++.++||+||+|.+|+.+++++.... ...++...+|+++++++++ .+++
T Consensus 23 ~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ 101 (401)
T PRK00854 23 LDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTG-SHKV 101 (401)
T ss_pred CCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC-CCEE
Confidence 478999999999999999999999999999999999999999999999985332 2456788899999999884 5799
Q ss_pred EEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||++|++.|++++|.+ +++++||+++.+|||++..++..++.......+ .....++..+||
T Consensus 102 ~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 174 (401)
T PRK00854 102 LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGF-------GPFTPGFRVVPF 174 (401)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccC-------CCCCCCeEEeCC
Confidence 99999999999999999876 356799999999999988777655432111100 011124677899
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi 309 (476)
+|++++++.+.+ ++++|++||+++++|.+.|+++||++|+++|++||++||+||+|+|| ++|.++..+++++.||+
T Consensus 175 ~d~~~le~~i~~---~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~ 251 (401)
T PRK00854 175 GDAEALEAAITP---NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADV 251 (401)
T ss_pred CCHHHHHHHhCC---CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCE
Confidence 999999999863 68999999999999999999999999999999999999999999999 88876666788999999
Q ss_pred hhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 310 ~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+++||++++| +|+|++++++++++.+. ...+..|++++|+.++++.++|+.++++++.++++++++++.+.|+++.
T Consensus 252 ~~~~K~l~gg~~~ig~v~~~~~~~~~l~---~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~ 328 (401)
T PRK00854 252 TLIGKALSGGFYPVSAVLSNSEVLGVLK---PGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR 328 (401)
T ss_pred EEecccccCCccCeEEEEEcHHHHhccc---CCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987 69999999999999876 3446778899999999999999998777789999999999999999873
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~ 466 (476)
. ....++++.|.|+.+.+..+ .....++.+.|+++||++.+.+...+|++ +.+++++|++++++
T Consensus 329 ~--~~~~~~~g~g~~~~i~~~~~------------~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~ 394 (401)
T PRK00854 329 S--NIVREVRGRGLMLAVELEPE------------AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQ 394 (401)
T ss_pred c--CceEEEeccceEEEEEEecC------------chhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHH
Confidence 2 33456788999999887532 11236788999999999987655677775 68999999999999
Q ss_pred HHHHHH
Q 011856 467 AEKVKM 472 (476)
Q Consensus 467 l~~~~~ 472 (476)
|++++.
T Consensus 395 l~~~l~ 400 (401)
T PRK00854 395 IAKVLA 400 (401)
T ss_pred HHHHhh
Confidence 998864
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-54 Score=430.30 Aligned_cols=366 Identities=28% Similarity=0.429 Sum_probs=315.2
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+++||.|||+||||.++++++++||+||++.+++.+++++.. ...++.+...+|++++++.. +.+++
T Consensus 21 ~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 99 (396)
T PRK02627 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS-GMDKV 99 (396)
T ss_pred CCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc-CCCEE
Confidence 4899999999999999999999999999999999999999999999998742 23457889999999999987 67999
Q ss_pred EEeCCHHHHHHHHHHHHHhccCC-----ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+|++||+||++.|+++++.++++ ++|+.++++|||++...+...+......... .....+..++++|+
T Consensus 100 ~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~ 172 (396)
T PRK02627 100 FFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFE-------PLVEGFIYVPFNDI 172 (396)
T ss_pred EECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCC-------CCCCCceEeCCCCH
Confidence 99999999999999999888776 7899999999999988887766532211110 01123566788999
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhh
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~ 312 (476)
+++++.+. +++++|++||+++++|...++++++++|+++|++||++||+||+|+|| ++|.+++.+++++.||++||
T Consensus 173 ~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~ 249 (396)
T PRK02627 173 EALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTL 249 (396)
T ss_pred HHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEE
Confidence 99999985 378999999999999988888999999999999999999999999999 88877777788999999999
Q ss_pred hhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 313 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 313 sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
||++++|+|+||+++++++++.+.. ..+..|+++|+++++++.++|+.++++++.+++++++++++++|+++..+++
T Consensus 250 sK~~~~G~rig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (396)
T PRK02627 250 AKGLGGGVPIGAVLAKEKVADVFTP---GDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYP 326 (396)
T ss_pred cchhhCCcccEEEEEcHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988763 3466789999999999999999887788999999999999999999877677
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
....+++.|.++++++.. ...++++.|+++||++.+.+.+.+|+ ++.++++++++++++|+++
T Consensus 327 ~~~~~~~~g~~~~i~~~~---------------~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 391 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDR---------------PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEV 391 (396)
T ss_pred CeeeeccCcEEEEEEecC---------------cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 667788889999998821 12578899999999999877666777 4589999999999999999
Q ss_pred HHHhh
Q 011856 471 KMRFL 475 (476)
Q Consensus 471 ~~~~~ 475 (476)
+++++
T Consensus 392 l~~~~ 396 (396)
T PRK02627 392 LKELL 396 (396)
T ss_pred HHhhC
Confidence 98753
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=389.30 Aligned_cols=401 Identities=22% Similarity=0.332 Sum_probs=330.3
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-C
Q 011856 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-T 132 (476)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~ 132 (476)
.+..++.++++.. ....|.+. +|+.+.|++|.|++|.+|++|||+.+|. .-.||+||+|++|...|+... +
T Consensus 8 ~etlklRk~hIG~----~Cq~Fy~s--DP~kivRaq~QYmfDE~g~~yLDCInNV--aHvghchp~VV~A~~kQmat~~t 79 (452)
T KOG1403|consen 8 TETLKLRKQHIGQ----ACQLFYRS--DPLKIVRAQGQYMFDEEGTRYLDCINNV--AHVGHCHPEVVRAGAKQMATIST 79 (452)
T ss_pred HHHHhHHHhccCc----ceeEEecC--CchhhehhccceeeccCcccHHHHhhhh--hhcccCCHHHHHHHHHHHhHhcc
Confidence 5677888888754 33444332 5999999999999999999999999997 678999999999999999874 3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC------CCC
Q 011856 133 SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------SGV 206 (476)
Q Consensus 133 ~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g------~~~ 206 (476)
+..+.+....+.++.|...+|+.+-++|+|||+|||+.|+|+||.+++..++|..+..|||+....+..+. .++
T Consensus 80 N~RFlhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v 159 (452)
T KOG1403|consen 80 NNRFLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGV 159 (452)
T ss_pred cchhhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCc
Confidence 34455666788999999999999999999999999999999999999999999999999999877665432 111
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCC-------C-----HHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFN-------D-----VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-------d-----~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
.. |+.-. -...++++.-.|. | .+.+++++++ .+..++++|.|..++-||.+.||.+|++.
T Consensus 160 ~k---pd~VH--VAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~ 234 (452)
T KOG1403|consen 160 AK---PDYVH--VAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQA 234 (452)
T ss_pred CC---CceeE--ecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHH
Confidence 11 11000 0111122222221 1 3456666643 23468999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCC
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~ 349 (476)
+.+..+.+|-+.|.||||+|| |.|. .|+++.+++.|||+|++|.+|+|.|+++++.++++.+.+...+ +..++||++
T Consensus 235 Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atg-v~YFNTyGG 313 (452)
T KOG1403|consen 235 VADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATG-VEYFNTYGG 313 (452)
T ss_pred HHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhcccc-ceehhccCC
Confidence 999999999999999999999 9986 6888999999999999999999999999999999999987432 446789999
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHH
Q 011856 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (476)
Q Consensus 350 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (476)
||++|+++++.++.++++++.++..+.+.+|...|+++..+++++.++||.|+|+++++.++.. .+.|+...+..
T Consensus 314 nPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~-----tRtP~tk~A~~ 388 (452)
T KOG1403|consen 314 NPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRK-----TRTPDTKEAHW 388 (452)
T ss_pred CchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccc-----cCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987642 34577777788
Q ss_pred HHHHHHHC-CeEeccCCCcceEE----eCCCcHHHHHHHHHHHHHHHHH
Q 011856 430 FYRGMLEE-GVYFAPSQFEAGFT----SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 430 ~~~~l~~~-Gv~~~~~~~~~~~~----~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+...|.+. ||++...+++...+ +++.+++++++++..|++++..
T Consensus 389 ~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 389 VVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTV 437 (452)
T ss_pred HHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence 88888865 79998877665433 7899999999999999998863
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=422.37 Aligned_cols=370 Identities=26% Similarity=0.381 Sum_probs=310.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+.+++++..... +.++...++++.+.+.. +.+++
T Consensus 13 ~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 91 (400)
T PTZ00125 13 LPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF-GYDKV 91 (400)
T ss_pred CCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC-CCCEE
Confidence 4789999999999999999999999999999999999999999999998743222 23566677777777665 67899
Q ss_pred EEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||++|++.|+++++.+ +++++|+.++++|||++...+..++.......+ .+ ....+..+++
T Consensus 92 ~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~ 164 (400)
T PTZ00125 92 LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF--GP-----FVPGFELVDY 164 (400)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC--CC-----CCCCceEeCC
Confidence 99999999999999998754 246789999999999999888776542211100 00 0113566788
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi 309 (476)
+|+++|++.++. +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| ++|.++..+++++.||+
T Consensus 165 ~d~~~le~~l~~--~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~ 242 (400)
T PTZ00125 165 NDVEALEKLLQD--PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDI 242 (400)
T ss_pred CCHHHHHHHhCC--CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCE
Confidence 999999999972 479999999999999999999999999999999999999999999999 88877777788999999
Q ss_pred hhhhhhcCCCC-cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 310 TTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 310 ~t~sK~lg~G~-~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+++||++++|+ |+|++++++++++.+.. ..+..|++++|+.++++.++|+.++++++.+++++++++++++|+++.
T Consensus 243 ~~~sK~l~~g~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~ 319 (400)
T PTZ00125 243 VLLGKALSGGLYPISAVLANDDVMLVIKP---GEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELL 319 (400)
T ss_pred EEEcccccCCCcCcEEEEEcHHHHhhccC---CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 99999999999998763 335678899999999999999998877899999999999999999886
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~ 466 (476)
..++.+..+++.|.++++++..+ +......+.+.|+++||++.|.+.+.+|++ +.++++++++++++
T Consensus 320 ~~~~~~~~~~~~g~~~~v~~~~~-----------~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~ 388 (400)
T PTZ00125 320 KKSPWVKEIRGKGLLNAIVFDHS-----------DGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEI 388 (400)
T ss_pred hcCCCeEEEecccEEEEEEEccC-----------cchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHH
Confidence 66677777888999999988531 112346788999999999998876778885 77999999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|++++.++
T Consensus 389 l~~~l~~~ 396 (400)
T PTZ00125 389 IKKVLKSF 396 (400)
T ss_pred HHHHHHHH
Confidence 99998865
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=417.77 Aligned_cols=360 Identities=27% Similarity=0.349 Sum_probs=303.5
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+|+||.||++||||.++++..++|| ||+|.+|+.+++++... ..+..+.+.++++.+... ....+
T Consensus 11 ~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~--~~~~~ 87 (375)
T PRK04260 11 AAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD--KDYLA 87 (375)
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC--cCCEE
Confidence 47899999999999999999999999998899999 99999999999987422 223567777888777542 12367
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
+|++||+||++.|++++|.++++++|+.++++|||++...+..++.......+ ...+ ..+..++++|++++++
T Consensus 88 ~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~dl~~l~~ 160 (375)
T PRK04260 88 FFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGF--GDGV-----PHFSYAIFNDLNSVKA 160 (375)
T ss_pred EEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCC--CCCC-----CCeEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999998888776643221111 1111 1233346789999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 317 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg 317 (476)
.+++ ++++|++||+++++|.+.++++||++|+++|++||+++|+||+|+|| ++|.++.++.+++.||++||||+++
T Consensus 161 ~l~~---~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~ 237 (375)
T PRK04260 161 LVNK---NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLA 237 (375)
T ss_pred hcCC---CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccccc
Confidence 8853 68999999999999999999999999999999999999999999999 8877767778899999999999999
Q ss_pred CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+|+|+|++++++++++.+.. ..+.+|+++||++++++.++|+.++.+++.++++++++++++.|.++..+++.+..+
T Consensus 238 ~G~~ig~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (375)
T PRK04260 238 NGVPVGAMLAKSSLGGAFGY---GSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV 314 (375)
T ss_pred CCcceEEEEEcHHHHhhcCC---CCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE
Confidence 99999999999999988863 346779999999999999999998878899999999999999999988777767788
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
++.|+++++++... ..++.+.|+++||++.+.+...+|+ ++.++++|+++++++|++++
T Consensus 315 ~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 315 RGLGYMIGIETTAD---------------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred eccceEEEEEecCc---------------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 88999999998321 2578899999999998876566776 57889999999999998763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=388.11 Aligned_cols=362 Identities=30% Similarity=0.429 Sum_probs=301.3
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
++|+++++++|+++||.||++||||.++++++++||++|.|.+++.+++++.. ...++.+...+|++++++++ +.++
T Consensus 8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~ 86 (379)
T TIGR00707 8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHS-GADR 86 (379)
T ss_pred CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-CCCE
Confidence 35899999999999999999999999999999999999999999999998742 22357888999999999999 5679
Q ss_pred EEEeCCHHHHHHHHHHHHHhccC-----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 158 VRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+++++||++|++.++++++.+++ +++|++++++|||+...+...++...... ... ....+...+++||
T Consensus 87 ~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~d 159 (379)
T TIGR00707 87 VFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK-----GFE--PLVPGFSYAPYND 159 (379)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc-----cCC--CCCCCceeeCCCC
Confidence 99999999999999998877665 68999999999999888877665432110 000 1112345667889
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
++++++.+++ ++++|+++|+++++|...++.+++++|.++|++||+++|+||+|+|| +.|..+....+++.||++|
T Consensus 160 ~~~l~~~~~~---~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t 236 (379)
T TIGR00707 160 IESLKKAIDD---ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT 236 (379)
T ss_pred HHHHHHHhhh---CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEE
Confidence 9999999864 57899999999989987778889999999999999999999999999 7765555566788999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+||+++++++++.+.. ..+..+++.|+++++++.++|+.++.+++.+++++++++++++|+++....
T Consensus 237 ~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 237 LAKGLGGGVPIGATLAKEEVAEAFTP---GDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred EcccccCCcccEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998873 334567888999999999999988777899999999999999999876555
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
+. ..+++.|.++++.+..+ ..++.+.|.++||++.+.+.+.+|++ +.+|++++++++++|++
T Consensus 314 ~~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 377 (379)
T TIGR00707 314 PN-KEVRGKGLMLGIELEAP---------------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEE 377 (379)
T ss_pred CC-CccccCceEEEEEecCc---------------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 43 34556788888887421 25788889999999999776678885 57899999999999987
Q ss_pred HH
Q 011856 470 VK 471 (476)
Q Consensus 470 ~~ 471 (476)
++
T Consensus 378 ~~ 379 (379)
T TIGR00707 378 AI 379 (379)
T ss_pred hC
Confidence 63
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=326.93 Aligned_cols=394 Identities=20% Similarity=0.230 Sum_probs=313.4
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..++++|+++.++..++... +.+++| .-.++.-|.|++|+|||.+||..+.+++.++|++||.+++++..
T Consensus 34 sIPGPks~~l~kel~~v~~t---~~v~F~-------~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~ 103 (484)
T KOG1405|consen 34 SIPGPKSQELKKELDKVQDT---EAVHFF-------VDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQ 103 (484)
T ss_pred cCCCchhHHHHHHHhHhhcc---cceEEe-------hhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcC
Confidence 56689999999999888765 334433 33458899999999999999999999999999999999988653
Q ss_pred -HHHh-cCC---CC-C-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc--------------------
Q 011856 127 -TMKK-GTS---FG-A-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------------------- 178 (476)
Q Consensus 127 -~l~~-~~~---~~-~-~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-------------------- 178 (476)
++.+ ... .+ + +.++.+.|.+.+.+..| +.++|++.-+|+.||+.|++.+..+
T Consensus 104 p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm 183 (484)
T KOG1405|consen 104 PQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCM 183 (484)
T ss_pred hHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 2211 111 11 2 34555566666777777 7889999999999999999987432
Q ss_pred ------cCCceEEEEeCCCCCCchhHHhhcCCCC-ccCCCCCCCCCCCCCCCceeeccC------C------CHHHHHHH
Q 011856 179 ------TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF------N------DVSALENL 239 (476)
Q Consensus 179 ------~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~------d~~~le~~ 239 (476)
++.--|+.|.++|||.+.+.++.+.+.. ..+.+|.++.-.... +.+.+|. | .++.+|++
T Consensus 184 ~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~f--P~ykYPLdenv~~N~ked~~Cl~~Ve~l 261 (484)
T KOG1405|consen 184 INQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPF--PRYKYPLDENVAENKKEDQGCLAEVEDL 261 (484)
T ss_pred hcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCC--ccccCChhhhhhhhhhhhhhHHHHHHHH
Confidence 0123589999999999999999887654 445555443321111 1233332 2 37889999
Q ss_pred HhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCC--Cchhhhh
Q 011856 240 FENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLG 313 (476)
Q Consensus 240 l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pDi~t~s 313 (476)
|.++. ..++++|+||+|++||+...+++|+++|+++|+|||+.+|+||||||- .+|..|+++|+++. ||++|||
T Consensus 262 i~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFS 341 (484)
T KOG1405|consen 262 IVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFS 341 (484)
T ss_pred HHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehh
Confidence 98754 478999999999999999999999999999999999999999999999 89999999999984 7999999
Q ss_pred hhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011856 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG- 392 (476)
Q Consensus 314 K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 392 (476)
|-|-. .|++. .+ .+++..++.+++||.+.|.-+....++++.++++++.++++..+++|.++|.++..++|
T Consensus 342 KK~q~---gGffh-~~----~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~ 413 (484)
T KOG1405|consen 342 KKFQT---GGFFH-DE----EFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPG 413 (484)
T ss_pred hhhhc---Ccccc-Cc----ccCCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 98873 22332 22 24444567789999999999999999999999999999999999999999999998887
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
.+..+||.|.|+.+++.++ ...+.+...++-+|+.+..++...+|+ ++..++.+.+-++++|++.
T Consensus 414 ~~~~~RGrGTF~a~d~ps~-------------~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~ 480 (484)
T KOG1405|consen 414 KINNLRGRGTFIAWDCPSG-------------SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKI 480 (484)
T ss_pred hhhcccccceEEEEeCCCh-------------HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHH
Confidence 5667899999999998543 344688899999999999988777665 7899999999999999998
Q ss_pred HHH
Q 011856 471 KMR 473 (476)
Q Consensus 471 ~~~ 473 (476)
++.
T Consensus 481 l~~ 483 (484)
T KOG1405|consen 481 LAG 483 (484)
T ss_pred hcc
Confidence 864
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=326.84 Aligned_cols=377 Identities=20% Similarity=0.296 Sum_probs=288.2
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK 130 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~ 130 (476)
+.+|..+..++|.|...-.+...... ...+++.+++|+++| +||++||||.++ +++|. +||+|++++.+++++
T Consensus 65 ~~~~~~~l~~~~~p~~l~~~~~~~~~--~~~~~~~~~~G~~i~-~~G~~~id~~s~---~~lgl~~~~~i~ea~~~al~~ 138 (481)
T PLN02822 65 TEKEIDELCDEWTPEPLIPPITEEMR--PEPPVLESAAGPHTI-INGKDVVNFASA---NYLGLIGNEKIKESCTSALEK 138 (481)
T ss_pred CHHHHHHHHhcCCCCCCCCCCchhcc--ccCCceecCCCCeEE-ECCceEEEeECC---CcCCCCCCHHHHHHHHHHHHH
Confidence 45778888999999977654332222 124588899999999 899999999998 77787 699999999999998
Q ss_pred -cCC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC
Q 011856 131 -GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 131 -~~~------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
+.. ++++.+...+|+++|+++++..+.++|++|++ ++..+++ ++++++++|++++.||+.....+...+
T Consensus 139 ~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~d~~~H~s~~~~~~ls~ 214 (481)
T PLN02822 139 YGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIP---AFCKKGDIIVADEGVHWGIQNGLYLSR 214 (481)
T ss_pred hCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHH---HhCCCCCEEEEeCCccHHHHHHHHHcC
Confidence 432 33567889999999999998777888876555 7888888 778888999999999987655554433
Q ss_pred CCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC------CCe-EEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK------GEI-AAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
. +++.++|||.++++..+++.. +++ ++|++|++++++|.+.| |++|+++|
T Consensus 215 ~-------------------~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~ 271 (481)
T PLN02822 215 S-------------------TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLK 271 (481)
T ss_pred C-------------------eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHH
Confidence 2 467789999999988886421 234 89999999999999999 99999999
Q ss_pred HHhCCEEEEecccc-Cc--cccccchhhccCC---CCchhh--hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCC
Q 011856 277 KENGALLIFDEVMT-GF--RLAYGGAQEYFGV---TPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~---~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~ 348 (476)
++||++||+||+|+ |. ++| .+..+++++ .+|+++ |||++|. ..|++++++++++.++. ..+..+|+
T Consensus 272 ~k~~~~LIvDEa~s~gvlG~~G-~G~~e~~~v~~~~~dii~~s~sKalg~--~GG~i~g~~~ii~~~~~---~~~~~~fs 345 (481)
T PLN02822 272 EKYRFRVLLDESNSFGVLGKSG-RGLSEHFGVPIEKIDIITAAMGHALAT--EGGFCTGSARVVDHQRL---SSSGYVFS 345 (481)
T ss_pred HHcCCEEEEECCccccccCCCC-CChHHHcCCCCCCCeEEEecchhhhhh--CCeEEEcCHHHHHHHHh---cCCceeec
Confidence 99999999999996 32 344 346788988 678875 8899982 23889999999998873 23445666
Q ss_pred Cc--HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 349 GN--PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 349 ~~--~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
++ |..++|++++|+.+++ ++++++++++++++++.|++.. ++.....+.+.++.+.+.+.. .. ...+..
T Consensus 346 a~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~-~~----~~~~~~ 417 (481)
T PLN02822 346 ASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKST-GS----AKEDLS 417 (481)
T ss_pred cccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCc-cc----ccchHH
Confidence 55 8889999999998876 6789999999999999998752 222222345677777774310 00 001223
Q ss_pred HHHHHHHHHH-HCCeEeccCCC---------cceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 426 KFARFYRGML-EEGVYFAPSQF---------EAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 426 ~~~~~~~~l~-~~Gv~~~~~~~---------~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
...++++.|+ ++||++.+..+ +.+|+ +..+|++||++++++|++++.+++
T Consensus 418 ~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 418 LLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred HHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4568899998 88999997532 23565 577999999999999999998765
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=309.42 Aligned_cols=342 Identities=18% Similarity=0.239 Sum_probs=245.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHHHHHh-c-CCCC-----CCCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK-G-TSFG-----APCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~l~~-~-~~~~-----~~~~~~~~la~~l~~~~ 152 (476)
.++++.+++|+++||.||++||||.++ +++| |+||+|++|+.+++++ + ..++ ...+...+++++|++++
T Consensus 28 ~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~ 104 (402)
T PRK07505 28 NGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF 104 (402)
T ss_pred ccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh
Confidence 467899999999999999999999986 8999 9999999999999987 3 1221 23567889999999998
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHh--cc-CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARA--FT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~--~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
+. ++++++||++|++.++++++. ++ ++.++|+++++||+...... + ... ...++..+|
T Consensus 105 ~~--~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~---~-------------~~~-~~~~v~~~~ 165 (402)
T PRK07505 105 GA--SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILK---G-------------ICA-DETEVETID 165 (402)
T ss_pred CC--CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhh---h-------------hhh-cCCeEEEeC
Confidence 54 778888999999999998653 23 56679999999998431110 0 000 012577889
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc--cCc-cccccchhhccCC-
Q 011856 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM--TGF-RLAYGGAQEYFGV- 305 (476)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~--~g~-r~g~~~~~~~~g~- 305 (476)
++|+++|+++++.. ..+++++||++++ |.+.+ +++|+++|++||++||+||+| ++| ++|.++..++++.
T Consensus 166 ~~d~~~l~~~~~~~--~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~ 238 (402)
T PRK07505 166 HNDLDALEDICKTN--KTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238 (402)
T ss_pred CCCHHHHHHHHhcC--CCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCC
Confidence 99999999998643 5788999999876 55666 899999999999999999999 567 7777666677887
Q ss_pred CCchh----hhhhhcCCCCcEEEEE-ecHHHHHhhcCCCCccccCCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011856 306 TPDLT----TLGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLS--GNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (476)
Q Consensus 306 ~pDi~----t~sK~lg~G~~iG~~~-~~~~i~~~l~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (476)
.||.+ |+||+++++ .|+++ .++++++.+.. ..+..||+ .+++++++++++++.+.++.+.+. .+
T Consensus 239 ~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~---~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~----~~ 309 (402)
T PRK07505 239 LNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILR---YAGPLAFSQSLNVAALGAILASAEIHLSEELDQL----QQ 309 (402)
T ss_pred CCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHH---hCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH----HH
Confidence 67754 799999853 47765 47888888763 22333444 456899999999987655444332 23
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT 451 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~ 451 (476)
++++.+..+.. . ....+++.+.++.+.... +.....++.+.|+++||++.+..+ ..+|+
T Consensus 310 ~l~~~~~~~~~-~-~~~~~~g~~~~i~~~~~~------------~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi 375 (402)
T PRK07505 310 KLQNNIALFDS-L-IPTEQSGSFLPIRLIYIG------------DEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRI 375 (402)
T ss_pred HHHHHHHHHHH-H-HHhcCCCCCCCEEEEEeC------------CHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEE
Confidence 33333322211 0 011224445444322211 112346788999999999987531 34666
Q ss_pred --eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 --SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+|++|+++++++|++++++-
T Consensus 376 ~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 376 MFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred ecCccCCHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999998764
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=292.63 Aligned_cols=332 Identities=23% Similarity=0.313 Sum_probs=268.6
Q ss_pred eecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
+..+..++ .+|++++||++| +|||. +||++++++.+++++ +... .++.+...+|.++|++++ +.|.+
T Consensus 28 ~~~~~~~~-~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~-g~e~a 102 (388)
T COG0156 28 RRQGLAIR-ADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL-GAEAA 102 (388)
T ss_pred ccCCccee-cCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh-CCCcE
Confidence 33355555 669999999999 99999 699999999999998 4322 346788889999999988 88899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++.+||..||..++. ++.+++++|+.|.-.|.+....+.+++ .+++.++|||+++||+
T Consensus 103 l~f~SGy~AN~~~i~---~l~~~~dli~~D~lnHASiidG~rls~-------------------a~~~~f~HnD~~~Le~ 160 (388)
T COG0156 103 LLFSSGFVANLGLLS---ALLKKGDLIFSDELNHASIIDGIRLSR-------------------AEVRRFKHNDLDHLEA 160 (388)
T ss_pred EEEcccchhHHHHHH---HhcCCCcEEEEechhhhhHHHHHHhCC-------------------CcEEEecCCCHHHHHH
Confidence 999999999999999 788889999999999997655554433 3578899999999999
Q ss_pred HHhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCc---hh
Q 011856 239 LFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPD---LT 310 (476)
Q Consensus 239 ~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pD---i~ 310 (476)
.++++. .+.+.|++|.+++|.|++.| |++|.+||++||++|++||+| .|+ ...+.+..+++|+.++ |+
T Consensus 161 ~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~ 236 (388)
T COG0156 161 LLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDII 236 (388)
T ss_pred HHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEE
Confidence 998632 14689999999999999999 999999999999999999999 688 6555677788888754 33
Q ss_pred --hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH
Q 011856 311 --TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 311 --t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 387 (476)
||||+||+ -.|++.+++.+++.+.+..+.+.++| +.+|..++++.++|+.+++ ++.+++++++..++++.+...
T Consensus 237 ~gTlsKAlGs--~Gg~v~g~~~~~d~L~~~ar~~ifSt-alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~ 313 (388)
T COG0156 237 VGTLGKALGS--SGGYIAGSAALIDYLRNRARPFIFST-ALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313 (388)
T ss_pred EEEchhhhcc--cCceeeCcHHHHHHHHHhCCceeccC-CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999995 25677899999999988777788877 7789999999999999987 789999999999999666554
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc-------eEE--eCCCcHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSSD 458 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-------~~~--~~~~t~e 458 (476)
.... .+....++.+.+. +...+.++...|+++||++.+..+|. +|+ +..||++
T Consensus 314 ~~~~-----~~s~s~I~pv~~g-------------d~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~ 375 (388)
T COG0156 314 GLVL-----LPSESPIIPVILG-------------DEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEE 375 (388)
T ss_pred CCcc-----CCCCCCeeeeEeC-------------CHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHH
Confidence 2211 1233344455553 44567788999999999998876554 344 6899999
Q ss_pred HHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKV 470 (476)
Q Consensus 459 ~i~~~~~~l~~~ 470 (476)
||+.++++|.++
T Consensus 376 ~I~~l~~~l~~~ 387 (388)
T COG0156 376 DIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=289.62 Aligned_cols=327 Identities=17% Similarity=0.165 Sum_probs=255.3
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
.+++++||+++ +|||. +||++++++.+.+++ |++. .+......+|.++|++++ +.|.+++++||+.||
T Consensus 100 ~~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~-g~e~all~sSGy~AN 175 (476)
T PLN02955 100 RFKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK-KKEDCLVCPTGFAAN 175 (476)
T ss_pred CCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH-CCCcEEEECChHHHH
Confidence 45799999999 99999 699999999999988 4332 235677788888888888 789999999999999
Q ss_pred HHHHHHHHh-----------ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 169 MGVLRLARA-----------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 169 ~~al~~ar~-----------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
..++...-. ..+++.+|+.|...|.+....+.+... ....+++.++|||+++|+
T Consensus 176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~---------------~~~a~~~~f~HND~~~Le 240 (476)
T PLN02955 176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER---------------QGNVEVFVYRHCDMYHLN 240 (476)
T ss_pred HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccc---------------cCCceEEEeCCCCHHHHH
Confidence 999984310 135677888899999876655544321 001247789999999999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--cccccchhhccCCCCch----hh
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDL----TT 311 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pDi----~t 311 (476)
++++++.++.+.|++|+++++.|.+.| |++|.++|++||++||+||+|+.+ .....+..+++|+.+|+ .|
T Consensus 241 ~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~T 316 (476)
T PLN02955 241 SLLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGT 316 (476)
T ss_pred HHHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEe
Confidence 999876666789999999999999999 999999999999999999999644 44346778899987776 48
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|||++|. +.|++++++++++.++..++.++++| +.+|..+++++++++.+.+ +..+++++++.+++++.+
T Consensus 317 LsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~------ 387 (476)
T PLN02955 317 LSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS------ 387 (476)
T ss_pred Cccchhc--cCceeecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 9999974 56778999999999987667777777 6667777888899998865 556788888888887631
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc-------eEE--eCCCcHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-------~~~--~~~~t~e~i~ 461 (476)
+... ...++.+.+. +......+++.|+++||++.+..+|. +|+ +..||++||+
T Consensus 388 -G~~~----~sPI~pI~ig-------------~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId 449 (476)
T PLN02955 388 -GVDI----SSPIISLVVG-------------NQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVK 449 (476)
T ss_pred -CCCC----CCCEEEEEeC-------------CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHH
Confidence 2111 1445555553 34556788999999999998776553 454 6799999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|.++.+.
T Consensus 450 ~lv~~L~~~~~~ 461 (476)
T PLN02955 450 KLITALSSCLDF 461 (476)
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=286.50 Aligned_cols=329 Identities=21% Similarity=0.226 Sum_probs=245.5
Q ss_pred cCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA 167 (476)
.+|+++++|+++ +|||. +||+|++|+.+++++ +.. .+++.+...+|+++++++++ .+.+++++||++|
T Consensus 42 ~~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g-~~~~l~~~sG~~a 117 (402)
T TIGR01821 42 DGAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG-KESALVFTSGYVA 117 (402)
T ss_pred CCCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC-CCeEEEECchHHH
Confidence 346999999999 99999 599999999999988 322 12356778899999999985 5788999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GE 246 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~ 246 (476)
++.+++++... .++++|+.+..+|+.....+...+. ++..++++|+++++++++... ++
T Consensus 118 n~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~ 177 (402)
T TIGR01821 118 NDATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGA-------------------EKFIFRHNDVAHLEKLLQSVDPNR 177 (402)
T ss_pred HHHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCC-------------------eEEEECCCCHHHHHHHHHhccCCC
Confidence 99999975433 2456778788899866554433322 234567789999999997543 25
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCC--CCchh--hhhhhcCCC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pDi~--t~sK~lg~G 319 (476)
+++|++|++++++|.+.| +++|+++|++||++||+||+|+ |+ ..|. +..+++++ .+|++ ||||++|.
T Consensus 178 ~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~- 251 (402)
T TIGR01821 178 PKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-GIAERDGLMHRIDIIEGTLAKAFGV- 251 (402)
T ss_pred CeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-ccchhccCCCCCeEEEEechhhhcc-
Confidence 789999999999999998 9999999999999999999996 65 3333 33455665 46776 89999983
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
..||+++++++++.+......+.+ +.+.+|+++++++++|+.+++ +.+.++++++.+++++.|+++. +.. +.
T Consensus 252 -~GG~i~~~~~~~~~l~~~~~~~~~-t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~ 324 (402)
T TIGR01821 252 -VGGYIAASRKLIDAIRSYAPGFIF-TTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG--IPV---IP 324 (402)
T ss_pred -CCceeecCHHHHHHHHHhCcCcee-cCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC--CCc---CC
Confidence 237888999999888643222222 457899999999999998876 3456667788888988888752 221 23
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCCC-------cceEE--eCCCcHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-------~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
+.+.++.+.+.. .....++.+.|++ +||++.+..+ ..+|+ ++.+|++|+++++++|+
T Consensus 325 ~~~~i~~i~~~~-------------~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~ 391 (402)
T TIGR01821 325 NPSHIVPVIIGD-------------AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALL 391 (402)
T ss_pred CCCCEEEEEeCC-------------HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 456676665421 1234578888875 5999876422 34565 56899999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
++++++
T Consensus 392 ~~~~~~ 397 (402)
T TIGR01821 392 LVWDRL 397 (402)
T ss_pred HHHHHc
Confidence 998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=286.57 Aligned_cols=327 Identities=20% Similarity=0.217 Sum_probs=247.3
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
+|+++++|+++ +|||+ +||+|++|+.+++++. ... .+..+...+|+++++++++ .+++++++||++|+
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g-~~~~~~~~SG~~An 118 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG-KEAALLFTSGYVSN 118 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC-CCcEEEeCCcHHHH
Confidence 46899999999 99999 7999999999999883 211 1235578899999999984 58999999999999
Q ss_pred HHHHH-HHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC-CCC
Q 011856 169 MGVLR-LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGE 246 (476)
Q Consensus 169 ~~al~-~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~ 246 (476)
+.+++ +++.+ ++++|+++..||+.....+...+. .+..++++|++++++.++.. +++
T Consensus 119 ~~ai~~l~~~~--~g~~I~~~~~~H~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~ 177 (406)
T PRK13393 119 WAALSTLGSRL--PGCVILSDELNHASMIEGIRHSRA-------------------EKRIFRHNDPADLERKLSDLDPHR 177 (406)
T ss_pred HHHHHHhhcCC--CCCEEEEccchhHHHHHHHHHcCC-------------------eEEEeCCCCHHHHHHHHHhccCCC
Confidence 99999 33322 456888899999977665543322 24567788999999988754 235
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCC--Cchh--hhhhhcCCC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT--PDLT--TLGKIIGGG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~--pDi~--t~sK~lg~G 319 (476)
+++|++|++++++|.+.| +++|.++|++||+++|+||+|+ |+ +.|..+ .+++++. +|++ ||||+++.
T Consensus 178 ~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~- 251 (406)
T PRK13393 178 PKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV- 251 (406)
T ss_pred CEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc-
Confidence 789999999999999999 9999999999999999999995 77 445433 3666665 5666 89999983
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
..||+++++++++.+......+. .+.+.+|.+++++.++|+.+++. ...++++++.+++++.|+++. .. .++
T Consensus 252 -~GG~~~~~~~~~~~l~~~~~~~~-~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~---~~~ 324 (406)
T PRK13393 252 -MGGYITGSAALCDFIRSFASGFI-FTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG--IP---HLP 324 (406)
T ss_pred -cCceeeCCHHHHHHHHHhCcCce-ecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC--CC---cCC
Confidence 23788889999888764322222 35577899999999999987653 234666788889999888752 22 235
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCCC-------cceEE--eCCCcHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-------~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
+.|.++.+.+.+ .....++.+.|++ +||++.+..+ ..+|+ ++.+|++|+|+++++|+
T Consensus 325 ~~~~i~~v~~~~-------------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~ 391 (406)
T PRK13393 325 NPSHIVPVMVGD-------------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALS 391 (406)
T ss_pred CCCCeEEEEeCC-------------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 677787775521 1234678888887 5999876422 34666 57899999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
++++++
T Consensus 392 ~~~~~~ 397 (406)
T PRK13393 392 EIWARL 397 (406)
T ss_pred HHHHhc
Confidence 987653
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=280.67 Aligned_cols=327 Identities=21% Similarity=0.227 Sum_probs=243.8
Q ss_pred CCEEEecccChhhccCCCC-cHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~~-~~------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~ 169 (476)
|++++||+++ +|||++ ||+|++++.+++++. .. ..++.+...+|+++++++++ .+..++++||++|++
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~~~~~~~~sG~~an~ 120 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-KEAALVFTSGYVSND 120 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-CCcEEEECcHHHHHH
Confidence 5899999999 999995 999999999999873 21 12357788999999999885 567888899999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIA 248 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a 248 (476)
.++++++.. .++.+++.+..+|+.....+...+. +...++++|+++|+++++... ++++
T Consensus 121 ~ai~~l~~~-~~~~~i~~~~~~h~s~~~~~~~~~~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~ 180 (407)
T PRK09064 121 ATLSTLAKL-IPDCVIFSDELNHASMIEGIRRSRC-------------------EKHIFRHNDVAHLEELLAAADPDRPK 180 (407)
T ss_pred HHHHHHhCC-CCCCEEEEeCcchHHHHHHHHHcCC-------------------cEEEECCCCHHHHHHHHHhccCCCCe
Confidence 999975443 3456777776667654433322221 245567889999999997532 4678
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCC--CCchh--hhhhhcCCCCc
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLP 321 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pDi~--t~sK~lg~G~~ 321 (476)
+|++|++++++|.+.| +++|+++|++||++||+||+|+ |+ +.|..+ .++.++ .+|++ ||||++|. .
T Consensus 181 ~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--~ 253 (407)
T PRK09064 181 LIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--M 253 (407)
T ss_pred EEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--c
Confidence 9999999999999998 9999999999999999999996 74 445433 456665 46877 89999973 2
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
.||+++++++++.+......+.+ +.+.+|.++++++++|+.+++ +...++++++++++++.|++++ +.+ +...
T Consensus 254 GG~~~~~~~~~~~l~~~~~~~~~-t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~~~ 327 (407)
T PRK09064 254 GGYIAGSAALVDAVRSYAPGFIF-TTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG--IPV---MPNE 327 (407)
T ss_pred CceEecCHHHHHHHHHhCccccc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--CCC---CCCC
Confidence 37889999998887643222222 447789999999999998876 3446888999999999998753 221 2234
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCCC-------cceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-------~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
+.++.+.+.+ .....++.+.|++ +||++.+..+ ..+|+ ++.+|++|+++++++|+++
T Consensus 328 ~~iv~i~~~~-------------~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 328 SHIVPVMVGD-------------PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCEEEEEeCC-------------HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6666665521 1234678888875 5999976432 34566 5778999999999999999
Q ss_pred HHHh
Q 011856 471 KMRF 474 (476)
Q Consensus 471 ~~~~ 474 (476)
++++
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=275.38 Aligned_cols=332 Identities=16% Similarity=0.200 Sum_probs=238.1
Q ss_pred EecccChhhccCCC-CcHHHHHHHHHHHHh-cCC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHH
Q 011856 102 IDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLR 173 (476)
Q Consensus 102 iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~ 173 (476)
|||.++ +|||. .||++++++.+++++ +.+ ++.......+|.+++++++ +.+..++++||+.|+..++.
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~-g~e~al~~~sG~~a~~~~i~ 76 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL-GTESAILYSDGASTTSSTVA 76 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHHHH
Confidence 578888 99999 599999999999987 322 2223457788999999988 55678888899999998887
Q ss_pred HHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC----------
Q 011856 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---------- 243 (476)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---------- 243 (476)
. +.++++.|+.+...|+.....+...+ ..+..++++|++++++.++..
T Consensus 77 ~---l~~~GD~Vl~~~~~h~s~~~~~~l~~-------------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~ 134 (392)
T PLN03227 77 A---FAKRGDLLVVDRGVNEALLVGVSLSR-------------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRK 134 (392)
T ss_pred H---hCCCCCEEEEeccccHHHHHHHHHcC-------------------CeEEEeCCCCHHHHHHHHHHhhhhccccccc
Confidence 3 44555555555555554433322211 135667888888887765431
Q ss_pred -CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-c-cccccchhhccCCCC----chhhhh--
Q 011856 244 -KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G-F-RLAYGGAQEYFGVTP----DLTTLG-- 313 (476)
Q Consensus 244 -~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~-r~g~~~~~~~~g~~p----Di~t~s-- 313 (476)
.+++++|++||+++++|.+.| +++|+++|++||++||+||+|+ | + ++|. +..+++|+.| |++++|
T Consensus 135 ~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls 209 (392)
T PLN03227 135 PTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE 209 (392)
T ss_pred cCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech
Confidence 135788999999999999999 9999999999999999999995 2 2 3444 6789999999 988654
Q ss_pred hhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCc--HHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--PLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 314 K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~--~~~~aaa~aal~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|++ |.+.|++++++++++.++. ..+..+|+++ |+.+++++++++. ++.+++++++++++++++++|++. .
T Consensus 210 k~~--g~~gg~v~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~ 282 (392)
T PLN03227 210 NAF--GSVGGMTVGSEEVVDHQRL---SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--S 282 (392)
T ss_pred hhh--hccCcEEecCHHHHHHHHH---hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--C
Confidence 655 3466778899999887752 2344566665 7778888877755 445789999999999999999873 3
Q ss_pred cCCceEeee--------eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----------cceEE
Q 011856 391 AGHAICGGY--------ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------EAGFT 451 (476)
Q Consensus 391 ~~~~~~v~~--------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------~~~~~ 451 (476)
++.+.++++ .|+++++++.+.+... ...+.....++.+.|+++|+++.+.+. ..+|+
T Consensus 283 ~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~ 358 (392)
T PLN03227 283 HPYALKLRNRLVITSDPISPIIYLRLSDQEATR----RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRV 358 (392)
T ss_pred CccccccccccccCCCCCCCEEEEEeCCHHHhh----hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEE
Confidence 555556665 3567888885421110 001112345888999999999864321 12333
Q ss_pred --eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 452 --SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+..||+||||+++++|++++++++
T Consensus 359 ~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 359 VANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998753
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=268.89 Aligned_cols=336 Identities=21% Similarity=0.276 Sum_probs=245.4
Q ss_pred eEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCC------CCCCCHHHHHHHHHHHhhCCC
Q 011856 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVPS 154 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~------~~~~~~~~~~la~~l~~~~~~ 154 (476)
.++.+++|+++|+ +|++|||+.++ .++|| ++|+|++++.+++.+ +.. ..++.+...++++.++++++
T Consensus 24 ~~~~~~~g~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~- 98 (385)
T PRK05958 24 RPREGGAGRWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG- 98 (385)
T ss_pred cccccCCCceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-
Confidence 4688999999997 99999999998 57898 789999999999976 211 11346678889999999884
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHH
Q 011856 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 234 (476)
Q Consensus 155 ~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 234 (476)
.+.++++++|++++..+++ .+.++++.|++...+|+.+...+...|. ++..++.+|++
T Consensus 99 ~~~~i~~~~g~~~~~~~l~---~~~~~gd~V~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~ 156 (385)
T PRK05958 99 AERALLFSSGYAANLAVLT---ALAGKGDLIVSDKLNHASLIDGARLSRA-------------------RVRRYPHNDVD 156 (385)
T ss_pred CCcEEEECcHHHHHHHHHH---HhCCCCCEEEEeCccCHHHHHHHHhcCC-------------------ceEEeCCCCHH
Confidence 5677788889999988877 3455555566666777766555443332 23445666899
Q ss_pred HHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccC--CCCc-
Q 011856 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG--VTPD- 308 (476)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g--~~pD- 308 (476)
++++.++..++++++++++++++++|.+.+ +++|.++|++||++||+||+|. |+ +.|... ...++ ..+|
T Consensus 157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~ 231 (385)
T PRK05958 157 ALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDV 231 (385)
T ss_pred HHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCce
Confidence 999999754335788899999988998887 9999999999999999999995 43 233322 22222 2456
Q ss_pred --hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 011856 309 --LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 309 --i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~ 385 (476)
+.++||+++. +.|++++++++++.+......+ ..+.+.+++.++++.++|+.+++ +++.+++.++++++.+.|+
T Consensus 232 i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~ 308 (385)
T PRK05958 232 ILVGTLGKALGS--SGAAVLGSETLIDYLINRARPF-IFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLR 308 (385)
T ss_pred EEEEechhhccc--CCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4589999974 3488899999988765322222 23446788888889899988766 4677888899999999888
Q ss_pred HHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEeC--CCc
Q 011856 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHS 456 (476)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~~--~~t 456 (476)
++. .. .+.+.|.++++.+.+ .....++.+.|+++||.+.+.. ...+|+++ .++
T Consensus 309 ~~~--~~---~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~ 370 (385)
T PRK05958 309 ALG--FQ---LMDSQSAIQPLIVGD-------------NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHT 370 (385)
T ss_pred HcC--CC---cCCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCC
Confidence 752 11 134567777777631 1234678899999999997632 23577754 479
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVK 471 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~ 471 (476)
++++++++++|++++
T Consensus 371 ~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 371 EADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=269.46 Aligned_cols=333 Identities=19% Similarity=0.231 Sum_probs=238.9
Q ss_pred CCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhh
Q 011856 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISA 151 (476)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~------~~~~~~~~~~la~~l~~~ 151 (476)
++.+++..++.|.+++|.+||.||||. +||+|++++.+++++. .. +....+...+|.+.++++
T Consensus 42 ~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~ 111 (407)
T PRK07179 42 NGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAF 111 (407)
T ss_pred CCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHH
Confidence 345888999999999999999998877 5899999999999762 11 112235678888999988
Q ss_pred CCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 152 VPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 152 ~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
+ +.+.+++++||++|++.+++. +..+++.++.+...|......+...+. ++..++++
T Consensus 112 ~-g~~~~~~~~sG~~An~~~l~~---l~~~g~~v~~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~ 168 (407)
T PRK07179 112 T-GFESCLLCQSGWAANVGLLQT---IADPNTPVYIDFFAHMSLWEGVRAAGA-------------------QAHPFRHN 168 (407)
T ss_pred h-CCCcEEEECCHHHHHHHHHHH---hCCCCCEEEEECCcCHHHHHHHHHCCC-------------------eEEEecCC
Confidence 8 557789999999999999994 333334444455555443322222111 24556678
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCC--
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT-- 306 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~-- 306 (476)
|+++|++.++++ .+++|+++++++++|.+.| +++|.++|++||++||+||+|+ |. +.|.. ....+++.
T Consensus 169 d~~~l~~~l~~~--~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~ 241 (407)
T PRK07179 169 DVDHLRRQIERH--GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAG-LVAELGLTSR 241 (407)
T ss_pred CHHHHHHHHHhc--CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCc-hHHhcCCCCC
Confidence 999999999743 4688999999999999999 9999999999999999999996 32 23322 24456664
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCC-CccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (476)
+|++ +++|++++ |+|++++++++++.+.... +..+.+|+ ++..++++.++++.+.+ ++.+++++++.+++++
T Consensus 242 vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~ 317 (407)
T PRK07179 242 VHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLRE 317 (407)
T ss_pred CCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3765 58999975 7999999999888775322 12233333 35555666778887765 4578899999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec----cCC---CcceEE--eC
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ---FEAGFT--SL 453 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~---~~~~~~--~~ 453 (476)
.|+++. + .+.+.+.++++.+.. ......+.+.|.++||++. |.. ...+|+ +.
T Consensus 318 ~L~~~g--~----~v~~~~~i~~l~~~~-------------~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~ 378 (407)
T PRK07179 318 GLSELG--Y----NIRSESQIIALETGS-------------ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNA 378 (407)
T ss_pred HHHHcC--C----CCCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECC
Confidence 998752 2 223557787777632 1223567788999999743 321 235666 46
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|++|+++++++|++++++.
T Consensus 379 ~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 379 DLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999998764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=263.91 Aligned_cols=340 Identities=19% Similarity=0.256 Sum_probs=243.2
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~ 153 (476)
|.++.+++|+|+| .||++||||.++ +++|| ++|.+.+++.+++++. ... .+..++..++++++++.++
T Consensus 17 ~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g 92 (385)
T TIGR01825 17 IRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92 (385)
T ss_pred ccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC
Confidence 7889999999999 999999999987 77899 7999999999998752 211 1246788999999998875
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
. +..++.+||++++..+++. +.+++++|+.+..+|+.....+...+.. ...+++.|+
T Consensus 93 ~-~~~i~~~sG~~a~~~a~~~---~~~~gd~vi~~~~~~~~~~~~~~~~g~~-------------------~~~~~~~d~ 149 (385)
T TIGR01825 93 T-EAALVFQSGFNTNQGVLSA---LLRKGDIVLSDELNHASIIDGLRLTKAT-------------------KKIYKHADM 149 (385)
T ss_pred C-CcEEEECcHHHHHHHHHHH---hCCCCCEEEEEccccHHHHHHHHhcCCc-------------------eEEeCCCCH
Confidence 4 4556677889999988884 3344445556667777554444333321 222345588
Q ss_pred HHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---cccccchhhccCCCCc-
Q 011856 234 SALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD- 308 (476)
Q Consensus 234 ~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~pD- 308 (476)
+++++.+++.. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ +.+. +...++++.+|
T Consensus 150 ~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~ 224 (385)
T TIGR01825 150 DDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKV 224 (385)
T ss_pred HHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCC
Confidence 99998887543 35788999999999999888 999999999999999999999543 2332 23344555555
Q ss_pred ---hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 011856 309 ---LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 309 ---i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L 384 (476)
+.+|||+++. +.||+++++++++.+......+..++ ..+++.++++.++++.+.+ .+..+++.++++++.+.|
T Consensus 225 ~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L 301 (385)
T TIGR01825 225 DIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFST-AQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL 301 (385)
T ss_pred cEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccC-CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3589999963 55889999999888763222222222 3567888888999987654 567888889999999999
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-------CCcceEE--eCCC
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------QFEAGFT--SLAH 455 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~~~~--~~~~ 455 (476)
+++. ..+. ...+.++.+.+.. .....++++.|+++||++.+. +...+|+ ++.+
T Consensus 302 ~~~g--~~~~---~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~ 363 (385)
T TIGR01825 302 GKLG--YDTG---GSETPITPVVIGD-------------EKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEH 363 (385)
T ss_pred HHcC--CCCC---CCCCCEEEEEECC-------------HHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCC
Confidence 8752 2211 2233455544321 122357889999999998543 2234555 5689
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011856 456 SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~ 474 (476)
+++++++++++|+++++++
T Consensus 364 ~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 364 TKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=262.78 Aligned_cols=343 Identities=21% Similarity=0.286 Sum_probs=242.9
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCC-cHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~-~~~~~------~~~~~~~~la~~l~~~~~ 153 (476)
|.++.++.|.++++.+|++||||.++ +++|++ +|++++++.+++.+ +..+. +..+...+|.+.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~- 96 (393)
T TIGR01822 21 ERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFL- 96 (393)
T ss_pred ccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh-
Confidence 67788999999998899999999999 899996 99999999999987 33221 22455678888888888
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.+++++++||++|+..++... ..+++.|++.+ ..|......+...+. ..+.++++|+
T Consensus 97 g~~~~ii~~~~~~a~~~~~~~l--~~~gd~vi~~~-~~~~s~~~~~~~~~~-------------------~~~~~~~~d~ 154 (393)
T TIGR01822 97 GTEDTILYASCFDANGGLFETL--LGAEDAIISDA-LNHASIIDGVRLCKA-------------------KRYRYANNDM 154 (393)
T ss_pred CCCcEEEECchHHHHHHHHHHh--CCCCCEEEEec-cccHHHHHHHHhcCC-------------------ceEEeCCCCH
Confidence 4567888899999999887732 33455555544 444433333332221 1233456799
Q ss_pred HHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCC--
Q 011856 234 SALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVT-- 306 (476)
Q Consensus 234 ~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~-- 306 (476)
++|++.+++. +.++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ .....+..+..++.
T Consensus 155 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~ 230 (393)
T TIGR01822 155 ADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGR 230 (393)
T ss_pred HHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCC
Confidence 9999999752 226788999999999999988 999999999999999999999 455 22112233344443
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (476)
+|++ ++||+++ |+|+||+++++++++.+.+....+.. +.+.++..++++.++++.++. ++..++++++.+++++.
T Consensus 231 ~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 308 (393)
T TIGR01822 231 VDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLF-SNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRER 308 (393)
T ss_pred CeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCcccee-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 5666 7999987 57999999999999887642222222 123356667778888887754 56788899999999998
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEE--eCC
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLA 454 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~--~~~ 454 (476)
|++.. ..+ ..+.+.++.+.+. +.....++.+.|+++||++....+ ..+|+ +..
T Consensus 309 L~~~g--~~~---~~~~~~~~~i~~~-------------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~ 370 (393)
T TIGR01822 309 MEAAG--FDI---KPADHPIIPVMLY-------------DAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAA 370 (393)
T ss_pred HHHcC--CCC---CCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCC
Confidence 87742 211 1223445554432 112346788999999999874321 23554 678
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 011856 455 HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~ 474 (476)
+|++||++++++|+++++++
T Consensus 371 ~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 371 HTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=261.62 Aligned_cols=342 Identities=23% Similarity=0.268 Sum_probs=240.6
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~ 153 (476)
+..+++++|.++||.+|++||||.++ +++|+ .+|++.+++.+++++. ..+ .+..+++.+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g 101 (397)
T PRK06939 25 ERVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101 (397)
T ss_pred cccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence 34678999999999999999999987 77899 6999999999998762 211 1245778899999999885
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
.. +.+++++|++++..+++.. ..+++.|++.++.|.+. ...+...+. +++.++++|+
T Consensus 102 ~~-~~i~~tsG~~a~~~~~~~l--~~~gd~vi~~~~~~~~~-~~~~~~~~~-------------------~~~~~~~~d~ 158 (397)
T PRK06939 102 TE-DAILYSSCFDANGGLFETL--LGKEDAIISDALNHASI-IDGVRLCKA-------------------KRYRYANNDM 158 (397)
T ss_pred CC-cEEEEcChHHHHHHHHHHh--CCCCCEEEEEhhhhHHH-HHHHHhcCC-------------------ceEEeCCCCH
Confidence 44 4455555799999988742 34456666666555443 222222222 2344455689
Q ss_pred HHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-c-ccccchhhccCC--
Q 011856 234 SALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV-- 305 (476)
Q Consensus 234 ~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r-~g~~~~~~~~g~-- 305 (476)
+++++.+++. ..++++|+++++++++|.+.+ +++|.++|++||++||+||+|. |+ . .+. +....+++
T Consensus 159 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~ 233 (397)
T PRK06939 159 ADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-GTVEHFGVMD 233 (397)
T ss_pred HHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-CHHHHcCCCC
Confidence 9999988642 225788888889998888776 9999999999999999999994 55 2 232 23344455
Q ss_pred CCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011856 306 TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 306 ~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (476)
.+|++ ++||+++ |+|+||+++++++++.+......+.. +.+.++..++++.++++.+.+ +++.++++++.+++++
T Consensus 234 ~~~i~~~S~sK~~~-g~r~G~v~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 311 (397)
T PRK06939 234 RVDIITGTLGKALG-GASGGYTAGRKEVIDWLRQRSRPYLF-SNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE 311 (397)
T ss_pred CCcEEEEECHHHhC-ccCceEEEeCHHHHHHHHHhCccccc-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34666 7999996 45999999999999888642211111 123456667778888887755 5677888888888888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEE--eC
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SL 453 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~--~~ 453 (476)
.|++... .. ..+.+.++.+.+. +.....++++.|+++||.+.+.. ...+|+ +.
T Consensus 312 ~L~~~~~--~~---~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~ 373 (397)
T PRK06939 312 GMTAAGF--TL---GPGEHPIIPVMLG-------------DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA 373 (397)
T ss_pred HHHHcCC--Cc---CCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence 8877521 11 2234555544432 11234678899999999887532 134665 45
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++++++++++|+++++++
T Consensus 374 ~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 374 AHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=237.60 Aligned_cols=337 Identities=20% Similarity=0.255 Sum_probs=255.3
Q ss_pred CeEEEeecCCEEEEcCC--CEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhh
Q 011856 82 PIVFDSVKGSHMWDIDG--NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISA 151 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG--~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~ 151 (476)
..++.+.+|..+. ++| +++|+|++| ||||. +||+|.+|..++++. |... -++...+..|..+++++
T Consensus 49 erVi~s~q~p~i~-v~G~~k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqf 124 (417)
T KOG1359|consen 49 ERVITSRQGPTIQ-VKGSDKKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQF 124 (417)
T ss_pred eeEEeecccceEE-Eeccccceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHH
Confidence 5688899999886 666 579999999 99999 699999999999987 3211 13567888999999998
Q ss_pred CCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 152 VPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 152 ~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
+ +.|+.++++|+.+||..++. +...+.+-|..|...|.+....+.+. .+..+-
T Consensus 125 h-~rED~ilypscfdANag~fe---ail~pedAvfSDeLNhASIIdGirLc-----------------------kry~h~ 177 (417)
T KOG1359|consen 125 H-GREDTILYPSCFDANAGAFE---AILTPEDAVFSDELNHASIIDGIRLC-----------------------KRYRHV 177 (417)
T ss_pred h-CCCceEEeccccccchHHHH---HhcChhhhhhccccccchhhhhhHHH-----------------------hhhccc
Confidence 8 78899999999999999998 44455555566777887543322211 122334
Q ss_pred CHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCC--C
Q 011856 232 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (476)
Q Consensus 232 d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (476)
|+-++|..+.+ .+-+.++|+++.++++.|++.| |++|.+|++|||++|++||.| ||| .....+..|.+|+ +
T Consensus 178 dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~ 253 (417)
T KOG1359|consen 178 DVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGD 253 (417)
T ss_pred hhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCc
Confidence 77777766653 2336889999999999999999 999999999999999999999 888 6656777888886 4
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (476)
+|++ |+||++|| --.||..++.++++.+++..+.+.+++ +.+|.....+.++++.+-. .....+.+.+.+++++.
T Consensus 254 vdiinsTLgKAlGg-a~GGyttgp~~li~llrqr~RpylFSn-slppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~ 331 (417)
T KOG1359|consen 254 VDIINSTLGKALGG-ASGGYTTGPKPLISLLRQRSRPYLFSN-SLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF 331 (417)
T ss_pred ceehhhhhhhhhcC-CCCCCccCChhHHHHHHhcCCceeecC-CCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6665 89999984 246778999999999988777777665 5566566666777776554 77888889999999988
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce---------EEeCC
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG---------FTSLA 454 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~---------~~~~~ 454 (476)
++..+....- ....+..+. ..|...+..+++.|+++|+++....++.+ .++..
T Consensus 332 me~aGftIsg-----~~hPI~pv~-------------lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAa 393 (417)
T KOG1359|consen 332 MEAAGFTISG-----ASHPICPVM-------------LGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAA 393 (417)
T ss_pred HHhcCceecC-----CCCCcccee-------------cccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehh
Confidence 8765322110 001122222 24667788999999999999877665532 45899
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~ 473 (476)
||+||||++++++.++.+.
T Consensus 394 Ht~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 394 HTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988753
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=260.14 Aligned_cols=328 Identities=19% Similarity=0.211 Sum_probs=235.4
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
+|+++++|.++ +|+|. +||++++++.+++++. .. +....+...+|+++++++++ .+..++++||++|+
T Consensus 44 ~~~~~~~~~sn---~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g-~~~~i~~~sG~~a~ 119 (410)
T PRK13392 44 GPRRVTIWCSN---DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG-KESALLFTSGYVSN 119 (410)
T ss_pred CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC-CCCEEEECcHHHHH
Confidence 57899999998 99999 6999999999999873 21 11233467799999999996 46777888899999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (476)
..+++..... .++++|+.+..+|+.....+...|. ++..++++|.+++++.++... +++
T Consensus 120 ~~~i~~l~~~-~~g~~vi~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~t 179 (410)
T PRK13392 120 DAALSTLGKL-LPGCVILSDALNHASMIEGIRRSGA-------------------EKQVFRHNDLADLEEQLASVDPDRP 179 (410)
T ss_pred HHHHHHHhcC-CCCCEEEEehhhhHHHHHHHHHcCC-------------------eEEEEeCCCHHHHHHHHHhccCCCC
Confidence 9999843211 2235666677788766544433332 233446678888888886532 367
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCC--CCchh--hhhhhcCCCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pDi~--t~sK~lg~G~ 320 (476)
++|+++++++++|.+.+ +++|.++|++||++||+||+|+ |+ ..|.. ..++.++ .+|++ ||||++|.
T Consensus 180 ~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~~div~~tlsK~~g~-- 252 (410)
T PRK13392 180 KLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGG-IAERDGLMDRIDMIQGTLAKAFGC-- 252 (410)
T ss_pred EEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hhhhccCCCCCcEEEEEChHhhhc--
Confidence 89999999999999998 9999999999999999999996 65 33332 2344454 35666 89999973
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+.||+++++++++.++.....+.+ +.+.+|+.++++.++|+.++. ....++++++.+++++.|++++. .+ .++
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~---~~~ 326 (410)
T PRK13392 253 LGGYIAASADLIDFVRSFAPGFIF-TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGI--PV---MPS 326 (410)
T ss_pred ccchhhcCHHHHHHHHHhCcchhc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC--CC---CCC
Confidence 337888899999877643333333 445678889999999998765 44556778888888888887532 21 134
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCC-------cceEEe--CCCcHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-------~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
.+.++.+.+. +.....++.+.|+ ++||++.+..+ ..+|++ +.+|++|+|+++++|++
T Consensus 327 ~~~~~~i~~~-------------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~ 393 (410)
T PRK13392 327 PSHIVPVMVG-------------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA 393 (410)
T ss_pred CCCEEEEEeC-------------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 5556555442 1123457888887 67999987532 246664 57999999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 394 ~~~~~ 398 (410)
T PRK13392 394 IWDRL 398 (410)
T ss_pred HHHHc
Confidence 88764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=245.58 Aligned_cols=332 Identities=20% Similarity=0.273 Sum_probs=232.1
Q ss_pred EEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCC
Q 011856 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIE 156 (476)
Q Consensus 85 ~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e 156 (476)
.+++.|.++. .+|++||||.+| +++|+ .+|++.+++.+++.+ +..+ ....+...++++.+++++. .+
T Consensus 3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-~~ 77 (360)
T TIGR00858 3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-TE 77 (360)
T ss_pred cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-CC
Confidence 4578999997 899999999998 78997 789999999999876 2211 1124667789999998884 34
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
..+++++|++++..+++. +.++++.|+....+|......+...+. ++..++..|+++|
T Consensus 78 ~~i~~~~G~~~~~~~l~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l 135 (360)
T TIGR00858 78 AALLFSSGYLANVGVISA---LVGKGDLILSDALNHASLIDGCRLSGA-------------------RVRRYRHNDVEHL 135 (360)
T ss_pred CEEEECchHHHHHHHHHH---hCCCCCEEEEEccccHHHHHHHHhcCC-------------------ceEEecCCCHHHH
Confidence 556666788998887763 334444444445555554444433332 2334455689999
Q ss_pred HHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc-c-cchhhccCCCCc-----
Q 011856 237 ENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-Y-GGAQEYFGVTPD----- 308 (476)
Q Consensus 237 e~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g-~-~~~~~~~g~~pD----- 308 (476)
++.++++. .++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.+..+ . ......+++.++
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 211 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQ 211 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEE
Confidence 99997543 35788899999888898888 999999999999999999999633221 1 222344555544
Q ss_pred hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH
Q 011856 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 309 i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+.++||++++ +.||+++++++++.+....... ..+.+.++..++++.++++.+.. ++..++++++.+++.+.|+++
T Consensus 212 i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 212 VGTLSKALGS--YGAYVAGSQALIDYLINRARTL-IFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred EEechhhhhc--cCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 4489999985 4489999999988775322211 12234567778888889987655 467788899999999998874
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEeC--CCcHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSD 458 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~~--~~t~e 458 (476)
. ..+ ....+.++++.+.. .....++++.|+++||++.++. ...+|+++ .++++
T Consensus 289 ~--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~ 350 (360)
T TIGR00858 289 G--FTL---MPSCTPIVPVIIGD-------------NASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG 350 (360)
T ss_pred C--Ccc---CCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence 2 111 23456677777632 1223578899999999997532 23567754 46999
Q ss_pred HHHHHHHHHH
Q 011856 459 DIQHTITAAE 468 (476)
Q Consensus 459 ~i~~~~~~l~ 468 (476)
|+++++++|+
T Consensus 351 ~i~~~l~~l~ 360 (360)
T TIGR00858 351 DIDRLAEALK 360 (360)
T ss_pred HHHHHHHhhC
Confidence 9999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=231.97 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=245.4
Q ss_pred ccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 105 VGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 105 ~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
++| +|||. .||+|.+|+.+.+++ |... .+++....+|.+.|++++ ..|..++++|+.-||+..+...
T Consensus 177 CSN---DYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH-qK~aALlFsSCfVANDstLftL- 251 (570)
T KOG1360|consen 177 CSN---DYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH-QKEAALLFSSCFVANDSTLFTL- 251 (570)
T ss_pred ecC---ccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh-cCcceeeeeeeeeccchHHHHH-
Confidence 677 89999 599999999999998 3222 246777888888888888 6788888899999999988743
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC-eEEEEEccc
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPV 255 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-~a~vi~ep~ 255 (476)
+-.-++.+|..|...|.+....+..+ ..+.+.+.|||+++|+++|+..+.. .+.|-.|.+
T Consensus 252 ak~lpgcei~SD~gNHASMI~GIrns-------------------~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtV 312 (570)
T KOG1360|consen 252 AKKLPGCEIFSDEGNHASMIQGIRNS-------------------RVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETV 312 (570)
T ss_pred HHHCCCcEEeccccchHHHHHHhhhc-------------------CCcceeeccCCHHHHHHHHHhCCCCCCceEEEeee
Confidence 11235567777888888654443222 2246788999999999999876544 577888999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCC--CCchh--hhhhhcCCCCcEEEEEecH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~pDi~--t~sK~lg~G~~iG~~~~~~ 329 (476)
+++.|.+.| |++|++++++||++-.+|||| .|+ +..+.+.-++-|+ +.||+ |++|+||. -.||+.++.
T Consensus 313 hSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc--VGGYIAat~ 386 (570)
T KOG1360|consen 313 HSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC--VGGYIAATR 386 (570)
T ss_pred eccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc--ccceehhhh
Confidence 999999999 999999999999999999999 687 5544555677777 45787 79999986 346678889
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
.+++.++...+.+++.| +.+|..++.|++++++++. ..++..-+++..++++.|.+++ +|++ +....++.+
T Consensus 387 ~LvDmiRSyAaGFIFTT-SLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~G--iPVi---~~pSHIiPv 460 (570)
T KOG1360|consen 387 KLVDMIRSYAAGFIFTT-SLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELG--IPVI---PNPSHIIPV 460 (570)
T ss_pred hHHHHHHHhcCceEEec-CCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcC--Cccc---CCCcceeee
Confidence 99999997777888865 8899999999999998875 3466667778888888887763 2322 122223333
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcc-------eEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-------GFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~-------~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+ .+.....++...|+ ++||++....++. +|+ ...||++.++.+++.+..++.++
T Consensus 461 ~v-------------gda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 461 RV-------------GDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred ec-------------cCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 33 35566677777776 6799998776554 355 57889999999999999998875
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=242.36 Aligned_cols=329 Identities=19% Similarity=0.238 Sum_probs=228.0
Q ss_pred cCCCEEEecccChhhccCCCC--cHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHA--DDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTE 166 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e~v~~~~sGse 166 (476)
.+++++|||.++ +|||.+ ++.+.+++.+++++ +... +.+.....++.+.++++++ .+..+++++|+.
T Consensus 97 ~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-~~~ai~~~~G~~ 172 (489)
T PLN02483 97 TKTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-KPAAIVFGMGYA 172 (489)
T ss_pred CCCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-CCcEEEECCHHH
Confidence 467899999999 999995 57788888888876 3211 2357788899999999985 455666677999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--- 243 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 243 (476)
++..++.. +.++++.|+.+...|......+...|. .+..++++|++++++.+++.
T Consensus 173 an~~~i~a---l~~~Gd~Vi~d~~~h~s~~~~~~~~Ga-------------------~v~~~~~~d~~~le~~l~~~i~~ 230 (489)
T PLN02483 173 TNSTIIPA---LIGKGGLIISDSLNHNSIVNGARGSGA-------------------TIRVFQHNTPSHLEEVLREQIAE 230 (489)
T ss_pred HHHHHHHH---hCCCCCEEEEcchhhHHHHHHHHHcCC-------------------eEEEEeCCCHHHHHHHHHhhhhc
Confidence 99887773 344444455555555544444333332 46677888999998887631
Q ss_pred -------CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCC---chh-
Q 011856 244 -------KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTP---DLT- 310 (476)
Q Consensus 244 -------~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~p---Di~- 310 (476)
+....+|++|+++++.|.+.+ +++|.++|++||++||+||+|+ |. +....+..+++++.| |++
T Consensus 231 ~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~ 306 (489)
T PLN02483 231 GQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMM 306 (489)
T ss_pred cccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEE
Confidence 112358888999999999998 9999999999999999999995 33 222233556777654 555
Q ss_pred -hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Q 011856 311 -TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-------GTYEYLNKITGELTQ 382 (476)
Q Consensus 311 -t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-------~~~~~~~~~~~~l~~ 382 (476)
||||++|+ +.||+++++++++.++.......+++ +.+|..++++.++|+.+..+ +..++++++.+++++
T Consensus 307 ~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~~~-~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~ 383 (489)
T PLN02483 307 GTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLYAT-SMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRS 383 (489)
T ss_pred Eecchhccc--CceEEEcCHHHHHHHHHhCccccccC-CcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 89999984 35899999999999874222111222 34667777788888876421 346678888888888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEE--eC
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SL 453 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~--~~ 453 (476)
.|++++ +.......+.++++.+.. .....++.+.|+++||.+.+.++ ..+|+ +.
T Consensus 384 ~L~~~G----~~v~~~~~sp~~~l~l~~-------------~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa 446 (489)
T PLN02483 384 ELQKMG----FEVLGDNDSPVMPIMLYN-------------PAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISA 446 (489)
T ss_pred HHHHCC----CcccCCCCCCEEEEEECC-------------HHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCC
Confidence 888752 211111223455555421 12345788999999999986543 23454 56
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|+|||++++++|+++++.+
T Consensus 447 ~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 447 SHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999987754
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=239.93 Aligned_cols=335 Identities=18% Similarity=0.179 Sum_probs=231.6
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 170 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~-v~~~~sGseA~~~ 170 (476)
..+||+..| .+--..++.+.+++.+++.++. +|+ +..++++.+++++.+.++ .+++ |++|+|+++|+..
T Consensus 28 ~~vi~l~iG---~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIG---EPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCC---CCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 357787777 5544578899999999998863 333 234667777777777764 3444 9999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC-CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
++.. ...+++.||+.++.|-.+........+. +...++... .++. -|++.|++.++. ++++
T Consensus 105 ~~~a--~~~pGDeVlip~P~Y~~y~~~~~~~gg~-~v~v~l~~~~~~f~------------~d~~~l~~~i~~---ktk~ 166 (393)
T COG0436 105 AFLA--LLNPGDEVLIPDPGYPSYEAAVKLAGGK-PVPVPLDEEENGFK------------PDLEDLEAAITP---KTKA 166 (393)
T ss_pred HHHH--hcCCCCEEEEeCCCCcCHHHHHHhcCCE-EEEEeCCcCccCCc------------CCHHHHHhhcCc---cceE
Confidence 9984 3456678999999998755444444343 222221000 1111 179999999985 6778
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-c-chhhccCC---CCchhhhhhhcC-CCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-G-GAQEYFGV---TPDLTTLGKIIG-GGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~-~~~~~~g~---~pDi~t~sK~lg-~G~~i 322 (476)
|+++..+|++|.+.+. ++|++|.++|++||++||+||+|.+| ..+. . ...+..+. ..-+-+|||.++ .|||+
T Consensus 167 i~ln~P~NPTGav~~~-~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv 245 (393)
T COG0436 167 IILNSPNNPTGAVYSK-EELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI 245 (393)
T ss_pred EEEeCCCCCcCcCCCH-HHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence 8887777778877654 45999999999999999999999999 7663 2 22222221 112337999999 89999
Q ss_pred EEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 323 GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 323 G~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
||++++ +++++.+. ......+++.+.++|.++.++|+.-++ +...+.++++++.+.+.|.++. ++....
T Consensus 246 G~~v~~~~~l~~~~~---~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~---g~~~~~ 319 (393)
T COG0436 246 GWVVGPPEELIAALR---KLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG---GLSVVK 319 (393)
T ss_pred eEeecChHHHHHHHH---HHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC---Ceeecc
Confidence 999998 88888776 344556778899999999999974421 2233456666666666666542 122222
Q ss_pred ee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC-------CcceEEeCCCcHHHHHHHHHHHH
Q 011856 398 GY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 398 ~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
.. .+.++++.+... ....+|+..|++ .||.+.|+. .+++|+++..+++++++++++++
T Consensus 320 ~p~Ga~Y~~~~i~~~-------------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~ 386 (393)
T COG0436 320 PPEGAFYLFPKIPEL-------------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLA 386 (393)
T ss_pred CCCeeEEEEeecCCC-------------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHH
Confidence 13 444445544321 113577877775 589999962 24689999999999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+.+...
T Consensus 387 ~~~~~~ 392 (393)
T COG0436 387 RFLAEY 392 (393)
T ss_pred HHHHhc
Confidence 988753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=233.33 Aligned_cols=337 Identities=17% Similarity=0.141 Sum_probs=222.7
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~-~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
+.++||+..+. +.++ .++.+.+++.+.+..+....|+ .....++.+.++++++ ..+++++++|+++++..+++..
T Consensus 27 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~ 103 (380)
T PRK06225 27 DKEMIWMGQNT--NHLG-PHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAF 103 (380)
T ss_pred cCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh
Confidence 45678877663 4444 6899999999988764222232 3345678888888876 5679999999999999999852
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC-CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
...++.|++.+++|+.. ...+...|..+...+..... +. .-|++++++.+.. +++++++..
T Consensus 104 --~~~gd~vl~~~p~y~~~-~~~~~~~g~~~~~v~~~~~~~~~------------~~d~~~l~~~~~~---~~~~v~l~~ 165 (380)
T PRK06225 104 --LSPGDNAVTPDPGYLII-DNFASRFGAEVIEVPIYSEECNY------------KLTPELVKENMDE---NTRLIYLID 165 (380)
T ss_pred --cCCCCEEEEcCCCCcch-HHHHHHhCceEEeeccccccCCc------------cCCHHHHHhhcCC---CceEEEEeC
Confidence 23456788888888753 34444445543332211000 00 0178889888763 455555443
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhc-cCCCCchhhhhhhcC-CCCcEEEEEecHHHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~-~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
.++++|.+.+ .+.+++|.++|++||+++|+||+|.+|..+....... .....++.+|||.+| +|+|+||++++++++
T Consensus 166 p~NptG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~ 244 (380)
T PRK06225 166 PLNPLGSSYT-EEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLI 244 (380)
T ss_pred CCCCCCcCCC-HHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHH
Confidence 3556777765 4459999999999999999999998772221111111 011223558999998 799999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CC-ceEeeeeceeEEEEEec
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GH-AICGGYISGMFGFFFTE 410 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~-~~~v~~~g~~~~i~~~~ 410 (476)
+.+... ...+++.|.+++.++.++|+.. +++.+++++..+..++.+.+...++ +. ....+..|.++++.+..
T Consensus 245 ~~~~~~----~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 318 (380)
T PRK06225 245 EVVKSI----VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISE 318 (380)
T ss_pred HHHHHH----HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccc
Confidence 887631 2245677888888888877632 3444555444444344444333332 21 12234567888888743
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
... ...++.+.|.++||.+.++. ...+|+++..+++++++++++|+++++++
T Consensus 319 ~~~------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~ 377 (380)
T PRK06225 319 AGI------------DPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETL 377 (380)
T ss_pred ccC------------CHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 211 12568888889999998852 23678888889999999999999998764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=230.98 Aligned_cols=318 Identities=17% Similarity=0.174 Sum_probs=220.8
Q ss_pred CCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc--------CCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeC
Q 011856 98 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG--------TSFG------APCLLENVLAEMVISAVPSIEMVRFVN 162 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~--------~~~~------~~~~~~~~la~~l~~~~~~~e~v~~~~ 162 (476)
..+++||.++ +|||+ .+|.+.+++.+++.+. .+.+ ...+...++.+.+++++ +.+.+++++
T Consensus 3 ~~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~-~~~~~l~~~ 78 (370)
T PRK05937 3 ESLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFH-GAPEAFIVP 78 (370)
T ss_pred CCceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHh-CCCeEEEEC
Confidence 3468999999 99999 5999999999988763 2221 14577889999999988 456778899
Q ss_pred CHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
||+.|+...+. .+.+++++|+.+..+|++....+.... + ....++++|+++|+++++.
T Consensus 79 sG~~a~~~~~~---~~~~~~d~ii~d~~~H~sv~~~~~~~~------------~-------~~~~~~~~d~~~l~~~l~~ 136 (370)
T PRK05937 79 SGYMANLGLCA---HLSSVTDYVLWDEQVHISVVYSLSVIS------------G-------WHQSFRHNDLDHLESLLES 136 (370)
T ss_pred ChHHHHHHHHH---HhCCCCCEEEEEhhhhHHHHHHHHHcC------------C-------ceEEecCCCHHHHHHHHHh
Confidence 99999976544 455677899999999987766554321 1 1345678899999999974
Q ss_pred CC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccC---CCCchhhhh
Q 011856 243 NK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG---VTPDLTTLG 313 (476)
Q Consensus 243 ~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g---~~pDi~t~s 313 (476)
.. +++.+|+++++++++|.+.| +++|.++|+++|++||+||+|+ |. ..+..+. ..++ ..+|+.|||
T Consensus 137 ~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tls 211 (370)
T PRK05937 137 CRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYS 211 (370)
T ss_pred hhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEech
Confidence 31 34567889999999999999 9999999999999999999995 54 4443222 2223 235678999
Q ss_pred hhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--GTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 314 K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|++|+ +.+++++.+++.+.+......+.+ +.+.++++++++.++++.+.+. ...++++++.+++++.|...
T Consensus 212 K~~g~--~G~~vl~~~~~~~~~~~~~~~~~~-s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~---- 284 (370)
T PRK05937 212 KALGS--MGAALLSSSEVKQDLMLNSPPLRY-STGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA---- 284 (370)
T ss_pred hhhhc--CceEEEcCHHHHHHHHHhCCCCee-cCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC----
Confidence 99984 234456667765554421122222 3356788888888999888652 34556666666666554321
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEe--CCCcHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~--~~~t~e~i~~~~~~ 466 (476)
. .+....+.+.. .....+.+.|.++||++.... .+.+|++ ..+|++|+|++++.
T Consensus 285 ~-------~~~~~~i~~~~--------------~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~ 343 (370)
T PRK05937 285 A-------PGCVQPIFLPG--------------ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSV 343 (370)
T ss_pred C-------CCCEEEEEeCC--------------hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 0 11122233321 112567888899999887432 2346775 56899999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|+++++++
T Consensus 344 L~~~~~~~ 351 (370)
T PRK05937 344 LATYLEKY 351 (370)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=235.13 Aligned_cols=321 Identities=14% Similarity=0.132 Sum_probs=214.5
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCCCCC----HHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPC----LLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~~~~----~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
..+|+..|. ++++ .+|.+.+++.+.+... ....|+. ++++.+++++.+..+ .+++|++++|+++++..
T Consensus 27 ~~i~l~~~~--~~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNE--NPYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 368887774 3444 7899999999887541 1223443 344555555544433 57899999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ...++.|++..++|+++... ....|..+...+.....++ |++++++.++++ +++++
T Consensus 104 ~~~~~--~~~gd~v~v~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~~~~~--~~~~i 164 (368)
T PRK03317 104 LLQAF--GGPGRTALGFVPSYSMHPII-ARGTHTEWVEGPRAADFTL--------------DVDAAVAAIAEH--RPDVV 164 (368)
T ss_pred HHHHh--cCCCCEEEEeCCChHHHHHH-HHhcCCeeEEcccCCCCCC--------------CHHHHHHHHhcc--CCCEE
Confidence 99842 24567788889999875433 2333332222111101111 789999998753 34455
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAY 325 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~ 325 (476)
+++..+|++|.+.+ .+++++||+.++++||+||+|.+| +.+........+..|+++ ||||++| +|+|+||+
T Consensus 165 ~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~ 240 (368)
T PRK03317 165 FLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240 (368)
T ss_pred EEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence 55556778899998 777888888889999999999988 555444444445556766 8999998 79999999
Q ss_pred EecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 326 ~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
++++++++.+.... .+++.++++++++.++|+..+. .+..++++++.+.+.+.|++ +++. ...+.|.++
T Consensus 241 ~~~~~~~~~l~~~~-----~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~ 310 (368)
T PRK03317 241 AAAPAVVDALRLVR-----LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE----LGLR-VAPSDANFV 310 (368)
T ss_pred hCCHHHHHHHHhcC-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCE-eCCCCCcEE
Confidence 99999999887321 3577889999999988864322 22233344444444444443 3332 223445554
Q ss_pred EE-EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 405 GF-FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 405 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+ .+. + ..++.+.|+++||++.+.+. +.+|+++. +++++++++++|+++++.
T Consensus 311 ~~~~~~-------------~---~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~-~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 311 LFGRFA-------------D---RHAVWQGLLDRGVLIRDVGIPGWLRVTIG-TPEENDAFLAALAEVLAT 364 (368)
T ss_pred EEeccC-------------C---HHHHHHHHHHCCEEEEeCCCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 43 221 1 25688899999999988654 46788765 778999999999998764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=227.95 Aligned_cols=333 Identities=14% Similarity=0.070 Sum_probs=217.3
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~al 172 (476)
.|+|..+. ..++ .++.+.+++.+.++.. ..|. +..+++.++++++.+.++ .++ +|++++|+++|+..++
T Consensus 22 ~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 98 (378)
T PRK07682 22 VISLGVGE--PDFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM 98 (378)
T ss_pred eEEeCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH
Confidence 57777664 2344 4667888888877653 2222 234677788888876543 344 7999999999999998
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ..+++.|++.+++|+.... .....|..+...+....... .-|+++|++.+.+ +++++++
T Consensus 99 ~~l--~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~v~~ 160 (378)
T PRK07682 99 RAI--INPGDEVLIVEPSFVSYAP-LVTLAGGVPVPVATTLENEF------------KVQPAQIEAAITA---KTKAILL 160 (378)
T ss_pred HHh--CCCCCEEEEeCCCchhhHH-HHHHcCCEEEEeecCCccCC------------CCCHHHHHhhcCc---ccEEEEE
Confidence 842 3456788999999986433 33333433322211100000 0178999988864 4566655
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccCCCCc---hhhhhhhcC-CCCcEEEEE
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPD---LTTLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pD---i~t~sK~lg-~G~~iG~~~ 326 (476)
+..+|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+.... ....+..+. +.+|||.++ +|+|+||++
T Consensus 161 ~~p~NPtG~~~s-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~ 239 (378)
T PRK07682 161 CSPNNPTGAVLN-KSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIA 239 (378)
T ss_pred ECCCCCcCcCcC-HHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhh
Confidence 444667777665 455999999999999999999999888 5432211 122222222 337999999 899999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
+++++++.+.. .....+++.+++++.++.++|+.... +..+++++++.+++.+.|++. ++....+..|.++
T Consensus 240 ~~~~~i~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~p~g~~~~ 312 (378)
T PRK07682 240 APVYFSEAMLK---IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI----GLTCHVPGGAFYA 312 (378)
T ss_pred cCHHHHHHHHH---HHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC----CCccCCCCeeEEE
Confidence 99999998863 22234456788888888888853211 233455566666666666654 3322223344555
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+..... ...++.+.++ ++||.+.|+. .+++|+++..+++++++++++|+++++++
T Consensus 313 ~~~~~~~~~------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 313 FPSISSTGL------------SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred EEeccCCCC------------CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 555532110 1256777776 6899999862 34688998889999999999999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=208.90 Aligned_cols=348 Identities=16% Similarity=0.131 Sum_probs=243.5
Q ss_pred EeecCCEEEEcCC--CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhCC---CCCe
Q 011856 86 DSVKGSHMWDIDG--NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP---SIEM 157 (476)
Q Consensus 86 ~~~~G~~~~d~dG--~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~~---~~e~ 157 (476)
.++..+.-||..+ ..+|=+. -+..---.+|+|.+|+.+.+++|. |||+ .++..++..+.++.+. .++.
T Consensus 10 r~~t~s~KWd~~~g~~DvlPmW---VADMDf~~pp~i~~Al~~rvdhGv-fGY~~~~~~~~~ai~~w~~~r~~~~i~~e~ 85 (388)
T COG1168 10 RLGTNSLKWDAHPGNEDVLPMW---VADMDFPTPPEIIEALRERVDHGV-FGYPYGSDELYAAIAHWFKQRHQWEIKPEW 85 (388)
T ss_pred hcCCCceeccccCCCCCcceee---eecccCCCCHHHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCcce
Confidence 3566777788665 3444333 224444479999999999999974 4443 4578889999998876 5789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccC-CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
++|+++.--++..+++ .+|+ ++.|++..+.|+. ...+....|..+...++....+ .+.+ |+++|
T Consensus 86 i~~~p~VVpgi~~~I~---~~T~~gd~Vvi~tPvY~P-F~~~i~~n~R~~i~~pL~~~~~--------~y~i---D~~~L 150 (388)
T COG1168 86 IVFVPGVVPGISLAIR---ALTKPGDGVVIQTPVYPP-FYNAIKLNGRKVIENPLVEDDG--------RYEI---DFDAL 150 (388)
T ss_pred EEEcCcchHhHHHHHH---HhCcCCCeeEecCCCchH-HHHHHhhcCcEEEeccccccCC--------cEEe---cHHHH
Confidence 9999999999999999 6775 5667777888876 4455556666554433321111 2222 89999
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-ccchhhccCCCCc-----h
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVTPD-----L 309 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~~~~g~~pD-----i 309 (476)
|+.+.+. +++++|++..+|++|.++..++ |.+|.+||.+||++||+||+|..+ ..| .+... ..+.++ +
T Consensus 151 E~~~~~~--~vkl~iLCnPHNP~Grvwt~ee-L~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~--a~ls~~~a~~~i 225 (388)
T COG1168 151 EKAFVDE--RVKLFILCNPHNPTGRVWTKEE-LRKIAELCLRHGVRVISDEIHADLVLGGHKHIPF--ASLSERFADNSI 225 (388)
T ss_pred HHHHhcC--CccEEEEeCCCCCCCccccHHH-HHHHHHHHHHcCCEEEeecccccccccCCCccch--hhcChhhhcceE
Confidence 9999863 5666666666677888776555 999999999999999999999999 655 33332 223332 2
Q ss_pred h--hhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Q 011856 310 T--TLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQG 383 (476)
Q Consensus 310 ~--t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~ 383 (476)
+ +-||+|+ +|+.+++++. ++++.+.+.+ ++...+..+.|.+++.|..++++.-+. +++.+.++.+.+++.+.
T Consensus 226 t~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~--~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~ 303 (388)
T COG1168 226 TLTSASKTFNLAGLKCAYIIISNRELRAKFLK--RLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADF 303 (388)
T ss_pred EEeeccccccchhhhheeEEecCHHHHHHHHH--HHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 2 3579999 8999999855 5666444432 222334457799999999999987665 78888999999999998
Q ss_pred HHHHhhhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccC------CCcceEEeCCC
Q 011856 384 IIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS------QFEAGFTSLAH 455 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~~~~~~~~ 455 (476)
|++. .|.+......|. ++|+++..-... + .++.+.|+++ +|.+.++ +.+.+|+++++
T Consensus 304 l~~~---~P~v~v~~p~gTYL~WLD~r~l~l~--------d----~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac 368 (388)
T COG1168 304 LNKH---LPGVKVTEPQGTYLAWLDCRELGLD--------D----SELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC 368 (388)
T ss_pred HHhh---CCCcEEecCCCceeeeeeccccCCC--------h----HHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC
Confidence 8875 343444445555 466777542211 1 3455555543 5655554 44567999999
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011856 456 SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~ 474 (476)
+++-+++++++|..+++.+
T Consensus 369 pr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 369 PRAILEEALERLKRALKKR 387 (388)
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988753
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=226.99 Aligned_cols=339 Identities=14% Similarity=0.116 Sum_probs=215.8
Q ss_pred EEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHH
Q 011856 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~ 170 (476)
++..|..++++..+ .+.-..++.+ +++.+++.+. ..|+ +.....+|.+.+++++. .+++|++++|+++|+..
T Consensus 21 ~~~~~~~~~~~~~~---e~~~~~~~~~-~~~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 21 YDIAESCIDSLTLE---ELLALAGKNP-EAFYQELGQKKLTYG-WIEGSPEFKEAVASLYQNVKPENILQTNGATGANFL 95 (373)
T ss_pred cccccCCCCCCcHH---HHHhccCcch-HHHHHHHhcCCccCC-CCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHH
Confidence 44555556666555 3333356677 8888887763 2333 22233456666666543 56899999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
++... ...++.|++..++|.... ......|..+...+.....+. .-|++++++.++. ++++|
T Consensus 96 ~~~~l--~~~gd~Vl~~~P~y~~~~-~~~~~~g~~v~~v~~~~~~~~------------~~d~~~l~~~~~~---~~kli 157 (373)
T PRK07324 96 VLYAL--VEPGDHVISVYPTYQQLY-DIPESLGAEVDYWQLKEENGW------------LPDLDELRRLVRP---NTKLI 157 (373)
T ss_pred HHHHh--CCCCCEEEEcCCCchhHH-HHHHHcCCEEEEEecccccCC------------CCCHHHHHHhCCC---CCcEE
Confidence 99842 345677888888876643 333344443332221111111 0178888887753 56677
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchhhhhhhcC-CCCcEEEEEe
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~ 327 (476)
+++..+|++|.+.+.++ +++|.++|++||+++|+||+|.++ ..+... ..+.++....+.+|||.++ +|+|+||+++
T Consensus 158 ~i~~p~NPtG~~~~~~~-l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~ 236 (373)
T PRK07324 158 CINNANNPTGALMDRAY-LEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAA 236 (373)
T ss_pred EEeCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEec
Confidence 77766777888776544 999999999999999999999888 433211 1111111112348999999 8999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec-eeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-GMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-~~~~i 406 (476)
++++++.+.. .....+++.+.+++.++..+|+.. +.+.++.++..+..++.|.+...+++....+...| .++++
T Consensus 237 ~~~li~~~~~---~~~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i 311 (373)
T PRK07324 237 NEEVIDILRK---YRDYTMICAGVFDDMLASLALEHR--DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFV 311 (373)
T ss_pred CHHHHHHHHH---HhCcEEecCChHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEE
Confidence 9999988873 233445677888888888777521 23333433333333344444333443333344444 44555
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+... ....++++.|+ ++||.+.|+. .+++|+++..+++.+++++++|++++++.
T Consensus 312 ~~~~~-------------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 312 KLDVD-------------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred EeCCC-------------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 55321 01256777765 6799999974 24678998889999999999999998764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=223.77 Aligned_cols=331 Identities=16% Similarity=0.115 Sum_probs=219.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
..|||..|. +--..++.+.+++.+.++++ ..|+ +..+++.++++++.+..+ +.+ +|++|+|+++|+..+
T Consensus 55 ~~i~l~~G~---P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGF---PNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCC---CCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 468888773 22224788999998888763 2232 234677778887776543 355 699999999999998
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
++. ....++.|++.+++|..+. ..+...|..+..++... ... -|+++|++.+.. ++++|
T Consensus 132 ~~~--l~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~~~~---~~k~i 191 (413)
T PLN00175 132 ILG--LINPGDEVILFAPFYDSYE-ATLSMAGAKIKTVTLRPPDFA--------------VPEDELKAAFTS---KTRAI 191 (413)
T ss_pred HHH--hCCCCCEEEEeCCCchhHH-HHHHHcCCEEEEEECCcccCC--------------CCHHHHHHhcCc---CceEE
Confidence 884 2355678888888886643 33444454433322210 011 168999988863 46777
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCch---hhhhhhcC-CCCcEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi---~t~sK~lg-~G~~iG~ 324 (476)
++++.+|++|.+.+ ++.+++|.++|++||+++|+||+|..| ..+... ..+..+....+ -+|||.++ +|+|+||
T Consensus 192 ~i~~p~NPtG~~~s-~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~ 270 (413)
T PLN00175 192 LINTPHNPTGKMFT-REELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGW 270 (413)
T ss_pred EecCCCCCCCcCCC-HHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheee
Confidence 77766777888775 555999999999999999999999887 433221 11222222222 37999999 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+.. .....+++.+++.+.++.++|+..+. ++..++++++.+.+.+.|++. ++....+..|.
T Consensus 271 ~v~~~~l~~~l~~---~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~p~g~~ 343 (413)
T PLN00175 271 AIAPPHLTWGVRQ---AHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV----GFKVYPSSGTY 343 (413)
T ss_pred eEeCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCeeE
Confidence 9999999888763 22334577888899998888853211 334455556666666666553 33222233455
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC---------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~---------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
++++.+..... ....++++.|+ ++||.+.|+. .+.+|+++..+++++++++++|.++++
T Consensus 344 f~~~~~~~~~~-----------~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 344 FVMVDHTPFGF-----------ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred EEEEeccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 66666521110 01256778776 5699998862 235788888899999999999998875
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=226.87 Aligned_cols=322 Identities=12% Similarity=0.117 Sum_probs=219.2
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
+++.++|+..|. +++| .+|.+.+++.+.+.... .|+.....+|.+.++++++ .+++|++++|+++++..+++..
T Consensus 27 ~~~~~i~l~~ne--n~~~-~~~~v~~a~~~~~~~~~--~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l 101 (366)
T PRK01533 27 GDHSFVKLASNE--NPFG-CSPRVLDELQKSWLDHA--LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAV 101 (366)
T ss_pred CCCceEEeCCCC--CCCC-CCHHHHHHHHHHHHhcC--cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 356788988875 5666 68889999988766532 3455555677777777775 6889999999999999999842
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..+++.|++.+++|.++.. .....|..+...+.. ..+ -|+++|++.+++ ++++++++..
T Consensus 102 --~~~gd~vlv~~P~y~~~~~-~~~~~g~~v~~v~~~-~~~--------------~d~~~l~~~~~~---~~~~v~i~~P 160 (366)
T PRK01533 102 --LKAGDNIVTAGATFPQYRH-HAIIEGCEVKEVALN-NGV--------------YDLDEISSVVDN---DTKIVWICNP 160 (366)
T ss_pred --cCCCCEEEEcCCcHHHHHH-HHHHcCCEEEEeecC-CCC--------------cCHHHHHHHhCc---CCcEEEEeCC
Confidence 2345678888888877543 334444433322211 001 178999988864 3455555555
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CCCcEEEEEecH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRR 329 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~ 329 (476)
+|++|.+.+.++ +++|.++|++++ ++|+||+|.+| ..+.. .......-.+.++ +|||.+| +|+|+||+++++
T Consensus 161 ~NPTG~~~~~~~-l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~ 238 (366)
T PRK01533 161 NNPTGTYVNDRK-LTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE 238 (366)
T ss_pred CCCCCCCcCHHH-HHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH
Confidence 677888887555 888999998876 57779999877 43211 1111122223333 7999999 899999999999
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
++++.+... ..+++.|.+++.++.++|+ +.++.+++++.....++.+.+.....++. ..++.|.|+++.+.
T Consensus 239 ~~~~~l~~~-----~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~nf~~~~~~ 309 (366)
T PRK01533 239 ELIEKLNVV-----RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIP-FYQSQTNFIFLPVE 309 (366)
T ss_pred HHHHHHHHh-----cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCCCcCcEEEEeCC
Confidence 999988632 1357889999999988884 34455455444444444454444444432 23457888888762
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+ ..++.+.|+++||.+++. .+.+|+++ .+.+++++++++|+++++.
T Consensus 310 ~----------------~~~~~~~l~~~GI~Vr~~-~~~iRis~-~~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 310 N----------------GGEIYEACAHAGFIIRPF-PNGVRITV-GTREQNEGVISVLQQHFEN 355 (366)
T ss_pred C----------------HHHHHHHHHHCCcEEccC-CCceEEeC-CCHHHHHHHHHHHHHHHHh
Confidence 1 146788999999999985 35678874 4789999999999988753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=222.29 Aligned_cols=339 Identities=10% Similarity=0.109 Sum_probs=217.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~---~~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
+..+||..+.. +.+ ..+|.+.+++.+.+.+... |. +..+++.++++++.+.++ .+ ++|++++|+++++.
T Consensus 39 ~~~i~l~~g~~-~~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDV-DAH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCC-CCC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45567775521 222 2568889988888765322 22 234678888888888754 45 89999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ...++.|++.+++|.+.. ..+...|..+..++...... . +-. .-|+++|++.+++ .+++
T Consensus 117 ~~~~~l--~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~v~~v~~~~~~~--~----~~~---~~d~~~l~~~~~~---~~k~ 181 (405)
T PRK06207 117 LAVAAT--VARGDKVAIVQPDYFANR-KLVEFFEGEMVPVQLDYLSA--D----KRA---GLDLDQLEEAFKA---GVRV 181 (405)
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHH-HHHHHcCCEEEEEeccccCc--c----cCC---CcCHHHHHHhhhh---cCeE
Confidence 999842 345678999999998754 33344454433222110000 0 000 0178999998864 3555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCc-h---hhhhhhcC-CCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD-L---TTLGKIIG-GGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pD-i---~t~sK~lg-~G~~i 322 (476)
|+++..+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ....+...+| + .+|||.++ +|+|+
T Consensus 182 v~l~~P~NPTG~~~s~e~-l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRi 260 (405)
T PRK06207 182 FLFSNPNNPAGVVYSAEE-IAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRL 260 (405)
T ss_pred EEECCCCCCCCcCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccce
Confidence 555444677888877555 999999999999999999999887 444221 1111122222 2 37999999 89999
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhc-CCceEeee
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGY 399 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~ 399 (476)
||+++++++++.+... ......+.+.+++.++.++|+.-.. ++..++.+++.+.+.+.|+ ++ ++....+.
T Consensus 261 G~ii~~~~l~~~~~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~p~ 333 (405)
T PRK06207 261 GVAFGSPAIIDRMEKL---QAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLR----GVEGVFVRAPQ 333 (405)
T ss_pred EEEEcCHHHHHHHHHH---HhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh----cCCCceecCCC
Confidence 9999999998888632 1222345566778877777752100 1223333333444444443 33 22222244
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.|.++|+.+..... ...++.+.|+ ++||.+.|+. .+.+|+++..+++++++++++|.++++
T Consensus 334 gg~fl~~~l~~~~~------------~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 334 AGSYLFPRLPRLAV------------SLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIE 401 (405)
T ss_pred eeEEEEEeCcccCC------------CHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 57788888742110 1256788887 6899999864 246789888899999999999999987
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
+.
T Consensus 402 ~~ 403 (405)
T PRK06207 402 RY 403 (405)
T ss_pred Hh
Confidence 64
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=226.36 Aligned_cols=330 Identities=12% Similarity=0.098 Sum_probs=214.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA----PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~----~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
|..++||..|. ..++ .++.+.+++.+.+.+...+++ ..++++.+++++.+..+ .+ ++|++|+|+++++.
T Consensus 31 ~~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~ 107 (399)
T PRK07681 31 GHKMIDLSIGN--PDMP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV 107 (399)
T ss_pred CCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence 45678888773 2233 578899998887765333433 24566777777765432 55 78999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ...++.|++.+++|.++... +...|..+..++.....++ .-|++++++.+.. ++++
T Consensus 108 ~~~~~~--~~~Gd~Vlv~~P~y~~~~~~-~~~~G~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~k~ 169 (399)
T PRK07681 108 HLPMVY--ANPGDIILVPDPGYTAYETG-IQMAGATSYYMPLKKENDF------------LPDLELIPEEIAD---KAKM 169 (399)
T ss_pred HHHHHh--CCCCCEEEECCCCccchHHH-HHhcCCEEEEEecCCCCCC------------cCCHHHHHHhccc---cceE
Confidence 988742 34567788889998775443 3344544333222111111 0178888887753 4666
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-h-hhccCC---CCchhhhhhhcC-CCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A-QEYFGV---TPDLTTLGKIIG-GGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~-~~~~g~---~pDi~t~sK~lg-~G~~i 322 (476)
|+++..+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+... . .+..+. ...+-+|||.++ +|+|+
T Consensus 170 v~l~~P~NPTG~~~s~~~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 248 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDF-FKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRI 248 (399)
T ss_pred EEEeCCCCCcCcCCCHHH-HHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcccee
Confidence 666644667888876555 999999999999999999999888 433211 1 111111 112337999998 89999
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
||+++++++++.+.. ......++.+.+.+.++.++|+.... ++..+.++++.+.+.+.|++ +++....+..
T Consensus 249 G~~i~~~~l~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~~ 321 (399)
T PRK07681 249 GYMIGNEEIVRALTQ---FKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT----FGWNVDKPAG 321 (399)
T ss_pred EEEecCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccCCCe
Confidence 999999999988863 22223556778888888887753211 22233344444445444443 3432222445
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
|.++++.+... ....++...+++ +||.+.|+. .+.+|+++..+++++++++++|++
T Consensus 322 g~f~~~~l~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPKG-------------WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 77888877421 112567788877 899998863 236788888889999999999987
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=227.91 Aligned_cols=324 Identities=13% Similarity=0.099 Sum_probs=208.3
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
..+||..+ ++..-..|.+.+++.+.......|+. ..+++..+++++....+..++|++++|+++|+..+++..
T Consensus 86 ~~i~L~~g---~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l- 161 (431)
T PRK15481 86 PLHDLAGG---NPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAH- 161 (431)
T ss_pred hhhhhhcC---CCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHh-
Confidence 35666655 33322346677777765544333332 234555555555443333569999999999999999842
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc-c
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-V 255 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~ 255 (476)
...++.|++.+++|.+. ...+...|..+...+.. ..++ |+++|++.++. +++++++.| .
T Consensus 162 -~~pgd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~-~~g~--------------~~~~l~~~~~~---~~k~i~~~p~p 221 (431)
T PRK15481 162 -LLPGDSVAVEDPCFLSS-INMLRYAGFSASPVSVD-AEGM--------------QPEKLERALAQ---GARAVILTPRA 221 (431)
T ss_pred -CCCCCEEEEeCCCcHHH-HHHHHHcCCeEEeeccC-CCCC--------------CHHHHHHHHhc---CCCEEEECCCC
Confidence 24567788889888775 34444445544332221 1121 78999998864 456666664 4
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcCCCCcEEEEEecHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg~G~~iG~~~~~~~ 330 (476)
+|++|.+.+.++ +++|.++|++| +++||+||+|..| ..+...... ...+.++ +|||.+++|+|+||++++++
T Consensus 222 ~NPTG~~~s~~~-~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~ 298 (431)
T PRK15481 222 HNPTGCSLSARR-AAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QTTQRWALIRSVSKALGPDLRLAFVASDSA 298 (431)
T ss_pred CCCCCccCCHHH-HHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CCCCCEEEEeeeccccCCCceeEEEeCCHH
Confidence 455777776444 99999999999 9999999999877 432111111 1123333 79999999999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
+++.+.. .....+++.+.+++.++.++|+.-.- .+..+.++++.+.+.+.|++ +++....+..|.++|+
T Consensus 299 ~~~~~~~---~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~----~~~~~~~p~gg~f~~~ 371 (431)
T PRK15481 299 TSARLRL---RLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ----YGIAIPSPGDGLNLWL 371 (431)
T ss_pred HHHHHHH---HHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccccCCCeEEEEE
Confidence 9888752 11223345788899998888862110 12233344444444444443 3433334567888888
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeCC-CcHHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA-HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~~-~t~e~i~~~~~~l~~~~~ 472 (476)
.+..+ ..++.+.|.++||.+.|+.. +.+|+++. .+++++++++++|.+++.
T Consensus 372 ~l~~~---------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 372 PLDTD---------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred ECCCC---------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 77421 25677888899999998631 24788766 478999999999999875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=218.34 Aligned_cols=316 Identities=17% Similarity=0.155 Sum_probs=218.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.++|+.+|. |++| .+|++.+++.+.++.. ..||+....+|.+.+++++. ..++|+.+||.+|.+...+++.
T Consensus 23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~--~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~-- 95 (356)
T COG0079 23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKL--NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF-- 95 (356)
T ss_pred cceeecCCC--CCCC-CCHHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh--
Confidence 688999887 7888 5699999998888753 34566677888888888875 3579999999999999999952
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHhcCCCCeEEEEEc
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~e 253 (476)
..+++.|++..++|.-+...+ ...|..+ +.++. .|++.+.+.+.+ ++.+|++.
T Consensus 96 ~~~gd~vl~~~Ptf~~Y~~~a-~~~g~~~-------------------~~v~~~~~~~d~~~~~~~~~~---~~~lv~i~ 152 (356)
T COG0079 96 VEPGDTVLIPEPTFSMYEIAA-QLAGAEV-------------------VKVPLKEFRLDLDAILAAIRD---KTKLVFLC 152 (356)
T ss_pred hcCCCEEEEcCCChHHHHHHH-HhcCCeE-------------------EEecccccccCHHHHHHhhhc---CCCEEEEe
Confidence 234578999899886644333 2333322 22222 267888777764 35555554
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEec
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGR 328 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~ 328 (476)
..+|++|...+.++ ++++.+.|.+ +.+||+||+|..| . . .......-.++++ ||||++| +|+|+||++++
T Consensus 153 nPNNPTG~~~~~~~-l~~l~~~~~~-~~~vVvDEAY~eF~~-~--~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~ 227 (356)
T COG0079 153 NPNNPTGTLLPREE-LRALLEALPE-GGLVVIDEAYIEFSP-E--SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN 227 (356)
T ss_pred CCCCCCCCCCCHHH-HHHHHHhCCC-CcEEEEeCchhhcCC-c--hhhhhccCCCCEEEEEecHHhhhcchhceeeccCC
Confidence 44455677776555 7777777777 9999999999988 5 1 1122222223354 8999999 89999999999
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
+++++.+.+ ....|+.|.++++++.++|+.- ++.++..+....-+++|.+.....++....++.++|+.+.+
T Consensus 228 ~~~i~~l~~-----vr~p~~v~~~a~~aa~aal~~~---~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~ 299 (356)
T COG0079 228 PELIAALNK-----VRPPFNVSSPALAAAIAALRDA---DYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRV 299 (356)
T ss_pred HHHHHHHHH-----hcCCCCCCHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEEC
Confidence 999999974 3357888999999999988633 33334444444444444444444442223455677877776
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----cceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+ .. ...+.+.|+++||+++.... .++|++. .|+++.++++++|++++..
T Consensus 300 ~~-------------~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitv-gt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 300 PD-------------AE-AAALAEALLKKGILVRDCSSVGLLPGYLRITV-GTPEENDRLLAALREVLKG 354 (356)
T ss_pred CC-------------cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEe-CCHHHHHHHHHHHHHHHhc
Confidence 32 22 35788999999999998743 2456654 4777779999999998764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=224.33 Aligned_cols=318 Identities=13% Similarity=0.099 Sum_probs=209.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
+++||.+|. +++| .+|.+.+++.+.++.. ..++.....++.+.+++++. +++++++++|+++++..+++.. .
T Consensus 30 ~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~--~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~--~ 102 (359)
T PRK03158 30 KIVKLASNE--NPYG-PSPKVKEAIAAHLDEL--ALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL--L 102 (359)
T ss_pred ceEEecCCC--CCCC-CCHHHHHHHHHHHHHh--hcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH--h
Confidence 678988875 4566 5889999999887653 22344455667777777775 5789999999999998888742 2
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
..++.|++.+++|++.... ....|..+...+.. .+ ..|++++++.++. ++++++++.++|+
T Consensus 103 ~~gd~v~~~~p~y~~~~~~-~~~~g~~~~~~~~~--~~-------------~~d~~~l~~~~~~---~~~~v~i~~p~NP 163 (359)
T PRK03158 103 NPGTNTVMAEPTFSQYRHN-AIIEGAEVREVPLK--DG-------------GHDLEAMLKAIDE---QTKIVWICNPNNP 163 (359)
T ss_pred CCCCEEEEcCCCHHHHHHH-HHHcCCeEEEEecC--CC-------------CcCHHHHHHhcCC---CCCEEEEeCCCCC
Confidence 4567888889999874333 33334333222111 00 0178888887753 4566666656778
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCc-h--hhhhhhcC-CCCcEEEEEecHHHH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD-L--TTLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pD-i--~t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
+|.+.+.++ +.++.+.|+ +|+++|+||+|..| ..+. .......+..+. + .+|||.+| +|+|+||++++++++
T Consensus 164 tG~~~~~~~-l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~ 241 (359)
T PRK03158 164 TGTYVNHEE-LLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELI 241 (359)
T ss_pred CCCCCCHHH-HHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHH
Confidence 899888443 444444442 69999999999877 4321 111111111222 2 38999999 899999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
+.+... ..+++.|++++.++.++|+ +.++.+++++..+..++.+.+...++++ ...++.|.++++.+..+
T Consensus 242 ~~~~~~-----~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~g~~i~~~~~~~- 311 (359)
T PRK03158 242 EKLNIA-----RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGL-FYYPSQTNFIFVDTGRD- 311 (359)
T ss_pred HHHHHh-----cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-eeCCCcCcEEEEECCCC-
Confidence 888642 1246789999999988885 2334444444434444444444334442 22456688888766211
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
..++.+.|+++||.+.++. .+.+|+++. +.+++++++++|+++
T Consensus 312 --------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 312 --------------ANELFEALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred --------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 2578888999999999863 345788766 889999999999875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=222.51 Aligned_cols=324 Identities=14% Similarity=0.105 Sum_probs=212.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.++++..|. +.+| .+|++.+++.+.+.....| +.....+|.+.++++++ .+++|++++|+++++..++++. .
T Consensus 33 ~~~~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~--~ 105 (369)
T PRK08153 33 FRARIGANE--SGFG-PSPSVIAAMREAAAEIWKY--GDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY--V 105 (369)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHHHhhcC--CCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh--c
Confidence 456877763 3444 6889999998876543333 32235677788887775 5789999999999999988842 3
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
..++.|++.+++|.+....+ ...|..+... |.... ..|++++++.+... +++++++...+|+
T Consensus 106 ~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~v--p~~~~-------------~~~~~~l~~~~~~~--~~~~i~l~~P~NP 167 (369)
T PRK08153 106 EPGDPVVTSLGAYPTFNYHV-AGFGGRLVTV--PYRDD-------------REDLDALLDAARRE--NAPLVYLANPDNP 167 (369)
T ss_pred CCCCEEEECCCcchHHHHHH-HHcCCeEEEe--eCCCC-------------CCCHHHHHHHhccc--CCcEEEEeCCCCC
Confidence 45667777788887654322 2233322221 11000 11677776655432 4555555333555
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+|.+.+.++ +++|.++|+ +|++||+||+|..| ..+...... ...++++ ||||.+| +|+|+||+++++++++
T Consensus 168 tG~~~~~~~-l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~ 243 (369)
T PRK08153 168 MGSWHPAAD-IVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIK 243 (369)
T ss_pred CCCCCCHHH-HHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcchheeeeecCHHHHH
Confidence 688877555 777777776 49999999999887 433221111 1234433 8999999 8999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
.+... ..+++.|++++.++.++|+ ++++.+++++..+..++.+.+...+.++. ..+..|.++++.+..
T Consensus 244 ~l~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~~-~~p~~~~f~~~~~~~--- 311 (369)
T PRK08153 244 AFDKV-----RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGLT-PLPSATNFVAIDCGR--- 311 (369)
T ss_pred HHHHh-----hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cCCCcCcEEEEECCC---
Confidence 87632 1346789999999988885 34455556655555666555554444432 234567777766531
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEec-cCC---CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFA-PSQ---FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~~~---~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.....++.+.|+++||.++ |+. ...+|+++. ++++++.++++|++++..+
T Consensus 312 ---------~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~-~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 312 ---------DGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG-PDEELDLFAEALPEALEAA 366 (369)
T ss_pred ---------CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 11234678899999999995 432 246788876 7899999999999998754
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=219.76 Aligned_cols=320 Identities=24% Similarity=0.290 Sum_probs=217.7
Q ss_pred CEEEecccChhhccCCCC-cHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~~~~-------~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~ 170 (476)
++|+.|+++ .+||+. ||+|.+++++.+++... .....+...++.+.++++++ .+..+++++|++++..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~iv~~sg~~a~~~ 76 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG-KEAALVFSSGYAANDG 76 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC-CCCEEEeccHHHHHHH
Confidence 468999999 999995 99999999999987321 11346777899999999884 4567888899999998
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCCeE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIA 248 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a 248 (476)
+++.. ..+++.|++. ..+|......+...|.. +..++..|.+++++++++. +++++
T Consensus 77 ~~~~~--~~~gd~Vl~~-~~~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~le~~i~~~~~~~~~~ 134 (349)
T cd06454 77 VLSTL--AGKGDLIISD-SLNHASIIDGIRLSGAK-------------------KRIFKHNDMEDLEKLLREARRPYGKK 134 (349)
T ss_pred HHHHh--cCCCCEEEEe-hhhhHHHHHHHHHcCCc-------------------eEEecCCCHHHHHHHHHHhhccCCCe
Confidence 88742 2334555554 44555444333333321 2233445788999998753 24678
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-c-ccccchhhccC---CCCchh--hhhhhcCCCC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFG---VTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r-~g~~~~~~~~g---~~pDi~--t~sK~lg~G~ 320 (476)
+|+++++++++|...+ +++|.++|++||++||+||+|. |. . .+.. ...+. ...|++ +++|.++.
T Consensus 135 ~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~-- 206 (349)
T cd06454 135 LIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRG--VEEFGGLTDDVDIIMGTLGKAFGA-- 206 (349)
T ss_pred EEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC--hhhhccccccCcEEEeechhhhcc--
Confidence 8899998888998887 9999999999999999999995 43 2 2211 11111 134554 79999975
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+.|++++++++++.+......+. .+.+.++..++++.++|+.+.+ ++..++++++.+++.+.|.++ ++......
T Consensus 207 ~gG~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~ 281 (349)
T cd06454 207 VGGYIAGSKELIDYLRSYARGFI-FSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL----GFPVGGSP 281 (349)
T ss_pred cCCEEECCHHHHHHHHHhchhhh-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcccCCC
Confidence 56888999998887764222222 2235678888899999988765 566778888888888888764 22111111
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
.+.++.+.+. +.....++.+.|.++||.+.+.+ ...+|++ ...+++++++++++|+++
T Consensus 282 ~~~~~~~~~~-------------~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 282 SHIIPPLIGD-------------DPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCcEEEEeCC-------------ChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 2222222211 11234678899999999987642 1356774 447999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=221.87 Aligned_cols=334 Identities=13% Similarity=0.101 Sum_probs=209.2
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA 167 (476)
+|+.++||..|. ..++ .++.+.+++.+.+.....+.| ..++++++++++.+..+ +++ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGS--SDLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 355677887773 2333 478899999888764322222 23567777777765543 466 69999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++. ....++.|++.+++|.++...+ ...|..+...+.....+. ..|++++++.+.. ++
T Consensus 105 l~~~~~~--l~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~ 166 (388)
T PRK07366 105 TAHLPLA--VLNPGDFALLLDPGYPSHAGGV-YLAGGQIYPMPLRAENDF------------LPVFADIPTEVLA---QA 166 (388)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchHHHH-HhcCCEEEEEECCCccCC------------CCCHHHHHHhhcc---cc
Confidence 9999884 2345677899999998764333 334444333222110010 0167777666643 45
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCC---Cch---hhhhhhcC-CC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT---PDL---TTLGKIIG-GG 319 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~---pDi---~t~sK~lg-~G 319 (476)
++|++.+.+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+........... +.+ -+|||.+| +|
T Consensus 167 k~i~l~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 167 RLMVLSYPHNPTTAIAPLSF-FQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred eEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 66666666777888876555 999999999999999999999888 43321001111111 122 28999998 89
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+|+||+++++++++.+.... ....++..+..+.++++++...++ ++.++.++++.+.+.+.|++ +++....
T Consensus 246 lRiG~~v~~~~li~~l~~~~---~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~----~~~~~~~ 318 (388)
T PRK07366 246 FRIGFAIGNAQLIQALRQVK---AVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQ----IGWPVPL 318 (388)
T ss_pred hhheehcCCHHHHHHHHHHH---hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccC
Confidence 99999999999998876321 111223333344555555531111 23344444455555555543 3433334
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
+..|.++++.+.... + ....++++.+ .++||.+.|+. .+.+|+++..+++++++++++|.+.
T Consensus 319 p~~g~f~~~~~~~~~----------~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 319 PEATMYVWAKLPEPW----------Q-GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAF 387 (388)
T ss_pred CCeeEEEEEECCccc----------C-CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 567888888874310 0 0024566666 46799999862 2467888888999999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=220.82 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=212.6
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~a 171 (476)
.+++++..|.. .++ .++.+.+++.+.+... ..|+ +..++++.+++++.+..+ .+++|++|+|+++++..+
T Consensus 32 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 108 (387)
T PRK08960 32 HDVIHLEIGEP--DFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLA 108 (387)
T ss_pred CCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHH
Confidence 34567666632 223 4789999999888753 2222 124566777777765432 578999999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..+++.|++.+++|......+ ...|..+...+.....+. .-|++++++.+++. ...+++
T Consensus 109 ~~~~--~~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~~--~~~i~i 171 (387)
T PRK08960 109 SSLL--VDPGKHWLLADPGYPCNRHFL-RLVEGAAQLVPVGPDSRY------------QLTPALVERHWNAD--TVGALV 171 (387)
T ss_pred HHHh--cCCCCEEEEcCCCCcchHHHH-HhcCCeEEEEecCcccCC------------CCCHHHHHHHhCcc--ceEEEE
Confidence 9842 345678899899998765433 333443332222111010 01788998888642 334455
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~ 326 (476)
++| +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+... ......++++ +|||.+| +|+|+||++
T Consensus 172 ~~p-~NPtG~~~~~~~-~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~ 247 (387)
T PRK08960 172 ASP-ANPTGTLLSRDE-LAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTGWRLGWLV 247 (387)
T ss_pred ECC-CCCCCcCcCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcccEEEEEE
Confidence 555 566787776555 999999999999999999999888 332211 1233445554 6999998 899999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHhhhcCCce-Eeeeec
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKAGHAI-CGGYIS 401 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g 401 (476)
+++++++.+.. .....+.+.+.+.+.++.++++. ..+++. +.++++.+.+.+.|++ +++.. ..+..|
T Consensus 248 ~~~~~~~~~~~---~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~g~ 319 (387)
T PRK08960 248 APPAAVPELEK---LAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRE----LGFGIAVEPQGA 319 (387)
T ss_pred cCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHh----cCCcCCcCCCee
Confidence 99999887763 22233456688888888888752 112233 3334444444444443 44322 224456
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC-------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.++++.+.+... + ..++++.|+ ++||.+.|+. .+++|+++..+.+.+.+++++|.++++
T Consensus 320 ~f~~~~~~~~~~---------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 320 FYLYADISAFGG---------D---AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred EEEEEeccccCC---------C---HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 777877743110 1 256777765 6899999862 236788877788889999999888764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=220.98 Aligned_cols=332 Identities=14% Similarity=0.096 Sum_probs=216.1
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al 172 (476)
.+++|..|.. .++ .++.+.+++.+.+.... .|. +..+++.++++++.+.++ .++++++++|+++++..++
T Consensus 25 ~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGES--DLP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 4678777742 233 47899999998887643 232 234677888888876654 4689999999999999998
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC-CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+.. ...++.|++.+++|.... ..+...|..+...+..... +. .-|+++|++.++. ++++++
T Consensus 102 ~~l--~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~~------------~~d~~~l~~~~~~---~~~~i~ 163 (382)
T PRK06108 102 QAL--VGPGDEVVAVTPLWPNLV-AAPKILGARVVCVPLDFGGGGW------------TLDLDRLLAAITP---RTRALF 163 (382)
T ss_pred HHh--cCCCCEEEEeCCCccchH-HHHHHCCCEEEEeeCCCCCCCc------------cCCHHHHHHhcCc---cceEEE
Confidence 842 334577888888886643 3333444433222211000 00 0178999888853 456666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-cccc-h-hhccCCCCch---hhhhhhcC-CCCcEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-A-QEYFGVTPDL---TTLGKIIG-GGLPVG 323 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~~~-~-~~~~g~~pDi---~t~sK~lg-~G~~iG 323 (476)
++..+|++|.+.+ .+.+++|.++|++||+++|+||+|.+| .. +... . ....+..+.+ .+|||.++ +|+|+|
T Consensus 164 l~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG 242 (382)
T PRK06108 164 INSPNNPTGWTAS-RDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLG 242 (382)
T ss_pred EECCCCCCCcccC-HHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccccee
Confidence 6555667787765 555999999999999999999999888 43 2111 1 1111111222 37999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
|+++++++++.+.. .....+.+.+++.+.++.++|+...+ ++..++++++.+++.+.|+++. ++....+..|
T Consensus 243 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p~~g 316 (382)
T PRK06108 243 WLVAPPALGQVLEK---LIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALP---GVEVAKPDGA 316 (382)
T ss_pred eeeCCHHHHHHHHH---HHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCee
Confidence 99999999888763 22334566788888888888863211 3344555555555655555431 2221122345
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.++++.+... ....++++.|+ ++||++.|+. ...+|+++..+++++++++++|+++++
T Consensus 317 ~~~~~~l~~~-------------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 317 MYAFFRIPGV-------------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 5667666321 01246777775 5799998753 346788877799999999999998874
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=220.29 Aligned_cols=345 Identities=14% Similarity=0.051 Sum_probs=213.9
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHhhCC----CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----CLLENVLAEMVISAVP----SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~----~~~~~~la~~l~~~~~----~~e-~v~~~~sGseA 167 (476)
.|++++|+..|. ..++ .++.+.+++.+.+......+|+ .+++..+++++.+.++ +++ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g~--p~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVGE--PDEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 455668888774 3444 5778888888776543222233 4566667776655432 344 79999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++. ....++.|++.+++|.+... .+...|..+...+.....++ ..|++++++.+.. ++
T Consensus 119 l~~~~~~--~~~~gd~Vlv~~P~y~~~~~-~~~~~g~~v~~v~~~~~~~~------------~~d~~~l~~~~~~---~~ 180 (410)
T PRK06290 119 LAMLPSC--FINPGDVTLMTVPGYPVTGT-HTKYYGGEVYNLPLLEENNF------------LPDLDSIPKDIKE---KA 180 (410)
T ss_pred HHHHHHH--hCCCCCEEEEeCCCCccHHH-HHHHcCCEEEEEecCCCcCC------------cCCHHHHHHhhcc---cc
Confidence 9999884 23456778888999887533 33344444333222110010 0178888887753 46
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccCCC-Cch--hhhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVT-PDL--TTLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~-pDi--~t~sK~lg-~G~~ 321 (476)
++|+++..+|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.... ....+.. ..+ .+|||.++ +|+|
T Consensus 181 k~i~l~nP~NPTG~v~s~e~-l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR 259 (410)
T PRK06290 181 KLLYLNYPNNPTGAVATKEF-YEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR 259 (410)
T ss_pred eEEEEECCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhh
Confidence 66666644677888876555 999999999999999999999877 3332111 1111111 112 37999997 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+||+++++++++.+... ......+.+.+++.++.++|+..+- ++..++++++.+.+.+.|++ +++....+..
T Consensus 260 iG~ii~~~~l~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~g 332 (410)
T PRK06290 260 LAFVVGNELIVKAFATV---KDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNE----VGFKAEMPGG 332 (410)
T ss_pred eEeEEeCHHHHHHHHHH---HhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHh----CCCeecCCCe
Confidence 99999999999887632 1222334456777777777752110 23444455555555555554 3432222334
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC-eEeccCCC--cceEEeCC---CcHHHHHHHHHHHHHHHHHh
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPSQF--EAGFTSLA---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~~~~~~~--~~~~~~~~---~t~e~i~~~~~~l~~~~~~~ 474 (476)
|.++|+.+.+...... ......++++.|+++| +.+.|+.. ..+|++++ .++++.++++++|++.+.++
T Consensus 333 ~f~l~v~lp~~~~~~~------~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 333 TFYLYVKAPKGTKSGI------KFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred eeEEEEECCCccccCC------CCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 5555667643210000 0012357889999886 45555432 35788765 69999999999999999876
Q ss_pred hC
Q 011856 475 LF 476 (476)
Q Consensus 475 ~~ 476 (476)
-|
T Consensus 407 ~~ 408 (410)
T PRK06290 407 EF 408 (410)
T ss_pred cc
Confidence 43
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=220.09 Aligned_cols=324 Identities=15% Similarity=0.176 Sum_probs=214.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
++++++||.++. +++| .+|.+.+++.+.+.....| +.....+|.+.++++++ .+++|++++|+++++..+++..
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l 104 (367)
T PRK02731 30 GIADIIKLASNE--NPLG-PSPKAIEAIRAAADELHRY--PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAY 104 (367)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh
Confidence 577899999885 4677 5788999999887653333 33334577788887775 5689999999999988877732
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...++.|++.+++|..+. ......|..+...+. ...+ .|++++++.++. ++++|+++.+
T Consensus 105 --~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~-~~~~--------------~~~~~l~~~~~~---~~~~v~l~~p 163 (367)
T PRK02731 105 --LGPGDEVIYSEHGFAVYP-IAAQAVGAKPVEVPA-KDYG--------------HDLDAMLAAVTP---RTRLVFIANP 163 (367)
T ss_pred --cCCCCEEEEecCCHHHHH-HHHHHcCCeEEEecc-cCCC--------------CCHHHHHHHhCC---CCcEEEEeCC
Confidence 345677888888875533 223334443322111 0011 178999988863 4566766666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccc-cchhhccCCCCchh---hhhhhcC-CCCcEEEEEe
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~ 327 (476)
++++|.+.+ ++++.++|+. +|+++|+||+|.++ ..+. .......+..++++ +|||.+| +|+|+||+++
T Consensus 164 ~nptG~~~~----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~ 239 (367)
T PRK02731 164 NNPTGTYLP----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA 239 (367)
T ss_pred CCCCCcCCC----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC
Confidence 778898888 4555555555 49999999999877 4332 22223333334544 7999998 7999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
++++++.+... ..+++.+++++.++.+.|+ +.++.++.++..+..++.+.+...++++.. .++.|.++++.
T Consensus 240 ~~~~~~~l~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~g~~~~i~ 310 (367)
T PRK02731 240 PPEIIDALNRV-----RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGLEY-IPSVGNFILVD 310 (367)
T ss_pred CHHHHHHHHHc-----cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCCceEEEEE
Confidence 99999888642 1245667888888877775 233334444444344444444333344322 24568888887
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+... ....++.+.|.++||++.++. ...+|+++. +.+++++++++|+++++.
T Consensus 311 ~~~~-------------~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 311 FDDG-------------KDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLAA 366 (367)
T ss_pred CCCC-------------CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 7321 113578889999999998864 235788875 788999999999988753
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=215.84 Aligned_cols=301 Identities=13% Similarity=0.139 Sum_probs=206.1
Q ss_pred ccCCC-CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccC-CceEEEE
Q 011856 111 AIIGH-ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKF 187 (476)
Q Consensus 111 ~~lG~-~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~ 187 (476)
+|||. +||.+.++..+.+++ ++++.+++.+|.++++++++ .++++++++||++|+..++. ++.+ ++.|++.
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~---~~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~---al~~~gd~Vli~ 101 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLET---YVGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATIL---ALEPPGRKVVHY 101 (346)
T ss_pred ccccCCCChhHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHH---HhCCCCCEEEEC
Confidence 78888 699999999999987 34677899999999999996 45899999999999999998 4444 4556543
Q ss_pred --eCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 188 --EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 188 --~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
+..+|.++...+...|.. . +.++++++++. . +++++|++++ .+++|.+.+.
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~-------------------~--~~~~~l~~l~~----~-~~~~lIiitg-~s~~G~v~~~ 154 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAE-------------------Y--FESDELSELKK----I-DGTSLVVITG-STMDLKVVSE 154 (346)
T ss_pred CCCCCCchhHHHHHHHcCCE-------------------E--eccCCHHHHhh----C-cCceEEEEEC-CCCCCcccCH
Confidence 345777665555444431 1 12346665432 1 2456777776 4778888764
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc--cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~ 341 (476)
++ |++|.++|++||++||+||+|..+ .....+....++ +|++ ||||++ +|+|+||+++++++++.+.+....
T Consensus 155 ~~-L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~--~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~ 230 (346)
T TIGR03576 155 ED-LKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG--ADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQ 230 (346)
T ss_pred HH-HHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC--CcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcC
Confidence 44 999999999999999999999533 211111222333 4544 799965 468999999999999988753332
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcc
Q 011856 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421 (476)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~ 421 (476)
+ .++.+++.+++++++|+.+..+...+.++++.+.+.+.+++ ..+. +..++|+++.+...
T Consensus 231 ~---~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~~---~~~~~f~~~~~~~~---------- 290 (346)
T TIGR03576 231 F---GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNVE---RTPTGFVIKGVEEE---------- 290 (346)
T ss_pred c---ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCCC---cCCCeEEEEeCCCC----------
Confidence 2 23468889999999997654345566677777766666653 2211 22344666655210
Q ss_pred cchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHH---HHHHHHHHHHHHH
Q 011856 422 SETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSD---DIQHTITAAEKVK 471 (476)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e---~i~~~~~~l~~~~ 471 (476)
+ ....+.+.|.++||++.|+. .+++|+++...++ +++.++++|++.+
T Consensus 291 -~--~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 291 -K--LIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred -C--HHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 0 01334566678899999853 3467888887666 8999999998764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=217.97 Aligned_cols=338 Identities=14% Similarity=0.076 Sum_probs=214.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA 167 (476)
.|+.++||..+. ..++ .++.+.+++.+.+.... .|. +..+++.++++.+.+.++ .++ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGN--PDLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 456778887762 2233 37888888887765422 222 123677777777765533 355 89999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++.. ...++.|++.+++|.+....+ ...|..+..++... .+ ++++++++.++.+.+++
T Consensus 105 l~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~-~~~g~~v~~v~~~~-~~--------------~~~~~l~~~~~~~~~~~ 166 (405)
T PRK09148 105 FANMAQAI--TAPGDVILCPNPSYPIHAFGF-IMAGGVIRSVPAEP-DE--------------EFFPALERAVRHSIPKP 166 (405)
T ss_pred HHHHHHHh--cCCCCEEEEcCCCCcccHHHH-HhcCCEEEEEeCCC-CC--------------CCccCHHHHHhhccccc
Confidence 99998842 345678999999998864433 23343332211110 00 12345566665433355
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCc----hhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD----LTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pD----i~t~sK~lg-~G~ 320 (476)
.+++++..+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ....+.-.++ +-+|||.++ .|+
T Consensus 167 ~~v~l~~P~NPtG~~~s~~~-l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 167 IALIVNYPSNPTAYVADLDF-YKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred eEEEEeCCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 66666554667787776555 999999999999999999999877 433211 1111111122 237999999 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+||+++++++++.+.. .....+++.+.+++.++.+.|+..++ +..++.++++.+.+.+.|++ +++....+
T Consensus 246 R~G~~v~~~~~i~~l~~---~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p 318 (405)
T PRK09148 246 RMGFAVGNERLIAALTR---VKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR----AGWDIPPP 318 (405)
T ss_pred heeeeeCCHHHHHHHHH---HHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----cCCccCCC
Confidence 99999999999988863 22233456678888888877752111 22334445555555555554 34322234
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
..|.++++.+.... . .....++.+.|+ ++||.+.|+. ...+|+++..+++++++++++|.+++
T Consensus 319 ~~g~f~~~~l~~~~-~---------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 319 AASMFAWAPIPEAF-R---------HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred CeeEEEEEECCCcc-C---------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 56778888764210 0 001246777766 6899999863 24578888888999999999999887
Q ss_pred HH
Q 011856 472 MR 473 (476)
Q Consensus 472 ~~ 473 (476)
..
T Consensus 389 ~~ 390 (405)
T PRK09148 389 SS 390 (405)
T ss_pred HH
Confidence 64
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=217.08 Aligned_cols=331 Identities=12% Similarity=0.017 Sum_probs=213.0
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CC-CeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SI-EMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~----~~-e~v~~~~sGseA~ 168 (476)
.|++++||..+. ..++ .++.+.+++.+.+.....|. +..+++..+++++.+.++ ++ ++|++++|+++++
T Consensus 27 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGE--PKHP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCC--CCCC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 377888888774 2333 47888999887765433332 234677788887766543 23 4899999999999
Q ss_pred HHHHHHHHhccC---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 169 MGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 169 ~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
..+++.. ... ++.|++.+++|.+... .....|..+..++.....++ .-|++++++.+.+
T Consensus 104 ~~~~~~l--~~~~~~gd~vlv~~P~y~~~~~-~~~~~g~~~~~vp~~~~~~~------------~~d~~~l~~~~~~--- 165 (396)
T PRK09147 104 FAFAQTV--IDRDGPGPLVVCPNPFYQIYEG-AALLAGAEPYFLNCDPANNF------------APDFDAVPAEVWA--- 165 (396)
T ss_pred HHHHHHH--cCCCCCCCEEEEcCCCccchHH-HHHhcCCEEEEeccCccccC------------ccCHHHHHHHHhh---
Confidence 9999842 223 5678888888877543 33444544433222111110 0178889877753
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc--cch-hh---ccCC--CCch---hhhh
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA-QE---YFGV--TPDL---TTLG 313 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~-~~---~~g~--~pDi---~t~s 313 (476)
++++++++..+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+. ... .. ..+. .+.+ .+||
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 244 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDD-WKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS 244 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHH-HHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence 4566666555677888776555 999999999999999999999877 3331 110 10 1111 1222 2799
Q ss_pred hhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 314 KIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 314 K~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|.++ +|+|+||+++++++++.+.. .....+++.+++.+.++.+++..-.. .+..+.++++.+.+.+.|++.
T Consensus 245 K~~~~~GlRiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---- 317 (396)
T PRK09147 245 KRSNVPGLRSGFVAGDAALLKKFLL---YRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV---- 317 (396)
T ss_pred cccCCccceeeeecCCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 9987 79999999999999888763 11223456778888887777631100 222334444444444444432
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------------CcceEEeCCCcHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------FEAGFTSLAHSSD 458 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------~~~~~~~~~~t~e 458 (476)
+....+..|.++|+.+.. + ..++++.|+ ++||.+.|+. .+.+|+++..+++
T Consensus 318 -~~~~~p~~g~f~~~~~~~------------~---~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~ 381 (396)
T PRK09147 318 -LDVQLPDAGFYLWAKVPG------------D---DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLA 381 (396)
T ss_pred -cCCCCCCeeEEEEEECCC------------C---HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHH
Confidence 122234578888888731 0 146777776 6799998763 2357888888999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKVKM 472 (476)
Q Consensus 459 ~i~~~~~~l~~~~~ 472 (476)
++++++++|+++++
T Consensus 382 ~l~~~l~rl~~~~~ 395 (396)
T PRK09147 382 ECVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=218.00 Aligned_cols=336 Identities=15% Similarity=0.129 Sum_probs=218.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMG 170 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~-~e~v~~~~sGseA~~~ 170 (476)
+.+|||..+. ..++ .++.+.+++.+.+.... .|. +..++++.+++.+...++ . .++|++++|+++|+..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGE--PDFT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 4588888885 2344 36788888888776532 222 124666677777765432 2 4689999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ..+++.|++.+++|.++. ..+...|..+...+... .+. . -|++.|++.+++.+++++++
T Consensus 107 ~~~~~--~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~~~-~~~---------~---~d~~~l~~~~~~~~~~~~~i 170 (391)
T PRK07309 107 SLTAI--LEPGDKVLLPAPAYPGYE-PIVNLVGAEIVEIDTTE-NDF---------V---LTPEMLEKAILEQGDKLKAV 170 (391)
T ss_pred HHHHh--cCCCCEEEEeCCCCcchH-HHHHHcCCEEEEEecCC-cCC---------c---CCHHHHHHHhhccCCCeEEE
Confidence 98842 345678888898988854 33444444333221110 000 0 17899999987654467777
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCc-h---hhhhhhcC-CCCcEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD-L---TTLGKIIG-GGLPVG 323 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pD-i---~t~sK~lg-~G~~iG 323 (476)
+++..+|++|.+.+..+ +++|.++|++||+++|+||+|..| ..+.. .....+ .++ + .+|||.++ +|+|+|
T Consensus 171 ~l~~P~NPtG~~~s~~~-~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG 247 (391)
T PRK07309 171 ILNYPANPTGVTYSREQ-IKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIG 247 (391)
T ss_pred EEECCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCccceeE
Confidence 77644667787776555 999999999999999999999887 43321 111111 222 2 27999998 899999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
|+++++++++.+... ......+.+++++.++.+.|+.... ....++++++.+++.+.|++ +++....+..|
T Consensus 248 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p~gg 320 (391)
T PRK07309 248 LIFAPAEFTAQLIKS---HQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD----LGFKIIKPDGA 320 (391)
T ss_pred EEEeCHHHHHHHHHH---HhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCee
Confidence 999999998887631 1223346678888888777753211 22345555566666665554 33322223345
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHH-HHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++.+.... .....++.+. +.++||.+.|+. ...+|+++..+.+++++++++|.+++++.
T Consensus 321 ~~~~~~l~~~~-----------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 321 FYIFAKIPAGY-----------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred EEEEEECCCCC-----------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 56666653210 0012456655 457899998864 24678888788999999999999998764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=212.51 Aligned_cols=322 Identities=14% Similarity=0.116 Sum_probs=206.6
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVLR 173 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~al~ 173 (476)
++||..+.. .++ .++++.+++.+.......|.. ..+++.++++.+.+.++ +++ +|++|+|+++|+..++.
T Consensus 2 ~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~ 78 (350)
T TIGR03537 2 LFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPL 78 (350)
T ss_pred eEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHH
Confidence 578887742 233 478899999887654323322 24667777777766543 456 89999999999999887
Q ss_pred HHHhccC----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 174 LARAFTG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 174 ~ar~~~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
. +.+ ++.|++.+++|.++...+ ...|..+..++.....++ . -|++++++.+++ ++++
T Consensus 79 ~---~~~~g~~~d~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~~~~---~~~~ 139 (350)
T TIGR03537 79 V---FIDPEEDRRRVIFGTPGYPVYERGA-LFAGGEPTAVKLKKEDGF---------L---LRLEKVEKSILE---ETKI 139 (350)
T ss_pred H---HcCCCCCCceEEEcCCCCcchHHHH-HhcCCEEEEcccCcccCC---------c---cCHHHHHHhhhh---ccEE
Confidence 3 332 258888888888754443 344444333222111111 0 178999988864 4666
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGA 324 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~ 324 (476)
+++++.+|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+........+. +.++ +|||.++ +|+|+||
T Consensus 140 i~i~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~GlRiG~ 217 (350)
T TIGR03537 140 VWINYPHNPTGATAPRSY-LKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAFHSLSKRSGMTGYRSGF 217 (350)
T ss_pred EEEeCCCCCcCcccCHHH-HHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEEeecccccCCcccccee
Confidence 767666777888776555 999999999999999999999766 3222111111121 1222 7999997 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT----YEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+++++++++.+... ....+.+.+++.+.++.+++. .+++ +++++++.+.+.+.|++ +++....+..
T Consensus 218 ~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~----~g~~~~~~~g 287 (350)
T TIGR03537 218 VAGDEKLISFLRKL---RANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNK----VGLEYLYPDA 287 (350)
T ss_pred eecCHHHHHHHHHH---HHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHH----CCCcccCCCe
Confidence 99999998877631 112233455567777766653 2333 33344444444444443 3432222334
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
|.++++.+... ....++.+.|.++||++.++. .+.+|+++..+++++++++++|++
T Consensus 288 ~~~~~~~~~~~-------------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 288 TFYLWVKVPSG-------------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred EEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 55677776421 012578888999999998753 245788877889999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-25 Score=216.42 Aligned_cols=321 Identities=14% Similarity=0.100 Sum_probs=210.0
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
+|.+++||..|. +.++ .+|.+.+++.+.++... +|+.....+|.+.++++++ .+++|++++|+++++..+++..
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~--~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~ 102 (357)
T PRK14809 28 DPDDLVKLSSNE--NPHG-PSPAAVEAIREAAERVH--SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM 102 (357)
T ss_pred CccceeEecCCC--CCCC-CCHHHHHHHHHHHhhhh--cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 456789998874 4455 57889999988776532 3344445677777777776 7889999999999999998842
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...++.|++.+++|..+.. .....|.++...+.+...++ . .|.+++++... ++++|++++.
T Consensus 103 --~~~gd~V~v~~P~y~~~~~-~~~~~g~~~~~~~l~~~~~~-----------~-~~~~~~~~~~~----~~k~i~l~~p 163 (357)
T PRK14809 103 --LDPGDTVLVPDPGFAYYGM-SARYHHGEVREYPVSKADDF-----------E-QTADTVLDAYD----GERIVYLTSP 163 (357)
T ss_pred --cCCCCEEEEeCCChHHHHH-HHHHcCCeEEEEecccCcCC-----------C-cCHHHHHHhhc----CCcEEEEeCC
Confidence 3456778888888764332 33334443333222111111 0 14666655442 3455666666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
+|++|.+.+.++ +++|.++|++ +++||+||+|..| ..+... ..+..+-..-+.+|||.++ +|+|+||++++++++
T Consensus 164 ~NPTG~~~s~~~-~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~ 241 (357)
T PRK14809 164 HNPTGSEIPLDE-VEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWA 241 (357)
T ss_pred CCCCCcCCCHHH-HHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHH
Confidence 677888887555 7777777764 7899999999888 433211 1111111122348999998 899999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
+.+... ..+++.+++++.++.++|+ ++++.++.++..+..++.+.+...... .+..|.++++.+.+
T Consensus 242 ~~~~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~~-- 307 (357)
T PRK14809 242 DAYARV-----NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAPT----WESAGNFVLAEVGD-- 307 (357)
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCCCEEEEECCC--
Confidence 988631 2356778888888888774 233444444444444444444332221 24568888877621
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
..++.+.|.++||.+.++. .+.+|+++. +++++++++++|+++++
T Consensus 308 --------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 308 --------------ASAVAEAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred --------------HHHHHHHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 2467788889999999874 235788865 57899999999998764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=214.38 Aligned_cols=343 Identities=15% Similarity=0.113 Sum_probs=214.0
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA 167 (476)
.|..++||..+ ++.+..++.+.+++.+.+......+| ..+++..+++++.+.++ .++ +|++|+|+++|
T Consensus 31 ~~~~~~~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMG---NPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCc---CCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 34567888777 44444566777877776654222222 23577788888876543 456 79999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHH----HHHHHHhcC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----ALENLFENN 243 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~~~ 243 (476)
+..+++. ...+++.|++.+++|.+.... ....|..+..++.....+. .+ |++ .++++++++
T Consensus 108 l~~~~~~--l~~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~~~~---------~~---d~~~l~~~l~~~~~~~ 172 (403)
T PRK08636 108 YVHLVQA--ITNPGDVAIVPDPAYPIHSQA-FILAGGNVHKMPLEYNEDF---------EL---DEDQFFENLEKALRES 172 (403)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchHHH-HHhcCCEEEEEeccccccC---------cc---ChhhhhhHHHHHHhhc
Confidence 9999984 234577888889998775433 3444544433222111100 00 444 567777654
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCch----hhhhhhcC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL----TTLGKIIG 317 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi----~t~sK~lg 317 (476)
..++++++++..+|++|.+.+.++ +++|.++|++|+++||+||+|..+ ..+... ....+.-.+|. .+|||.++
T Consensus 173 ~~~~~~i~~~~P~NPTG~~~s~~~-~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 251 (403)
T PRK08636 173 SPKPKYVVVNFPHNPTTATVEKSF-YERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYN 251 (403)
T ss_pred cCCceEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccC
Confidence 445677766655677888877666 999999999999999999999877 433211 11111112232 36999997
Q ss_pred -CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 318 -GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 318 -~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
+|+|+||+++++++++.+.. ......++.+.+.+.++..+++. .+++++++++.....++.+.+...++++...
T Consensus 252 ~~GlRiG~iv~~~~li~~~~~---~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 252 MAGWRVGFVVGNKKLVGALKK---IKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred CccceeeeeeCCHHHHHHHHH---HHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 89999999999999888763 11222345556666666655531 1333333333333333333333333343222
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
.+..|.++|+.+.+.. . .....++...++ ++||.+.|+. .+.+|+++..+++++++++++|++
T Consensus 327 ~p~~g~~~~~~l~~~~-~---------~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~ 396 (403)
T PRK08636 327 KPRASMFVWAKIPEPA-R---------HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKK 396 (403)
T ss_pred CCCcceEEEEECCCcc-C---------CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 3456788888874210 0 001256776655 6899998872 245788888899999999999999
Q ss_pred HHHH
Q 011856 470 VKMR 473 (476)
Q Consensus 470 ~~~~ 473 (476)
+++.
T Consensus 397 ~l~~ 400 (403)
T PRK08636 397 FLKE 400 (403)
T ss_pred HHHh
Confidence 8865
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=214.61 Aligned_cols=331 Identities=18% Similarity=0.133 Sum_probs=210.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al 172 (476)
.++||..+. ..+. .++.+.+++.+.+... ..|.. ..++++++++++.+..+ .++++++++|+++|+..++
T Consensus 30 ~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLGD--PDLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 467877763 2233 4677877666655432 22321 24566777777765432 5789999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ..+++.|++.+++|.++...+ ...|..+...+.....+. .-|+++|++.++. ++++|++
T Consensus 107 ~~~--~~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~v~l 168 (384)
T PRK06348 107 QSI--LDPGDEVIIHEPYFTPYKDQI-EMVGGKPIILETYEEDGF------------QINVKKLEALITS---KTKAIIL 168 (384)
T ss_pred HHh--cCCCCEEEEeCCCCcchHHHH-HHcCCEEEEecCCcCcCC------------cCCHHHHHHhhCc---CccEEEE
Confidence 842 344567888888887754433 333433322211111111 0178999988863 4555555
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-hccCCCCch---hhhhhhcC-CCCcEEEEE
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDL---TTLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pDi---~t~sK~lg-~G~~iG~~~ 326 (476)
+..+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..... ...+..+.+ .+|||.++ +|+|+||++
T Consensus 169 ~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v 247 (384)
T PRK06348 169 NSPNNPTGAVFSKET-LEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI 247 (384)
T ss_pred eCCCCCCCcCCCHHH-HHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence 555667787775444 999999999999999999999988 43221111 111122232 37999999 899999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
+++++++.+.. .....+++.+++++.++..+|+..++ +.+.+.++++.+++.+.|+++. +.....+..|.++
T Consensus 248 ~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~---~~~~~~p~gg~~~ 321 (384)
T PRK06348 248 APDYIIETAKI---INEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIP---NLSLHPPKGSIYA 321 (384)
T ss_pred cCHHHHHHHHH---HHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeccCCeeEEE
Confidence 99999887762 22334567788999988888863211 2334444555555555555421 2222223345566
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
|+.+..... ...++++.|+ ++||.+.|+. .+.+|+++..+++++++++++|++.
T Consensus 322 ~~~~~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 322 FINIKKTGL------------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 777642111 1256777776 5699999763 2467888888999999999988753
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=215.18 Aligned_cols=329 Identities=14% Similarity=0.067 Sum_probs=207.0
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~ 169 (476)
..++||..+ ++....+|.+.+++.+.+.......| ..+++.++++++.+.++ .++ +|++++|+++++.
T Consensus 32 ~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~ 108 (389)
T PRK08068 32 HDVINLGQG---NPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLV 108 (389)
T ss_pred CCeEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHH
Confidence 346788777 55455678899999888775322222 24566777777654433 456 7999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++. ...+++.|++.+++|..+.. .+...|..+..++.....++. -|++++++.+.+ ++++
T Consensus 109 ~~~~~--~~~~gd~vlv~~P~y~~~~~-~~~~~g~~~~~i~~~~~~~~~------------~d~~~l~~~~~~---~~~~ 170 (389)
T PRK08068 109 ELPQC--LMNPGDTILVPDPGYPDYLS-GVALARAQFETMPLIAENNFL------------PDYTKIPEEVAE---KAKL 170 (389)
T ss_pred HHHHH--hCCCCCEEEEcCCCCcchHH-HHHhcCCEEEEeecccccCCC------------CCHHHHHHhccc---cceE
Confidence 88773 22455778888889876543 334444433332221111110 167888887753 4555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-c-chhhccCCCCc---hhhhhhhcC-CCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-G-GAQEYFGVTPD---LTTLGKIIG-GGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~-~~~~~~g~~pD---i~t~sK~lg-~G~~i 322 (476)
|++...+|++|.+.+.++ +++|.++|++||+++|+||+|..| ..+. . ......+..+. +.+|||.+| +|+|+
T Consensus 171 v~l~~P~NPTG~~~s~~~-~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRi 249 (389)
T PRK08068 171 MYLNYPNNPTGAVATKAF-FEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRV 249 (389)
T ss_pred EEEECCCCCCCCcCCHHH-HHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcccee
Confidence 555533567888776555 999999999999999999999777 4331 1 11122222222 238999998 89999
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
||+++++++++.+...... ...+.+++.+.++.+++..-.+ +.++++++++.+.+.+.|++. ++....+..
T Consensus 250 G~~~~~~~l~~~l~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----g~~~~~~~g 322 (389)
T PRK08068 250 AFAVGNESVIEAINLLQDH---LFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI----GWEVDAPKG 322 (389)
T ss_pred EeEecCHHHHHHHHHHHhh---ccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCe
Confidence 9999999999888632111 1233445566666666631111 234555555555666655543 332222233
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
|.++++.+... ....++.+.|++ +||++.++. .+.+|+++...++.+.+++++|.+
T Consensus 323 ~~~~~v~~~~~-------------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~ 385 (389)
T PRK08068 323 SFFAWMPVPKG-------------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGK 385 (389)
T ss_pred eEEEEEECCCC-------------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 45567777421 012578888886 699998852 246788888888888888888775
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=214.80 Aligned_cols=337 Identities=16% Similarity=0.133 Sum_probs=216.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
|+.++||..+ ++.+..++.+.+++.+.+.....+.| ..+++.++++.+.+.++ .++ ++++++|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 3456777776 55555677788888877654322222 34667777777766532 345 799999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++.. ..+++.|++.+++|......+ ...|..+..++. ..+ ..+.+++++.++...++++
T Consensus 105 ~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~--~~~-------------~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 105 AHLMLAT--LDHGDTVLVPNPSYPIHIYGA-VIAGAQVRSVPL--VEG-------------VDFFNELERAIRESYPKPK 166 (395)
T ss_pred HHHHHHh--CCCCCEEEEcCCCCcchHHHH-HHcCCeEEEEec--ccC-------------CCcHHHHHHHHhhccCCce
Confidence 9887742 345677888888887654433 333332221111 000 0147888888875434677
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC--CCc----hhhhhhhcC-CCC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPD----LTTLGKIIG-GGL 320 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pD----i~t~sK~lg-~G~ 320 (476)
+|+++..+|++|.+.+.++ +++|.++|++||+++|+||+|.++ ..+... .....+ ..| +.+|||.+| +|+
T Consensus 167 ~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~pGl 244 (395)
T PRK08175 167 MMILGFPSNPTAQCVELEF-FEKVVALAKRYDVLVVHDLAYADIVYDGWKA-PSIMQVPGAKDVAVEFFTLSKSYNMAGW 244 (395)
T ss_pred EEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCcEEEEecchHhhccCCCCC-cchhcCCCcccCEEEEeeccccccCcch
Confidence 7777655667888776555 899999999999999999999877 433211 111111 123 237999997 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+||+++++++++.+.+ ......++.+.+.+.++.++|+..+. +.+.+.++++.+++.+.|++ .++....+
T Consensus 245 RiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~p 317 (395)
T PRK08175 245 RIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE----AGWMVEMP 317 (395)
T ss_pred hheeeeCCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCC
Confidence 99999999999988763 22222455566777777777752111 22334444555555555554 34332334
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
..|.++++.+.+... .....++++.++ ++||.+.|+. .+.+|+++..+++.+.+++++|.+++
T Consensus 318 ~~g~~i~i~l~~~~~----------~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 318 KASMYVWAKIPEPYA----------AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred CEEEEEEEECCcccC----------CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 568888888853210 001256777666 6799999862 23578888888999999999999988
Q ss_pred HHh
Q 011856 472 MRF 474 (476)
Q Consensus 472 ~~~ 474 (476)
.+.
T Consensus 388 ~~~ 390 (395)
T PRK08175 388 RAD 390 (395)
T ss_pred Hhc
Confidence 753
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=216.82 Aligned_cols=330 Identities=15% Similarity=0.129 Sum_probs=213.3
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 170 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~ 170 (476)
+.++||..|. ..++ .++.+.+++.+.++.+. .|. +..+++.++++++.+.++ ..+ ++++++|+++|+..
T Consensus 30 ~~~i~l~~g~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 30 HGAINLSQGF--PDFD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 3468888773 2232 47889999988876532 222 234677888888877654 233 79999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ...++.|++.+++|.+. ...+...|..+...+... .+. .-|++++++.++. ++++|
T Consensus 107 ~~~~~--~~~gd~Vli~~p~y~~~-~~~~~~~g~~~~~~~~~~-~~~------------~~d~~~l~~~~~~---~~~~v 167 (386)
T PRK09082 107 AILAL--VRPGDEVIVFDPSYDSY-APAIELAGGRAVRVALQP-PDF------------RVDWQRFAAAISP---RTRLI 167 (386)
T ss_pred HHHHH--cCCCCEEEEeCCCchhh-HHHHHHcCCEEEEEecCc-ccc------------cCCHHHHHHhcCc---cceEE
Confidence 99842 34567788877777664 333444454433322210 010 0178999988863 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc--chhhccCCCCchh---hhhhhcC-CCCcEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLT---TLGKIIG-GGLPVG 323 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pDi~---t~sK~lg-~G~~iG 323 (476)
+++..++++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+.. ......+....++ +|||.++ +|+|+|
T Consensus 168 ~l~~p~NPtG~~~~~~~-~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 246 (386)
T PRK09082 168 ILNTPHNPSGTVWSAAD-MRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVG 246 (386)
T ss_pred EEeCCCCCCCcCCCHHH-HHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhh
Confidence 66666677888776555 999999999999999999999877 43321 1112222222322 7999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
|+++++++++.+.. ......++.+.+++.++.+.++...+ +++.+.++++.+.+.+.|++ .++.......|
T Consensus 247 ~iv~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~g~ 319 (386)
T PRK09082 247 YCVAPAALSAEFRK---VHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN----SRFKLLPCEGT 319 (386)
T ss_pred hhhCCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCee
Confidence 99999999888763 22234566788888877666642111 22334445566666666554 33322223445
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
.++++.+.+.+ .....++++.| .++||.+.|+. .+.+|+++.++++++++++++|++
T Consensus 320 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 320 YFQLVDYSAIS-----------DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEeccccC-----------CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 66777774210 00125677765 57799998863 135789888899999999999875
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=216.14 Aligned_cols=343 Identities=11% Similarity=0.077 Sum_probs=212.0
Q ss_pred CCCEEEecccChhhccC--C--CCcHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011856 97 DGNEYIDYVGSWGPAII--G--HADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAVP---SIEMVRFVNSG 164 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~l--G--~~~p~v~~a~~~~l~~~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~~~sG 164 (476)
+++.+|++..| ++. . -.++++.+++.+.++.+..+.| + .++++.+++++.+.++ .+++|++++|+
T Consensus 64 ~~~~vi~l~~G---dp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 64 VNKTILPLGHG---DPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred CCCCeEECCCC---CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 35678887776 322 1 2467899999988876433333 2 2466677777765443 57899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
++|+..+++.. ..+++.|++.+++|.++.. .....|..+...+.....+. . -|+++|+++++..
T Consensus 141 ~~al~~~~~~l--~~pGd~Vlv~~P~y~~y~~-~~~~~g~~~~~~~l~~~~~~---------~---~d~~~l~~~~~~~- 204 (462)
T PLN02187 141 NQGIEIVFESL--ARPNANILLPRPGFPHYDA-RAAYSGLEVRKFDLLPEKEW---------E---IDLEGIEAIADEN- 204 (462)
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCCCccHHH-HHHHcCCEEEEEeCccccCC---------c---cCHHHHHHhcCCC-
Confidence 99999999942 2456789999999987533 33444544433222110110 0 1789999887642
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchh---hhhhhcC-C
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-G 318 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~---t~sK~lg-~ 318 (476)
..++++++|. |++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+ ....+.-...++ +|||.++ +
T Consensus 205 -~~~v~i~nP~-NPTG~v~s~e~-l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 205 -TVAMVVINPN-NPCGNVYSHDH-LKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP 281 (462)
T ss_pred -cEEEEEeCCC-CCCCCccCHHH-HHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCc
Confidence 4456666665 66777776555 999999999999999999999887 433221 111111111232 7999988 8
Q ss_pred CCcEEEEEec-HH-H---HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 319 GLPVGAYGGR-RD-I---MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 319 G~~iG~~~~~-~~-i---~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|||+||++++ ++ + ++.+........ .+.+.+.+++.++.++|+.-.+ ++..+.++++.+.+.+.|++
T Consensus 282 GlRiG~~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~---- 356 (462)
T PLN02187 282 GWKIGWIALNDPEGVFETTKVLQSIKQNLD-VTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD---- 356 (462)
T ss_pred cceeEEEEecCchhHHHHHHHHHHHHHhcc-ccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 9999999873 32 2 233321111111 1224478888888888863111 22334444455555555554
Q ss_pred cCCceE--eeeeceeEEEEEecCCCcCchhhcccchHHHHHH-HHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHH
Q 011856 391 AGHAIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF-YRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 391 ~~~~~~--v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~ 463 (476)
++.... .+..|.++++.+...... ......++ .+.+.++||.+.|+. .+++|+++...++.++++
T Consensus 357 ~~~~~~~~~P~gg~fl~~~l~~~~~~--------~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~a 428 (462)
T PLN02187 357 IPCVVCPKKPESCTYLLTKLELSLMD--------NIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDA 428 (462)
T ss_pred CCCCcCCCCCCEeEEEEeecChhhCC--------CCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHH
Confidence 332211 234567777766321000 00001234 445578899999874 346899998899999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|.+++++.
T Consensus 429 l~rL~~~l~~~ 439 (462)
T PLN02187 429 LERLKGFCTRH 439 (462)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=213.78 Aligned_cols=330 Identities=14% Similarity=0.100 Sum_probs=206.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
|..++|+..+. ..++ .++.+.+++.+.+.... .|.. ..+++.++++++.+.++ +.+ .+++|+|+++++
T Consensus 30 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i 106 (385)
T PRK09276 30 GVDVISLGIGD--PDLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI 106 (385)
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 33457777763 2232 57889999988876532 2221 23566777777765533 345 588999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++.. ...++.|++.+++|..+.. .....|..+...+.....++. -|++++++.+.. +++
T Consensus 107 ~~~~~~~--~~~gd~Vl~~~P~y~~~~~-~~~~~g~~~~~v~~~~~~g~~------------~d~~~l~~~~~~---~~~ 168 (385)
T PRK09276 107 AHIPLAF--VNPGDVVLVPDPGYPVYKI-GTIFAGGEPYFMPLKEENGFL------------PDLDAIPEDVAK---KAK 168 (385)
T ss_pred HHHHHHh--CCCCCEEEEcCCCCcChHH-HHHHcCCEEEEEecCCCCCCc------------CCHHHHHHhccc---cce
Confidence 9998842 3456789999999877543 333444443332221111110 168888777753 456
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhhc---cCCCCchhhhhhhcC-CCCc
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
+|++++.+|++|.+.+.++ +++|.++|++||+++|+||+|..| ..+... .... .+....+.+|||.+| .|+|
T Consensus 169 ~v~l~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlR 247 (385)
T PRK09276 169 LMFINYPNNPTGAVADLEF-FEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWR 247 (385)
T ss_pred EEEEeCCCCCCCCCCCHHH-HHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchh
Confidence 6666655677888776555 999999999999999999999877 433211 1111 111223448999998 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+..... ....+.+++.+.++.++|+.... ++..++++++.+++.+.|++ .++....+.
T Consensus 248 iG~~i~~~~l~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 320 (385)
T PRK09276 248 IGFAVGNADLIAGLGKVKS---NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK----LGLEVEPPK 320 (385)
T ss_pred heeeeCCHHHHHHHHHHHh---hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCC
Confidence 9999999999988863211 12234456677777777642111 23334444445555555544 333222223
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
.|.++++.+... ....++.+.|+ ++||++.++. ...+|+++..+++++.+++++|.+
T Consensus 321 ~~~~~~v~~~~~-------------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 321 ATFYVWAPVPKG-------------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred cceEEEEECCCC-------------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 455567776321 01256777776 5799999863 246789888888888888888764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=215.25 Aligned_cols=320 Identities=15% Similarity=0.069 Sum_probs=209.3
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEE-eCCHHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRF-VNSGTEACMGVLR 173 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~-~~sGseA~~~al~ 173 (476)
.++++++||..|. +++| .+|.+.+++.+.+.... .|+.....++.+.++++++ ..+++++ ++|.++++..+++
T Consensus 31 ~~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~--~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~ 105 (361)
T PRK00950 31 IDPESIIKLGSNE--NPLG-PSPKAVEAIEKELSKIH--RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMR 105 (361)
T ss_pred CCccceEEccCCC--CCCC-CCHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHH
Confidence 4567899998874 4566 68889999988776532 2343334778888888875 5678988 6777888888887
Q ss_pred HHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
.. ..+++.|++.+++|..+. ..+...|..+...+.....+ .|++++++.++. ++++++++
T Consensus 106 ~~--~~~gd~vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~--------------~~~~~l~~~~~~---~~~~v~~~ 165 (361)
T PRK00950 106 TF--IDPGDEVIIPTPTFSYYE-ISAKAHGAKPVYAKREEDFS--------------LDVDSVLNAITE---KTKVIFLC 165 (361)
T ss_pred Hh--cCCCCEEEEcCCChHHHH-HHHHHcCCEEEEeecCCCCC--------------cCHHHHHHHhcc---CCCEEEEe
Confidence 42 345567888888776532 23333444332221111001 178899888753 45566655
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccc-hhhccCCCCchhhhhhhcC-CCCcEEEEEecHHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 331 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i 331 (476)
.+++++|.+.+ .+++.++|+++|+++|+||+|.+|...... ....++-..-+.+|||.+| +|+|+||+++++++
T Consensus 166 ~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 241 (361)
T PRK00950 166 TPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWL 241 (361)
T ss_pred CCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHH
Confidence 55677899988 788999999999999999999877311111 1111111111238999999 89999999999999
Q ss_pred HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 332 ~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
++.+.+. ..+++.++++++++.++++ +.+++++..+..+..++.|.+... + ...+..|.++++.+...
T Consensus 242 ~~~~~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~---~-~~~~~~~~~i~~~~~~~ 309 (361)
T PRK00950 242 IDYYMRA-----KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP---F-KVYPSEANFVLVDVTPM 309 (361)
T ss_pred HHHHHHh-----cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC---e-eECCCcceEEEEECCCC
Confidence 8887642 2234567888888777774 333444444444444444443322 1 11234567777776210
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...++++.|.++||++.++. ...+|+++. +++++++++++|++++
T Consensus 310 --------------~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 --------------TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred --------------CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 12578889999999998752 235788876 7789999999999875
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=214.88 Aligned_cols=340 Identities=14% Similarity=0.115 Sum_probs=213.4
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~a 171 (476)
..++||..+. +-...++++.+++.+.+.+.. .|+. ...++.++++++.+.++ .++++++++|+++|+..+
T Consensus 31 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~ 107 (393)
T PRK05764 31 RDVISLGAGE---PDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNA 107 (393)
T ss_pred CCEEEeCCCC---CCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHH
Confidence 3467888774 222357899999988886532 2321 24556677777655443 467899999999999998
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+... ...++.|++.+++|.++.. .....|..+..++.....+. .-|++.+++.++. ++++|+
T Consensus 108 ~~~~--~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~---~~~~v~ 169 (393)
T PRK05764 108 FMAL--LDPGDEVIIPAPYWVSYPE-MVKLAGGVPVFVPTGEENGF------------KLTVEQLEAAITP---KTKALI 169 (393)
T ss_pred HHHh--cCCCCEEEecCCCCcchHH-HHHHcCCEEEEEecCcccCC------------cCCHHHHHHhhCc---cceEEE
Confidence 8852 3456778888888876433 33344443332221100010 0168999988853 455555
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc--chhhc-cCCCCc---hhhhhhhcC-CCCcEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEY-FGVTPD---LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~-~g~~pD---i~t~sK~lg-~G~~iG 323 (476)
+...+|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+.. ...+. .+.... +.+|||.++ .|+|+|
T Consensus 170 ~~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG 248 (393)
T PRK05764 170 LNSPSNPTGAVYSPEE-LEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG 248 (393)
T ss_pred EECCCCCCCcccCHHH-HHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE
Confidence 5555566788776554 999999999999999999999877 33321 11111 122122 237999999 899999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
|+++++++++.+.. .....+.+.+++++.++.+.|+...+ +++.++++++.+.+++.|++. . ++....+..|
T Consensus 249 ~i~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~g~ 322 (393)
T PRK05764 249 YAAGPKELIKAMSK---LQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI-P--GLECPKPEGA 322 (393)
T ss_pred EEecCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCCcc
Confidence 99999999888763 22223456788888888887752111 233444444455555555442 0 2222223334
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCC----cceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++.+...... ......++...++ ++||.+.++.. +.+|+++.++++++++++++|.+++++.
T Consensus 323 ~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 323 FYVFPNVSKLLGK--------SITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred eEEEEeccccccc--------ccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 5666666431100 0001246777765 57999988642 4679999899999999999999988753
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=215.24 Aligned_cols=337 Identities=14% Similarity=0.053 Sum_probs=210.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al 172 (476)
.++||..+. ..++ .++.+.+++.+.+.... .|+ +..++++++++++.+.++ .++++++++|+++|+..++
T Consensus 34 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~ 110 (391)
T PRK08361 34 NVISLGIGE--PDFD-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAF 110 (391)
T ss_pred CeEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHH
Confidence 468887774 3333 36889999888776532 221 124566667776655432 4789999999999999998
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ...++.|++.+++|.+.. ..+...|..+...++....+. ..|++++++.++. +++++++
T Consensus 111 ~~l--~~~g~~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~~---~~~~v~i 172 (391)
T PRK08361 111 ESL--LEEGDEVIIPDPAFVCYV-EDAKIAEAKPIRIPLREENEF------------QPDPDELLELITK---RTRMIVI 172 (391)
T ss_pred HHh--cCCCCEEEEcCCCCcccH-HHHHHcCCEEEEEecCCccCC------------CCCHHHHHHhccc---ccEEEEE
Confidence 842 345677888888887753 344444544333222111000 0278999988874 4556666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCch--hhhhhhcC-CCCcEEEEEe
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDL--TTLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi--~t~sK~lg-~G~~iG~~~~ 327 (476)
+..+|++|.+.+.++ +++|.++|+++++++|+||+|.+| ..+.. .....+....++ .++||.++ .|+|+||+++
T Consensus 173 ~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~ 251 (391)
T PRK08361 173 NYPNNPTGATLDKEV-AKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIA 251 (391)
T ss_pred eCCCCCCCcCcCHHH-HHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhcc
Confidence 555667887776544 899999999999999999999877 43321 111111111222 27999999 8999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i 406 (476)
++++++.+.. .....+++.+.+.+.++.++|+.-...++.++.++..+..++.+.+.....+...... ..|.++++
T Consensus 252 ~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~ 328 (391)
T PRK08361 252 PEQVIKDMIK---LHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFA 328 (391)
T ss_pred CHHHHHHHHH---HHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEE
Confidence 9999887752 1122345667788888777775321112333333333333333333333332222223 33556777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+..... ...++.+.|+ ++||.+.|+. ...+|+++..+++++++++++|++++++
T Consensus 329 ~l~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 329 NIDETGM------------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred ECCCCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 7642111 1246777776 5799998863 2457888888999999999999998865
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=213.95 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=209.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCCCC----HHHHHHHHHHHhhC-----CCCCeEEEeCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPC----LLENVLAEMVISAV-----PSIEMVRFVNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~~~----~~~~~la~~l~~~~-----~~~e~v~~~~sGseA~ 168 (476)
+.++|+..|. ++++ .+|.+.+++.+.+..+. ...|+. +++.++++++.+.. -.+++|++|+|+++++
T Consensus 28 ~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 28 IQLDRLDTNE--FPYD-LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred cceeEecCCC--CCCC-CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 4588888874 3333 57899999998777632 122343 34455555554332 1467899999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcC-CCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENN-KGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~ 246 (476)
..++... ...+++.|++.+++|.++. ..+...|..+...+... ..++ |+++|++.+++. ..+
T Consensus 105 ~~~~~~~-~~~g~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~~~~~~~~~ 168 (374)
T PRK02610 105 RSLLIAT-CLGGEGSILVAEPTFSMYG-ILAQTLGIPVVRVGRDPETFEI--------------DLAAAQSAIEQTQNPP 168 (374)
T ss_pred HHHHHHH-cCCCCCeEEEcCCChHHHH-HHHHHcCCEEEEecCCcccCCC--------------CHHHHHHHHHhhcCCC
Confidence 8777631 2234347899999997644 34444555443322211 1111 789999988641 125
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch---hhhhhhcC-CCCc
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLP 321 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi---~t~sK~lg-~G~~ 321 (476)
+++|++.+.+|++|.+.+.++ +++|.++| ++++||+||+|..| ..... ....-.+++ -+|||.+| +|+|
T Consensus 169 ~k~i~l~~P~NPTG~~~s~~~-l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~~~~ivi~SfSK~~g~~GlR 242 (374)
T PRK02610 169 VRVVFVVHPNSPTGNPLTAAE-LEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQHPNWVILRTFSKAFRLAAHR 242 (374)
T ss_pred ceEEEEeCCCCCCCCCCCHHH-HHHHHhcc--CCcEEEEeccccccCccchH---HHHhcCCCEEEEEecchhccCcccc
Confidence 677766566778888887665 88888877 49999999999887 32111 111112333 37999997 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
+||+++++++++.+.... ..++.+.+++.++.++++.. +.+.+++++..+. ++.+.+....++.....+..|
T Consensus 243 iG~~v~~~~l~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g 314 (374)
T PRK02610 243 VGYAIGHPELIAVLEKVR-----LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPSAA 314 (374)
T ss_pred eeeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcc
Confidence 999999999998886421 23556788888887777522 2333333333322 233333333332222235667
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++.+... ....++.+.|.++||.+.+. .+.+|+++.. ++++++++++|++++..+
T Consensus 315 ~f~~~~l~~~-------------~~~~~~~~~l~~~gi~v~~~-~~~lRls~~~-~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 315 NFLYLRLSQD-------------AALAALHQALKAQGTLVRHT-GGGLRITIGT-PEENQRTLERLQAALTQL 372 (374)
T ss_pred eEEEEeCCCC-------------CCHHHHHHHHHHCCEEEEeC-CCeEEEeCCC-HHHHHHHHHHHHHHHhhc
Confidence 7888776421 11256788889999999864 3578998775 567899999999988754
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=213.31 Aligned_cols=330 Identities=15% Similarity=0.112 Sum_probs=208.0
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
|..++||..|. ..++ .++.+.+++.+.+.... .|.. ..+++.++++++.+.++ ..+ +|++++|+++++
T Consensus 28 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l 104 (383)
T TIGR03540 28 GVDVISLGIGD--PDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGI 104 (383)
T ss_pred CCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHH
Confidence 34556777763 2333 47889999988776422 2222 23567777777765533 344 689999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++.. ...++.|++.+++|.++.. .....|..+..++.....++ .-|++++++.+.. +++
T Consensus 105 ~~~~~~~--~~~gd~vlv~~P~y~~~~~-~~~~~G~~v~~v~~~~~~g~------------~~d~~~l~~~~~~---~~~ 166 (383)
T TIGR03540 105 AHIPLAF--VNPGDIVLVPDPGYPVYRI-GTLFAGGEPYEMPLKEENGF------------LPDFDAIPEDIAK---KAK 166 (383)
T ss_pred HHHHHHh--CCCCCEEEEeCCCCcchHH-HHHhcCCEEEEEecCcccCC------------ccCHHHHHhhccc---cce
Confidence 9999842 3456778888999887544 34444544433222111111 0178888887753 466
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chh-hccC---CCCchhhhhhhcC-CCCc
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFG---VTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~~g---~~pDi~t~sK~lg-~G~~ 321 (476)
+|+++..+|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.. ... ...+ ....+.+|||.+| +|+|
T Consensus 167 ~v~i~~P~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlR 245 (383)
T TIGR03540 167 LMFINYPNNPTGAVAPLKF-FKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWR 245 (383)
T ss_pred EEEEeCCCCCcCccCCHHH-HHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccce
Confidence 6666644677888876555 999999999999999999999877 43311 111 1111 1122348999998 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+.... .....+.+.+.+.++.++|+...+ ++..+.++++.+.+.+.|++ +++....+.
T Consensus 246 iG~~i~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~ 318 (383)
T TIGR03540 246 IGMAVGNADLIAGLGKVK---TNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK----IGIDVEKPK 318 (383)
T ss_pred eeEEeCCHHHHHHHHHHH---HhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCEecCCC
Confidence 999999999988776311 112234466777777777653211 22334444455555555544 343222233
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
.|.++++.+.+. ....++...|+ ++||.+.++. .+.+|+++..+++++++++++|.+
T Consensus 319 ~~~~~~~~l~~~-------------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 319 ATFYVWVPVPEG-------------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred cceEEEEECCCC-------------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 455677776421 11256777775 6799999862 246889888888888888888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=211.78 Aligned_cols=329 Identities=13% Similarity=0.119 Sum_probs=211.3
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC-C---CCeEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP-S---IEMVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~-~---~e~v~~~~sGseA~~~a 171 (476)
.+|||..|. ..++ .++.+.+++.+.+... ..|+ +..++++++++++.+.++ . .+++++++|+++++..+
T Consensus 30 ~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~ 106 (384)
T PRK12414 30 DALNLSQGA--PNFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA 106 (384)
T ss_pred CeEEcCCCC--CCCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence 457777774 2333 4788999998877653 2232 234777888888887764 2 25899999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..+++.|++.+++|.+... .....|..+...+... .+. .-|++.|++.++. ++++|+
T Consensus 107 ~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~~~v~ 167 (384)
T PRK12414 107 ISAL--VHPGDEVIYFEPSFDSYAP-IVRLQGATPVAIKLSP-EDF------------RVNWDEVAAAITP---RTRMII 167 (384)
T ss_pred HHHh--cCCCCEEEEeCCCccchHH-HHHHcCCEEEEEecCc-ccc------------ccCHHHHHhhcCc---ccEEEE
Confidence 9842 3566888998988876433 3333344332221110 010 0178999988863 566666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhhccCCCCch---hhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~g~~pDi---~t~sK~lg-~G~~iG~ 324 (476)
++..+|++|.+.+.++ +++|.++|++||+++|+||+|..| ..+... ...+.+...++ .+|||.++ +|+|+||
T Consensus 168 i~~p~NPTG~~~s~~~-~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~ 246 (384)
T PRK12414 168 VNTPHNPSATVFSAAD-LARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGY 246 (384)
T ss_pred EcCCCCCCCcCCCHHH-HHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEE
Confidence 6666677888776444 999999999999999999999876 333211 11111222222 27999998 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeecee
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (476)
+++++++++.+.. .....+++.+.+++.++.+.|+.-.. .+..+.++++.+.+.+.|++. ++.......|.+
T Consensus 247 ~v~~~~l~~~l~~---~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~~~~~gg~~ 319 (384)
T PRK12414 247 CLAPAELMDEIRK---VHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS----RFELLPSEGSFF 319 (384)
T ss_pred EecCHHHHHHHHH---HHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC----CCeecCCCcceE
Confidence 9999999888763 22234567788888888777642110 123445556666666655543 322222234455
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHH-HHHHHCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
+++.+.... +. ...++. ..|.++||.+.|+. .+.+|+++..+++++++++++|.+
T Consensus 320 ~~~~~~~~~----------~~-~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 320 MLARFRHFS----------DE-SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred EEEcccccC----------CC-CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 555653210 00 013444 55668899999863 235888888899999999999864
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=213.73 Aligned_cols=342 Identities=14% Similarity=0.042 Sum_probs=209.4
Q ss_pred CCEEEecccChhhc-cCCCCcHHHHHHHHHHHHhcCC-CC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 98 GNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGTS-FG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 98 G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~l~~~~~-~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
|..++|+..|.... .++ .++.+.+++.+.+..... |+ +..++++.+++++...++ ++++|++++|+++|+.
T Consensus 29 ~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 107 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQ 107 (398)
T ss_pred CCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 56788888884321 233 578999999888865422 22 123555666666654433 5789999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ...++.|++.+++|.+....+ ...|..+.........+. .-|++.+++.+.. ++++
T Consensus 108 ~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 169 (398)
T PRK08363 108 LIFGAL--LDPGDEILIPGPSYPPYTGLV-KFYGGVPVEYRTIEEEGW------------QPDIDDIRKKITE---KTKA 169 (398)
T ss_pred HHHHHh--CCCCCEEEEcCCCCcchHHHH-HHcCCEEEEeccccccCC------------cCCHHHHHhhCCc---ceEE
Confidence 999842 345677888888887754433 333322211100000111 0178888888753 4555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGA 324 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~ 324 (476)
|++...+|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+.......+.-..+++ +|||.++ +|+|+||
T Consensus 170 v~l~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ 248 (398)
T PRK08363 170 IAVINPNNPTGALYEKKT-LKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGY 248 (398)
T ss_pred EEEECCCCCCCcCcCHHH-HHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEE
Confidence 555555666788776555 999999999999999999999876 433221111111122233 7999976 7999999
Q ss_pred EEe--cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 325 YGG--RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 325 ~~~--~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+++ ++++++.+..........+++.+.+++.++.++|+...+ .+..++++++.+++.+.|++ ++......+.
T Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~ 324 (398)
T PRK08363 249 IYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE----IPGISTTKPQ 324 (398)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc----CCCCEecCCC
Confidence 987 666665544210111112356788888888888752111 23334455555555555543 3222222344
Q ss_pred ce-eEEEEEecCCCcCchhhcccchHHHHHH-HHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 401 SG-MFGFFFTEGPVYNFEDAKKSETTKFARF-YRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 401 g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
|. ++++.+..... .+ ..++ .+.|.++||.+.++. ..++|+++..+++++++++++|.++++
T Consensus 325 g~~~~~~~l~~~~~--------~~---~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 325 GAFYIFPRIEEGPW--------KD---DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMR 393 (398)
T ss_pred eEEEEEEEeccCCC--------CC---HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 44 44445532100 00 1234 455678999998863 235788888899999999999999887
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
+.
T Consensus 394 ~~ 395 (398)
T PRK08363 394 ER 395 (398)
T ss_pred Hh
Confidence 64
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=211.72 Aligned_cols=324 Identities=15% Similarity=0.139 Sum_probs=208.0
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ 174 (476)
.++.+++||..|. +++| .++.+.+++.+.+.... .|+.....+|.+.+++++. ++++|++++|+++++..+++.
T Consensus 17 ~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~--~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 91 (356)
T PRK08056 17 ISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAE--RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSG 91 (356)
T ss_pred CChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhcc--cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence 3466789988764 5666 68889999988776533 3344446788888888876 678999999999999998884
Q ss_pred HHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
+.+ +++++..++|..+. ..+...|..+...+.....++ . .| +++++.+. +++++|++..
T Consensus 92 ---l~~-g~viv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~-----------~-~~-~~~~~~~~---~~~k~v~l~~ 150 (356)
T PRK08056 92 ---LKP-RRAMIVTPGFAEYR-RALQQVGCEIRRYSLREADGW-----------Q-LT-DAILEALT---PDLDCLFLCT 150 (356)
T ss_pred ---hCC-CCEEEeCCCcHHHH-HHHHHcCCeEEEEecccccCC-----------C-cc-HHHHHhcc---CCCCEEEEeC
Confidence 334 35777888876543 233444544333222111111 0 02 34444443 2566666655
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc-h--hhhhhhcC-CCCcEEEEEe-c
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD-L--TTLGKIIG-GGLPVGAYGG-R 328 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD-i--~t~sK~lg-~G~~iG~~~~-~ 328 (476)
.+|++|.+.+ ++.+++|.++|++||+++|+||+|.+| ..+.... ..+...+. + .+|||.++ .|+|+||+++ +
T Consensus 151 p~NPTG~~~~-~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~ 228 (356)
T PRK08056 151 PNNPTGLLPE-RQLLQAIAERCKSLNIALILDEAFIDFIPDETGFI-PQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSD 228 (356)
T ss_pred CcCCCCCCCC-HHHHHHHHHHHHhcCCEEEEecchhccCCcchHHH-HHhccCCCEEEEEechhhccCcchhheeeecCC
Confidence 5666787654 555999999999999999999999888 4332111 11111122 2 37999999 8999999987 4
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
+++++.+... ...++.+.+++.++.++++.-.. .+..++++++.+++.+.|+++ +.....+..|.++++.
T Consensus 229 ~~~~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~~~~ 299 (356)
T PRK08056 229 DAAVARMRRQ-----QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCAL----PLLTVWPGRANYLFLR 299 (356)
T ss_pred HHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEEcCCCCcEEEEE
Confidence 6777777531 23456677777777776631000 233444555555555555442 2122234567777776
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+..+ ..++++.|+++||.+.++.. +++|+++. ++++.+.++++|+++++
T Consensus 300 ~~~~---------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 300 CERP---------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNVLT 354 (356)
T ss_pred cCCC---------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHHHc
Confidence 6311 24688899999999987641 35677755 67899999999988764
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=214.65 Aligned_cols=341 Identities=13% Similarity=0.088 Sum_probs=213.1
Q ss_pred cCCCEEEecccChhhccC--CC--CcHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCC
Q 011856 96 IDGNEYIDYVGSWGPAII--GH--ADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNS 163 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~l--G~--~~p~v~~a~~~~l~~~~--~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~s 163 (476)
.+|+.+|+|..| .+. ++ .++.+.+++.+.+++.. .|+ +..++++++++++.+.++ .+++|++++|
T Consensus 29 ~~~~~~i~l~~G---~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G 105 (409)
T PLN00143 29 DDHRLAISFGFG---DPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG 105 (409)
T ss_pred CCCCceeeCCCC---CCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence 456778888877 443 32 68889999998887642 232 234677777777766542 5789999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
+++++..+++.. ..+++.|++.+++|.++.. .....|..+...+.....+. . -|+++|+++++..
T Consensus 106 ~~~al~~~~~~l--~~~gd~v~v~~P~y~~~~~-~~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~~ 170 (409)
T PLN00143 106 CKHAAEIIIKVL--ARPEANILLPRPGFPDVET-YAIFHHLEIRHFDLLPEKGW---------E---VDLDAVEAIADEN 170 (409)
T ss_pred hHHHHHHHHHHH--cCCCCEEEEcCCCCcCHHH-HHHHcCCEEEEEeccCCCCC---------c---CCHHHHHHhcccC
Confidence 999999999842 3456788888999877533 33334443322211100111 0 1789998887642
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCch---hhhhhhcC-
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL---TTLGKIIG- 317 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi---~t~sK~lg- 317 (476)
..++++++| +|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+..+ ....+.-...+ .+|||.++
T Consensus 171 --~~~~~~~nP-~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 171 --TIAMVIINP-GNPCGSVYSYEH-LNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred --CEEEEEECC-CCCCCCccCHHH-HHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 455666676 566788776555 999999999999999999999888 433211 11112212222 37999977
Q ss_pred CCCcEEEEEec--HHHH------HhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHHHHH
Q 011856 318 GGLPVGAYGGR--RDIM------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 318 ~G~~iG~~~~~--~~i~------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
+|+|+||++++ +.++ +.+.. ......+ .+.+++.++.++|+.- .. ++..++++++.+.+.+.|.+
T Consensus 247 pGlRvG~~v~~~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 322 (409)
T PLN00143 247 PGWGLGWLVTCDPSGLLQICEIADSIKK---ALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE 322 (409)
T ss_pred CccceEEEEeeCchhhhhhHHHHHHHHH---HHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999883 3332 22221 1111222 3677888887777521 00 23344455555555555543
Q ss_pred HhhhcCCce--EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHH-HHHHHCCeEeccCC----CcceEEeCCCcHHH
Q 011856 387 AGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ----FEAGFTSLAHSSDD 459 (476)
Q Consensus 387 ~~~~~~~~~--~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~ 459 (476)
.+... ..+..|.++|+.+..... ++.....++. ..+.++||.+.|+. .+++|+++..++++
T Consensus 323 ----~~~~~~~~~p~gg~f~w~~l~~~~~--------~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~ 390 (409)
T PLN00143 323 ----IPCIMCPQKAEGAFFALVKLNLLLL--------EDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSS 390 (409)
T ss_pred ----CCCCCCCCCCCeeEEEEEecchhhc--------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHH
Confidence 22211 123457788888742100 0000123444 45578899999874 34678998889999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|.+++++.
T Consensus 391 l~~al~rl~~~l~~~ 405 (409)
T PLN00143 391 LEDGLGRLKSFCGRH 405 (409)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-24 Score=212.09 Aligned_cols=331 Identities=15% Similarity=0.109 Sum_probs=208.3
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP-----CLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~-----~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
|..++||..+ ++.+..++.+.+++.+.+.......|+ .+++.++++++.+.++ .++ .+++|+|+++++
T Consensus 34 g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al 110 (394)
T PRK05942 34 GLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL 110 (394)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence 4456888776 555545677888887777543222222 3667777777766543 455 588999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..++... ...++.|++.+++|.+....+ ...|..+...+.....+. .-|++++++.+.. +++
T Consensus 111 ~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~k 172 (394)
T PRK05942 111 THLALAY--VNPGDVVLVPSPAYPAHFRGP-LIAGAQIYPIILKPENDW------------LIDLSSIPEEVAQ---QAK 172 (394)
T ss_pred HHHHHHh--CCCCCEEEEcCCCCcchHHHH-HHcCCEEEEeecCCccCC------------ccCHHHHHHhccc---cce
Confidence 9998842 455678999999998754433 333433322211100110 0178889888753 566
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chh-hc---cCCCCchhhhhhhcC-CCCc
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
+|++...+|++|.+.+.++ +++|.++|++||+++|+||+|..| ..+.. ... +. .+....+.+|||.++ +|+|
T Consensus 173 ~i~l~~P~NPtG~~~s~~~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlR 251 (394)
T PRK05942 173 ILYFNYPSNPTTATAPREF-FEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWR 251 (394)
T ss_pred EEEEcCCCCCCCCcCCHHH-HHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhh
Confidence 7776644667887776555 999999999999999999999877 43321 111 11 111223347999998 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+... .....++.+.+++.++.++|+..++ ++..++++++.+++.+.|++ .++....+.
T Consensus 252 iG~i~~~~~l~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~ 324 (394)
T PRK05942 252 VGFVVGNRHIIQGLRTL---KTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE----LGWNIPPTK 324 (394)
T ss_pred eeeeecCHHHHHHHHHH---HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCC
Confidence 99999999999888732 1222455677788888887763221 33445555555555555544 333222233
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHH-HHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.|.++++.+.... + ..++... +.++||.+.++. .+++|+++..+.+.+.+++++|.++
T Consensus 325 ~~~f~~~~~~~~~----------~---~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 325 ATMYLWVPCPVGM----------G---STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred eeeEEEEECCCCC----------C---HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 4557777764210 1 1345544 457899998753 2467888876677777777776653
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=222.02 Aligned_cols=341 Identities=11% Similarity=0.077 Sum_probs=208.4
Q ss_pred cCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
..|+.+|+|..|.. +++|. .++++.+++.+.+.....|.. ..++++++++++..... .+++|++++|+++++
T Consensus 143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 35778899888622 34565 478899999888765433322 23455566666544332 578999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++.. ...++.|++.+++|..+...+ ...|..+...+.....++ .-|++++++.++. +++
T Consensus 222 ~~~~~~l--~~~Gd~Vli~~P~y~~y~~~~-~~~g~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~k 283 (517)
T PRK13355 222 NLSMSAL--LDDGDEVLIPSPDYPLWTACV-NLAGGTAVHYRCDEQSEW------------YPDIDDIRSKITS---RTK 283 (517)
T ss_pred HHHHHHh--CCCCCEEEEcCCCCcCHHHHH-HHCCCEEEEeecCcccCC------------CCCHHHHHHhcCc---Cce
Confidence 9999842 345678999999998765433 334443322211111110 0178999988863 455
Q ss_pred EE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch-----hhhhhhcC-CCC
Q 011856 249 AI-ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL-----TTLGKIIG-GGL 320 (476)
Q Consensus 249 ~v-i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi-----~t~sK~lg-~G~ 320 (476)
+| +++| +|++|.+.+. +.+++|.++|++||++||+||+|..| ..+.... ......+|+ -+|||.++ +||
T Consensus 284 ~i~i~nP-~NPTG~v~~~-~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G~ 360 (517)
T PRK13355 284 AIVIINP-NNPTGALYPR-EVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAGY 360 (517)
T ss_pred EEEEECC-CCCCCcCcCH-HHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCccc
Confidence 55 5555 5677887764 44999999999999999999999887 4442111 111123443 26899997 799
Q ss_pred cEEEEEe--cHHH----HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHH---HHHHHHHHHHHHHHHHhhh
Q 011856 321 PVGAYGG--RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYE---YLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 321 ~iG~~~~--~~~i----~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~---~~~~~~~~l~~~L~~~~~~ 390 (476)
|+||+++ ++++ ++.+.. .....++.|.+++.++.++|+.... +++.+ ++.++.+++.+.|++
T Consensus 361 RiG~~i~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~---- 432 (517)
T PRK13355 361 RIGWMILSGNKRIAKDYIEGLNM----LANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNA---- 432 (517)
T ss_pred ceEEEEeeCchhhHHHHHHHHHH----HhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 9999984 4543 333321 1112345678888888888742111 12222 222333444444443
Q ss_pred cCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHH
Q 011856 391 AGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 391 ~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~ 463 (476)
.+........|.| +++.+..... . ..+ ....+.+.|.++||.+.|+. .+++|+++..++++++++
T Consensus 433 ~~g~~~~~p~g~fy~~~~l~~~~~-~-----~~~--~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a 504 (517)
T PRK13355 433 IPGISAVKPKAAFYIFPKIDVKKF-N-----IHD--DEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDA 504 (517)
T ss_pred CCCcccCCCCeeeEEEeecCcccC-C-----CCC--HHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHH
Confidence 3222223444554 4445532100 0 001 11233456778899998863 346789988999999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|.++++..
T Consensus 505 ~~rl~~~~~~~ 515 (517)
T PRK13355 505 MDRLADFFSYY 515 (517)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=212.32 Aligned_cols=326 Identities=11% Similarity=0.031 Sum_probs=206.2
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
+|+.++||..|. ..++ .++.+.+++.+.......|.. ..++++++++++.+.++ .+++|++|+|+++|+..
T Consensus 22 ~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~ 98 (374)
T PRK05839 22 KEYKGLDLTIGE--PQFE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN 98 (374)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 378899998875 3445 468888888776544333322 24677788888877654 57899999999999988
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++....-.+++.|++..++|..+...+ ...|..+...+.....++ .. |++.. .++ ++++|
T Consensus 99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~~-~~~g~~v~~v~~~~~~~~---------~~---d~~~~--~~~----~~k~v 159 (374)
T PRK05839 99 FPQFVLFDKQNPTIAYPNPFYQIYEGAA-IASRAKVLLMPLTKENDF---------TP---SLNEK--ELQ----EVDLV 159 (374)
T ss_pred HHHHHhcCCCCCEEEECCCCchhhHHHH-HhcCCEEEEeecccccCC---------cC---Ccchh--hhc----cccEE
Confidence 8774211134567888888887754443 444544433222111111 00 22221 222 35566
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-hcc---C--CCCchh---hhhhhcC-CC
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYF---G--VTPDLT---TLGKIIG-GG 319 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~---g--~~pDi~---t~sK~lg-~G 319 (476)
++...+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+..... ... + -.++++ +|||.++ +|
T Consensus 160 ~i~nP~NPTG~~~s~~~-l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEE-LIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EEeCCCCCcCcccCHHH-HHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 66555666788776555 999999999999999999999877 32221111 100 0 012333 7999987 79
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+|+||+++++++++.+... .....++.+.+.+.++.+++. ++++.+++++..+.-++.+.+.. +.. .+.
T Consensus 239 lRiG~ii~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~ 307 (374)
T PRK05839 239 LRSGFIAGDASILKKYKAY---RTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREIL---GIT--IPP 307 (374)
T ss_pred ceeEEEecCHHHHHHHHHH---HhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhc---CCC--CCC
Confidence 9999999999998887631 122234567777777766653 23444333333333333333322 221 445
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.|.++++.+.+ ..++++.|++ +||.+.|+. .+++|+++..+++++++++++|.++
T Consensus 308 gg~fi~~~~~~----------------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~ 371 (374)
T PRK05839 308 ATFYVWLPVDN----------------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTY 371 (374)
T ss_pred eeEEEEEeCCC----------------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 67788887631 1467778875 999999852 2467898888999999999999988
Q ss_pred HH
Q 011856 471 KM 472 (476)
Q Consensus 471 ~~ 472 (476)
++
T Consensus 372 l~ 373 (374)
T PRK05839 372 LE 373 (374)
T ss_pred hh
Confidence 74
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=212.49 Aligned_cols=341 Identities=14% Similarity=0.071 Sum_probs=211.4
Q ss_pred CCEEEecccChhhc--cCCCCcHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPA--IIGHADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~--~lG~~~p~v~~a~~~~l~~~~~~~~-~----~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~ 168 (476)
|+.+++|..|...+ .++ .++.+.+++.+.+......+| + .++++++++.+..... ..++|++++|+++++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 34667777763211 122 578899999887775322222 2 3455566666543211 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++.. ..+++.|++.+++|..+. ..+...|..+...+....... --|++.+++.+++ +++
T Consensus 109 ~~~~~~l--~~~gd~v~i~~P~y~~~~-~~~~~~g~~v~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~ 170 (401)
T TIGR01264 109 EMCIAAL--ANAGQNILVPRPGFPLYE-TLAESMGIEVKLYNLLPDKSW------------EIDLKQLESLIDE---KTA 170 (401)
T ss_pred HHHHHHh--CCCCCEEEEeCCCChhHH-HHHHHcCCEEEEeecCCccCC------------CCCHHHHHHHhcc---Cce
Confidence 9999843 235677888888887643 333444443332221111000 0178999888764 345
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc--h---hhhhhhcC-CCCc
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--L---TTLGKIIG-GGLP 321 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD--i---~t~sK~lg-~G~~ 321 (476)
+|++...+|++|.+.+.++ +++|.++|+++|+++|+||+|.+| ..+..+. ....+.++ + -+|||.++ +|+|
T Consensus 171 ~v~~~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlR 248 (401)
T TIGR01264 171 ALIVNNPSNPCGSVFSRQH-LEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPGWR 248 (401)
T ss_pred EEEEcCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCccce
Confidence 5666555667787766555 999999999999999999999988 5442111 11122232 3 37999977 7999
Q ss_pred EEEEEecH------HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 322 VGAYGGRR------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 322 iG~~~~~~------~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+||+++++ ++++.+.. .. ...++.+++++.++.+.|+...+ ++..++++++.+.+.+.|+++ .+
T Consensus 249 iG~iv~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~---~~ 321 (401)
T TIGR01264 249 LGWIIIHDRRGILRDIRDGLVK---LS-QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV---PG 321 (401)
T ss_pred EEEEEecCcchhHHHHHHHHHH---Hh-hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 99998863 34444431 11 12345678888888888753111 223344444445555555442 02
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAA 467 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l 467 (476)
+....+..|.++++.+..... ++.....++.+.|+ ++||++.|+. .+.+|+++...++++++++++|
T Consensus 322 ~~~~~p~~g~f~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl 393 (401)
T TIGR01264 322 LRPVMPSGAMYMMVGIEMEHF--------PEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRI 393 (401)
T ss_pred CcccCCCeeeEEEEEeccccc--------CCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 222335678888888743100 00001246677775 7899998864 2467888888899999999999
Q ss_pred HHHHHHh
Q 011856 468 EKVKMRF 474 (476)
Q Consensus 468 ~~~~~~~ 474 (476)
.++++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 9988764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=214.79 Aligned_cols=333 Identities=16% Similarity=0.147 Sum_probs=198.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
.++.+.+++.+.+.+...++| ..++++.+++++.+..+ ++++|++|+|+++|+..++. ....++.|++.
T Consensus 49 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~---l~~~Gd~Vlv~ 125 (433)
T PRK06855 49 IPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG---LLRREARVIGP 125 (433)
T ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH---hcCCCCeEEEe
Confidence 577888888887754322222 34677788888876543 57899999999999988875 34567889999
Q ss_pred eCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 188 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
+++|+++........+..+..++.....++ .-|+++|++.++.+++..++++++| +|++|.+.+.++
T Consensus 126 ~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~------------~~d~~~l~~~~~~~~~~~~i~l~~P-~NPTG~~~s~~~ 192 (433)
T PRK06855 126 SPAYSTHSSAEAAHAGYPPVTYRLDPENNW------------YPDLDDLENKVKYNPSIAGILLINP-DNPTGAVYPKEI 192 (433)
T ss_pred CCCCchHHHHHHHhcCCeEEEEecccccCC------------CCCHHHHHHHHhcCCCceEEEEECC-CCCCCcCCCHHH
Confidence 999998543222222332222111111111 0178999999975322234445555 566777776555
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc-----hhhhhhhcC-CCCcEEEEEec-----H---HHH
Q 011856 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD-----LTTLGKIIG-GGLPVGAYGGR-----R---DIM 332 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD-----i~t~sK~lg-~G~~iG~~~~~-----~---~i~ 332 (476)
+++|.++|++||++||+||+|..| ..+.... ....+.+| +.+|||.++ +|||+||++++ + .++
T Consensus 193 -~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~-sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~ 270 (433)
T PRK06855 193 -LREIVDIAREYDLFIICDEIYNNIVYNGKKTV-PLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYI 270 (433)
T ss_pred -HHHHHHHHHHcCCEEEEeccccccccCCCCCC-CHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999888 4442111 11111122 237999998 89999999872 2 233
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHhhhc-CCceEeeeeceeEEEE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFF 407 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~----~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~i~ 407 (476)
+.+.. .. ....+.+.+++.++.++|+.-.-+++. +.++++.+.+.+.|+ ++ ++....+..|.++|+.
T Consensus 271 ~~~~~---~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~----~~~~~~~~~p~gg~~~w~~ 342 (433)
T PRK06855 271 NSILN---AK-MIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLK----DVPGLKVNRTNGAFYMTVV 342 (433)
T ss_pred HHHHH---hh-ccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCeeccCCCeeEEEeec
Confidence 33321 11 123356778888887777421001222 233333333333333 23 2222233456778887
Q ss_pred EecCCCcC-----c-----hhh---cccc-hHHHHHHHH-HHHHCCeEeccCCC-----cceEEeCCC-cHHHHHHHHHH
Q 011856 408 FTEGPVYN-----F-----EDA---KKSE-TTKFARFYR-GMLEEGVYFAPSQF-----EAGFTSLAH-SSDDIQHTITA 466 (476)
Q Consensus 408 ~~~~~~~~-----~-----~~~---~~~~-~~~~~~~~~-~l~~~Gv~~~~~~~-----~~~~~~~~~-t~e~i~~~~~~ 466 (476)
+....... + ... ...+ .....++.. .+.++||.+.|+.. +.+|+++.. +++++++++++
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~ 422 (433)
T PRK06855 343 FEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQT 422 (433)
T ss_pred cccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 75321000 0 000 0000 001234554 45678999998731 247888774 99999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|.+++++.
T Consensus 423 l~~~~~~~ 430 (433)
T PRK06855 423 LAEKIEEY 430 (433)
T ss_pred HHHHHHHH
Confidence 99999864
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=210.76 Aligned_cols=332 Identities=13% Similarity=0.064 Sum_probs=214.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~---~~~~~~~~la~~l~~~~~---~-~e~v~~~~sGseA~~~a 171 (476)
++|+..|. ..+. .++.+.+|+.+.+..... |. +..+++.++++.+++.++ . .+++++++|+++++..+
T Consensus 29 ~~~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 29 TISLGQGV--VSYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred eEEccCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 46666663 2233 578899999887764322 21 234777888898888765 2 56899999999999988
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..+++.|++.+++|.... ..+...|..+...+.....+ -|++++++.++. ++++|+
T Consensus 106 ~~~~--~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~klv~ 165 (389)
T PRK05957 106 ILAI--TDPGDEIILNTPYYFNHE-MAITMAGCQPILVPTDDNYQ--------------LQPEAIEQAITP---KTRAIV 165 (389)
T ss_pred HHHh--cCCCCEEEEeCCCCcCHH-HHHHhcCCEEEEeecCCCCC--------------cCHHHHHHhcCc---CceEEE
Confidence 8742 345677888888876643 33333444332221111111 178999998863 466666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-ch-hhccCCCCc---hhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGVTPD---LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~~g~~pD---i~t~sK~lg-~G~~iG~ 324 (476)
+...+|++|.+.+..+ +++|.++|++||++||+||+|.+| ..+.. .. ....+..+. +.+|||.+| .|+|+||
T Consensus 166 ~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 244 (389)
T PRK05957 166 TISPNNPTGVVYPEAL-LRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGY 244 (389)
T ss_pred EeCCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEE
Confidence 6666777888887665 999999999999999999999877 43211 11 111122222 347999998 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeec
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYIS 401 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g 401 (476)
+++++++++.+... ......+.+.+++.++..+|+.-.. ++..++++++.+.+.+.|+++. +. ....+..|
T Consensus 245 ~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---~~~~~~~~~gg 318 (389)
T PRK05957 245 MVIPIHLLEAIKKI---QDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQ---DRCTLHPANGA 318 (389)
T ss_pred EecCHHHHHHHHHH---HhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccCCCee
Confidence 99999999888632 1222334566777777777742110 2234445555555555555431 11 11123346
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
.++++.+..+ . ...++.+.|+ ++||.+.|+. ...+|+++. .+++++++++++|.+.+++
T Consensus 319 ~~~~~~~~~~-~------------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 319 FYCFLKVNTD-L------------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred EEEEEeCCCC-C------------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 6677776321 1 1256778876 5899999873 135788875 5899999999999999887
Q ss_pred hh
Q 011856 474 FL 475 (476)
Q Consensus 474 ~~ 475 (476)
++
T Consensus 386 ~~ 387 (389)
T PRK05957 386 IV 387 (389)
T ss_pred hh
Confidence 65
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=209.62 Aligned_cols=334 Identities=15% Similarity=0.085 Sum_probs=211.4
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 170 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~ 170 (476)
..++||..+. +.-..++.+.+++.+.++.. ..|+ +..+++.++++++.+..+ +++ ++++++|+++|+..
T Consensus 28 ~~~i~l~~~~---p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQ---PDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCC---CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 3567777773 22124678999999988753 2222 235667777777765433 456 89999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ...++.|++..++|.++... ....|..+...+.. ..++. -|.+++++.++. +++++
T Consensus 105 ~~~~l--~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~-~~~~~------------~~~~~l~~~~~~---~~~~i 165 (387)
T PRK07683 105 AFRTI--LEPGTEVILPAPIYPGYEPI-IRLCGAKPVFIDTR-STGFR------------LTAEALENAITE---KTRCV 165 (387)
T ss_pred HHHHh--CCCCCEEEEcCCCccchHHH-HHHcCCEEEEeecC-cccCC------------CCHHHHHHhcCc---CceEE
Confidence 98852 34567788888888875443 33444433322111 01110 167888888763 45566
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCch---hhhhhhcC-CCCcEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi---~t~sK~lg-~G~~iG~ 324 (476)
++..++|++|.+.+..+ +++|.++|+++|+++|+||+|..+ ..+.. ......+...++ .+|||.++ +|+|+||
T Consensus 166 ~i~~p~NPtG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~ 244 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEE-LQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGF 244 (387)
T ss_pred EEeCCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEE
Confidence 66555667788776555 999999999999999999999877 43321 111221221222 37999999 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+... ......+.+.+++.++.+.|+.-.. +..+++++++.+.+.+.|.+ .++....+..|.
T Consensus 245 i~~~~~l~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~ 317 (387)
T PRK07683 245 LFAPSYLAKHILKV---HQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS----MGLDVEKPTGAF 317 (387)
T ss_pred EEcCHHHHHHHHHH---HHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCCCeeE
Confidence 99999998887631 1222334567777777777752111 22344445555555555544 333222233455
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHH-HHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++.+..... ...++... +.++||.+.|+. .+.+|+++..+++++.+++++|.+++++-
T Consensus 318 ~~~~~~~~~~~------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 318 YLFPSIGHFTM------------SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred EEEEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 55555532110 01345544 567899998863 24678988889999999999999988653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=206.77 Aligned_cols=317 Identities=15% Similarity=0.126 Sum_probs=210.4
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
.+|+..|. +.++ .++.+.+++.+.+.......|+.+...+|.+.++++++ .+++|++++|+++++..+++.. ..
T Consensus 24 ~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l--~~ 98 (351)
T PRK14807 24 KYKMDANE--TPFE-LPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF--IN 98 (351)
T ss_pred eeEccCCC--CCCC-CCHHHHHHHHHHhhcCcccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh--cC
Confidence 36666663 3333 57899999988776433233444445778888888876 5789999999999999988842 34
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
.++.|++.+++|..+ .......|..+...+.....+ -|++++++.++.. ++++|+++..+|++
T Consensus 99 ~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~~~--~~k~v~l~~p~NPt 161 (351)
T PRK14807 99 KGDVVIYPHPSFAMY-SVYSKIAGAVEIPVKLKEDYT--------------YDVGSFIKVIEKY--QPKLVFLCNPNNPT 161 (351)
T ss_pred CCCEEEEeCCChHHH-HHHHHHcCCeEEEeecCCCCC--------------CCHHHHHHHhhcc--CCCEEEEeCCCCCC
Confidence 567899988888753 333444454433322111111 1789999988743 56666666667778
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhh
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l 335 (476)
|.+.+ .+++.++|++++.++|+||+|.+|. +... ....+..++++ +|||.++ +|+|+||+++++++++.+
T Consensus 162 G~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~-~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~ 235 (351)
T PRK14807 162 GSVIE----REDIIKIIEKSRGIVVVDEAYFEFY-GNTI-VDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYL 235 (351)
T ss_pred CCCCC----HHHHHHHHHhCCCEEEEeCcchhhc-ccch-HHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHH
Confidence 98888 7778888988889999999998772 1111 11111122333 7999999 899999999999999988
Q ss_pred cCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcC
Q 011856 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (476)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (476)
.... ..++.+.+++.++.+.|+.-.-++..++++++.+.+.+.|+++ .++ ...++.|.++++.+.+
T Consensus 236 ~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~---~g~-~~~~~~~~~~~i~~~~----- 301 (351)
T PRK14807 236 NLVK-----SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI---PGI-KVYPSKTNFILVKFKD----- 301 (351)
T ss_pred HHcc-----CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-EECcCCccEEEEEcCC-----
Confidence 6321 1345678888888887763111334445555556666665432 122 2234567777776631
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...+.+.|+++||.+.+.. .+.+|+++. +.++.+.+++.|++++
T Consensus 302 -----------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 302 -----------ADYVYQGLLERGILVRDFSKVEGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred -----------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 2567888999999997653 245788876 5678899999888753
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=207.87 Aligned_cols=340 Identities=16% Similarity=0.099 Sum_probs=213.2
Q ss_pred CCCEEEecccChhhccC----CCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011856 97 DGNEYIDYVGSWGPAII----GHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSG 164 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~l----G~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~sG 164 (476)
.|+.+++|..| ++- ...++.+.+++.+.+......+| ..++++++++++....+ .+++|++++|+
T Consensus 29 ~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 105 (409)
T PLN02656 29 NGKRVISLGMG---DPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC 105 (409)
T ss_pred cCCeeeecCCC---CCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence 56788888877 442 34688999999988876322222 23566677777765433 46899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
++|+..++... ...++.|++.+++|..+ .......|..+...+.....+. .-|++++++.++..
T Consensus 106 ~~al~~~~~~l--~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~i~~~~~~~~------------~~d~~~l~~~~~~~- 169 (409)
T PLN02656 106 TQAIDVALSML--ARPGANILLPRPGFPIY-ELCAAFRHLEVRYVDLLPEKGW------------EVDLDAVEALADQN- 169 (409)
T ss_pred HHHHHHHHHHH--hCCCCeEEEeCCCCCcH-HHHHHHcCCEEEEEeCCCcCCC------------CCCHHHHHHHhccC-
Confidence 99999999852 34567788888888653 3333334443332222101111 01789998888642
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCc---hhhhhhhcC-C
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD---LTTLGKIIG-G 318 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pD---i~t~sK~lg-~ 318 (476)
...++++.| +|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+ ....++-... +-+|||.++ +
T Consensus 170 -~~~v~l~~P-~NPtG~~~s~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p 246 (409)
T PLN02656 170 -TVALVIINP-GNPCGNVYSYQH-LKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246 (409)
T ss_pred -ceEEEEECC-CCCCCCCCCHHH-HHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCc
Confidence 345555565 556777765444 999999999999999999999888 444221 1111121112 237999977 7
Q ss_pred CCcEEEEEec--------HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAYGGR--------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 319 G~~iG~~~~~--------~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
|+|+||++++ +++++.+... .. ...+.+.+++.++.++|+...+ ++..++++++.+.+.+.|++
T Consensus 247 GlRiG~~i~~~~~~~~~~~~~~~~~~~~---~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~- 321 (409)
T PLN02656 247 GWRLGWFVTTDPSGSFRDPKIVERIKKY---FD-ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE- 321 (409)
T ss_pred ceeEEEEEEeCcccccccHHHHHHHHHH---Hh-hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999983 5777776531 11 1224578888888888863111 22334444444455555544
Q ss_pred hhhcCCce-E-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHH
Q 011856 388 GKKAGHAI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 388 ~~~~~~~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~ 461 (476)
++... . .+..|.++|+.+........ .+ ....+.+.+.++||.+.|+. .+.+|+++..++++++
T Consensus 322 ---~~~~~~~~~p~gg~~~w~~l~~~~~~~~-----~~--~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~ 391 (409)
T PLN02656 322 ---IPCITCPHKPEGSMAVMVKLNLSLLEDI-----SD--DIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLE 391 (409)
T ss_pred ---CCCCcCCcCCCeEEEEEEecchhhcCCC-----CC--HHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHH
Confidence 32211 1 23456777877642100000 00 11233466778999999874 2467898888999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++..
T Consensus 392 eal~rl~~~~~~ 403 (409)
T PLN02656 392 EALGRIKSFYLR 403 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=207.30 Aligned_cols=319 Identities=15% Similarity=0.180 Sum_probs=206.3
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
..++||..+. +.++. ++.+.+++.+.+..... |+.....+|.+.++++++ ++++|++++|+++++..+++.
T Consensus 19 ~~~~~l~~~~--~~~~~-p~~~~~a~~~~~~~~~~--Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~--- 90 (354)
T PRK06358 19 NMILDFSANI--NPLGV-PESLKQAITENLDKLVE--YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV--- 90 (354)
T ss_pred cceEEecCCC--CCCCC-CHHHHHHHHHHHHhhhc--CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH---
Confidence 3468887764 45553 78999999887765333 344445678888888776 789999999999999999884
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE-EEcccC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI-ILEPVV 256 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v-i~ep~~ 256 (476)
+ .++.|++.+++|+.+...+ ...|..+...+.....++ .. | +++.+.+.. +++++ +++| +
T Consensus 91 ~-~~~~v~i~~P~y~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~-d-~~~~~~~~~---~~~~v~~~~P-~ 151 (354)
T PRK06358 91 T-KPKKVLILAPTFAEYERAL-KAFDAEIEYAELTEETNF-----------AA-N-EIVLEEIKE---EIDLVFLCNP-N 151 (354)
T ss_pred h-CCCcEEEecCChHHHHHHH-HHcCCeeEEEeCccccCC-----------Cc-c-HHHHHhhcc---CCCEEEEeCC-C
Confidence 3 3367888899998754333 334443322211100010 00 4 344444432 34544 5566 5
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CCCcEEEEEe-cH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG-RR 329 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~-~~ 329 (476)
|++|.+.+.++ +++|.++|++||+++|+||+|..| ..+.. ......+..++++ +|||.++ +|+|+||+++ ++
T Consensus 152 NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~ 230 (354)
T PRK06358 152 NPTGQLISKEE-MKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNK 230 (354)
T ss_pred CCCCCccCHHH-HHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCH
Confidence 66777765555 999999999999999999999988 44321 1111222223333 7999999 9999999987 46
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
++++.+.... ..++.+.+++.++.++|+.-.. .+..+.++++.+.+.+.|++ ++.....++.|.++++.+
T Consensus 231 ~~~~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~g~f~~~~~ 301 (354)
T PRK06358 231 NLAEKLLQMR-----EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE----FKGIKVYKPSVNFIFFKL 301 (354)
T ss_pred HHHHHHHHhC-----CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc----CCCcEEcCCcceEEEEEc
Confidence 7877776321 2466788888888888742111 22334445555555555543 322222345677877766
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+ . .++.+.|+++||.+.++.. +.+|++ ..++++.++++++|++++
T Consensus 302 ~~-------------~---~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls-~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 302 EK-------------P---IDLRKELLKKGILIRSCSNYRGLDENYYRVA-VKSREDNKKLLKALEVIL 353 (354)
T ss_pred Cc-------------h---HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE-eCCHHHHHHHHHHHHHHh
Confidence 31 1 5788899999999998631 246776 447788999999998875
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=209.24 Aligned_cols=333 Identities=17% Similarity=0.166 Sum_probs=212.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
..+||..|.. ..+ .++.+.+++.+.+... ..|.. ..++++.+++++.+.++ .++ +|++++|+++++..+
T Consensus 27 ~~i~l~~g~p--~~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 103 (387)
T PRK08912 27 GAINLGQGFP--DDP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA 103 (387)
T ss_pred CeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence 4688888753 233 4688888888877543 22221 24667777777765443 466 899999999999988
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+... ..+++.|++.+++|..+.. .+...|..+...+... ..+ -|++++++.+.. +++++
T Consensus 104 ~~~~--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~--------------~~~~~l~~~~~~---~~~~v 163 (387)
T PRK08912 104 LLAL--VEPGDEVVLFQPLYDAYLP-LIRRAGGVPRLVRLEPPHWR--------------LPRAALAAAFSP---RTKAV 163 (387)
T ss_pred HHHh--cCCCCEEEEeCCCchhhHH-HHHHcCCEEEEEecCcccCc--------------CCHHHHHHHhCc---cceEE
Confidence 8842 3456778888888876543 3344444333222211 011 178899888863 45555
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhhccCCCC-ch--hhhhhhcC-CCCcEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYFGVTP-DL--TTLGKIIG-GGLPVG 323 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~g~~p-Di--~t~sK~lg-~G~~iG 323 (476)
++...+|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+... .....+... ++ .+|||.++ +|+|+|
T Consensus 164 ~l~~p~NPtG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 242 (387)
T PRK08912 164 LLNNPLNPAGKVFPREE-LALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVG 242 (387)
T ss_pred EEeCCCCCcCcccCHHH-HHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeE
Confidence 55555667787776555 999999999999999999999877 433111 111112212 22 37999999 899999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
|+++++++++.+.. ......++.++..+.++.++|....+ +++.++++++.+++.+.|++. ++.......|
T Consensus 243 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~g~ 315 (387)
T PRK08912 243 FVCAAPPLLRVLAK---AHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI----GFPVLPSQGT 315 (387)
T ss_pred EEecCHHHHHHHHH---HHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCcc
Confidence 99999999888763 11223456667777777776642111 234455566666666666543 3222222345
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.++++.+..... .....++++.|+ ++||++.|+. .+.+|+++...++++++++++|.+++.
T Consensus 316 ~~l~~~l~~~~~----------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 316 YFLTVDLAPLGL----------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARR 385 (387)
T ss_pred eEEEecccccCC----------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 566777643110 011256777776 5799998863 246788888889999999999998875
Q ss_pred H
Q 011856 473 R 473 (476)
Q Consensus 473 ~ 473 (476)
+
T Consensus 386 ~ 386 (387)
T PRK08912 386 R 386 (387)
T ss_pred c
Confidence 3
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=210.19 Aligned_cols=330 Identities=13% Similarity=0.033 Sum_probs=210.4
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC-----CC-CeEEEeCCHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-----SI-EMVRFVNSGTE 166 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~-----~~-e~v~~~~sGse 166 (476)
..|+.++||..|. ..++ .++.+.+++.+.+.....|. +..+++.++++++.+.++ +. ++|++|+|+++
T Consensus 25 ~~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~ 101 (393)
T TIGR03538 25 PASKPPIALSIGE--PKHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE 101 (393)
T ss_pred hcCCCeEEecCCC--CCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence 3567778888774 2333 57889999988775433332 234667778887766532 34 47999999999
Q ss_pred HHHHHHHHHHhccCCc--eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
++..+++.. ...++ .|++.+++|.++.. .....|..+..++.....++. -|++++++.+.+
T Consensus 102 al~~~~~~l--~~~gd~~~vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~-- 164 (393)
T TIGR03538 102 ALFAFAQAV--INPGQAPLVVMPNPFYQIYEG-AALLAGAEPYFLNCTAENGFL------------PDFDAVPESVWR-- 164 (393)
T ss_pred HHHHHHHHH--cCCCCcceEEecCCCCcchHH-HHHhcCCeEEEeeccccCCCC------------CCHHHHHHHHhh--
Confidence 999999842 22333 37777888877543 334445443332221111110 178888887753
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc--cc-hh---hccCC--CCchh---hh
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GG-AQ---EYFGV--TPDLT---TL 312 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~-~~---~~~g~--~pDi~---t~ 312 (476)
++++|++...+|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+. .. .. ...+. .+.++ +|
T Consensus 165 -~~k~i~l~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 165 -RCQLLFVCSPGNPTGAVLSLDT-LKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred -cceEEEEeCCCCCcCcccCHHH-HHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 4566655555667787776554 999999999999999999999877 4321 11 11 11111 12232 79
Q ss_pred hhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 313 GKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 313 sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||.++ +|+|+||+++++++++.+.. .....+++.+++.+.++.+++..-+. ....+.++++.+.+.+.|++.
T Consensus 243 SK~~~~~GlRvG~~i~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--- 316 (393)
T TIGR03538 243 SKRSNLPGLRSGFVAGDAEILKAFLR---YRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--- 316 (393)
T ss_pred hhhcCCcccceEEEecCHHHHHHHHH---HHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 99987 79999999999999887763 22223456678888887777631100 223334444555555555442
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------------CcceEEeCCCcH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------FEAGFTSLAHSS 457 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------~~~~~~~~~~t~ 457 (476)
+....+..|.++++.+.. + ..++++.|+ ++||.+.|+. .+.+|+++..++
T Consensus 317 --~~~~~p~gg~f~~~~~~~------------~---~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~ 379 (393)
T TIGR03538 317 --LDLELPDAGFYLWPKVPG------------D---DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPL 379 (393)
T ss_pred --CcccCCCeeEEEEEECCC------------C---HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCH
Confidence 112235567788887741 1 146777776 5799997764 135788888899
Q ss_pred HHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKV 470 (476)
Q Consensus 458 e~i~~~~~~l~~~ 470 (476)
+++++++++|++.
T Consensus 380 ~~l~~~l~~l~~~ 392 (393)
T TIGR03538 380 EECVEAAERIRSF 392 (393)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=209.84 Aligned_cols=343 Identities=10% Similarity=0.066 Sum_probs=213.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~a 171 (476)
..++|+..+. ..++ .++.+.+++.+.+.+.. .|. +..++++++++++.+.++ ..++|++++|+++|+..+
T Consensus 33 ~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 33 RSIVDLTVGE--PDFD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CCEEEcCCCC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 3466777664 2223 47889999998887532 232 234778888888887654 468899999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++. ....++.|++.+++|.++... +...+..+...+.+...+. . -|++++++.++. ++++++
T Consensus 110 ~~~--~~~~gd~vl~~~p~y~~y~~~-~~~~~~~~~~v~~~~~~~~-----------~-~~~~~l~~~~~~---~~~~v~ 171 (402)
T PRK06107 110 LMA--TLEAGDEVIIPAPYWVSYPDM-VLANDGTPVIVACPEEQGF-----------K-LTPEALEAAITP---RTRWLI 171 (402)
T ss_pred HHH--hcCCCCEEEEecCCCcCHHHH-HHHcCCEEEEecCCcccCC-----------C-CCHHHHHhhcCc---CceEEE
Confidence 873 234567788888877765433 3333322222111111111 0 167889888763 455555
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCc-cccccc-hh-hc-cCCCCchh---hhhhhcC-CCCcE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGG-AQ-EY-FGVTPDLT---TLGKIIG-GGLPV 322 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~-~~-~~-~g~~pDi~---t~sK~lg-~G~~i 322 (476)
+...+|++|.+.+.++ +++|.++|++| |+++|+||+|..+ ..+..+ .. .. .+....++ +|||.++ .|+|+
T Consensus 172 l~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi 250 (402)
T PRK06107 172 LNAPSNPTGAVYSRAE-LRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRI 250 (402)
T ss_pred EECCCCCCCcCcCHHH-HHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccce
Confidence 5444567787776555 99999999998 9999999999876 333211 11 11 11112333 6899998 89999
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
||+++++++++.+.. .....+++.+.+++.++..+|+.-.. .+..+.++++.+.+.+.|++. .++....+..
T Consensus 251 G~~~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~g~~~~~p~g 324 (402)
T PRK06107 251 GYAAGPADLIAAINK---LQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI---PGLSCLVPDG 324 (402)
T ss_pred eeeecCHHHHHHHHH---HHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccCCCc
Confidence 999999999988863 22333567788888888887742110 222334444445555555432 0222222344
Q ss_pred ceeEEEEEecCCCcCchhhcccch---HHHHHHHHHH-HHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSET---TKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l-~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
|.++|+.+..-. ....+.. ....++...+ .++||.+.|+. .+++|+++..+++++++++++|.+.++
T Consensus 325 g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~ 399 (402)
T PRK06107 325 AFYLYVNCAGLI-----GKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVA 399 (402)
T ss_pred ceEEeeeccccc-----ccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 666677662100 0000000 0123555554 57899999873 246889988999999999999999988
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 400 ~~ 401 (402)
T PRK06107 400 AL 401 (402)
T ss_pred hc
Confidence 75
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-24 Score=210.22 Aligned_cols=319 Identities=16% Similarity=0.080 Sum_probs=209.1
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
.+..+||+..|. ++++ .+|.+.+++.+. ... ..|+.....+|.+.+++++. .+++|++++|+++++..+++..
T Consensus 50 ~~~~~i~l~~n~--~p~~-~~~~v~~a~~~~-~~~--~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~ 123 (380)
T PLN03026 50 KPEDIVKLDANE--NPYG-PPPEVLEALGNM-KFP--YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV 123 (380)
T ss_pred CccceEEccCCC--CCCC-CCHHHHHHHHhh-Hhh--ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh
Confidence 356889988875 4555 577888887652 221 22344445678888888876 6789999999999999998842
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...++.|++.+++|..+ .......|..+...+...... .|+++|++.++.. ++++|+++.+
T Consensus 124 --~~~gd~Vlv~~P~y~~y-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~~~--~~~~v~l~~P 184 (380)
T PLN03026 124 --LDPGDKIIDCPPTFGMY-VFDAAVNGAEVIKVPRTPDFS--------------LDVPRIVEAVETH--KPKLLFLTSP 184 (380)
T ss_pred --cCCCCEEEEcCCChHHH-HHHHHHcCCEEEEeecCCCCC--------------cCHHHHHHHHhcc--CCcEEEEeCC
Confidence 34557788888888543 233333444333222111011 1789999888432 5667776666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+|++|.+.+ .+++.++++.. +++|+||+|..| ..+... ....-.++++ +|||.+| +|+|+||++++++
T Consensus 185 ~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~ 257 (380)
T PLN03026 185 NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLS 257 (380)
T ss_pred CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCccccceeeecCHH
Confidence 778888888 66667777654 899999999887 433211 1111123332 7999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+.... ..++.+.+++.++.++|+..+- ++..+.++++++++.+.|+++ +.....+..|.++++.+.
T Consensus 258 ~i~~l~~~~-----~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~p~~~~f~~~~~~ 328 (380)
T PLN03026 258 IIEYLWRAK-----QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV----PFLEPYPSDANFILCRVT 328 (380)
T ss_pred HHHHHHHhc-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCeECCCCCeEEEEECC
Confidence 998876321 2356788888888888852111 234445555555565555543 322223556778887764
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.. ....++.+.|+++||.++++. .+.+|+++. +++++++++++|+++
T Consensus 329 ~~-------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 329 SG-------------RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred CC-------------CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 21 012578889999999998763 245788876 677889999888753
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=208.12 Aligned_cols=314 Identities=17% Similarity=0.168 Sum_probs=207.9
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.++|||..+. +.++ .+|++++++.+++.....|+.+. ..++.+.+++++. ..+++++++|+++++..+++..
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y~~~~--~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l-- 91 (346)
T TIGR01141 19 KEVIKLNSNE--NPFG-PPPKAKEALRAEADKLHRYPDPD--PAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF-- 91 (346)
T ss_pred CceEEccCCC--CCCC-CCHHHHHHHHHhHHHhhcCCCCC--HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh--
Confidence 4799999873 3444 58899999998875443333222 3677788888775 5789999999999998888742
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
..+++.|++.+++|..+ .......|..+...+.... + ..|++++++.+. +++++|+++..++
T Consensus 92 ~~~gd~v~~~~p~y~~~-~~~~~~~g~~~~~~~~~~~-~-------------~~d~~~l~~~~~---~~~~~v~l~~p~N 153 (346)
T TIGR01141 92 LEPGDAVLVPPPTYSMY-EISAKIHGAEVVKVPLDED-G-------------QLDLEDILVAID---DKPKLVFLCSPNN 153 (346)
T ss_pred cCCCCEEEEcCCCHHHH-HHHHHHcCCeEEEeccCCC-C-------------CCCHHHHHHhcC---CCCCEEEEeCCCC
Confidence 24557788888877432 2223333443332211110 1 127899988764 2567777776677
Q ss_pred CCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~ 330 (476)
++|.+.+ ++++.++|+.+ |+++|+||+|.++ ..+... ......++++ ++||.++ +|+|+||++++++
T Consensus 154 ptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 227 (346)
T TIGR01141 154 PTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE 227 (346)
T ss_pred CCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH
Confidence 8899988 55566666655 9999999999877 322111 1122223433 7999997 6999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+.+. ..+++.+++++.++.++++.... .+..++++++.+++++.|+++. ++ ...+..|.++++.+.
T Consensus 228 ~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~-~~~~~~g~~~~~~~~ 298 (346)
T TIGR01141 228 IIDALNKV-----RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLP---GL-EVYPSDANFVLIRFP 298 (346)
T ss_pred HHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-EECCCcCCEEEEecC
Confidence 99888642 12456788888888777753321 3344555556666666665431 22 223445778787763
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
. ...++.+.|.++||++.++. ...+|+++. +++++++++++|+
T Consensus 299 ~---------------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 299 R---------------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 2 12578889999999999874 245788865 8899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=209.71 Aligned_cols=341 Identities=15% Similarity=0.092 Sum_probs=209.4
Q ss_pred CCEEEecccChhhccCC-C-CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011856 98 GNEYIDYVGSWGPAIIG-H-ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG-~-~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA 167 (476)
|+.+|++..|-. ..++ . .++++.+++.+.+..+...+| ..+++..+++++.+..+ .+++|++++|+++|
T Consensus 51 ~~~~i~l~~G~P-~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~a 129 (430)
T PLN00145 51 PRPVLPLGHGDP-SAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQA 129 (430)
T ss_pred CCCeeeCCCCCC-CCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHH
Confidence 667888887722 1122 2 478899999998876432222 23566666666655433 46899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++.. ..+++.|++.+++|..+.. .....|..+...++....+. . -|+++++++++.+ ..
T Consensus 130 l~l~~~~l--~~~Gd~Vlv~~P~y~~y~~-~~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~~--~~ 192 (430)
T PLN00145 130 IEIIMSVL--AQPGANILLPRPGYPLYEA-RAVFSGLEVRHFDLLPERGW---------E---VDLEGVEALADEN--TV 192 (430)
T ss_pred HHHHHHHh--cCCCCEEEEcCCCCccHHH-HHHHcCCEEEEeeCCcccCC---------c---CCHHHHHHHhCcC--ce
Confidence 99999842 2456788888998887543 33334443332221111110 0 1789999888642 44
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchh---hhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~---t~sK~lg-~G~~ 321 (476)
++++++| +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+..+ ....++-...++ +|||.++ +|||
T Consensus 193 ~i~i~~P-~NPtG~v~~~~~-l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~R 270 (430)
T PLN00145 193 AMVIINP-NNPCGSVYSYEH-LAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWR 270 (430)
T ss_pred EEEEeCC-CCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCee
Confidence 5555566 566787776555 999999999999999999999877 433211 111122122233 7999977 8999
Q ss_pred EEEEEe--cHHHHH------hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 322 VGAYGG--RRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 322 iG~~~~--~~~i~~------~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+||+++ ++.+++ .+.. . .....+.+.+.+.++..+|+.-.+ ++.++.++++.+.+.+.|++
T Consensus 271 lG~iv~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~---- 342 (430)
T PLN00145 271 LGWIATCDPNGILKETKVVDSIRN---Y-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE---- 342 (430)
T ss_pred EEEEEEecchhhhhhhHHHHHHHH---H-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 999986 344433 2221 1 112224567888888777763111 23344444445545454443
Q ss_pred cCCce-E-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHH
Q 011856 391 AGHAI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 391 ~~~~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~ 463 (476)
++... . .+..|.++++.+...... +.....+++..++ ++||++.|+. .+++|+++..++++++++
T Consensus 343 ~~g~~~~~~P~ga~y~~v~l~~~~~~--------~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~a 414 (430)
T PLN00145 343 IKCITCPHKPEGSMFVMVKLDLSCLS--------GIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDG 414 (430)
T ss_pred CCCCCCCcCCCeeeEEEeccChhhcC--------CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHH
Confidence 32222 1 245666777766321000 0001245665554 6799999873 346789888899999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|.+++.+.
T Consensus 415 l~rl~~~~~~~ 425 (430)
T PLN00145 415 LERLKSFCLRH 425 (430)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=208.94 Aligned_cols=346 Identities=13% Similarity=0.041 Sum_probs=217.4
Q ss_pred EEEcCCCEEEecccChhhcc--CCCCcHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhC---------CCCC
Q 011856 93 MWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAV---------PSIE 156 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~l~~~--~~~~---~~~~~~~~la~~l~~~~---------~~~e 156 (476)
+.+..|+.+|||..|..... + ..++.+.+++.+.+... ..|. +..++++.+++++.+.+ -+++
T Consensus 27 ~~~~~~~~~i~l~~g~p~~~~~~-~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 27 KPSPSPKSIIKLSVGDPTLDGNL-LTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred ccCCCCCCeeecCCcCCCCcCCC-CCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 44467888899998843210 1 25788999998887752 2232 12466677777776532 1468
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
++++|+|+++++..+++.. ...++.|++.+++|..+. ......|..+...+....... --|+++|
T Consensus 106 ~i~it~G~~~al~~~~~~~--~~~gd~vlv~~P~y~~~~-~~~~~~g~~~~~i~~~~~~~~------------~~d~~~l 170 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTAL--CDEGDNILVPAPGFPHYE-TVCKAYGIEMRFYNCRPEKDW------------EADLDEI 170 (412)
T ss_pred hEEEeCChHHHHHHHHHHh--cCCCCEEEEccCCcccHH-HHHHHcCCEEEEEecCccccC------------cCCHHHH
Confidence 9999999999999999842 235677888888887743 334444443332221100000 0178899
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCC-Cch--hh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVT-PDL--TT 311 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~-pDi--~t 311 (476)
++.++. ++++|++...+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.. .....+.-. +-+ -+
T Consensus 171 ~~~~~~---~~~~i~~~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S 246 (412)
T PTZ00433 171 RRLVDD---RTKALIMTNPSNPCGSNFSRKH-VEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGG 246 (412)
T ss_pred HHHhcc---CceEEEEeCCCCCCCcccCHHH-HHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEcc
Confidence 888764 4555666555667787776555 999999999999999999999888 44321 111111111 112 27
Q ss_pred hhhhcC-CCCcEEEEEe------cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHH
Q 011856 312 LGKIIG-GGLPVGAYGG------RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGEL 380 (476)
Q Consensus 312 ~sK~lg-~G~~iG~~~~------~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~----~~~~~~~~~l 380 (476)
|||.++ +|+|+||+++ .+++++.+... ....++.+++.+.++.++|+.- .+.+. ++++++.+.+
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l 321 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRL----GMLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAMVL 321 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHH----hhccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH
Confidence 999997 8999999986 24577666521 1123567888888888877531 12333 3344444444
Q ss_pred HHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCC
Q 011856 381 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAH 455 (476)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~ 455 (476)
.+.|++. .++....+..|.++++.+...... +.....++++.|+ ++||.+.++. .+.+|+++..
T Consensus 322 ~~~L~~~---~~~~~~~p~gg~f~~~~l~~~~~~--------~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~ 390 (412)
T PTZ00433 322 YNHIGEC---IGLSPTMPRGSMFLMSRLDLEKFR--------DIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR 390 (412)
T ss_pred HHHHhcC---CCCcccCCCeeEEEEEEechhhcC--------CCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC
Confidence 4444332 122222344577788777421100 0001256788887 5799999874 2467888888
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011856 456 SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++++++++|.++++..
T Consensus 391 ~~e~l~~al~~l~~~~~~~ 409 (412)
T PTZ00433 391 PVEVLREAVERIKAFCERH 409 (412)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8999999999999988754
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=208.51 Aligned_cols=317 Identities=17% Similarity=0.159 Sum_probs=202.4
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
+.++++..|. ++++ .+|.+.+++.+.+.....| +.....+|.+.+++.++ .+++|++++|+++++..+++..
T Consensus 43 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l-- 115 (370)
T PRK09105 43 EGAVFLNANE--CPLG-PSPAARDAAARSAALSGRY--DLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF-- 115 (370)
T ss_pred CCcEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH--
Confidence 3456666553 3454 6889999998877653333 43346788888888876 6889999999999999999842
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
...++.|++.+++|..+.. .....|..+...+.. .+. ..|++++++.. ++++++++...+|
T Consensus 116 ~~~gd~Vli~~P~y~~~~~-~~~~~g~~~~~v~~~--~~~------------~~d~~~l~~~~----~~~~~v~l~nP~N 176 (370)
T PRK09105 116 TSPTAGLVTADPTYEAGWR-AADAQGAPVAKVPLR--ADG------------AHDVKAMLAAD----PNAGLIYICNPNN 176 (370)
T ss_pred cCCCCEEEEeCCChHHHHH-HHHHcCCeEEEecCC--CCC------------CCCHHHHHhcC----CCCCEEEEeCCCC
Confidence 3456778888888866533 344445443332211 110 01677776652 1344555444466
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
++|.+.+.++ +++|.+.|+ +|++||+||+|..|.... ...+..+..++++ +|||.+| .|+|+||+++++++++
T Consensus 177 PTG~~~~~~~-l~~l~~~~~-~~~~lIvDEaY~~f~~~~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 177 PTGTVTPRAD-IEWLLANKP-AGSVLLVDEAYIHFSDAP-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA 253 (370)
T ss_pred CCCcCcCHHH-HHHHHHhCC-CCcEEEEECchHHhccCc-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence 7888876444 777777654 599999999997662111 1112222234543 7999998 8999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+.. . ..++.+.+++.++.++|+..+- ++..++++++.+++.+.|++ +++. ..+..|.|+.+.+..
T Consensus 254 ~l~~---~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~-~~~~~~~f~~~~~~~-- 320 (370)
T PRK09105 254 KLAR---F---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK----KGYK-CTPSQANCFMVDVKR-- 320 (370)
T ss_pred HHHh---c---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCC-cCCCCCcEEEEeCCC--
Confidence 8863 1 2345677777787777752110 23334455555555555554 3322 224566676655421
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccC---CCcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
+ ..++.+.|+++||.+... ..+++|+++. +++++++++++|++++
T Consensus 321 ----------~---~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 321 ----------P---AKAVADAMAKQGVFIGRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVM 368 (370)
T ss_pred ----------C---HHHHHHHHHHCCcEEecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence 1 257888999999998422 1346788866 6788999999998775
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=208.46 Aligned_cols=302 Identities=15% Similarity=0.095 Sum_probs=200.2
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.+++|+.+|. +++|...+.+.+ ..+.. ||... .+|.+.+++++ +.++|++++|+++++..++. .
T Consensus 20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~-----yp~~~-~~Lr~~ia~~~-~~~~I~it~Gs~~al~~~~~---~- 83 (330)
T PRK05664 20 ADWLDLSTGI--APWPWPVPAIPA---DAWAR-----LPETD-DGLEAAARAYY-GAPQLLPVAGSQAAIQALPR---L- 83 (330)
T ss_pred HHheeecCCc--CCCCCCCcccCH---HHHHh-----CCCCh-HHHHHHHHHHh-CCCCEEECcCHHHHHHHHHH---c-
Confidence 3578888887 677766444432 22222 23322 57777777777 67899999999999988764 2
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
..++.|++.+++|.+....+ ...|. +++.+| ++++++.+++ ...+++++|+ |+
T Consensus 84 ~~gd~v~v~~P~y~~~~~~~-~~~g~-------------------~~~~v~---~~~~~~~~~~---~~~v~l~nP~-NP 136 (330)
T PRK05664 84 RAPGRVGVLSPCYAEHAHAW-RRAGH-------------------QVRELD---EAEVEAALDS---LDVLVVVNPN-NP 136 (330)
T ss_pred cCCCEEEEcCCChHHHHHHH-HHcCC-------------------eEEEec---hhhHhhhhcC---CCEEEEeCCc-CC
Confidence 45678999999998754332 22232 233333 3456666642 2346777775 56
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+|.+.+.++ +++|.++|+++|++||+||+|.++ ....... +.-.++++ ||||++| +|+|+||+++++++++
T Consensus 137 TG~~~s~~~-l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~---~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~ 212 (330)
T PRK05664 137 TGRRFDPAR-LLAWHARLAARGGWLVVDEAFMDNTPQHSLAA---CAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR 212 (330)
T ss_pred CCCccCHHH-HHHHHHHHHhcCCEEEEECCcccCCCcccccc---cccCCCEEEEeeccccccCCCcceEEEEeCHHHHH
Confidence 777776555 999999999999999999999877 3221111 11123333 7999999 8999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+... ..+++.+.+++.++.++|+.... +..+++++++.+++.+.|++. ++. ...+.+.++++.+.
T Consensus 213 ~~~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~-~~~~~~~f~~~~~~--- 279 (330)
T PRK05664 213 ALAEL-----LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH----GLT-PAGGCALFQWVRTE--- 279 (330)
T ss_pred HHHHh-----cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC----CCc-ccCCcceEEEEecC---
Confidence 88632 22456678888888888863211 334555555666666666553 321 11222355555431
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+ ..++.+.|.++||.+...+ .+++|+++..+++++++++++|+++.++
T Consensus 280 ----------~---~~~~~~~l~~~gi~v~~f~~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 280 ----------D---AAALHEFLARRGILTRLFEQPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred ----------C---HHHHHHHHHHCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 1 2577888999999998653 3568888887888999999999887654
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=207.10 Aligned_cols=334 Identities=16% Similarity=0.141 Sum_probs=210.4
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
.++||..+... .. .++.+.+++.+.+.... .|. +..++++++++.+.+.++ .++ +|++++||++|+..+
T Consensus 25 ~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFPD--ED-GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 45787777421 22 35678888877776532 222 124566677776665553 244 799999999999998
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+.. ...+++.|++..++|++.. ..+...|..+...+...... ... -|+++|++.+++ ++++|+
T Consensus 102 ~~~--~~~~gd~vli~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~~~~~~---~~~~v~ 164 (387)
T PRK07777 102 VLG--LVEPGDEVLLIEPYYDSYA-AVIAMAGAHRVPVPLVPDGR--------GFA---LDLDALRAAVTP---RTRALI 164 (387)
T ss_pred HHH--hcCCCCEEEEeCCCchhhH-HHHHHCCCEEEEeecCCccC--------CCc---CCHHHHHHhcCc---ccEEEE
Confidence 873 2345678888888887753 44444444332221111000 000 178999888863 466777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc-CCCC-c--hhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-GVTP-D--LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~-g~~p-D--i~t~sK~lg-~G~~iG~ 324 (476)
+++.+|++|.+.+ .+.+++|.++|++|++++|+||+|.++ ..+.. .....+ +... + +.+|||.++ +|+|+||
T Consensus 165 l~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 243 (387)
T PRK07777 165 VNSPHNPTGTVLT-AAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW 243 (387)
T ss_pred EcCCCCCCCccCC-HHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEE
Confidence 7766777888775 445999999999999999999999877 43321 111111 1111 2 237999999 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+.. .....+++.+.+.+.++..+++..+. +.+.+.++++.+.+.+.|++. ++....+..|.
T Consensus 244 ~~~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~g~~ 316 (387)
T PRK07777 244 ACGPAPLIAAVRA---AKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA----GFEVHDSAGTY 316 (387)
T ss_pred EecCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCCccCCCcce
Confidence 9999999887763 22233455566666666666642211 334455666666666666553 32222223455
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC---------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~---------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
++++.+..... ....++++.|+ ++||.+.|+. .+.+|+++..+++++++++++|.++..
T Consensus 317 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 317 FLCADPRPLGY-----------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred EEEecccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 66666532110 01257888886 5799998863 135788888899999999999987653
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=206.38 Aligned_cols=302 Identities=16% Similarity=0.071 Sum_probs=200.1
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar 176 (476)
.+++||.+|. +++|...+.+.. ..+. .||... .+|.+.++++++ ..++|++++|++|++.....
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~~-----~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~--- 89 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAWR-----RLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA--- 89 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHHH-----hCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH---
Confidence 4689999998 888875333321 2222 246555 899999999886 35899999999999986544
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
.+ +++++++.+++|.++...+ ...|.. ++.++.++ +.+++ . ...+++++|+
T Consensus 90 ~~-~~g~v~v~~P~y~~y~~~~-~~~g~~-------------------~~~v~~~~-~~~~~---~---~~~v~l~nPn- 140 (339)
T PRK06959 90 LL-PRGRVGIAPLAYSEYAPAF-ARHGHR-------------------VVPLDEAA-DTLPA---A---LTHLIVVNPN- 140 (339)
T ss_pred hc-CCCeEEEcCCCcHHHHHHH-HHCCCE-------------------EEeecccc-hhccc---c---CCEEEEeCCC-
Confidence 33 3456888888887744333 333322 22333222 22211 1 1356677775
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i 331 (476)
|++|.+.+.++ +++|.+.|.++++++|+||+|..| ...... ...+ .++++ ||||.+| +|+|+||+++++++
T Consensus 141 NPTG~~~s~~~-l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~--~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~l 216 (339)
T PRK06959 141 NPTAERLPAAR-LLRWHAQLAARGGTLIVDEAFADTLPAASLA--AHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPAL 216 (339)
T ss_pred CCCCCCCCHHH-HHHHHHHHHHcCCEEEEECCCccCCCcccch--hccC-CCCEEEEecChhhcCCcchheEEEecCHHH
Confidence 56777776555 888888899999999999999887 321111 1111 23433 8999999 89999999999999
Q ss_pred HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec
Q 011856 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (476)
Q Consensus 332 ~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (476)
++.+... ...++.|.+++.++.++|+.-.- ++..++++++++++.+.|+++ ++. +...+.++++.+.+
T Consensus 217 i~~l~~~-----~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~--~~~~~~f~~~~~~~ 285 (339)
T PRK06959 217 LAALRDA-----LGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH----GFA--VHATPLFSWTDDPR 285 (339)
T ss_pred HHHHHHh-----cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCC--ccCcceEEEEeCCC
Confidence 9988742 23466788899888888852111 334455555566666666554 322 12345566665421
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++.+.|.++||+++..+ .+++|+++..+++++++++++|+++++.+
T Consensus 286 ----------------~~~l~~~l~~~GI~vr~~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~ 334 (339)
T PRK06959 286 ----------------AAALHAALARRGIWTRYFAPPPSVRFGLPADEAEWQRLEDALAECVPTL 334 (339)
T ss_pred ----------------HHHHHHHHHhCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 2578889999999998753 34688888778999999999999887754
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=208.13 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=208.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
|..++||..+.. .+. .++.+.+++.+.+.... .|+ +..+++.++++++.+..+ .+++|++++|+++|+.
T Consensus 28 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 104 (386)
T PRK07550 28 DGPLIDLSQAVP--GYP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW 104 (386)
T ss_pred CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 344678887742 222 47788888887765322 121 245667788888876543 4689999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ...++.|++.+++|.++.. .+...|..+..++.....+. ..|++++++.+++ ++++
T Consensus 105 ~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~------------~~~~~~l~~~~~~---~~~~ 166 (386)
T PRK07550 105 AAMVTL--AGAGDEVILPLPWYFNHKM-WLDMLGIRPVYLPCDEGPGL------------LPDPAAAEALITP---RTRA 166 (386)
T ss_pred HHHHHh--cCCCCEEEEcCCCCcchHH-HHHhcCCEEEEEecCCCcCC------------CCCHHHHHHHhcc---cCcE
Confidence 988852 2456778888888866533 33444443332221100111 0178899998874 3444
Q ss_pred -EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhhccCCCCc---hhhhhhhcC-CCCc
Q 011856 250 -IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYFGVTPD---LTTLGKIIG-GGLP 321 (476)
Q Consensus 250 -vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~g~~pD---i~t~sK~lg-~G~~ 321 (476)
+++.| +|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+... .....+...+ +.+|||.++ +|+|
T Consensus 167 v~~~~P-~NPtG~~~~-~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 244 (386)
T PRK07550 167 IALVTP-NNPTGVVYP-PELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHR 244 (386)
T ss_pred EEEeCC-CCCCCcccC-HHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccc
Confidence 55555 466777765 555999999999999999999999887 322111 1111111122 348999999 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+.. .....+.+.+.+++.++...++.+++ ++..++++++.+.+.+.|.+. ..+ ...+.
T Consensus 245 iG~i~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~-~~~~~ 317 (386)
T PRK07550 245 VGAVVASPARIAEIEK---FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL---PGW-ELLAS 317 (386)
T ss_pred eEeeecCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-eeCCC
Confidence 9999999999887763 22233455678888887777753321 233444555555555555543 122 11233
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCC-CcHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKV 470 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~-~t~e~i~~~~~~l~~~ 470 (476)
.|.++++.+.... ....+++..|+ ++||.+.|+. ...+|+++. .+++++++++++|.++
T Consensus 318 g~~~~~~~~~~~~------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 318 GAYFAYVRHPFPD------------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred ceEEEEecCCCCC------------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 4566676663211 11256777765 6799998863 246788776 4789999999999864
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=210.42 Aligned_cols=318 Identities=17% Similarity=0.165 Sum_probs=208.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.+|||..+. ..+| .++.+.+++.+.+..... |+.....++.+.+++++. .+++|++++|.++++..+++. ..
T Consensus 23 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~--y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~--~~ 95 (352)
T PRK03321 23 GAIKLSSNE--TPFG-PLPSVRAAIARAAAGVNR--YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQA--TA 95 (352)
T ss_pred cceeccCCC--CCCC-CCHHHHHHHHHHHHhcCc--CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHH--hc
Confidence 378888774 3344 467899999887764332 344456677777777775 567999999999888888773 23
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
.+++.|++..++|.. +.......|..+...+.....+ .|++++++.++. ++++|+++.++++
T Consensus 96 ~~gd~Vli~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~--------------~~~~~l~~~~~~---~~~~v~l~~p~NP 157 (352)
T PRK03321 96 GPGDEVIFAWRSFEA-YPILVQVAGATPVQVPLTPDHT--------------HDLDAMAAAITD---RTRLIFVCNPNNP 157 (352)
T ss_pred CCCCEEEeCCCCHHH-HHHHHHHcCCEEEEccCCCCCC--------------CCHHHHHHhhcc---CCCEEEEeCCCCC
Confidence 456778777777643 2223333343332221110111 178999888863 4566666666777
Q ss_pred CCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CCCcEEEEEecHH
Q 011856 259 SGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+|.+.+ .++|.++|++ +|+++|+||+|.+| ..+.. .........++++ +|||.+| +|+|+||++++++
T Consensus 158 tG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~ 233 (352)
T PRK03321 158 TGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPE 233 (352)
T ss_pred cCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHH
Confidence 899888 5667777766 69999999999888 43321 1122222234544 7999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.+++++.++.++|+..+. .+..+++.+..+.+.+.|++ .++. ..+..|.++++.+.
T Consensus 234 ~~~~~~~~-----~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~-~~~~~g~~i~i~l~ 303 (352)
T PRK03321 234 VIAALRKV-----AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRA----AGWT-VPPSQANFVWLPLG 303 (352)
T ss_pred HHHHHHHh-----cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCc-cCCCCCCEEEEeCC
Confidence 99988741 24567889999988888752221 12222333333444444443 3322 12345788887763
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.. ..++.+.|.++||.+.+.+...+|+++ .+.+++++++++|+++++
T Consensus 304 ~~---------------~~~~~~~l~~~gI~v~~~~~~~iRi~~-~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 304 ER---------------TADFAAAAAEAGVVVRPFAGEGVRVTI-GAPEENDAFLRAARAWRA 350 (352)
T ss_pred CC---------------HHHHHHHHHHCCEEEEccCCCcEEEee-CCHHHHHHHHHHHHHHhc
Confidence 11 257888899999999987655688886 588999999999998765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=206.08 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=203.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
++.+|||..+. +.++ .+|.+.+++.+.+.... ..|+.....+|.+.+++++. .+++|++++|+++++..+++..
T Consensus 23 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~-~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l- 97 (353)
T PRK05387 23 LAKLIKLNTNE--NPYP-PSPKVLEAIRAALGDDL-RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF- 97 (353)
T ss_pred ccceeeccCCC--CCCC-CCHHHHHHHHHHhhhhh-hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-
Confidence 35678998885 3444 47899999988776422 22343334678888888775 6789999999999999999842
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
...++.|++.+++|.. +.......|..+...+.....+ -|++++++ . ....++++| +
T Consensus 98 -~~~gd~vlv~~P~y~~-~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~---~---~~~v~~~~P-~ 154 (353)
T PRK05387 98 -FNHDRPLLFPDITYSF-YPVYAGLYGIPYEEIPLDDDFS--------------IDVEDYLR---P---NGGIIFPNP-N 154 (353)
T ss_pred -cCCCCEEEEeCCCHHH-HHHHHHHcCCEEEEeecCCCCC--------------CCHHHHHh---c---CCEEEEeCC-C
Confidence 3456778888888744 3333444454333222111011 16777652 1 223444455 6
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~ 330 (476)
|++|.+.+ .+++.++++++ ++++|+||+|..| ... . ....+..++++ +|||.++ .|+|+||++++++
T Consensus 155 NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~~~-~--~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~ 227 (353)
T PRK05387 155 APTGIALP----LAEIERILAANPDSVVVIDEAYVDFGGES-A--IPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPE 227 (353)
T ss_pred CCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCCcc-h--HHHHhhCCCEEEEEehhHhhcchhhhceeeecCHH
Confidence 67888888 55555666554 9999999999877 221 1 11111123322 7999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+..... ...+++.+.+++.++.++|+..+. ++..+++.++.+++.+.|++. ++. ..+..|.++++.+.
T Consensus 228 ~~~~l~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~ 300 (353)
T PRK05387 228 LIEALNRVKN--SFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL----GFE-VLPSKANFVFARHP 300 (353)
T ss_pred HHHHHHHhhc--cCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCe-ECCCcCcEEEEECC
Confidence 9888763211 123456788888888777742111 344555556666666666553 332 12445666666542
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC----cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.. ...++.+.|.++||.+.+.+. ..+|+++. +++++++++++|++++.
T Consensus 301 ~~--------------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 301 SH--------------DAAELAAKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 10 125788889999999865532 35788776 77999999999998764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=202.57 Aligned_cols=330 Identities=18% Similarity=0.156 Sum_probs=216.3
Q ss_pred CcHHHHHHHHHHHHhc-CC----CCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKKG-TS----FGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~-~~----~~~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
.+..|.+++++.+... .+ ..+..++...|+++++++++ ..++|++|+|+.+++..++.. .+..++.||+
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~--l~~~GDeVii 122 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLG--LLNPGDEVIV 122 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHH--HcCCCCEEEE
Confidence 4667888888887763 21 22457888899999998665 356899999999999988884 4567899999
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceee-ccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
+++.|..+.......++.++.....+ ..| ++.. .-..|.+.||..+.+ ++++|+++..+|++|.+.+.
T Consensus 123 ~eP~fd~Y~~~~~maG~tpv~v~~~~-~~g-------~~~s~~~~~D~~~le~~~t~---kTk~Ii~ntPhNPtGkvfsR 191 (420)
T KOG0257|consen 123 FEPFFDCYIPQVVMAGGTPVFVPLKP-KEG-------NVSSSDWTLDPEELESKITE---KTKAIILNTPHNPTGKVFSR 191 (420)
T ss_pred ecCcchhhhhHHhhcCCcceeecccc-ccc-------cccCccccCChHHHHhhccC---CccEEEEeCCCCCcCcccCH
Confidence 99999988777766666654321111 111 0000 012389999999985 68888888888888999877
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhh--ccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCC
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE--YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 338 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~--~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~ 338 (476)
++ |++|.+||++||+++|+||||--+ ..+. .++.. .+.....+.++||+++ .|||+||+++++.++..+.+
T Consensus 192 ee-Le~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~- 269 (420)
T KOG0257|consen 192 EE-LERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFP- 269 (420)
T ss_pred HH-HHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHH-
Confidence 66 999999999999999999999655 5553 22221 1222333457999999 79999999998888877763
Q ss_pred CCccccCCCCCcHHHHHHHHHHHHHh---cC-------CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 339 GPMYQAGTLSGNPLAMTAGIHTLKRL---KE-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 339 ~~~~~~~t~~~~~~~~aaa~aal~~~---~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
......+..+...+.|..+++..- .+ .++...++++++.+.+.|.++ ++....+..+.++++++
T Consensus 270 --vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~adf 343 (420)
T KOG0257|consen 270 --VHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWADF 343 (420)
T ss_pred --HhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEec
Confidence 223334444555555555554422 21 225566777777777777776 33333455677788888
Q ss_pred ecC-CCcCchhh-cccchHHHHHHHHHHH-HCCeEeccCCCc-----------ceEEeCCCcHHHHHHHHHHHHH
Q 011856 409 TEG-PVYNFEDA-KKSETTKFARFYRGML-EEGVYFAPSQFE-----------AGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 409 ~~~-~~~~~~~~-~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~-----------~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
... +...+... ..++ .-.+...|. +.|+.+-|.... .+++++.-+++-++.++++|++
T Consensus 344 s~~~~~~~~~~~~~~~~---d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 344 SLAKSWPFFEEILEKPD---DFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred cccccCCcchhhccCCC---ceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 611 11111000 0111 124555665 558877665311 2355677788888888888873
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=207.58 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=190.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.++||..|. |+++. .... ..||.....+|.+.+++++. ..++|++++|+++++..++++ .
T Consensus 17 ~~i~l~~Ne--np~~~------------~~~~--~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~---~ 77 (332)
T PRK06425 17 RIIDFSANI--NDFMD------------IGDI--SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY---I 77 (332)
T ss_pred CEEEecccc--CCCcC------------hhhc--ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH---h
Confidence 578888886 55530 1111 23577677899999999887 678999999999999998873 3
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
+++++++.+++|..+... ....|..+...+... .+ .|.+.++ +. ++++|+++..+|+
T Consensus 78 -~~~~vv~~~P~y~~y~~~-~~~~G~~v~~vp~~~-~~--------------~~~~~l~----~~--~~k~v~l~nP~NP 134 (332)
T PRK06425 78 -NVGNIIIVEPNFNEYKGY-AFTHGIRISALPFNL-IN--------------NNPEILN----NY--NFDLIFIVSPDNP 134 (332)
T ss_pred -CCCcEEEeCCChHHHHHH-HHHcCCeEEEEeCCc-cc--------------CcHHHHh----hc--CCCEEEEeCCCCC
Confidence 335688888888775433 333444332211100 00 1333333 22 4445554444566
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+|.+.+.++ +++|.++|++||++||+||+|..| ..+........+-.++++ ||||.++ +|+|+||+++++++++
T Consensus 135 TG~~~s~~~-~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~ 213 (332)
T PRK06425 135 LGNLISRDS-LLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK 213 (332)
T ss_pred cCCccCHHH-HHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH
Confidence 777776555 999999999999999999999888 433111111112223333 7999999 9999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+... ...++.+.+++.+. ...+.-. .+...+.++++.+++.+.|++. ++....++.|.++++.+.+
T Consensus 214 ~l~~~-----~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~~~~~~g~f~~~~~~~-- 281 (332)
T PRK06425 214 ISRKI-----TEPWSVCDPAIDFI-RSIDLDYVAKHSLDIMENERSYLINNLEAM----GFRAAGDPSANFITFMIPD-- 281 (332)
T ss_pred HHHHc-----CCCCccCHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHC----CCEECCCCCceEEEEEcCC--
Confidence 88742 12334444433322 1111100 0234455555556666666543 3222124567888887631
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
..++.+.|+++||.+.++.. +++|+++. +++++++++++|++++
T Consensus 282 --------------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 282 --------------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFL 331 (332)
T ss_pred --------------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 25788899999999988632 35677766 6789999999998775
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-23 Score=208.13 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=227.8
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--C---CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--T---SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSG 164 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~---~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sG 164 (476)
.+....+||..++. ++--.......+++.+.+... . .++ +..+++.++++.+....+ .+++|++|+|.
T Consensus 86 ~~~~~~i~f~~g~p-~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~ 164 (459)
T COG1167 86 EDDPSVIDFAGGLP-DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA 164 (459)
T ss_pred cCCCceecCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH
Confidence 34467889988862 221124556666666655431 1 111 234667777777773332 57899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
.+|++.++++ ...+++.|++-+++|++. ...+...|..+..++.. ..|+ |+++||+.++++
T Consensus 165 q~al~l~~~~--l~~pGd~v~vE~PtY~~~-~~~~~~~g~~~~~vp~d-~~G~--------------~~e~le~~~~~~- 225 (459)
T COG1167 165 QQALDLLLRL--LLDPGDTVLVEDPTYPGA-LQALEALGARVIPVPVD-EDGI--------------DPEALEEALAQW- 225 (459)
T ss_pred HHHHHHHHHH--hCCCCCEEEEcCCCcHHH-HHHHHHcCCcEEecCCC-CCCC--------------CHHHHHHHHhhc-
Confidence 9999999884 233567777778899984 44445555544433222 3343 899999999876
Q ss_pred CCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc----hhhccCCCCchhhhhhhcCC
Q 011856 245 GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDLTTLGKIIGG 318 (476)
Q Consensus 245 ~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~~~g~~pDi~t~sK~lg~ 318 (476)
+++++++.|.+.| +|.+.+.+. .++|.++|++||+++|.||.|..| ..+..- +.+..+-+.-+.||||.+..
T Consensus 226 -~~k~~y~~P~~qNPtG~tms~~r-R~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~P 303 (459)
T COG1167 226 -KPKAVYVTPTFQNPTGVTMSLER-RKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAP 303 (459)
T ss_pred -CCcEEEECCCCCCCCCCccCHHH-HHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhccc
Confidence 7889999997755 777776555 999999999999999999999888 443221 11122223335589999999
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHHHhhhcC---
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG---IIDAGKKAG--- 392 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~---L~~~~~~~~--- 392 (476)
|+|+||+++++++++.+. ...+..+.+.+.+.+.+....+. +..+.+++++++..++++ +.+...++.
T Consensus 304 glRlG~vv~p~~~~~~~~---~~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 304 GLRLGYVVAPPELIEKLL---RLKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred ccceeeeeCCHHHHHHHH---HHHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999998887 33455566777887777665554 333444444444444333 323333332
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc-CC--------CcceEEeCC-CcHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ--------FEAGFTSLA-HSSDDIQH 462 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~~--------~~~~~~~~~-~t~e~i~~ 462 (476)
..+..+..|+++|+++... ....++.+.++++|+.+.+ +. .+.+++++. .+++++++
T Consensus 378 ~~~~~p~gG~flwl~l~~~-------------~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~ 444 (459)
T COG1167 378 ATWTRPEGGLFLWLELPEG-------------IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEE 444 (459)
T ss_pred eeeecCCceEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHH
Confidence 2334455688999998542 1236888999999999988 32 124677654 47999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
.+.+|.+++.+.
T Consensus 445 gi~~l~~~~~~~ 456 (459)
T COG1167 445 GIKRLAALLREA 456 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=207.18 Aligned_cols=320 Identities=14% Similarity=0.093 Sum_probs=207.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~a 175 (476)
++.++|+..|. ++++ .+|.+++++.+.+......+|+.....+|.+.+++++. . .++|++++|+++++..++++.
T Consensus 25 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~ 101 (356)
T PRK04870 25 ATGMVKLDAME--NPYR-LPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC 101 (356)
T ss_pred CCCceeCcCCC--CCCC-CCHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh
Confidence 45788887763 4444 68899999999886533233444445677788887775 2 258999999999999988842
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...++.|++.+++|.++ .......|..+...+.....+ -|++++++.++.+ ++++|++...
T Consensus 102 --~~~gd~vlv~~P~y~~~-~~~~~~~g~~~~~i~~~~~~~--------------~d~~~l~~~~~~~--~~~~v~l~~p 162 (356)
T PRK04870 102 --AKPGATVLAPEPGFVMY-RMSAKLAGLEFVGVPLTADFT--------------LDLPAMLAAIAEH--RPALVFLAYP 162 (356)
T ss_pred --cCCCCEEEECCCCHHHH-HHHHHHcCCEEEEecCCCCCC--------------CCHHHHHHHhhcC--CCCEEEEcCC
Confidence 34567788888888764 333444455443322211111 1789999998743 4566666555
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
++++|.+.+.++ +++|.++| ++++|+||+|..| .....-....++...-+-+||| ++ +|+|+||+++++++++
T Consensus 163 ~NPtG~~~~~~~-~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~ 237 (356)
T PRK04870 163 NNPTGNLFDDAD-VERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIA 237 (356)
T ss_pred CCCCCCCCCHHH-HHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHH
Confidence 677888887444 66666666 7899999999877 3211101111111111237999 77 6999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+.... ..++.+.+++.++..+++..+. ++..++++++.+.+.+.|+++ .++ ...+..|.++++.+.+
T Consensus 238 ~~~~~~-----~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~-~~~~~~~~~~~~~~~~-- 306 (356)
T PRK04870 238 ELDKVR-----PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL---PGV-TVFPSAANFILVRVPD-- 306 (356)
T ss_pred HHHHcc-----CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-EECCCCCeEEEEECCC--
Confidence 886421 2345677888777777753211 334455566666666666543 122 2234567777776531
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
..++.+.|.++||.+.++. .+.+|+++. +.+++++++++|+++
T Consensus 307 --------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~ 355 (356)
T PRK04870 307 --------------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAA 355 (356)
T ss_pred --------------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHh
Confidence 1467788899999998753 235678766 688999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=210.86 Aligned_cols=332 Identities=14% Similarity=0.095 Sum_probs=202.6
Q ss_pred EEEecccChhhccCCCCc--HHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---CCCeE--EEeCCHHHH
Q 011856 100 EYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---SIEMV--RFVNSGTEA 167 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~~l~~~~~--~~---~~~~~~~~la~~l~~~~~---~~e~v--~~~~sGseA 167 (476)
..|||..|...++-++.+ +.+.+++.+.++.... |+ +..++++++++++.+... .++++ ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 357877775333333333 6888888777654322 22 234666777777655432 46676 999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+..++++......++.|++.+++|.++. ..+...|..+..++. ++..++ |++++++.+++...
T Consensus 107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~-~~~~~~g~~~v~v~~~~~~~~~~--------------d~~~l~~~~~~~~~ 171 (396)
T PRK09257 107 LRVGADFLKRAFPDAKVWVSDPTWPNHR-AIFEAAGLEVKTYPYYDAATKGL--------------DFDAMLADLSQAPA 171 (396)
T ss_pred HHHHHHHHHHhCCCCeEEECCCCcccHH-HHHHHcCCcEEEEeccccccCcc--------------CHHHHHHHHHhCCC
Confidence 9999875323356788999999998854 344445554433222 111121 78999998875433
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-cc-cchh-hccCCCCch---hhhhhhcC-
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY-GGAQ-EYFGVTPDL---TTLGKIIG- 317 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~-~~~~-~~~g~~pDi---~t~sK~lg- 317 (476)
...++++...+|++|.+.+.++ +++|.++|++||+++|+||+|.+| .. +. .... ...+..+++ .+|||.++
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQ-WDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 4455565666677888776555 999999999999999999999887 32 11 1111 111112233 37999999
Q ss_pred CCCcEEEEEe---cHHH----HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHH
Q 011856 318 GGLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQ 382 (476)
Q Consensus 318 ~G~~iG~~~~---~~~i----~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~ 382 (476)
.|||+||+++ +++. ++.+.. .......+.+++.+.++.+.|+.- .+ ++.+++++++.+.+.+
T Consensus 251 ~GlRiG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~ 327 (396)
T PRK09257 251 YGERVGALSVVAEDAEEADRVLSQLKA---TIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE 327 (396)
T ss_pred ccccceeEEEEeCCHHHHHHHHHHHHH---HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999973 4443 333321 111223344677777766666421 11 2344555555666666
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQ 461 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i~ 461 (476)
.|++......+....+..|.++|+.+.. ..+.+.+.++||++.|.+ |+++. .++++++
T Consensus 328 ~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------------~~~~~l~~~~~V~~~p~~----ri~~~~~~~~~i~ 386 (396)
T PRK09257 328 ALKAKGPSRDFDFIARQRGMFSYSGLTP-----------------EQVDRLREEFGVYAVGSG----RINVAGLNESNID 386 (396)
T ss_pred HHHhcCCCCCcccccccceEEEecCCCH-----------------HHHHHHHHcCCEEEcCCC----eEEEeeCCHHHHH
Confidence 6655421101222234456666765521 233344467799998753 77765 7999999
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
+++++|++++
T Consensus 387 ~~~~~i~~~~ 396 (396)
T PRK09257 387 YVAEAIAAVL 396 (396)
T ss_pred HHHHHHHhhC
Confidence 9999998753
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-23 Score=203.03 Aligned_cols=322 Identities=15% Similarity=0.106 Sum_probs=198.6
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
..++||..+. ++++ .++.+.+++.+.+.....| +.....+|.+.+++++. ++++|++++|+++++..+++.
T Consensus 22 ~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~--- 93 (360)
T PRK07392 22 DAILDFSASI--NPLG-PPESVIAAIQSALSALRHY--PDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE--- 93 (360)
T ss_pred ccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhhcC--CCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH---
Confidence 3678888664 5555 6789999988877653333 33224567777777765 678999999999999998883
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
+..++.|++.+++|.++. ..+...|..+...+.....+.. ....+++.+++.. . ..+++++...+|
T Consensus 94 l~~g~~vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~---~-~~~~~~l~nP~N 159 (360)
T PRK07392 94 LAQLRAVYLITPAFGDYR-RALRAFGATVKELPLPLDQPSP---------GLTLRLQTLPPQL---T-PNDGLLLNNPHN 159 (360)
T ss_pred hCCCCeEEEECCCcHHHH-HHHHHcCCeEEEEecccccCCc---------ccccCHHHHHHhc---c-CCCEEEEeCCCC
Confidence 445578999999998754 3344455544332221111110 0001455554432 2 345555544466
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i 331 (476)
++|.+.+ .++|.++++++++ +|+||+|.+| ..+.. ......+..+.++ +|||.++ +|+|+||+++++++
T Consensus 160 PTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~ 234 (360)
T PRK07392 160 PTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDR 234 (360)
T ss_pred CCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHH
Confidence 7888887 5678888999985 6669999988 54421 1111122223333 7999999 99999999999999
Q ss_pred HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec
Q 011856 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (476)
Q Consensus 332 ~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (476)
++.+... ...++.+.+++.++.++|+.-.- +...+.++++.+++.+.|++ ++.....++.|.++++.+..
T Consensus 235 ~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~~~fl~~~~~~ 305 (360)
T PRK07392 235 LQRWQQW-----RDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS----LPGLTPLPSAANFLLVQSQG 305 (360)
T ss_pred HHHHHhh-----CCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCCEEEEEcCC
Confidence 8887631 12467788999988888752110 12223344444445554443 32222234567777766531
Q ss_pred CCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...++.+.++ ++||.+.++. .+++|+++.. .++.+++.+.|+++++
T Consensus 306 ---------------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 306 ---------------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT-EAENQRLLEALAAILA 358 (360)
T ss_pred ---------------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhh
Confidence 1246777754 6799998873 1357787665 3445666666666543
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=205.09 Aligned_cols=319 Identities=11% Similarity=0.102 Sum_probs=202.7
Q ss_pred eecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeC
Q 011856 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVN 162 (476)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~----~~e~v~~~~ 162 (476)
+++|.+.+...|+..+|+..|. +.++ .+|.+.+++.+.+.......|+.....+|.+.+++++. ++++|++++
T Consensus 7 ~~~~~~~~~~~~~~~i~l~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~ 83 (335)
T PRK14808 7 IAKRAYPYETEKRDRTYLALNE--NPFP-FPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGN 83 (335)
T ss_pred hhccCcCCCCCCCceeEecCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcC
Confidence 4566666667888999998874 4555 58889999988775432122333344566666666553 478999999
Q ss_pred CHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
|+++++..+++. + +.|++.+++|.++.. .....|..+...+. .... .++.. .+.
T Consensus 84 Ga~~~i~~~~~~---~---d~v~v~~P~y~~~~~-~~~~~g~~~~~v~~--~~~~--------------~~~~~--~~~- 137 (335)
T PRK14808 84 GADEIIYVMMLM---F---DRSVFFPPTYSCYRI-FAKAVGAKFLEVPL--TKDL--------------RIPEV--NVG- 137 (335)
T ss_pred CHHHHHHHHHHH---h---CcEEECCCCHHHHHH-HHHHcCCeEEEecC--CCcC--------------CCChh--Hcc-
Confidence 999999999983 3 568888888877443 33334443322211 1110 01111 122
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCch---hhhhhhcC-C
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL---TTLGKIIG-G 318 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi---~t~sK~lg-~ 318 (476)
..+++++...+|++|.+.+ .+++.+|+ +++++||+||+|..|...... ......+++ .+|||.++ +
T Consensus 138 ---~~~~i~i~nP~NPTG~~~s----~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~--~~~~~~~~vi~~~S~SK~~~l~ 207 (335)
T PRK14808 138 ---EGDVVFIPNPNNPTGHVFE----REEIERIL-KTGAFVALDEAYYEFHGESYV--DLLKKYENLAVIRTFSKAFSLA 207 (335)
T ss_pred ---CCCEEEEeCCCCCCCCCcC----HHHHHHHH-hcCCEEEEECchhhhcCCchH--HHHHhCCCEEEEEechhhccCc
Confidence 2355555555566788877 44555666 589999999999887211111 111112233 37999999 8
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
|+|+||+++++++++.+.... .+++.+.+++.++.++++..+. .+..+.++++.+.+.+.|++ .++ ...
T Consensus 208 GlRvG~~v~~~~~~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~-~~~ 277 (335)
T PRK14808 208 AQRIGYVVSSEKFIDAYNRVR-----LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE----MGY-RIT 277 (335)
T ss_pred ccceEEEEeCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----CCC-EEC
Confidence 999999999999999886321 2456678888888888763211 22233444444455555544 342 223
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
++.|.|+++.+... ...++.+.|.++||+++... ..+|+++. +.+++++++++|++.
T Consensus 278 ~~~g~f~~~~l~~~--------------~~~~~~~~l~~~Gi~V~~~~-~~~Risi~-~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 278 DSRGNFVFIFMEKE--------------EKERLLEHLRAKNIAVRSFR-EGVRITIG-KREENDMILKELEVF 334 (335)
T ss_pred CCCCeEEEEeCCCc--------------cHHHHHHHHHHCCeEEEECC-CCeEEecC-CHHHHHHHHHHHHhh
Confidence 46788888877421 12567889999999998753 56788754 678899999998753
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=203.74 Aligned_cols=314 Identities=14% Similarity=0.089 Sum_probs=199.1
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~a 171 (476)
..++||..+ ++....++.+.+++.+.... ..|. +..+++..+++++.+..+ .+++|++++|+++++..+
T Consensus 27 ~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~ 102 (364)
T PRK07865 27 DGIVDLSVG---TPVDPVPPVIQEALAAAADA-PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWL 102 (364)
T ss_pred CCEEEcCCC---CCCCCCCHHHHHHHHHHHhh-CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHH
Confidence 346777777 44443468888888765543 2232 224677788888876542 468999999999999887
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+.+. ....++.|++.+++|.+.... ....|.. +..+ +++++++. .++++|+
T Consensus 103 ~~~l-~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~-------------------~~~~--~~~~~l~~------~~~~~v~ 153 (364)
T PRK07865 103 PTLL-GLGPGDVVVIPELAYPTYEVG-ARLAGAT-------------------VVRA--DSLTELGP------QRPALIW 153 (364)
T ss_pred HHHH-cCCCCCEEEECCCCcccHHHH-HHhcCCE-------------------EEec--CChhhCCc------ccceEEE
Confidence 6632 134567788888888764332 2222321 1222 23333322 2567777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhc--cCCC-Cch---hhhhhhcC-CCCcE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY--FGVT-PDL---TTLGKIIG-GGLPV 322 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~--~g~~-pDi---~t~sK~lg-~G~~i 322 (476)
+++.+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+... .... .+.. ..+ .+|||.++ .|+|+
T Consensus 154 ~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 232 (364)
T PRK07865 154 LNSPSNPTGRVLGVDH-LRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRA 232 (364)
T ss_pred EcCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceee
Confidence 7766777888887655 999999999999999999999877 433211 1111 0111 122 27999997 79999
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
||+++++++++.+.. ......++.+++.+.++.++|+..+. ++.++.++++.+.+.+.|++ +++....+..|
T Consensus 233 G~i~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~ 305 (364)
T PRK07865 233 GFVAGDPALVAELLE---VRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA----AGFRVDHSEAG 305 (364)
T ss_pred EEEecCHHHHHHHHH---HHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCCCcc
Confidence 999999999888763 11223456678888887776642110 22333444444445554444 34322223345
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
.++++.+.. + ..++.+.|.++||++.|+. .+.+|+++..+++++++++++|+
T Consensus 306 ~~~~~~~~~------------~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 306 LYLWATRGE------------D---CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred EEEEEeCCC------------C---HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 566665521 1 1456778889999998853 23578888778999999999885
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-23 Score=209.06 Aligned_cols=332 Identities=13% Similarity=0.074 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHHhc---C-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhc-cCCceEE
Q 011856 117 DDQVLAALGETMKKG---T-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRERII 185 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~---~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~-~~~~~ii 185 (476)
+..+.+++.+.++.. . .|+ +..++++++++++.+..+ .+++|++|+|+++|+..+++.. . ..++.|+
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l--~~~~gD~Vl 167 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLL--IGDPSDGVM 167 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh--ccCCCCEEE
Confidence 457777777666542 1 122 234677778877776533 5789999999999999999842 2 3567788
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcc
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFI 262 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i 262 (476)
+.+++|.++.. .+...|..+..++.....++. -|+++|++.++.. ..+++++++...+|++|.+
T Consensus 168 v~~P~y~~y~~-~~~~~g~~~v~v~~~~~~~~~------------~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 168 IPIPQYPLYSA-AITLLGGKQVPYYLDEEKGWS------------LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV 234 (481)
T ss_pred ECCCCchhHHH-HHHHcCCEEEEEEeccccCCC------------CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence 88888887543 333444433322221111110 1789999988631 1246654444446678887
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-ccc-hh-hc-cCCCC------chh---hhhhhc-C-CCCcEEEEE
Q 011856 263 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQ-EY-FGVTP------DLT---TLGKII-G-GGLPVGAYG 326 (476)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~-~~-~~-~g~~p------Di~---t~sK~l-g-~G~~iG~~~ 326 (476)
.+.++ +++|.++|++||++||+||+|..+ ..+ ..+ .. .. .++.+ .++ +|||.+ + +|||+||++
T Consensus 235 ~s~e~-~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~ 313 (481)
T PTZ00377 235 LTRDV-MEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFE 313 (481)
T ss_pred CCHHH-HHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEE
Confidence 76555 999999999999999999999877 422 111 11 10 11211 233 699985 6 799999998
Q ss_pred e---cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----CCHHHH-------HHHHHHHHHHHHHHHhhhc
Q 011856 327 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEY-------LNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 327 ~---~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~-------~~~~~~~l~~~L~~~~~~~ 391 (476)
+ ++++++.+... . ...++.|.+++.++.++|+.... +.+.++ ++++.+.+.+.|++ +
T Consensus 314 ~~~~p~~li~~l~~~---~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~----~ 385 (481)
T PTZ00377 314 LTNIPPEVREQIYKL---A-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK----I 385 (481)
T ss_pred EeCCCHHHHHHHHHH---h-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 6 89998888632 1 12346788899998888852111 112222 33444444444443 3
Q ss_pred CCceEeee-eceeEEEEEecCC-CcCchhhcccchHHHHHH-HHHHHHCCeEeccCC-------CcceEEeCCCcHHHHH
Q 011856 392 GHAICGGY-ISGMFGFFFTEGP-VYNFEDAKKSETTKFARF-YRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 392 ~~~~~v~~-~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~Gv~~~~~~-------~~~~~~~~~~t~e~i~ 461 (476)
+....... .|.++++.+..+. .... ....... ....+ ...|.++||.+.|+. .+++|+++..++++++
T Consensus 386 ~g~~~~~p~gg~fl~~~~~l~~~~~~~-~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~ 463 (481)
T PTZ00377 386 EGVSCQPVEGAMYAFPRIELPEKAIQE-AKERGLA-PDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIE 463 (481)
T ss_pred CCcEeecCCeeEEEEeeccCchhhHHH-HHhcCCC-cHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHH
Confidence 22222333 4556665543110 0000 0000000 01233 355567899998863 1258888888889999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|.+++++.
T Consensus 464 ~~l~rl~~~~~~~ 476 (481)
T PTZ00377 464 EMVKKIKEFHESF 476 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=218.29 Aligned_cols=352 Identities=11% Similarity=0.057 Sum_probs=216.2
Q ss_pred EEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC---CeEEEeCCHHHHH
Q 011856 93 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI---EMVRFVNSGTEAC 168 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~---e~v~~~~sGseA~ 168 (476)
+.+.+|..+|++..|. +.++ .+|.+.+++.+.+.+........++..++++++++.++ .. ++|++++|+++++
T Consensus 691 ~~~~~g~~vI~LsinE--~d~p-pPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 691 VSGSQESSLIHMDVDE--SFLP-VPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF 767 (1082)
T ss_pred CcccCCCCEEEEeCCC--CCCC-CCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence 4555678899998884 4444 78999999998876643322345678899999998865 22 4899999999888
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..+++. ...+++.|++..++|..+. ......|..+..++.....++. -|++.|++.+++. ....
T Consensus 768 ~lll~a--Ll~pGD~VLVp~PtY~~Y~-~~a~~~Ga~vv~Vpl~~e~gf~------------lD~d~Le~al~~~-~~~~ 831 (1082)
T PLN02672 768 NKLVLC--CVQEGGTLCFPAGSNGTYV-SAAKFLKANFRRIPTKSSDGFK------------LTAKTLASTLETV-KKPW 831 (1082)
T ss_pred HHHHHH--HcCCCCEEEEeCCChHHHH-HHHHHcCCEEEEEecccccCCC------------CCHHHHHHHhccC-CCCE
Confidence 888873 1234577888888887643 4444455544433221111210 1788999998642 1346
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc---hh----hccC-CCC--chh---hhhh
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---AQ----EYFG-VTP--DLT---TLGK 314 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---~~----~~~g-~~p--Di~---t~sK 314 (476)
+++++|++|++|.+.+.++ +++|.++|++||++||+||+|.++ ..+... .. ..++ ..+ .++ +|||
T Consensus 832 I~L~nPnhNPTG~v~S~ee-Le~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK 910 (1082)
T PLN02672 832 VYISGPTINPTGLLYSNSE-IEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST 910 (1082)
T ss_pred EEEECcCCCCcCccCCHHH-HHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence 7778887677888776555 999999999999999999999887 543211 00 0111 112 222 7999
Q ss_pred hcC-CCCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHH
Q 011856 315 IIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-------YEYLNKITGELTQGII 385 (476)
Q Consensus 315 ~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~-------~~~~~~~~~~l~~~L~ 385 (476)
.++ +|||+||++++ +++++.+..... ....+..+..++++++++++. +..++ ++.++++.+++.+.|+
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~~~--~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L~e~L~ 987 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSAPG--LSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERLKETLE 987 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHhhh--hcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 79999999986 458888763111 111122233343333333310 11222 3334455555555554
Q ss_pred HHhhhcCCceEeeee-ceeEEEEEecCCCcCchhhcccc-----hHHHHHHHHHHHHC-CeEeccCCC----cceEEeCC
Q 011856 386 DAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSE-----TTKFARFYRGMLEE-GVYFAPSQF----EAGFTSLA 454 (476)
Q Consensus 386 ~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~~~~~ 454 (476)
+ +++. ..++. |.++|+.+...... ......++ .....++++.|+++ ||.+.|+.. +.+|++++
T Consensus 988 ~----~Gi~-v~~PeGGFfLwl~l~~~l~~-~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa 1061 (1082)
T PLN02672 988 A----CGWD-VLEPQGGISMVAKPSAYLGK-TVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA 1061 (1082)
T ss_pred H----CCCe-EecCCcEEEEEEEccccccc-cccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec
Confidence 4 3433 23444 44555544210000 00000000 01235788888865 999998742 46789999
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~ 473 (476)
.+++++++++++|+++.+-
T Consensus 1062 ~~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672 1062 LEDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999987653
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=203.20 Aligned_cols=302 Identities=18% Similarity=0.154 Sum_probs=195.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.+.+||..|+ +.++. | ..+... ... ..|++....++.+.++++++ .++++++++|+++++..+.+ .
T Consensus 17 ~~~~~~~~~~--~~~~~--~-~~~~~~---~~~--~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~---~ 83 (330)
T TIGR01140 17 EDWLDFSTGI--NPLGP--P-VPPIPA---SAW--ARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPR---L 83 (330)
T ss_pred hheeEccccC--CCCCC--C-hhhcch---HHH--hhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHH---H
Confidence 3468888876 44443 3 222111 111 12333334788888888876 46899999999999988665 3
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
+.++ +|++.+++|+.+... +...|. ++..++ |++.+++.+++ ..+++++.| +|
T Consensus 84 l~~g-~vl~~~p~y~~~~~~-~~~~g~-------------------~~~~~~--d~~~l~~~~~~---~~~v~i~~p-~N 136 (330)
T TIGR01140 84 LAPG-RVLVLAPTYSEYARA-WRAAGH-------------------EVVELP--DLDRLPAALEE---LDVLVLCNP-NN 136 (330)
T ss_pred hCCC-eEEEeCCCcHHHHHH-HHHcCC-------------------EEEEeC--CHHHHHhhccc---CCEEEEeCC-CC
Confidence 3444 788888888775332 222222 234444 88999888842 224445555 56
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
++|.+.+. +.+++|.++|++||+++|+||+|.+| ..... ....+..++++ +|||.+| +|+|+||++++++++
T Consensus 137 PtG~~~~~-~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~ 213 (330)
T TIGR01140 137 PTGRLIPP-ETLLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALL 213 (330)
T ss_pred CCCCCCCH-HHHHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHH
Confidence 67777654 44999999999999999999999887 32111 11112123333 7999999 899999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
+.+... ...++.++++++++.+.++ ++++.++.+++.+..++.+.+...+++.....++.|.|+++.+.+
T Consensus 214 ~~l~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~-- 283 (330)
T TIGR01140 214 ARLREA-----LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTPD-- 283 (330)
T ss_pred HHHHhc-----CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCC--
Confidence 888742 2345667888887777765 334444444444445555544444444333334567777776531
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
..++.+.|+++||++.++.. +.+|+++....++ ++++.+|+
T Consensus 284 --------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l~ 330 (330)
T TIGR01140 284 --------------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEALA 330 (330)
T ss_pred --------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhhC
Confidence 15788999999999998742 3578888776666 88877763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=207.48 Aligned_cols=327 Identities=17% Similarity=0.197 Sum_probs=203.0
Q ss_pred EEEecccChhhccCCC-CcHHHHHHHHHHHH----hcCCCCC-CCHHHHHHHHHHHhhCC-------CCC-eEEEeCCHH
Q 011856 100 EYIDYVGSWGPAIIGH-ADDQVLAALGETMK----KGTSFGA-PCLLENVLAEMVISAVP-------SIE-MVRFVNSGT 165 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~----~~~~~~~-~~~~~~~la~~l~~~~~-------~~e-~v~~~~sGs 165 (476)
++|||.+| ++.+. +++.+.+++.+..+ ......| +.....+|.+.+++++. +.+ .+++++|..
T Consensus 2 ~~I~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~ 78 (363)
T PF00155_consen 2 DVINLGSN---APLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQ 78 (363)
T ss_dssp TEEESSSS---STSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHH
T ss_pred CEEEEECC---CCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccc
Confidence 47888888 44443 56655555554433 2222333 33335555555555542 467 777777666
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK- 244 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~- 244 (476)
+++..++.+.+ ..+++.|++.+++|.+. ...+...|..+...++....+ -+.|+++|++.+++.+
T Consensus 79 ~~~~~~~~~~~-~~~~~~vlv~~P~y~~~-~~~~~~~g~~~~~~~~~~~~~------------~~~d~~~l~~~l~~~~~ 144 (363)
T PF00155_consen 79 AALFLLLRLLK-INPGDTVLVPDPCYPSY-IEAARLLGAEVIPVPLDSEND------------FHLDPEALEEALDELPS 144 (363)
T ss_dssp HHHHHHHHHHH-SSTTSEEEEEESSSTHH-HHHHHHTTSEEEEEEEEETTT------------TEETHHHHHHHHHTSHT
T ss_pred cchhhhhhccc-ccccccceecCCccccc-cccccccCceeeecccccccc------------ccccccccccccccccc
Confidence 66666665421 44667788888888764 344444444322211100000 0338999999998642
Q ss_pred C--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc-c-cch-hhccCCCCchh---hhhhhc
Q 011856 245 G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-Y-GGA-QEYFGVTPDLT---TLGKII 316 (476)
Q Consensus 245 ~--~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g-~-~~~-~~~~g~~pDi~---t~sK~l 316 (476)
+ ++.+|+++.+++++|...+.++ +++|.++|++||+++|+||+|.++..+ . ... .....-.++++ +|||.+
T Consensus 145 ~~~~~~~v~~~~p~nPtG~~~~~~~-l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 223 (363)
T PF00155_consen 145 KGPRPKAVLICNPNNPTGSVLSLEE-LRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF 223 (363)
T ss_dssp TTETEEEEEEESSBTTTTBB--HHH-HHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT
T ss_pred cccccceeeeccccccccccccccc-ccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc
Confidence 1 2467777766778888776555 999999999999999999999887332 2 111 22223334432 799999
Q ss_pred C-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 317 G-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 317 g-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
| .|+|+||+++++++++.++. ... .+..+.+.+.++.+.+..... ++..++++++.+++.+.|++.
T Consensus 224 g~~GlRvG~i~~~~~~~~~l~~---~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 295 (363)
T PF00155_consen 224 GLPGLRVGYIVAPPELIERLRR---FQR--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI--- 295 (363)
T ss_dssp TSGGGTEEEEEEEHHHHHHHHH---HHH--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cccccccccccchhhhhhhhhh---ccc--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh---
Confidence 9 79999999999999998873 222 223366777776666654331 334455555555555555543
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCCC----cceEEeC-CCcHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSL-AHSSDDIQHTI 464 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~~~~-~~t~e~i~~~~ 464 (476)
++.......|.++++.+.. ....++.+.|+++ ||.+.|+.. ..+|+++ .++++++++++
T Consensus 296 -~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~ 360 (363)
T PF00155_consen 296 -GITVLPPEAGFFLWVRLDP--------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEAL 360 (363)
T ss_dssp -TSEEEHHSBSSEEEEEESH--------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHH
T ss_pred -hhheeeccCccEEEEEccc--------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHH
Confidence 4443333456666665532 1346788899988 999998642 3578888 88999999999
Q ss_pred HHH
Q 011856 465 TAA 467 (476)
Q Consensus 465 ~~l 467 (476)
++|
T Consensus 361 ~~l 363 (363)
T PF00155_consen 361 ERL 363 (363)
T ss_dssp HHH
T ss_pred hhC
Confidence 986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=202.60 Aligned_cols=332 Identities=15% Similarity=0.160 Sum_probs=205.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhC-C-CCCeEEEeCCHHHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~-~-~~e~v~~~~sGseA~~~al~~ 174 (476)
.++||..+. ..++ .++.+.+++.+.......|+ +..+++.++++.+...- + +.++|++++|+++|+..+++.
T Consensus 31 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 107 (397)
T PRK07568 31 KVYHLNIGQ--PDIK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMA 107 (397)
T ss_pred CEEEecCCC--CCCC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHH
Confidence 456666663 2223 36788888876654322232 12355566666654221 2 578999999999999999884
Q ss_pred HHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
. ...++.|++.+++|... .......|..+..++.....+. ...++++|++.++. ++++|++..
T Consensus 108 l--~~~gd~Vl~~~p~y~~~-~~~~~~~g~~~~~v~~~~~~g~-----------~~~~~~~l~~~~~~---~~~~v~i~~ 170 (397)
T PRK07568 108 I--CDPGDEILVPEPFYANY-NGFATSAGVKIVPVTTKIEEGF-----------HLPSKEEIEKLITP---KTKAILISN 170 (397)
T ss_pred h--cCCCCEEEEecCCCccH-HHHHHHcCCEEEEeecCcccCC-----------CCCCHHHHHHhcCc---cceEEEEEC
Confidence 2 34567788888877653 3333444443332221101111 01257888888863 455665544
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc--chhhccCCCCchh---hhhhhcC-CCCcEEEEEe
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~ 327 (476)
.++++|.+.+.++ +++|.++|+++|+++|+||+|.+| ..+.. ......+..++++ +|||.++ .|+|+||+++
T Consensus 171 p~NPtG~~~~~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~ 249 (397)
T PRK07568 171 PGNPTGVVYTKEE-LEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLIS 249 (397)
T ss_pred CCCCCCccCCHHH-HHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEec
Confidence 4566787776555 999999999999999999999988 54421 1111112223333 7999999 6999999988
Q ss_pred c-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeecee
Q 011856 328 R-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGM 403 (476)
Q Consensus 328 ~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~ 403 (476)
+ +++++.+... .. .+++.+.+.+.++.++|+..+. +++.+.++++.+.+.+.|++ ++..... +..|.+
T Consensus 250 ~~~~~~~~~~~~---~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~g~~~ 321 (397)
T PRK07568 250 KNKELIAAAMKL---CQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK----IPGVVCEKPKGAFY 321 (397)
T ss_pred CCHHHHHHHHHH---hh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecCCCcceE
Confidence 4 6787766421 11 2456778888888777753211 23344455555555555544 2222222 334455
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHH------CCeEeccCC---------CcceEEeCCCcHHHHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE------EGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~~~~~~---------~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
+++.+... ...++.+.|++ +||.+.|+. .+.+|+++..+++++++++++|+
T Consensus 322 ~~~~l~~~--------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~ 387 (397)
T PRK07568 322 IIAKLPVD--------------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILK 387 (397)
T ss_pred EEEecCCC--------------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Confidence 67776321 12456667765 599998852 13678888888999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+++++.
T Consensus 388 ~~l~~~ 393 (397)
T PRK07568 388 EALEKY 393 (397)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=202.91 Aligned_cols=310 Identities=15% Similarity=0.142 Sum_probs=198.1
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
.|..++||..|. ++++ .+|.+.+++.+.+.......|+.....+|.+.+++++. ++++|++++|+++++..+++.
T Consensus 16 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~- 91 (337)
T PRK03967 16 EGNYRIWLDKNE--NPFD-LPEELKEEIFEELKRVPFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL- 91 (337)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHhhcCccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH-
Confidence 345668888774 4454 56889999988876422233455445677777777775 678999999999999887773
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
+ .++.|++.+++|..+. ......|..+...+.....+ -|++++++.+. +++++++...
T Consensus 92 --~-~gd~V~v~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~----~~~~v~~~~P 149 (337)
T PRK03967 92 --F-EGKHIVITPPTFGMYS-FYAKLNGIPVIDVPLKEDFT--------------IDGERIAEKAK----NASAVFICSP 149 (337)
T ss_pred --h-CCCeEEEeCCChHHHH-HHHHHcCCeEEEeecCCCCC--------------cCHHHHHHhcc----CCCEEEEeCC
Confidence 3 4678999998886432 23334444333222111011 16788877653 3344444444
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i 331 (476)
+|++|.+.+ .++|.++++ +++++|+||+|.+|...... ...+..++++ +|||.++ +|+|+||+++++++
T Consensus 150 ~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~~~~~--~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~ 222 (337)
T PRK03967 150 NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSGKSLI--GLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEI 222 (337)
T ss_pred CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcccchH--HHHhhCCCEEEEecchHhhcchhhhheeeecCHHH
Confidence 667888887 566777774 79999999999887211111 1112223433 7999999 89999999999999
Q ss_pred HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec
Q 011856 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (476)
Q Consensus 332 ~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (476)
++.+.... ..++.+.+++.++.++|+..+. .+..+++.+..+.+.+.|.+ .. .++.|.++++.+
T Consensus 223 i~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~----~~~~~~~~~~~~-- 287 (337)
T PRK03967 223 IDALYRIK-----PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE----YA----YPSDANFLLLKL-- 287 (337)
T ss_pred HHHHHhhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc----Cc----CCCCCcEEEEhH--
Confidence 98887421 2456678888888887752211 12222333333333333332 21 235566766543
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.+.|+++||.+++.. .+.+|+++. +.++.++++++|+++.+.
T Consensus 288 ------------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~-~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 288 ------------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG-KREENDEFIKALKEIKEG 334 (337)
T ss_pred ------------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 25688889999997642 245788766 568888999999887653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=201.34 Aligned_cols=314 Identities=15% Similarity=0.100 Sum_probs=201.0
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~ 170 (476)
+..++||.++ ++....++.+.+++.+.... ..|. +..+++.++++++.+.++ .+++|++++|+++++..
T Consensus 20 ~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~ 95 (357)
T TIGR03539 20 PDGIVDLSVG---TPVDPVPPLIRAALAAAADA-PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW 95 (357)
T ss_pred CCCeEEccCC---CCCCCCCHHHHHHHHHHHhh-CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence 4467888887 44444578888888776543 1222 234777888888876632 46899999999999998
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
++++. ....++.|++.+++|.+.... +...|.. ++.+ ++++.++ . +++++|
T Consensus 96 ~~~~l-~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~-------------------~~~v--~~~~~l~----~--~~~~~v 146 (357)
T TIGR03539 96 LPTLL-GLGPGDTVVIPELAYPTYEVG-ALLAGAT-------------------PVAA--DDPTELD----P--VGPDLI 146 (357)
T ss_pred HHHHH-cCCCCCEEEECCCCcHHHHHH-HHhcCCE-------------------Eecc--CChhhcC----c--cCccEE
Confidence 87742 134567888888888765432 2222321 1111 2333332 1 256777
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhc--cCC-CCc-hh--hhhhhcC-CCCc
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY--FGV-TPD-LT--TLGKIIG-GGLP 321 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~--~g~-~pD-i~--t~sK~lg-~G~~ 321 (476)
+++..+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+.... ... .+. ... ++ +|||.++ +|+|
T Consensus 147 ~~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R 225 (357)
T TIGR03539 147 WLNSPGNPTGRVLSVDE-LRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR 225 (357)
T ss_pred EEeCCCCCcCccCCHHH-HHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCcee
Confidence 77777777888877655 999999999999999999999877 3332111 110 010 112 22 7999997 8999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+||+++++++++.+.. ......++.+.+++.++.++|+.-.. ....++++++.+++.+.|++ .++....+..
T Consensus 226 ~G~~i~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~----~g~~~~~p~~ 298 (357)
T TIGR03539 226 AGFVAGDPALVAELLT---VRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK----AGFRIDHSEA 298 (357)
T ss_pred EEEEecCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCcCCCc
Confidence 9999999999887753 22223456788888887777642110 22334444555555555544 3322222334
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAA 467 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l 467 (476)
|.++++.+.. ...++.+.|.++||.+.|+. .+.+|+++..+++++++++++|
T Consensus 299 ~~~~~~~~~~---------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 299 GLYLWATRGE---------------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred cEEEEEECCC---------------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 5556665421 12467788889999998864 2457888888899999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=203.79 Aligned_cols=342 Identities=13% Similarity=0.073 Sum_probs=206.4
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhC--C-CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAV--P-SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~--~-~~e~v~~~~sGseA~~ 169 (476)
.|..++||..|.. +.+++ .++.+.+++.+.+.....|+.+ .++++++++.+.... + .+++|++++|+++++.
T Consensus 31 ~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~ 109 (404)
T PRK09265 31 EGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV 109 (404)
T ss_pred cCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence 4456677777622 34455 4788999888776543333221 244555555554322 2 5789999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ..+++.|++.+++|..+...+ ...|..+.........+. .-|++++++.+.. ++++
T Consensus 110 ~~~~~~--~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 171 (404)
T PRK09265 110 MAMQAL--LNNGDEVLVPAPDYPLWTAAV-SLSGGKPVHYLCDEEAGW------------FPDLDDIRSKITP---RTKA 171 (404)
T ss_pred HHHHHh--CCCCCEEEEeCCCCcChHHHH-HHcCCEEEEEecccccCC------------CCCHHHHHHhccc---cceE
Confidence 998842 345677888888887644333 333332222111100010 0178889888753 4555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc--h---hhhhhhcC-CCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--L---TTLGKIIG-GGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD--i---~t~sK~lg-~G~~i 322 (476)
|++...+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.... ......++ + -+|||.++ +|+|+
T Consensus 172 v~l~~P~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~S~SK~~~~pGlRi 249 (404)
T PRK09265 172 IVIINPNNPTGAVYSKEL-LEEIVEIARQHNLIIFADEIYDKILYDGAVHI-SIASLAPDLLCVTFNGLSKAYRVAGFRV 249 (404)
T ss_pred EEEECCCCCCCcCCCHHH-HHHHHHHHHHCCCEEEEehhhhhccCCCCCcC-CHHHcCCCceEEEEecchhhccCcccce
Confidence 554444667888776555 999999999999999999999887 4332110 11111222 2 36999996 79999
Q ss_pred EEEEe--cHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHH---HHHHHHHHHHHHHHHHHhhhcC
Q 011856 323 GAYGG--RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTY---EYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 323 G~~~~--~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~---~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
||+++ +++ +++.+.. ....+++.|.+++.++.++|...+. .++. +++.++.+.+.+.|+++. +
T Consensus 250 G~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~---~ 322 (404)
T PRK09265 250 GWMVLSGPKKHAKGYIEGLDM----LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIP---G 322 (404)
T ss_pred EEEEEeCchHHHHHHHHHHHH----HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC---C
Confidence 99985 444 3333321 1122456678888888888742111 1121 234444444544444320 2
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 466 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~ 466 (476)
+....+..|.++++.+..... +.......+.+.+.++||.+.|+. ...+|+++..+++++++++++
T Consensus 323 ~~~~~p~~g~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~r 394 (404)
T PRK09265 323 VSCVKPKGALYAFPKLDPKVY--------PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGR 394 (404)
T ss_pred CcccCCCcceEEEEEeccccc--------CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHH
Confidence 222234457778877743110 000112346677889999998863 235788888899999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|+++++..
T Consensus 395 l~~~l~~~ 402 (404)
T PRK09265 395 IGRFLSGY 402 (404)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=207.77 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHHHHHHHHHHhc-cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 138 CLLENVLAEMVISAVP---SIEMVRF--VNSGTEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~e~v~~--~~sGseA~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
.++++++++++.+... .+++|++ +++|++|+..++.+.+.+ ..++.|++.+++|+++.. .+...|..+..++.
T Consensus 75 ~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~-~~~~~G~~~~~v~l 153 (404)
T PTZ00376 75 QSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN-IFKSAGLNVKEYRY 153 (404)
T ss_pred HHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH-HHHHcCCceeeccc
Confidence 4666677776654431 4678884 889999999988765444 456788888999988544 44555554443322
Q ss_pred -C-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 212 -P-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 212 -~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
+ ...++ |++.+++.+++..++.+++++...+|++|.+.+.++ +++|.++|++||++||+||+|
T Consensus 154 ~~~~~~~~--------------d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y 218 (404)
T PTZ00376 154 YDPKTKGL--------------DFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQ-WKEIADVMKRKNLIPFFDMAY 218 (404)
T ss_pred cCcccCCc--------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEehhh
Confidence 1 11121 789999998754334566666666777888876555 999999999999999999999
Q ss_pred cCc-cccc---cchhhcc-CCCCch---hhhhhhcC-CCCcEEEE---EecHHHHHhhcCCCCccccCCC-CCcHHHHHH
Q 011856 290 TGF-RLAY---GGAQEYF-GVTPDL---TTLGKIIG-GGLPVGAY---GGRRDIMEMVAPAGPMYQAGTL-SGNPLAMTA 356 (476)
Q Consensus 290 ~g~-r~g~---~~~~~~~-g~~pDi---~t~sK~lg-~G~~iG~~---~~~~~i~~~l~~~~~~~~~~t~-~~~~~~~aa 356 (476)
.+| ..+. ......+ ...+++ .+|||.++ +|||+||+ ++++++++.+...-......++ +.+++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~ 298 (404)
T PTZ00376 219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARI 298 (404)
T ss_pred cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Confidence 888 4321 1011111 111233 37999999 89999998 5788765543210000111223 346678888
Q ss_pred HHHHHHHhc---C-----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 357 GIHTLKRLK---E-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 357 a~aal~~~~---~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
+.++|+.-. + .+.+++++++.+.+.+.|++......+....+..|.++|+.+. .
T Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~------------------~ 360 (404)
T PTZ00376 299 ADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT------------------K 360 (404)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC------------------H
Confidence 877774211 0 1223455566666666666542111111112334555555441 3
Q ss_pred HHHHHHHHC-CeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 429 RFYRGMLEE-GVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 429 ~~~~~l~~~-Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
++++.|+++ ||++.|++ |+++. .+.++++.++++|++++..
T Consensus 361 ~~~~~L~~~~~v~v~p~~----Ris~~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 361 EQVERLIEKYHIYLLDNG----RISVAGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred HHHHHHHHhCCEeecCCC----eEEEeccCHHhHHHHHHHHHHHHhc
Confidence 667778866 99999874 77775 8999999999999998753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=203.69 Aligned_cols=344 Identities=14% Similarity=0.066 Sum_probs=208.9
Q ss_pred CCCEEEecccChhhc-cCCCCcHHHHHHHHHHHHhcCCCCC-CC----HHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGTSFGA-PC----LLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~l~~~~~~~~-~~----~~~~~la~~l~~~~~---~~e~v~~~~sGseA 167 (476)
.|..++|+..+.... +.-..++.+.+++.+.+.......| +. +++.++++.+....+ ..+++++++|+++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 356778888774310 1112578999999988865322222 22 445555555544322 45789999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++.. ...++.|++.+++|..+.. .....|..+...+.....+. --|++++++.+.. ++
T Consensus 109 l~~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~ 170 (403)
T TIGR01265 109 IEICIEAL--ANPGANILVPRPGFPLYDT-RAAFSGLEVRLYDLLPEKDW------------EIDLDGLEALADE---KT 170 (403)
T ss_pred HHHHHHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEecCCcccCC------------ccCHHHHHHHhCc---Cc
Confidence 99999953 2456778888887765432 33333443322211111010 0178999888763 35
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchh---hhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~---t~sK~lg-~G~~ 321 (476)
+++++...++++|.+.+.++ +++|.++|+++|+++|+||+|.+| ..+..+ ....+.-.++++ +|||.++ +|+|
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDH-LQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWR 249 (403)
T ss_pred cEEEEecCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcce
Confidence 55555544666787766555 999999999999999999999988 444221 111111112233 7999977 7999
Q ss_pred EEEEEec--HH-----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 322 VGAYGGR--RD-----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 322 iG~~~~~--~~-----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+||++++ ++ +++.+.. . ...+++.+.+++.++.++|+... . .+.+++++++.+.+.+.|+.. .
T Consensus 250 iG~~v~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 322 (403)
T TIGR01265 250 LGWIIIHDPHGIFRDTVLQGLKN---L-LQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDI---P 322 (403)
T ss_pred EEEEEEeCchhhhHHHHHHHHHH---H-hhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 9999873 22 3333321 1 11234668888888888886311 1 233444445555555555432 1
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC----CcceEEeCCCcHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITA 466 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~ 466 (476)
++....+..|.++++.+...... +.....++...+ .++||.+.|+. .+.+|+++...++.+++++++
T Consensus 323 ~~~~~~p~~g~f~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~ 394 (403)
T TIGR01265 323 GLVCPKPEGAMYLMVKLELELFP--------EIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSR 394 (403)
T ss_pred CceecCCCceeEEEEeccccccC--------CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHH
Confidence 22222355688888887532100 000124666665 47899999874 246788888889999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|.+++++.
T Consensus 395 l~~~~~~~ 402 (403)
T TIGR01265 395 IKEFCERH 402 (403)
T ss_pred HHHHHHhc
Confidence 99988653
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=202.81 Aligned_cols=333 Identities=12% Similarity=0.095 Sum_probs=209.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al 172 (476)
.++||..+. ..++ .++.+.+++.+.+... ..|. +..+++..+++++.+.++ .++++++++|+++|+..++
T Consensus 31 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~ 107 (388)
T PRK07337 31 DIIHMGIGE--PDFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLAC 107 (388)
T ss_pred CEEEeCCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHH
Confidence 356666663 1222 4688999998887643 2232 134666777777765543 5689999999999999888
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
... ...++.|++.+++|.+.... ....|..+...+.....+. . -|++++++.+.. ++++|++
T Consensus 108 ~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~---------~---~~~~~l~~~~~~---~~~~v~l 169 (388)
T PRK07337 108 LAL--VERGDEVLMPDPSYPCNRHF-VAAAEGRPVLVPSGPAERF---------Q---LTAADVEAAWGE---RTRGVLL 169 (388)
T ss_pred HHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEeecCCccCC---------c---CCHHHHHhhcCc---cceEEEE
Confidence 842 34567888888888875433 3333433322221100000 0 168889888763 4455555
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEe
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~ 327 (476)
...+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+... ......++++ +|||.++ +|+|+||+++
T Consensus 170 ~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~ 246 (388)
T PRK07337 170 ASPSNPTGTSIAPDE-LRRIVEAVRARGGFTIVDEIYQGLSYDAAPV--SALSLGDDVITINSFSKYFNMTGWRLGWLVV 246 (388)
T ss_pred ECCCCCCCcCcCHHH-HHHHHHHHHHCCCEEEEeccccccccCCCCc--ChhhccCCEEEEEechhhcCCchhheeeeec
Confidence 444566787776555 999999999999999999999877 433211 1112234543 7999998 8999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eeeeecee
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGM 403 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~ 403 (476)
++++++.+.. .......+.+.+++.++.++++.- .. .+..++++++.+++.+.|++. +... ..+..|.+
T Consensus 247 ~~~l~~~l~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~~~~~~~p~~g~f 319 (388)
T PRK07337 247 PEALVGTFEK---LAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL----GFKVPVMPDGAFY 319 (388)
T ss_pred CHHHHHHHHH---HHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCeeEE
Confidence 9999887763 212223456778888877776411 00 223344445555555555443 3222 13456788
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
+++.+..... ++.....+++..+ .++||.+.|+. .+++|+++..+++++++++++|.+++
T Consensus 320 ~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 320 VYADCRGVAH--------PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred EEEecccccC--------CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 8888753100 0111124666664 57899998752 24678888888999999999998765
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=202.48 Aligned_cols=322 Identities=15% Similarity=0.138 Sum_probs=204.8
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
+..++||..|. ++++ .++.+.+++.+.......| +.....+|.+.++++++ ..++|++++|+++++..+++..
T Consensus 35 ~~~~i~l~~~~--~~~~-~~~~~~~al~~~~~~~~~Y--~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~- 108 (371)
T PRK05166 35 VPRIAKLGSNE--NPLG-PSPAVRRAFADIAELLRLY--PDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAV- 108 (371)
T ss_pred CcceEEcCCCC--CCCC-CCHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-
Confidence 44689998875 4555 6788999988755443333 33222478888888775 5789999999999999888742
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
...++.|++.+++|.... ......|..+...+.....++ |++++++.+++ ++++|++...+
T Consensus 109 -~~~gd~vli~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~~---~~~~v~l~~p~ 169 (371)
T PRK05166 109 -LRPGDRVVTLYPSFPLHE-DYPTMMGARVERVTVTPDLGF--------------DLDALCAAVAR---APRMLMFSNPS 169 (371)
T ss_pred -cCCCCEEEEcCCChHHHH-HHHHHcCCeEEEeecCCCCCC--------------CHHHHHHhhhc---CCCEEEEeCCC
Confidence 345677888888886543 233334443322211111111 78999988864 34555555556
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc-CCCCchh---hhhhhcC-CCCcEEEEEe-c
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-GVTPDLT---TLGKIIG-GGLPVGAYGG-R 328 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~-g~~pDi~---t~sK~lg-~G~~iG~~~~-~ 328 (476)
|++|.+.+.++ +++|.++|++ ++++|+||+|..| ..+.. ...... ...++++ +|||.++ +|+|+||+++ +
T Consensus 170 NPtG~~~~~~~-~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~ 247 (371)
T PRK05166 170 NPVGSWLTADQ-LARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD 247 (371)
T ss_pred CCCCCCCCHHH-HHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC
Confidence 66888877544 7777777764 8899999999877 32211 111111 1122333 7999999 8999999765 7
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
+++++.+... ...++.|.+++.++.+++..-.. ++..+.++++.+++.+.|++. ++. ..+..|.++++.
T Consensus 248 ~~l~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~-~~p~~g~fl~~~ 317 (371)
T PRK05166 248 PELVGLLDRV-----RTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM----GYR-IAPSRANFLFFD 317 (371)
T ss_pred HHHHHHHHHh-----ccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----cCe-eCCCcCCEEEEe
Confidence 8888877531 12456788888888777742111 233344445555555555543 332 235567787776
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+.. + ..++.+.|+++||.+.++. .+.+|+++. +.++.+++++.|++++.
T Consensus 318 ~~~------------~---~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~-~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 318 ARR------------P---ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG-SPEENDHFVAALDKVLE 370 (371)
T ss_pred CCC------------C---HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 421 1 2568889999999998863 235788777 56678888888877643
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=204.19 Aligned_cols=337 Identities=16% Similarity=0.128 Sum_probs=199.0
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEEeCCHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-P----CLLENVLAEMVISAVP---SIEMVRFVNSGT 165 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~~~sGs 165 (476)
+..++|+..+. ..++ .+|.+.+++.+.+.+. ...+| + .+++.++++++.+..+ .+++|++|+|+.
T Consensus 33 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGD--VTQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcC--CCCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 44567877773 2333 5788999998887652 11222 2 3466666666554432 578999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
+++...+. .+.+++.|++.+++|.+....+. ..|.. +.. + .+. ..+++.+|.+.-+.++.-+.+
T Consensus 110 ~al~~l~~---~~~~gd~V~v~~P~Y~~~~~~~~-~~g~~~~~~---~--~~~----~~~~~~v~~~~~~~~~~d~~~-- 174 (409)
T PRK07590 110 CDTGNILD---IFGPDNTIAVTDPVYPVYVDTNV-MAGRTGEAN---E--DGR----YSGIVYLPCTAENNFVPELPE-- 174 (409)
T ss_pred HHHHHHHH---hcCCCCEEEEeCCCCcchHHHHH-HcCCccccc---c--ccc----ccceeEeecccccCCcccCcc--
Confidence 99987544 45567889999999988654333 33321 100 0 000 001222222100001000111
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCc----hhhhhhhcC-
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD----LTTLGKIIG- 317 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pD----i~t~sK~lg- 317 (476)
.++++|++...+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.. -....+.-..+ +-||||.++
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 253 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQ-LKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHH-HHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence 24566655444667888776555 999999999999999999999888 43321 11111111112 237999998
Q ss_pred CCCcEEEEEecHHHHHhhcCCC--------CccccCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAG--------PMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~--------~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (476)
+|+|+||+++++++++.+.... ......++ +.+.+++.++.++++.-.. +++.+.++++.+.+.+.|+
T Consensus 254 pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~ 333 (409)
T PRK07590 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLE 333 (409)
T ss_pred cCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887321000 00011122 4577888887777642100 2234444455555555555
Q ss_pred HHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHH
Q 011856 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSD 458 (476)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e 458 (476)
+ +++....+..|.++|+.+... . ...+++..++ ++||.+.|+. .+.+|+++..+++
T Consensus 334 ~----~~~~~~~~~g~~f~wi~~~~~-~------------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~ 396 (409)
T PRK07590 334 S----AGFEVYGGVNAPYIWVKTPDG-M------------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRE 396 (409)
T ss_pred h----cCCceecCCcceEEEEECCCC-C------------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHH
Confidence 4 332222223566888887431 0 1246677766 5699998863 2357888777899
Q ss_pred HHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKV 470 (476)
Q Consensus 459 ~i~~~~~~l~~~ 470 (476)
++++++++|.++
T Consensus 397 ~l~~~l~rl~~~ 408 (409)
T PRK07590 397 NVLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=204.07 Aligned_cols=306 Identities=14% Similarity=0.108 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 138 CLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
.+++.++++++.+.++ .+++|++++|+++++..++... ...++.|++.++.|.+....+....|..+..++..
T Consensus 89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l--~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~ 166 (468)
T PLN02450 89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL--AEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCS 166 (468)
T ss_pred HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHh--CCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecC
Confidence 4677788888876432 5789999999999999998831 24566788888888775443332344433322211
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
...++ . -|++++++.+++. ..++++|++...+|++|.+.+.++ +++|.++|++||++||+||+|
T Consensus 167 ~~~~~-----------~-~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~-l~~ll~~a~~~~~~iI~DE~Y 233 (468)
T PLN02450 167 SSNGF-----------Q-ITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTE-LNLLVDFITAKNIHLISDEIY 233 (468)
T ss_pred CccCC-----------c-CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHH-HHHHHHHHHHCCcEEEEEccc
Confidence 11111 0 1678888887641 225665555544566777765554 999999999999999999999
Q ss_pred cCc-cccccch--hhcc------CC--CCch---hhhhhhcC-CCCcEEEEEecHH-HHHhhcCCCCccccCCCCCcHHH
Q 011856 290 TGF-RLAYGGA--QEYF------GV--TPDL---TTLGKIIG-GGLPVGAYGGRRD-IMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 290 ~g~-r~g~~~~--~~~~------g~--~pDi---~t~sK~lg-~G~~iG~~~~~~~-i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
.++ ..+..+. .... +. ...+ -+|||.++ +|+|+||++++++ +++.+.. .... .+.+.++
T Consensus 234 ~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~---~~~~--~~~s~~~ 308 (468)
T PLN02450 234 SGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATK---MSSF--GLVSSQT 308 (468)
T ss_pred cccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHH---Hhhc--CCCCHHH
Confidence 876 4432211 1111 11 1222 37999998 8999999999754 5665542 1111 2346778
Q ss_pred HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 354 MTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 354 ~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
+.++.+.|+.-.- ++.+++++++.+.+.+.|+ ++++....+..|.++|+.+...- . ........
T Consensus 309 Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~----~~gi~~~~~~~g~flwi~l~~~~-~------~~~~~~~~ 377 (468)
T PLN02450 309 QYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLE----AAGIKCLKSNAGLFCWVDMRHLL-K------SNTFEAEM 377 (468)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcccCCCceEEEEEEchHhc-C------cCCchHHH
Confidence 8887777642100 1122333334444444443 34433223445668888874210 0 00111223
Q ss_pred HHHHHHH-HCCeEeccCC------CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 429 RFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 429 ~~~~~l~-~~Gv~~~~~~------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++..++ ++||.+.|+. .+.+|+++. .+++++++++++|++++.+.
T Consensus 378 ~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 378 ELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESD 431 (468)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 5666666 5799999874 235788888 48999999999999988654
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=204.76 Aligned_cols=336 Identities=14% Similarity=0.139 Sum_probs=203.0
Q ss_pred EEecccChhhccCCCC--cHHHHHHHHHHHHhc------CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011856 101 YIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~~------~~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGse 166 (476)
.+||..+ ++.-.. .+.+.+++.+.+... ..|+ +..+++..+++++.+.++ .+++|++++|+++
T Consensus 32 ~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~ 108 (416)
T PRK09440 32 AIMLGGG---NPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQS 108 (416)
T ss_pred ceeccCC---CCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHH
Confidence 5777766 332122 235667776665432 1232 134677778887766543 5789999999999
Q ss_pred HHHHHHHHHHhc---cCCceEEE-EeCCCCCCchhHHhhc---CCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHH
Q 011856 167 ACMGVLRLARAF---TGRERIIK-FEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALEN 238 (476)
Q Consensus 167 A~~~al~~ar~~---~~~~~ii~-~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~ 238 (476)
++..++++.... ..++.|++ .+++|.++...+.... +.+....+.+. + .+.+ -|+++|+
T Consensus 109 al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~d~~~l~- 175 (416)
T PRK09440 109 AFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPE----------G--QFKYHVDFEHLH- 175 (416)
T ss_pred HHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccc----------c--ccccCCCHHHcc-
Confidence 999999843211 12467888 6899988654322111 00000000000 0 0001 1677776
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCc---hhhhhhh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD---LTTLGKI 315 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pD---i~t~sK~ 315 (476)
+. ..++++++...+|++|.+.+.++ +++|.++|++||++||+||+|..+.....+........+. +.+|||.
T Consensus 176 -~~---~~~~~i~l~~P~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~ 250 (416)
T PRK09440 176 -ID---EDTGAICVSRPTNPTGNVLTDEE-LEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL 250 (416)
T ss_pred -cC---CCceEEEEecCCCCCCccCCHHH-HHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc
Confidence 22 24566666555677888876555 9999999999999999999996431111110000001223 3379997
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHH
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT--------YEYLNKITGELTQGIIDA 387 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~--------~~~~~~~~~~l~~~L~~~ 387 (476)
..+|+|+||+++++++++.+.. .......+.+.+.+.++.++|+. .++ .+.++++.+.+++.|.+.
T Consensus 251 ~~pGlRiG~~i~~~~l~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~r~~~~~~~L~~~ 324 (416)
T PRK09440 251 GLPGVRCGIVIADEEIIEALSN---MNGIISLAPGRLGPAIAAEMIES---GDLLRLSETVIRPFYRQKVQLAIALLRRY 324 (416)
T ss_pred CCCcceEEEEeCCHHHHHHHHH---HHHHhccCCCcHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4489999999999999888763 12222345688888888887752 222 223344445555555544
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------------cceEEeCC
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------EAGFTSLA 454 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------~~~~~~~~ 454 (476)
....++....+..|.++|+.+..... ...++.+.|.++||.+.|+.. +++|+++.
T Consensus 325 l~~~~~~~~~p~gg~fiw~~~~~~~~------------~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~ 392 (416)
T PRK09440 325 LPDEPCLIHKPEGAIFLWLWFKDLPI------------TTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV 392 (416)
T ss_pred cccCCeEEecCCCceEEEEECCCCCC------------CHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec
Confidence 32222221223457888887743110 124677788899999988621 25788887
Q ss_pred CcHHHHHHHHHHHHHHHHHhh
Q 011856 455 HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+++++++++++|++++++..
T Consensus 393 ~~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 393 QDDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999987643
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=206.08 Aligned_cols=306 Identities=13% Similarity=0.112 Sum_probs=197.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
.+|+..|. +++|- ++.+ .......||.....+|.++++++++ .+++|++++|++|++..+++.. ..
T Consensus 30 ~~~l~~Ne--np~~~-~~~~--------~~~~~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~--~~ 96 (351)
T PRK01688 30 DVWLNANE--YPTAV-EFQL--------TQQTLNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAF--CE 96 (351)
T ss_pred ceEecCCC--CCCCC-Chhh--------cccccccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh--cC
Confidence 48887775 66663 3432 1111233566666789999998887 7889999999999999999842 22
Q ss_pred C-CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 180 G-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 180 ~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
. ++.|++.+++|..+. ..+...|..+...+...... -|++++++.+. ++++|++...+|+
T Consensus 97 ~g~~~vli~~P~y~~y~-~~~~~~G~~~~~v~~~~~~~--------------~d~~~l~~~~~----~~~lv~l~nPnNP 157 (351)
T PRK01688 97 PGKDAILYCPPTYGMYS-VSAETIGVEIRTVPTLDNWQ--------------LDLPAIADNLD----GVKVVYVCSPNNP 157 (351)
T ss_pred CCCCEEEEcCCCHHHHH-HHHHHcCCEEEEeecCCCCC--------------CCHHHHHHhcc----CCcEEEEeCCCCC
Confidence 3 367888888886533 33344454433322211111 17888888763 4555555555667
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+|.+.+.++ +++|.+.|++ +++||+||+|..| .... ........++++ ||||++| +|+|+||+++++++++
T Consensus 158 TG~~~~~~~-l~~l~~~~~~-~~~vivDEay~~f~~~~s--~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~ 233 (351)
T PRK01688 158 TGNLINPQD-LRTLLELTRG-KAIVVADEAYIEFCPQAS--LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVIN 233 (351)
T ss_pred CCCCCCHHH-HHHHHHhCCC-CcEEEEECchhhcCCCCC--hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHH
Confidence 788877554 7778877775 6899999999888 3221 112222234544 7999999 8999999999999998
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEeeeeceeEEEEEe
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFT 409 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~ 409 (476)
.+.+. ...++.|.+++.++.++|+.- +. .+..+.+.+.++++.+.|++ ++.. ...++.+.++++.+.
T Consensus 234 ~l~~~-----~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~ps~~nfi~~~~~ 304 (351)
T PRK01688 234 LLLKV-----IAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKE----IPCVEQVFDSETNYILARFT 304 (351)
T ss_pred HHHhc-----cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCeECCCCCcEEEEEcC
Confidence 88742 224566777777777777521 00 22334444445555555544 3222 233556777777652
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
+ ..++.+.|+++||+++..+ .+++|+++. +++++++++++|+
T Consensus 305 ~----------------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 305 A----------------SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred C----------------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhhC
Confidence 1 2578889999999998643 245788766 7899999998873
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=191.55 Aligned_cols=298 Identities=16% Similarity=0.085 Sum_probs=191.8
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
+...+|||..|. ++++ +|.+.+++.+.+.... .|+. ...|.++++++++ ++|++++|+++++..++.
T Consensus 6 ~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~~--~yp~--~~~l~~~ia~~~~--~~I~vt~G~~~al~~~~~--- 72 (311)
T PRK08354 6 REEGLIDFSASV--NPYP--PEWLDEMFERAKEISG--RYTY--YEWLEEEFSKLFG--EPIVITAGITEALYLIGI--- 72 (311)
T ss_pred CccceeEecCCC--CCCC--CHHHHHHHHHHHHHhh--cCCC--hHHHHHHHHHHHC--CCEEECCCHHHHHHHHHH---
Confidence 344689999874 5554 6899999988765432 3343 3567777777764 589999999999988775
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
...+++.|++.+++|.++...+ ...|..+ ..++ .|++.+++.+++ ....++++| +
T Consensus 73 ~~~~gd~vlv~~P~y~~~~~~~-~~~g~~~-------------------~~~~-~d~~~l~~~~~~---~~~vi~~~P-~ 127 (311)
T PRK08354 73 LALRDRKVIIPRHTYGEYERVA-RFFAARI-------------------IKGP-NDPEKLEELVER---NSVVFFCNP-N 127 (311)
T ss_pred hhCCCCeEEEeCCCcHHHHHHH-HHcCCEE-------------------eecC-CCHHHHHHhhcC---CCEEEEecC-C
Confidence 3346778999999988754433 3333322 1111 278888888763 335666677 4
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHh
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~ 334 (476)
|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+.. .. .....-+-+|||.++ +|+|+||+++ +.+.
T Consensus 128 NPTG~~~~~~~-l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~ 200 (311)
T PRK08354 128 NPDGKFYNFKE-LKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEA 200 (311)
T ss_pred CCCCCccCHHH-HHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHHH
Confidence 66787776555 999999999999999999999988 43211 11 111111237999999 9999999988 4444
Q ss_pred hcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc
Q 011856 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (476)
Q Consensus 335 l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (476)
++... ..+..+.++++++.+.++ +. .++++++.+.+++..+.+..... ..+.|.++.+.+.
T Consensus 201 l~~~~-----~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~----- 261 (311)
T PRK08354 201 FRSVR-----MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKALY----VKSDANFFIKDVG----- 261 (311)
T ss_pred HHHcC-----CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhcC----CCCCCcEEEEECC-----
Confidence 44211 133445555555554443 21 34555555555555554322221 2455666666442
Q ss_pred CchhhcccchHHHHHHHHHHHHCCeEeccCCC----cceEEeCCCcHHHHHHHHHHHHHH
Q 011856 415 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
+ ..++++.|+++||.+.++.. +++|+++. ++++.++++++|+++
T Consensus 262 --------~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 309 (311)
T PRK08354 262 --------D---AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR-DREENEKLIRALREW 309 (311)
T ss_pred --------C---HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 1 15678889999999998742 45677766 455677777777764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=198.36 Aligned_cols=296 Identities=12% Similarity=0.099 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCC
Q 011856 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 219 (476)
Q Consensus 140 ~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~ 219 (476)
...++.+.+++++ +.+.+++++||++++..++... ...++.|++....++.. ...+...|..
T Consensus 52 ~~~~~~e~lA~~~-g~~~~~i~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~h~s~-~~~~~~~g~~-------------- 113 (370)
T TIGR02539 52 PIHDFLEDLAEFL-GMDEARVTHGAREGKFAVMHAL--CKEGDWVVLDGLAHYTS-YVAAERAGLN-------------- 113 (370)
T ss_pred HHHHHHHHHHHHh-CCCceEEECChHHHHHHHHHHh--hCCCCEEEECCcccHHH-HHHHHHcCCE--------------
Confidence 4567777788888 6678888999999999998842 23445555544444443 3333333432
Q ss_pred CCCCceeeccCC-------CHHHHHHHHhcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 220 GATYETLTAPFN-------DVSALENLFENN----KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 220 ~~~~~~~~~~~~-------d~~~le~~l~~~----~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
+..+|++ |+++|++.+++. .+++++|+++.++++.|.+.+ +++|.++|++||++||+||+
T Consensus 114 -----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea 184 (370)
T TIGR02539 114 -----VKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCA 184 (370)
T ss_pred -----EEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECc
Confidence 2233332 899999998641 125677887777788899988 99999999999999999999
Q ss_pred ccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCC-----CCcHHHHHHHHHHH
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL-----SGNPLAMTAGIHTL 361 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~-----~~~~~~~aaa~aal 361 (476)
|.....+..+ ....+|++ +++|++++|.|+|++++++++++.+......+...+. .....++.++.+++
T Consensus 185 ~~~g~~~~~~----~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 260 (370)
T TIGR02539 185 YTVGRMPVSA----KEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASF 260 (370)
T ss_pred cccCCcCCCH----HHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHH
Confidence 9621111111 11235654 7999999777899999999999988753322111110 11123555666666
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 362 KRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 362 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
+...+ -+...+..++.++++++|+++..+. ....+....++.+.+... ......+......+.+.|+++||+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~s~t~~v~~~~~~~-----~~~~~~~~~~~~~~~~~L~e~GI~ 333 (370)
T TIGR02539 261 PHVVERVKRWDEEVKKTRWFVAELEDIGFIQ--LGQKPKEHDLVKFETPGF-----HEIAQKHKRRGYFLYEELKKRGIH 333 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EccCCCcCceEEEECCch-----hHHhhhhccccHHHHHHHHhCCCc
Confidence 54322 1112233344567888887753211 001123455555543210 000001112235688999999998
Q ss_pred -eccCCCcceEEe-CCCcHHHHHHHHHHHHHHHHH
Q 011856 441 -FAPSQFEAGFTS-LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 441 -~~~~~~~~~~~~-~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++++....+|++ ..++++|+++++++|++++++
T Consensus 334 ~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 334 GIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred cccCCcceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 776544567876 568999999999999998865
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=196.97 Aligned_cols=330 Identities=14% Similarity=0.112 Sum_probs=210.7
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCC---CCCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~---~~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
..++||..+ ++-...++.+.+++.+.+... ..| .+..+++..+++.+.+.+. .++++++++|+++++
T Consensus 33 ~~~~~l~~g---~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 33 DNVFDFSLG---NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCeEEecCc---CCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 356788776 332235788999888776542 112 1223566667777765432 578999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC-CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
..+++.. ...++.|++.+++|.++.. .+...|..+...+.... .++ |++++++.++. ++
T Consensus 110 ~~~~~~l--~~~gd~Vli~~p~~~~~~~-~~~~~g~~v~~v~~~~~~~~~--------------d~~~l~~~~~~---~~ 169 (394)
T PRK06836 110 NVALKAI--LNPGDEVIVFAPYFVEYRF-YVDNHGGKLVVVPTDTDTFQP--------------DLDALEAAITP---KT 169 (394)
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHH-HHHHcCCEEEEEecCCccCcC--------------CHHHHHhhcCc---Cc
Confidence 9998842 3455778888888877533 33344444333222111 111 78999998864 56
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG 317 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg 317 (476)
++|++...++++|.+.+.++ +++|.++|++ ||+++|+||+|.+| ..+.... ......++++ +|||.++
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~-~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~ 247 (394)
T PRK06836 170 KAVIINSPNNPTGVVYSEET-LKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKSLS 247 (394)
T ss_pred eEEEEeCCCCCCCcCCCHHH-HHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhhcc
Confidence 67777666777888887666 9999999999 89999999999888 4332111 1111112332 7999999
Q ss_pred -CCCcEEEEEecHHHHHh---hcCCCCcc-ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 318 -GGLPVGAYGGRRDIMEM---VAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 318 -~G~~iG~~~~~~~i~~~---l~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+|+|+||+++++++.+. +....... ..+.++.+++.+.++...++ +....+.++++.+.+.+.|++. +
T Consensus 248 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~~----g 320 (394)
T PRK06836 248 LPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTEL----G 320 (394)
T ss_pred CcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHhC----C
Confidence 89999999998876432 11000000 11123556677776655553 2223445666666666666553 3
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
+....+..|.++++.+... ...++++.|.++||.+.++. .+.+|+++..+++++++++++|+
T Consensus 321 ~~~~~~~gg~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~ 386 (394)
T PRK06836 321 FECVKPQGAFYLFPKSPEE--------------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFE 386 (394)
T ss_pred CEeecCCceEEEEEeCCCC--------------CHHHHHHHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 3222233456666655221 12467788889999999873 24678887789999999999999
Q ss_pred HHHHHh
Q 011856 469 KVKMRF 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+++++.
T Consensus 387 ~~l~~~ 392 (394)
T PRK06836 387 KLAKEY 392 (394)
T ss_pred HHHHHh
Confidence 998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=196.44 Aligned_cols=333 Identities=17% Similarity=0.145 Sum_probs=198.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
+++||.++..+ ..+|.+.+++.+. .......++.+...+|.+.+++++ +.+.++++++|++++..++... ..
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~la~~~-~~~~~~~~~~Gs~a~~~~l~~~--~~ 77 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANA-EVDDDVLGYDPTALRLEEEMAKIF-GKEAALFVPSGTMGNLISVLVH--CD 77 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhc-cCCCcccCCCHHHHHHHHHHHHHh-CCceeEEecCccHHHHHHHHHH--cc
Confidence 46788888433 3689999998764 111112234555678888888888 5566889999999998888742 22
Q ss_pred -CCceEEEEeCCCCCCchh--HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC----CCeEEEEE
Q 011856 180 -GRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIIL 252 (476)
Q Consensus 180 -~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~a~vi~ 252 (476)
+++.|++.+++|...... .....|..+... +..... ..|++++++.+++.. +++++|++
T Consensus 78 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~l 143 (353)
T PLN02721 78 VRGSEVILGDNSHIHLYENGGISTLGGVHPRTV--KNNEDG------------TMDLDAIEAAIRPKGDDHFPTTRLICL 143 (353)
T ss_pred CCCCeEEEcCccceehhcccchhhhcCceeEec--CCCcCC------------CcCHHHHHHHHHhccCCCCCcceEEEE
Confidence 567788888776433321 222223322211 110000 027999999997421 36788888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCc--hhhhhhhcCCCCcEEE-EEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pD--i~t~sK~lg~G~~iG~-~~~~ 328 (476)
++++++.|....+.+++++|.++|++||++||+||+|.-..... ...........| ++++||++++ |+|+ ++++
T Consensus 144 ~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~~ 221 (353)
T PLN02721 144 ENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVIVGS 221 (353)
T ss_pred eccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEEecC
Confidence 88776644444455569999999999999999999984111000 000111111223 3479999974 6776 5788
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFF 407 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~ 407 (476)
+++++.+........ ++.......+++++.+++.. .+..++..++.+++.+.|+++. ++.. .....+.++++.
T Consensus 222 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~ 295 (353)
T PLN02721 222 KSFIRKAKRLRKTLG-GGMRQVGVLAAAALVALQEN--VPKLEDDHKKAKLLAEGLNQIK---GLRVNVAAVETNIVYFD 295 (353)
T ss_pred HHHHHhHHHHHHhcC-CCeehhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCC---CcEEecCCccceEEEEE
Confidence 888876542111111 11111122233344444321 1123344556667777776541 1211 112345667776
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+.... ......+++.|.++||.+.+.....+|++ +.++++|+++++++|++++..
T Consensus 296 ~~~~~-----------~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 296 ITDGS-----------RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ccCCc-----------cccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 63210 01235788999999999999877777775 467999999999999988754
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=200.62 Aligned_cols=319 Identities=14% Similarity=0.112 Sum_probs=203.2
Q ss_pred ChhhccCCCCcHHHHHHHHHHHHhc-CCCCC--------CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 107 SWGPAIIGHADDQVLAALGETMKKG-TSFGA--------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 107 ~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~--------~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
+.+....||++|.+++++..+. .. +.+.. ..++..++++++++.++ +.+.+.++++|+++.+.++..++
T Consensus 24 ~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~ 102 (398)
T cd00613 24 FLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAI 102 (398)
T ss_pred cccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHH
Confidence 4444678999999888877666 32 12221 23567889999998885 34478888878877777777665
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEE
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi 251 (476)
...++++.|++...+|+.+...+...+... + .++..+++ .|++++++.+.. ++++|+
T Consensus 103 ~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~---------g------~~~~~v~~~~~~~~d~~~l~~~i~~---~t~~vi 164 (398)
T cd00613 103 RAYHKRNKVLVPDSAHPTNPAVARTRGEPL---------G------IEVVEVPSDEGGTVDLEALKEEVSE---EVAALM 164 (398)
T ss_pred hcccCCCEEEEcCccCcchHHHHHHhcccC---------C------cEEEEeccCCCCCcCHHHHHHhcCC---CeEEEE
Confidence 443334555566778988877776655210 0 01222222 168889888853 688888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC----CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG----GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg----~G~~iG~ 324 (476)
+++++ ++|.+. +++++|+++|++||++||+|++|... ..... ..+ .+|++ +++|.+. ||+++|+
T Consensus 165 v~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~~---~~~--~~d~~~~s~~K~~~p~g~Ggp~~g~ 235 (398)
T cd00613 165 VQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKPP---GEY--GADIVVGNLQKTGVPHGGGGPGAGF 235 (398)
T ss_pred EECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCCh---HHc--CCCEEEeeccccCCCCCCCCCceeE
Confidence 88865 567773 44799999999999999999998522 11111 112 36776 4678762 3678999
Q ss_pred EEecHHHHHhhcCCC-----------C---------------ccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 011856 325 YGGRRDIMEMVAPAG-----------P---------------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNK 375 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~-----------~---------------~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 375 (476)
++.++++++.+.... . .....+++++++.++++.++++.+.+ +++.+++++
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~ 315 (398)
T cd00613 236 FAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHL 315 (398)
T ss_pred EEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999988887653210 0 01123456667777777777776644 345688888
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC---CCcceEE-
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFT- 451 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~~~~- 451 (476)
++++++++|+++.... .+.. .....+.+.+... ......++.+.|+++||++... ....+|+
T Consensus 316 ~~~~l~~~L~~~~~~~-~~~~--~~~~~v~~~~~~~-----------~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis 381 (398)
T cd00613 316 NANYLAKRLKEVGGVL-PFNG--PFFHEFVLRLPPL-----------YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIE 381 (398)
T ss_pred HHHHHHHHHHhcCCcc-cCCC--CeeEEEEEEcCCc-----------chHHHHHHHHhhhhcCccccccccCCCCeEEEE
Confidence 9999999888763221 1100 1111223332110 0123467889999999987653 3345666
Q ss_pred -eCCCcHHHHHHHHHHH
Q 011856 452 -SLAHSSDDIQHTITAA 467 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l 467 (476)
+..+|++|||++++.|
T Consensus 382 ~~~~~t~edid~~~~~L 398 (398)
T cd00613 382 PTETETKEELDALLEAL 398 (398)
T ss_pred cCCCCCHHHHHHHHHhC
Confidence 5788999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=200.74 Aligned_cols=303 Identities=13% Similarity=0.075 Sum_probs=188.8
Q ss_pred CHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 138 CLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
.+++.++++++.+..+ .+++|++++|+++|++.+++.. ..+++.|++.++.|.+....+....|..+..++..
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l--~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~ 174 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCL--ADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCS 174 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHh--CCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCC
Confidence 5678888888876532 5789999999999999999842 34557788888888885433322345544332221
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
...+. . -|++++++.+++ ...++++|++...+|++|.+.+.++ +++|.++|++||++||+||+|
T Consensus 175 ~~~~~---------~---~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~-l~~L~~~a~~~~i~lI~DEiY 241 (496)
T PLN02376 175 SSDNF---------K---LTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDT-LTNLVRFVTRKNIHLVVDEIY 241 (496)
T ss_pred CCccC---------c---CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEEcCc
Confidence 11110 0 167888766532 1235666666555667888776555 999999999999999999999
Q ss_pred cCc-cccccch--hhc---cC---CCCc----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHH
Q 011856 290 TGF-RLAYGGA--QEY---FG---VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (476)
Q Consensus 290 ~g~-r~g~~~~--~~~---~g---~~pD----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~ 354 (476)
..+ ..+..+. .+. ++ ..++ +.+|||.+| +|+|+||+++ ++.+.+.++. .. .....+.+++
T Consensus 242 ~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~---~~--~~~~vs~~~Q 316 (496)
T PLN02376 242 AATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARK---MS--SFGLVSSQTQ 316 (496)
T ss_pred cccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHH---Hh--hcCCCCHHHH
Confidence 876 4432221 111 11 1234 237999998 8999999998 4666665442 11 1123567777
Q ss_pred HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 355 TAGIHTLKRLKEPGT--------YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 355 aaa~aal~~~~~~~~--------~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
.++.+.|+ ++++ +++++++.+.+.+.|++ .++....+..|+++|+.+...-.. ....+.
T Consensus 317 ~a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~----~gi~~~~~~aG~flwi~l~~~~~~------~~~~~~ 383 (496)
T PLN02376 317 LMLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKK----ADIACLTSNAGLFAWMDLRHLLRD------RNSFES 383 (496)
T ss_pred HHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccCCCceEEEEEEchhhhcc------CCchhH
Confidence 77766664 3333 22333333344444433 343322345678888888431100 001112
Q ss_pred HHHHHHHHHH-CCeEeccCC------CcceEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 427 FARFYRGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 427 ~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
..++++.+++ .||.+.|+. .+.+|+++. .+++++++++++|++++.+
T Consensus 384 e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 384 EIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred HHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 2467777776 599999873 235788887 5889999999999998853
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=193.30 Aligned_cols=313 Identities=13% Similarity=0.123 Sum_probs=196.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
+..++||..|. +.++ .++.+.+++.+.+.....|. +.....+|.+.++++++ .+++|++|+|+++++..+++
T Consensus 21 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--- 93 (349)
T PRK07908 21 GPGLLDFAVNV--RHDT-PPEWLRERLAARLGDLAAYP-STEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--- 93 (349)
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHhhHhhcCC-CccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh---
Confidence 56899998874 3344 68889999998876532232 12344567777777776 67899999999999998877
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
+ .++++++..++|.... ..+...|..+...+.....++ |++++ ++ +++++++...+
T Consensus 94 -l-~~~~viv~~P~y~~~~-~~~~~~G~~i~~v~~~~~~~~--------------d~~~l----~~---~~~~i~l~np~ 149 (349)
T PRK07908 94 -L-RPRRAAVVHPSFTEPE-AALRAAGIPVHRVVLDPPFRL--------------DPAAV----PD---DADLVVIGNPT 149 (349)
T ss_pred -c-CCCeEEEeCCCChHHH-HHHHHcCCEEEeeccCcccCc--------------ChhHh----cc---CCCEEEEcCCC
Confidence 2 2367777788886643 333344543332221110011 44433 22 45566665556
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
|++|.+.+ .++|.++|++ +.++|+||+|..|..+........+ .++++ +|||.++ +|+|+||++++++++
T Consensus 150 NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~ 223 (349)
T PRK07908 150 NPTSVLHP----AEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDD-LPGVLVLRSLTKTWSLAGLRVGYALGAPDVL 223 (349)
T ss_pred CCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhccCCcccccccc-CCCEEEEeecccccCCccceeeeeecCHHHH
Confidence 77888888 5677888864 7788899999876222211111111 12333 7899999 899999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+.+.+.. ..+..+++.++++.+.++.. +. ++.+++++++.+++.+.|++. ++....+..|.++++.+.
T Consensus 224 ~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~p~~g~~~~~~~~ 294 (349)
T PRK07908 224 ARLTRGR-----AHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV----GARVVDPAAAPFVLVRVP 294 (349)
T ss_pred HHHHhcC-----CCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC----CcEeccCCCceEEEEECC
Confidence 9886421 12445566666555444310 00 223444555555555555443 332222356888888763
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+ ...+.+.|.++||.+.++. .+++|+++ .+++++++++++|++++..
T Consensus 295 ~----------------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 295 D----------------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAEILKA 347 (349)
T ss_pred c----------------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHHHHhc
Confidence 1 1467788889999998863 24678887 4788999999999988653
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=196.67 Aligned_cols=339 Identities=13% Similarity=0.110 Sum_probs=204.9
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHh-------------cCCC---CCCCHHHHHHHHHHHhhCC-----CCCeE
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKK-------------GTSF---GAPCLLENVLAEMVISAVP-----SIEMV 158 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~-------------~~~~---~~~~~~~~~la~~l~~~~~-----~~e~v 158 (476)
-+|++...- |.| .+..+.+.+.+..+. ...| .+..+++.++++.+.+.++ .+++|
T Consensus 48 g~i~l~~ae--N~l--~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~I 123 (447)
T PLN02607 48 GVIQMGLAE--NQV--SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRI 123 (447)
T ss_pred ceEEEechh--hhh--hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHe
Confidence 377766553 323 456677666654321 0111 2345777888888877542 56899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++|+++|++.++.. ....++.|++..+.|.+.........|..+..++.....++ .-|++++++
T Consensus 124 vit~G~t~al~~l~~~--l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f------------~~~~~~le~ 189 (447)
T PLN02607 124 VLTAGATAANELLTFI--LADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNF------------QVTPQALEA 189 (447)
T ss_pred EEcCChHHHHHHHHHH--hCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCC------------cCCHHHHHH
Confidence 9999999999998773 23456778888888877644332233443332221111110 017889998
Q ss_pred HHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch--hhc---cCC-C-C
Q 011856 239 LFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA--QEY---FGV-T-P 307 (476)
Q Consensus 239 ~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~--~~~---~g~-~-p 307 (476)
++++ .+.+++++++...+|++|.+.+.+ .+++|.++|++|+++||+||+|.++ ..+..+. .+. .+. . +
T Consensus 190 a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e-~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~ 268 (447)
T PLN02607 190 AYQEAEAANIRVRGVLITNPSNPLGATVQRS-VLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVA 268 (447)
T ss_pred HHHHHHHhCCCeeEEEEeCCCCCcCcccCHH-HHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCc
Confidence 8864 123566666654556677776644 4999999999999999999999875 3322111 111 111 1 2
Q ss_pred c-h---hhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcCCCHH-HHHHHHHHH
Q 011856 308 D-L---TTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTY-EYLNKITGE 379 (476)
Q Consensus 308 D-i---~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~-~~~~~~~~~ 379 (476)
+ + .+|||.+| +|+|+||+++ ++++++.++. . ..+ +.+.+++.++.+.|+ ++++. +.+.++.++
T Consensus 269 ~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~---~---~~~~~~s~~~q~~~~~~L~---d~~~~~~~l~~~r~~ 339 (447)
T PLN02607 269 ERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---M---SSFTLVSSQTQHLLASMLS---DEEFTENYIRTNRER 339 (447)
T ss_pred CcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHH---H---hhcCCCCHHHHHHHHHHhC---CchhHHHHHHHHHHH
Confidence 3 2 27999999 8999999988 6777776652 1 122 345666666655553 33332 223333333
Q ss_pred HHH---HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------Ccce
Q 011856 380 LTQ---GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAG 449 (476)
Q Consensus 380 l~~---~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~ 449 (476)
+++ .+.+.+.++++.......|.++|+.+...- ..+..+...++++.+++ +||.+.|+. .+.+
T Consensus 340 l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~-------~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~f 412 (447)
T PLN02607 340 LRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLL-------ETPTREGELALWDSILREVKLNISPGSSCHCSEPGWF 412 (447)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhh-------cCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEE
Confidence 322 222333334443333456888998884310 00111222466767765 699999874 2357
Q ss_pred EEeCCC-cHHHHHHHHHHHHHHHHH
Q 011856 450 FTSLAH-SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 450 ~~~~~~-t~e~i~~~~~~l~~~~~~ 473 (476)
|+++.. +++++++++++|.+++++
T Consensus 413 Ri~fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 413 RVCFANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHH
Confidence 888885 899999999999998864
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=199.89 Aligned_cols=335 Identities=16% Similarity=0.119 Sum_probs=195.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC-C----CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-P----CLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~-~----~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
+..++|+..|. ..++ .+|.+.+++.+.+.+. ...+| + .+++.++++.+.+..-.+++|++++|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al 108 (402)
T TIGR03542 32 SADIIRLGIGD--TTQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV 108 (402)
T ss_pred CCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence 45678887773 2233 4788899988887653 11222 3 3444555554322112678999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCC-CCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
...+. .+.+++.|++.+++|.++...+. ..|. ++.. ..+. ...+..++.++-+.+...+.+. .++
T Consensus 109 ~~l~~---l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~-----~~~~----~~~~~~v~~~~~~~~~~~~~~~-~~~ 174 (402)
T TIGR03542 109 FRLQS---LFGSDNTVAVQDPVYPAYVDSNV-MAGRAGVLD-----DDGR----YSKITYLPCTKENNFIPDLPEE-PKI 174 (402)
T ss_pred HHHHH---hcCCCCEEEEeCCCCcchHHHHH-HcCCccccc-----cccc----cceEEEeecchhhCCCCCcccc-CCc
Confidence 87544 34566789999999988654443 3333 1110 0000 0012223321100010001111 245
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cch-hhccC---CCCchhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEYFG---VTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~-~~~~g---~~pDi~t~sK~lg-~G~ 320 (476)
++|++...+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+. ... ....+ ....+.+|||.+| +|+
T Consensus 175 ~~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl 253 (402)
T TIGR03542 175 DIIYLCSPNNPTGTVLTKEQ-LKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV 253 (402)
T ss_pred eEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCc
Confidence 66666556677888776555 999999999999999999999888 4332 111 11111 1112338999998 899
Q ss_pred cEEEEEecHHHH--------HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 321 PVGAYGGRRDIM--------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 321 ~iG~~~~~~~i~--------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
|+||++++++++ +.+.. .......+.+.+++.++.+.++.-.. .+..+.++++.+.+.+.|++
T Consensus 254 RiG~~i~~~~l~~~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~--- 327 (402)
T TIGR03542 254 RLGWTVVPKELTYADGHSVIQDWER---RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA--- 327 (402)
T ss_pred ceEEEEecHHHhhcchhhHHHHHHH---HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999998876 22210 00111224577788777666642110 11233344455555555544
Q ss_pred hcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHH
Q 011856 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQH 462 (476)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~ 462 (476)
+++....+..|.++++.+... ....++...|+ ++||.+.++. .+.+|+++..+++++++
T Consensus 328 -~~~~~~~~~~~~f~~v~l~~~-------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~ 393 (402)
T TIGR03542 328 -AGFKVYGGEHAPYLWVKTPEG-------------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVE 393 (402)
T ss_pred -cCceecCCCceeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHH
Confidence 332211122566888887421 01246777777 5699999863 24578887779999999
Q ss_pred HHHHHHHH
Q 011856 463 TITAAEKV 470 (476)
Q Consensus 463 ~~~~l~~~ 470 (476)
++++|+++
T Consensus 394 ~l~~l~~~ 401 (402)
T TIGR03542 394 ACERIKEA 401 (402)
T ss_pred HHHHHHhh
Confidence 99999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=195.84 Aligned_cols=319 Identities=18% Similarity=0.146 Sum_probs=200.2
Q ss_pred ecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 103 D~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
||++. +++| .+|.+.+++.+.+.... ..++.....++.+.++++++ .++++++++|++++..+++.. ..+++
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l--~~~gd 72 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGDD-VYGEDPTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAH--TQPGG 72 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCCc-ccCCCHHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHh--cCCCC
Confidence 67777 8888 88999999988654322 23467778899999999985 778999999999999999842 23445
Q ss_pred eEEEEeCCCCCCchh---HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC----CCeEEEEEccc
Q 011856 183 RIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPV 255 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~a~vi~ep~ 255 (476)
.|++ ....|..... .....|..+...+.. .+ ..|+++|++++++.. +++++|+++++
T Consensus 73 ~v~~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 73 SVIC-HETAHIYTDEAGAPEFLSGVKLLPVPGE--NG-------------KLTPEDLEAAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred eEEE-ecCcceeeecCCcHHHHcCceEEeecCC--CC-------------cCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence 5554 4444443221 112233332221110 00 128999999987521 24677777665
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---cccccchhhccCCCCchh--hhhhhcCCCCcEEEE-EecH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRR 329 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~-~~~~ 329 (476)
+++|| +. +.+.+++|.++|++||++||+||+|..+ ..+. ........+|++ +++|.++. +.|++ ++++
T Consensus 137 ~n~g~-~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~~~ 210 (338)
T cd06502 137 TEGGT-VY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVGNR 210 (338)
T ss_pred cCCcc-cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEECCH
Confidence 55544 44 4455999999999999999999998422 1121 112222345554 68999973 34554 6788
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
++++.+..... .+.++++.+++.++++.++|+.-...+..+++.++.+++.+.|+++... .....+.++.+.+.
T Consensus 211 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-----~~~~~~~~~~v~~~ 284 (338)
T cd06502 211 DFIARARRRRK-QAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGL-----ESEVQTNIVLLDPV 284 (338)
T ss_pred HHHHHHHHHHH-HhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCC-----cccccCCeEEEecC
Confidence 88887763111 1224556677777887777753111345577777788888888765321 11234555555442
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHH---HCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGML---EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
. ......++.+.+. ++|+++.+.+...+|+ ++.+|++|++++++++++
T Consensus 285 ~------------~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 285 E------------ANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred C------------ccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 1 1122234444443 7899998775566776 566799999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=194.42 Aligned_cols=295 Identities=18% Similarity=0.170 Sum_probs=190.8
Q ss_pred CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 213 (476)
..+++.++++.+...++ +.+.+++++||++++..+++.. ...+++|++..++|++.. ..+...+..+...+...
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~--~~~g~~vl~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 114 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL--LNPGDEVLVPDPTYPGYE-AAARLAGAEVVPVPLDE 114 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh--CCCCCEEEEcCCCchhHH-HHHHHCCCEEEEEeccc
Confidence 34667777777776642 3678999999999999999853 234567777777766643 34333333222111110
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
.... ..+.+.++... .+++++|++++.++++|.+.+ .+.+++|.++|+++|+++|+||+|+++
T Consensus 115 ~~~~------------~~~~~~~~~~~---~~~~~~v~i~~~~~~tG~~~~-~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 115 EGGF------------LLDLELLEAAK---TPKTKLLYLNNPNNPTGAVLS-EEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred ccCC------------ccCHHHHHhhc---CccceEEEEECCCCCCCcccC-HHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 0000 00114444433 247889999998888898776 444999999999999999999999877
Q ss_pred cccccc----hhhccCCCCchhhhhhhcC-CCCcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-
Q 011856 293 RLAYGG----AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 365 (476)
Q Consensus 293 r~g~~~----~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 365 (476)
..+... .....+....+.+++|.++ +|+++|++++++ ++++.+.. .....+++.+...+.++..+|+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (350)
T cd00609 179 YDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKK---LLPYTTSGPSTLSQAAAAAALDDGEE 255 (350)
T ss_pred eCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHH---HHHhcccCCChHHHHHHHHHHhCcHH
Confidence 433321 1111222222337999999 889999999998 78888763 2233356778888888888887652
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 366 E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 366 ~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
. +...+++.++.+++.+.|++...... .....|.++++.+... .....+.+.|.++||.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~---~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~i~~~ 319 (350)
T cd00609 256 HLEELRERYRRRRDALLEALKELGPLVV---VKPSGGFFLWLDLPEG-------------DDEEFLERLLLEAGVVVRPG 319 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccc---cCCCccEEEEEecCCC-------------ChHHHHHHHHHhCCEEEecc
Confidence 1 45556666677777777765422110 3445677777766321 11235566777889999876
Q ss_pred ------CCcceEEeCCCcHHHHHHHHHHHHH
Q 011856 445 ------QFEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 445 ------~~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
....+|+++...++|+++++++|++
T Consensus 320 ~~~~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 320 SAFGEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred cccccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 3346788655559999999998863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=195.52 Aligned_cols=286 Identities=12% Similarity=0.104 Sum_probs=183.1
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCC-CCCCC
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGV 217 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~~~ 217 (476)
..+|.+.+++++. ..++|++++|+++++..+++.. ...+ +.|++.++.| +.+.......|..+...+.. ...++
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~~~g~~~vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~~ 137 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRAL--CVPGRDAVLVTPPVF-GMYAVCARLQNAPLVEVPLVDGADGF 137 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHh--cCCCCCeEEEcCCCh-HHHHHHHHHcCCEEEEEecCCCccCC
Confidence 4677777777775 6789999999999999999832 2233 5566666654 43333334445443332221 01111
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~ 296 (476)
. -|++++++.+.. +++++|++...+|++|.+.+.++ +++|.++|+ +++++|+||+|..| ....
T Consensus 138 ~------------~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~-~~~l~~~~~-~~~~iI~Deay~~f~~~~~ 201 (364)
T PRK04781 138 H------------ADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQ-IERALQALQ-GKALVVVDEAYGEFSDVPS 201 (364)
T ss_pred C------------cCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHH-HHHHHHhCC-CCcEEEEeCcchhhcCCcc
Confidence 0 167777655433 25666666666677888887444 666666664 48999999999888 3211
Q ss_pred cchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc--C-CCH
Q 011856 297 GGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGT 369 (476)
Q Consensus 297 ~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~~ 369 (476)
. ....+..++++ ||||++| +|+|+||+++++++++.+.+. ...++.+.+++.++.++|+.-. . .+.
T Consensus 202 ~--~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 274 (364)
T PRK04781 202 A--VGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRC-----QAPYPVPTPCAALAEQALSAPALAVTARR 274 (364)
T ss_pred h--HHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHhcccHHHHHHH
Confidence 1 11122234443 7999999 899999999999999988742 2346678888888877775211 0 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---- 445 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---- 445 (476)
.++++++.+.+.+.|+++. ++....+..|+++++.+.+ ..++.+.|.++||.+.++.
T Consensus 275 ~~~~~~~r~~l~~~L~~~~---~~~~~~p~~g~f~~~~~~~----------------~~~~~~~l~~~gI~v~~~~~~~~ 335 (364)
T PRK04781 275 VAEVRAERERLHAALAQLP---GVRRVYPSQGNFLLVRFDD----------------AEAAFQALLAAGVVVRDQRAAPR 335 (364)
T ss_pred HHHHHHHHHHHHHHHHhCC---CCCeECCCCCcEEEEEcCC----------------HHHHHHHHHHCCeEEeeCCCCCC
Confidence 3334445555555554421 2222345678888887631 1467888999999998864
Q ss_pred -CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 446 -FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 446 -~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+++|+++. +++++++++++|+++..
T Consensus 336 ~~~~~Ris~~-~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 336 LSDALRITLG-TPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCCeEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 235777766 68899999999988654
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=191.79 Aligned_cols=320 Identities=17% Similarity=0.123 Sum_probs=195.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccC
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
+|||.++ .+-| .+|.+.+++.+...... .+++.....+|.+.+++++ +.+.+++++||++++..++... ...
T Consensus 1 ~~~~~~~---~~~~-p~~~~~~a~~~~~~~~~-~Y~~~~~~~~L~~~la~~~-g~~~~~v~~~g~~a~~~~l~~~--~~~ 72 (333)
T PRK10534 1 MIDLRSD---TVTR-PSRAMLEAMMAAPVGDD-VYGDDPTVNALQDYAAELS-GKEAALFLPTGTQANLVALLSH--CER 72 (333)
T ss_pred Ccccccc---cCCC-CCHHHHHHHHhccCCCc-ccCCCHHHHHHHHHHHHHh-CCCeEEEeCchHHHHHHHHHHh--cCC
Confidence 4789988 5555 88999999887554332 2237888889999999988 5667789999999998888742 334
Q ss_pred CceEEEEeCCCCCCchh--HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---CCeEEEEEccc
Q 011856 181 RERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPV 255 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~ 255 (476)
+++|++..++|...+.. .....+..+.. ++.... -..|+++|++.++.+. .++++|+++.+
T Consensus 73 gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~~~d~~~l~~~i~~~~~~~~~~~lv~l~np 138 (333)
T PRK10534 73 GEEYIVGQAAHNYLYEAGGAAVLGSIQPQP--IDAAAD------------GTLPLDKVAAKIKPDDIHFARTRLLSLENT 138 (333)
T ss_pred CCeeEEechhhhhHhcCCchHHhcCceEEe--ecCCCC------------CCCCHHHHHHhhcccCcCcccceEEEEecC
Confidence 56666554444221111 11111111111 110000 0127899988885310 13566666632
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCc--hhhhhhhcCCCCcEE-EEEecHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD--LTTLGKIIGGGLPVG-AYGGRRD 330 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pD--i~t~sK~lg~G~~iG-~~~~~~~ 330 (476)
+ +|.+.+.++ +++|.++|++||++||+||+|. | .... ..........+| +++|||+++. ++| |++++++
T Consensus 139 ~--~G~v~~~~~-l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~--~~G~~~~~~~~ 212 (333)
T PRK10534 139 H--NGKVLPREY-LKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSFTICLSKGLGT--PVGSLLVGNRD 212 (333)
T ss_pred C--CCeecCHHH-HHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC--cccceEEcCHH
Confidence 2 488777555 8999999999999999999986 3 2110 001111111123 3479998763 578 5778999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (476)
+++.++..... ....++.+.++++++.++|+.. .+.+++..+.++++.+.|+++ ++. ..++.+.|+++.+..
T Consensus 213 ~i~~~~~~~~~-~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~~-~~~~~~nfv~~~~~~ 284 (333)
T PRK10534 213 YIKRARRWRKM-TGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GAD-VMRQDTNMLFVRVGE 284 (333)
T ss_pred HHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CCc-cCCCCceEEEEECCc
Confidence 98888631111 1112233456677777777532 233444445566777777764 221 123457777766531
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
....++.+.|+++||++.++. .+++ ++.+|++++++++++|++++.
T Consensus 285 --------------~~~~~~~~~l~~~gi~v~~~~--~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 285 --------------EQAAALGEYMRERNVLINASP--IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred --------------hhHHHHHHHHHHcCeeecCCc--eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 113567788999999998864 3555 445899999999999997764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=197.90 Aligned_cols=332 Identities=14% Similarity=0.153 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHHh--cC-C--CC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEE
Q 011856 117 DDQVLAALGETMKK--GT-S--FG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERII 185 (476)
Q Consensus 117 ~p~v~~a~~~~l~~--~~-~--~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii 185 (476)
+.++++++.+.+.. +. . |+ +..++++.+++++.+..+ .+++|++|+|+++|+..++++.. -..++.|+
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~-~~~gd~Vl 220 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-RSEKDGIL 220 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc-cCCCCEEE
Confidence 45666666676665 21 1 22 234677777777776543 57899999999999999999421 12468899
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCCCCCC--CCCCCCCCCceeeccCCCHHHHHHHHhcCC---CCeEEEEEcccCCCCC
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSG 260 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G 260 (476)
+..++|.++. ..+...|..+..+++... +++ |+++|++.+++.. .+++++++...+|++|
T Consensus 221 i~~P~Y~~y~-~~~~~~g~~~v~~~l~~~~~~~~--------------d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG 285 (534)
T PLN02231 221 CPIPQYPLYS-ASIALHGGTLVPYYLDEATGWGL--------------EISELKKQLEDARSKGITVRALVVINPGNPTG 285 (534)
T ss_pred EeCCCChhHH-HHHHHcCCEEEEEecCcccCCCC--------------CHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC
Confidence 9999998754 334444443333222111 111 7899999886421 1455544444456678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-cccc-hhhc----cCC---CCchh---hhhhhc-C-CCCcEEEE
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-AQEY----FGV---TPDLT---TLGKII-G-GGLPVGAY 325 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~~~-~~~~----~g~---~pDi~---t~sK~l-g-~G~~iG~~ 325 (476)
.+.+.++ +++|.++|++||++||+||+|..+ .. +..+ .... .|. ...++ +|||.+ + .|+|+||+
T Consensus 286 ~vls~e~-l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~ 364 (534)
T PLN02231 286 QVLAEEN-QRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 364 (534)
T ss_pred cCCCHHH-HHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEE
Confidence 7776555 999999999999999999999887 43 2221 1111 111 11233 789987 5 79999999
Q ss_pred Ee---cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-------c----C-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 326 GG---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------K----E-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 326 ~~---~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~----~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
++ ++++++.+.+. .. .+.+.+.+++.++..+++-- + + +++++.++++.+.+.+.|+++
T Consensus 365 ~~~~~~~~l~~~l~k~---~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~--- 437 (534)
T PLN02231 365 EVTGFTSDVREQIYKV---AS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL--- 437 (534)
T ss_pred EEecCCHHHHHHHHHH---Hh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 75 68888887632 11 23455667777776666311 0 0 123445566666666666543
Q ss_pred cCCceEeeeeceeEEE-EEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCC-------cceEEeCCCcHHHHH
Q 011856 391 AGHAICGGYISGMFGF-FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLAHSSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-------~~~~~~~~~t~e~i~ 461 (476)
+.+...+..|.|+.| .+.-+. ................++..|+ +.||.+.|+.. .++|+++..++++++
T Consensus 438 -~gi~~~~p~Ggfylw~~l~lp~-~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~ 515 (534)
T PLN02231 438 -EGVTCNKAEGAMYLFPRIHLPQ-KAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIP 515 (534)
T ss_pred -CCceecCCCeeeEEeccccCcH-HHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHH
Confidence 222333444555444 332110 0000000000000123455555 67999998741 237888888999999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|.+++++.
T Consensus 516 eal~RL~~~~~~~ 528 (534)
T PLN02231 516 AIVSRLTEFHKSF 528 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=192.48 Aligned_cols=297 Identities=16% Similarity=0.102 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHhhCCC---CCeEEE--eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-
Q 011856 138 CLLENVLAEMVISAVPS---IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL- 211 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~---~e~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~- 211 (476)
.++++++++++.+.... .++|.. +.+|+.+....+.+...+.+++.|++.+++|.++. ..+...|..+..++.
T Consensus 94 ~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~-~~~~~~g~~~~~v~l~ 172 (423)
T PLN02397 94 AEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH-NIFRDAGVPVRTYRYY 172 (423)
T ss_pred HHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH-HHHHHcCCeEEEeecc
Confidence 35666666666443211 133321 33444443333333223446678999999887754 334444443333221
Q ss_pred C-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 212 P-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
+ ...+ .|++.+++.+++..+++.++++...+|++|.+.+.++ +++|.++|++||+++|+||+|.
T Consensus 173 ~~~~~~--------------~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~-l~~i~~~a~~~~~~vI~De~Y~ 237 (423)
T PLN02397 173 DPKTRG--------------LDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQ-WEQISDLIKSKNHLPFFDSAYQ 237 (423)
T ss_pred cCcCCc--------------cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEecccC
Confidence 1 0111 1788888888654335566666666777888776554 9999999999999999999999
Q ss_pred Cc-cccc---cchhhcc-CCCCchh---hhhhhcC-CCCcEEEEE--e-cHHHHHhhcCC-CCccccCCCCCcHHHHHHH
Q 011856 291 GF-RLAY---GGAQEYF-GVTPDLT---TLGKIIG-GGLPVGAYG--G-RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 291 g~-r~g~---~~~~~~~-g~~pDi~---t~sK~lg-~G~~iG~~~--~-~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa 357 (476)
+| ..+. ......+ ....+++ +|||.++ .|||+||++ + ++++++.+... .........+.+.+++.++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 317 (423)
T PLN02397 238 GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIV 317 (423)
T ss_pred CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 88 4321 1111111 1112233 7999999 899999984 3 56554432210 0111122334566777777
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHH
Q 011856 358 IHTLKRLK--------EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (476)
Q Consensus 358 ~aal~~~~--------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (476)
.++|+.-. -++.+++++++.+.+.+.|+++....++....+..|.++|+.+. .+
T Consensus 318 ~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~------------------~~ 379 (423)
T PLN02397 318 ATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN------------------KE 379 (423)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC------------------HH
Confidence 66664210 02344566667777777777652111122122445555555441 24
Q ss_pred HHHHHH-HCCeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHH
Q 011856 430 FYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 430 ~~~~l~-~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~ 472 (476)
+++.|+ ++||++.+.+ |++++ .+++.+++++++|+++++
T Consensus 380 ~~~~Ll~~~~V~v~~~~----Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 380 QVDRMTKEYHIYMTRDG----RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHhCCEEECCCC----eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 666775 5699997543 88775 899999999999999975
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=179.91 Aligned_cols=379 Identities=18% Similarity=0.217 Sum_probs=260.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK- 130 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~- 130 (476)
.++..+..++|.|...-.+.-.--+ -..+.+++..-+..++ +||+.+++|.+. |+||. .++++.+.+...+.+
T Consensus 50 ~~eideLiedw~PEPLV~~~~~~~~-~~~~~v~e~~~~~~~~-i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrky 124 (467)
T KOG1358|consen 50 EQEIDELIEDWEPEPLVPPVPEDHP-VLNTPVLESVMLPHVT-IDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKY 124 (467)
T ss_pred HHHHHHHHhcCCCCCCCCCCccccc-ccCCcccccccCCceE-ecCceeecccch---hhhhhcccHHHHHHHHHHHHHh
Confidence 4677788888998876544320000 1124567778888877 999999999998 99998 699999999999988
Q ss_pred c--C----CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCC
Q 011856 131 G--T----SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 204 (476)
Q Consensus 131 ~--~----~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~ 204 (476)
| . .|++..+.+.+|.+.+++++ +.+..++.+-|..++..++. ++.++++||..+...+-.....+.
T Consensus 125 GvGsCGPrGFYGt~DvHldlE~~iakF~-G~E~aivYs~gF~ti~S~ip---afsKrGDIi~~de~~nfaIq~Glq---- 196 (467)
T KOG1358|consen 125 GVGSCGPRGFYGTIDVHLDLEKRIAKFM-GTEDAIVYSYGFSTIESAIP---AFSKRGDIIFVDEAVNFAIQKGLQ---- 196 (467)
T ss_pred CCCCcCCCcccccceeecccHHHHHHhh-CCcceeeeccccchhhhcch---hhhccCcEEEEehhhhHHHHHHHh----
Confidence 2 2 23345566667777777777 66666666668999999999 899999999987654432222222
Q ss_pred CCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-------C---CeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-------G---EIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-------~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
..+..+..+.|||+++||+++.+.. . ....+++|..+.|.|.+.| +.+|.+
T Consensus 197 ---------------lSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~ 257 (467)
T KOG1358|consen 197 ---------------LSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVK 257 (467)
T ss_pred ---------------hhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHH
Confidence 2233578889999999998886432 1 1467889999999999999 999999
Q ss_pred HHHHhCCEEEEeccc-cCc-cccccchhhccCCCC---chhh--hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCC
Q 011856 275 ITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP---DLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (476)
Q Consensus 275 l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~p---Di~t--~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~ 347 (476)
+..||...+|.||.+ .|. ...+.+..+|+++.+ |+++ +.-++++ -.|+.+|+.-+++.-+-.+..+.++ -
T Consensus 258 lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas--~GgFc~G~~~i~~hQrLSg~~Y~fS-A 334 (467)
T KOG1358|consen 258 LKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS--GGGFCAGKSFIADHQRLSGSGYCFS-A 334 (467)
T ss_pred HHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc--cCceeecceeeEeeeeccccceeee-c
Confidence 999999999999999 455 333466789999864 5665 4445553 1455566555544433233444443 3
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 348 SGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
+.+|....||..+++.++. ++..+.++.....+.+.|+.. .++...-.....++.+.+.....+. ..+...
T Consensus 335 slPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s~-----e~e~~l 406 (467)
T KOG1358|consen 335 SLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGSR-----EKEEKL 406 (467)
T ss_pred cCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcC---CceEEecCcCCceeeeeecccccch-----HHHHHH
Confidence 6678888999999998876 777888888888888877762 1122211223445555554321110 112344
Q ss_pred HHHHHHHHHHCCeEeccCC----------CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 427 FARFYRGMLEEGVYFAPSQ----------FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 427 ~~~~~~~l~~~Gv~~~~~~----------~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++..++.+|+++.... .+.+++ +..+++||++++.+.++++..++
T Consensus 407 L~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 407 LEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred HHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 5678888887788876542 123444 68899999999999999987664
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=186.47 Aligned_cols=313 Identities=19% Similarity=0.138 Sum_probs=197.2
Q ss_pred CCCcHHHHHHHHHHHHhc--CCCCCC--CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc--CCceEEE
Q 011856 114 GHADDQVLAALGETMKKG--TSFGAP--CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT--GRERIIK 186 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~--~~~~~~--~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~--~~~~ii~ 186 (476)
.+.+|.+++++.+++... ....++ .+...+++++++++++ ..+.+++++||+++++.+++.++... ++++|++
T Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~ 109 (371)
T PRK13520 30 TEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVV 109 (371)
T ss_pred cCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEe
Confidence 347899999999988752 111122 2444788899999886 34578999999999999998765542 3567777
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
.+..+.. ....+...|..+...+... .+ ..|+++|++.+++ ++++|++...++++|.+.|
T Consensus 110 ~~~~h~s-~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~-- 169 (371)
T PRK13520 110 PESAHFS-FDKAADMLGVELRRAPLDD-DY-------------RVDVKAVEDLIDD---NTIGIVGIAGTTELGQVDP-- 169 (371)
T ss_pred cCcchHH-HHHHHHHcCceEEEecCCC-CC-------------cCCHHHHHHHHhh---CCEEEEEEcCCcCCcccCC--
Confidence 7665443 2222222333222211110 00 1279999999974 3444554444566899988
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-c-cccc---chhhccCCCCchhh--hhhhcCCCCcEEEEEe-cHHHHHhhcCC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-R-LAYG---GAQEYFGVTPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPA 338 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g~~---~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~-~~~i~~~l~~~ 338 (476)
+++|.++|++||+++++||+|+++ - .... +..... ..|.++ ..|...+|+|+|+++. ++++++.+...
T Consensus 170 --l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~ 245 (371)
T PRK13520 170 --IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD 245 (371)
T ss_pred --HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHhhccc
Confidence 999999999999999999999765 1 1111 111111 234443 3464446789998865 66677766421
Q ss_pred CCcc-------ccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 339 GPMY-------QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 339 ~~~~-------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
.+.. ..+|. ++..++++.++|+.+.++ +..++..++.+++++.|+++ ++.........++.+.+
T Consensus 246 ~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~ 319 (371)
T PRK13520 246 TPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GFEPVIEPVLNIVAFDD 319 (371)
T ss_pred CccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CCEEecCCCceEEEEec
Confidence 1111 11222 334577777888876543 46677778888888887764 22111223344555544
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
. + ..++.+.|.++||.+..... ..+|++ ..+|++|++++++.|+++++
T Consensus 320 ~-------------~---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 320 P-------------N---PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred C-------------C---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 2 1 25788889999999987653 346764 45799999999999998765
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=187.82 Aligned_cols=332 Identities=12% Similarity=0.072 Sum_probs=202.3
Q ss_pred ccCCCCcHHHHHHHHHHHHh-cCC-C---C---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 111 AIIGHADDQVLAALGETMKK-GTS-F---G---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~-~~~-~---~---~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
.-+|..++.+++|+.+.... +.. . . ...+...++.+.+++++ +.+.++|++||++++..+++.. ..+++
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~-g~~~~~~~~g~t~a~~~al~~l--~~~gd 103 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL-GMDEARVTHGAREGKFAVMHSL--CKKGD 103 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh--cCCCC
Confidence 45677889999999987743 110 1 1 12345788888898888 5678999999999999999842 23455
Q ss_pred eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC----CCCeEEEEEcccCCC
Q 011856 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGN 258 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep~~~~ 258 (476)
+|++...+ |......+...|..+...+.....+. ..|++++++.++++ .+++++|+++.++++
T Consensus 104 ~Vlv~~~~-h~s~~~~~~~~G~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 104 YVVLDGLA-HYTSYVAAERAGLNVREVPKTGYPEY------------KITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred EEEECCCc-hHHHHHHHHHcCCEEEEEeCccCcCC------------CcCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 56665444 43333334444443332221000000 12799999998743 236788888888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
+|.+.+ +++|.++|++||+++|+|++|+ |. . ......+|+.-.+.+++|+++++.++|++++++++++.+..
T Consensus 171 tG~~~~----l~~I~~la~~~g~~livD~a~~~g~-~--~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~ 243 (387)
T PRK09331 171 YGNLAD----AKKVAKVAHEYGIPFLLNGAYTVGR-M--PVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFR 243 (387)
T ss_pred Cccccc----HHHHHHHHHHcCCEEEEECCcccCC-c--CCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhccc
Confidence 999988 9999999999999999999995 21 0 11112234433344788999977789999999999888754
Q ss_pred CCCcc-------ccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH-hhhcCCceEeeeeceeEEEEE
Q 011856 338 AGPMY-------QAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA-GKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 338 ~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~v~~~g~~~~i~~ 408 (476)
..+.+ .+++ .++....+++++++.+.+ .+..++..++.+++++.|.++ +.+. ..+-.....++.++.
T Consensus 244 ~~~~~~~~~~~~~~~~--~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~--~~~~~~~~~i~~~~~ 319 (387)
T PRK09331 244 TSRKFGVKEVELLGCT--LRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQ--LGEKPRNHDLMKFET 319 (387)
T ss_pred ccCCCcccceeeecee--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE--eccCcCcCCeEEEeC
Confidence 32211 1112 223344455556655433 234455566777777777765 2111 100011233333332
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEE-eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT-SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~-~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.. . ............++.+.|.++||...+.+. ..+++ +..+|++|+++++++|++++++.
T Consensus 320 ~~--~---~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 320 PS--F---DEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred Cc--h---hHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 10 0 000000111235688899999998543333 33444 45789999999999999987753
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-20 Score=183.22 Aligned_cols=328 Identities=15% Similarity=0.151 Sum_probs=205.0
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CC-CCCC------CHHHHHHHHHHHhhCC--CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TS-FGAP------CLLENVLAEMVISAVP--SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~-~~~~------~~~~~~la~~l~~~~~--~~e~v~~~~sGse 166 (476)
+..|+|..+. |..++.+.+++.+.+... .. .+.+ .+...++.+.++++++ ..++|+|++|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 3467775543 446789999998887542 11 1111 1334567788888876 2578999999999
Q ss_pred HHHHHHHHHH--hccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh
Q 011856 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (476)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 241 (476)
++..++.... ...++++|++.++.|++..... ....|..+...+... .+ ..|++++++.++
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~~~~~l~~~i~ 155 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA-DL-------------LPDIRQLPELLT 155 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CcCHHHHHHHhc
Confidence 9999988431 1245678888888877643222 222343332211110 00 017899999886
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCC
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGG 319 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G 319 (476)
+ ++++|++..+++++|.+.+ +++|.++|++||+++|+|++|.-... ..+.....+|+.++| |.+|.
T Consensus 156 ~---~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~~d~~~~s~~K~~gp- 223 (398)
T TIGR03392 156 P---RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALDIDFYAFSGHKLYGP- 223 (398)
T ss_pred c---CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcCCCEEEEecccccCC-
Confidence 4 5778888888888999988 99999999999999999999952211 111112346887777 97763
Q ss_pred CcEEEEEecHHHHHhhcCCC---Cc---------------cccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHH
Q 011856 320 LPVGAYGGRRDIMEMVAPAG---PM---------------YQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITG 378 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~---~~---------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~ 378 (476)
..+|++++++++++.+.+.. .. ..+-.-+.|..+..+..++++.+.+. +..++.+++.+
T Consensus 224 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~ 303 (398)
T TIGR03392 224 TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLAD 303 (398)
T ss_pred CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 23899999999887765310 00 00001133555677777778776542 34455555555
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------------C
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------F 446 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~ 446 (476)
++++.|.++. ++.........++.+.+... ...++.+.|.++||.++.+. .
T Consensus 304 ~l~~~l~~l~---g~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~ 366 (398)
T TIGR03392 304 LAEERLAQLP---GFRSFRCPGSSLLAFDFAGV--------------HHSDLAALLAESGIALRAGQHCAQPLMAALGVS 366 (398)
T ss_pred HHHHHHhcCC---CeEEeCCCCCcEEEEEeCCc--------------CHHHHHHHHHhCCEEEecCccchHHHHHHhCCC
Confidence 5555555431 11111112234555544210 12467778889999998653 2
Q ss_pred cceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++ ..+|++|+++++++|+++++.+
T Consensus 367 ~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 367 GTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred CEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 357774 5679999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=188.59 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=190.1
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
...+|+..|. +++|. ++.+ .+... ..|+.....+|.+.++++++ .+++|++++|+++++..+++..
T Consensus 31 ~~~~~l~~ne--~~~~~-~~~~------~~~~~--~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~-- 97 (354)
T PRK04635 31 RGDIWINANE--SPFNN-EYKL------DLARL--NRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAF-- 97 (354)
T ss_pred CCcEEeeCCC--CCCCC-Chhh------hhHHh--ccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHh--
Confidence 4457777775 55553 2322 11121 22344345778888888776 6889999999999999999842
Q ss_pred ccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 178 FTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 178 ~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
...+ +.|++.+++|..+.. .....|..+...+...... -|++.++. + +++++|+++..+
T Consensus 98 ~~~g~d~vlv~~P~y~~y~~-~~~~~g~~v~~v~~~~~~~--------------~~~~~l~~-~----~~~~li~i~nP~ 157 (354)
T PRK04635 98 CEPGQDSIACFGPTYGMYAI-SAETFNVGVKALPLTADYQ--------------LPLDYIEQ-L----DGAKLVFICNPN 157 (354)
T ss_pred cCCCCCeEEEcCCChHHHHH-HHHHcCCEEEEEecCCCCC--------------CCHHHHHh-c----cCCCEEEEeCCC
Confidence 2233 678888888866432 2333444333322211001 15677753 2 256666666667
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
|++|.+.+.++ +++|.+.|+ +++||+||+|..|..... ........++++ +|||.++ +|+|+||++++++++
T Consensus 158 NPTG~~~~~~~-l~~l~~~~~--~~~vivDeay~~~~~~~s-~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~ 233 (354)
T PRK04635 158 NPTGTVIDRAD-IEQLIEMTP--DAIVVVDEAYIEFCPEYS-VADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELI 233 (354)
T ss_pred CCCCccCCHHH-HHHHHHhCC--CcEEEEeCchHhhccCcc-hHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHH
Confidence 77888887333 555555444 599999999987732111 111111223433 7999999 899999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+.+... ...++.+.+.+.++.++|+.. +. .+..++++++++++.+.|+++ +.....++.|.++++.+.
T Consensus 234 ~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~g~f~~~~~~ 304 (354)
T PRK04635 234 EILMRV-----IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY----GGAKVLEGNGNYVLAKFD 304 (354)
T ss_pred HHHHhh-----cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceECCCCCcEEEEECC
Confidence 887631 124566777777777777421 10 222334445555555555543 312223456777777653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
+ ..++.+.|.++||.++... .+.+|+++. +++|+++++++|++-
T Consensus 305 ~----------------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~~ 352 (354)
T PRK04635 305 D----------------VDAVFKALWDAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRNQ 352 (354)
T ss_pred C----------------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 1 1467788889999997653 245788865 789999999998753
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=184.31 Aligned_cols=321 Identities=20% Similarity=0.244 Sum_probs=219.7
Q ss_pred EEecccChhhccCCC--CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGH--ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
.|++.+- |+||. ++-...+++.+.+++ +... -+..+.+.++.+.++++. +.+..++.+-|..+|...
T Consensus 138 ~lNlgSY---NYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~-g~e~a~vF~mGf~TNs~~ 213 (519)
T KOG1357|consen 138 CLNLGSY---NYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFL-GVEDAIVFSMGFATNSMN 213 (519)
T ss_pred eeeeccc---ccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhc-CCcceEEEeccccccccC
Confidence 4565554 88887 344445555555555 2111 135677888999898888 566666666678888777
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc---------
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN--------- 242 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--------- 242 (476)
+. .+-++...|+.+.-.|++....+ +..++.+..+.|||+++||++|++
T Consensus 214 ~p---~l~~~gsLIiSDelNHaSi~~Ga-------------------RLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~T 271 (519)
T KOG1357|consen 214 IP---SLLGKGSLIISDELNHASLITGA-------------------RLSGATTRVFRHNDMQGLERLLRDAIVYGQPKT 271 (519)
T ss_pred cc---eeecCCcceeeccccchheeccc-------------------cccCceEEEEecCCHHHHHHHHHHHHhcCCCCc
Confidence 77 56678888888888998654333 233446888999999999999975
Q ss_pred C-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCC---chh--hhhh
Q 011856 243 N-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP---DLT--TLGK 314 (476)
Q Consensus 243 ~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~p---Di~--t~sK 314 (476)
+ +.+...|++|.++++.|.+.. |.++.++++||.++|+.||+| .|. ..+..+..+++++.| ||+ ||.|
T Consensus 272 hrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftK 347 (519)
T KOG1357|consen 272 HRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTK 347 (519)
T ss_pred CCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehh
Confidence 2 234567888999999999999 888999999999999999999 455 455567888999876 443 7999
Q ss_pred hcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHH
Q 011856 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 315 ~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+++++ .|++.+++++++.++.........+ +.+|+.++-.+..++.+.. ....+++.++..+++..|+..
T Consensus 348 Sfga~--GGyiagsk~lid~lrt~s~~~~yat-~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~ 424 (519)
T KOG1357|consen 348 SFGAA--GGYIAGSKELIDYLRTPSPSALYAT-SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM 424 (519)
T ss_pred hcccc--cceecCcHHHHhhhccCCCceeecc-cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence 99862 6778899999999875333333334 3455555666777777653 345677888888888887765
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc---------eEEeCCCcHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------GFTSLAHSSD 458 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---------~~~~~~~t~e 458 (476)
+. +..-......+.+-+. .......+.+.|+++++-+...+++. ++++..||.|
T Consensus 425 gf----ivyG~~dSpVvplll~-------------~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e 487 (519)
T KOG1357|consen 425 GF----IVYGNNDSPVVPLLLY-------------GPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKE 487 (519)
T ss_pred cE----EEecCCCCCcceeeec-------------CcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHH
Confidence 32 1100011111111111 11122567889999877665555443 3457899999
Q ss_pred HHHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKVK 471 (476)
Q Consensus 459 ~i~~~~~~l~~~~ 471 (476)
++|++++.++++-
T Consensus 488 ~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 488 DLDRALEVIDRVG 500 (519)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=169.72 Aligned_cols=321 Identities=15% Similarity=0.137 Sum_probs=203.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
..++..+|+.+++..+...+| | ...+.+.|+.+.+..+ .+++|++|+|+++|++.++.. ....+.+|++.
T Consensus 79 ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~--LA~p~aNILlP 156 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISS--LANPGANILLP 156 (447)
T ss_pred CCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHH--hcCCCCceecC
Confidence 467899999999988754443 2 3456677777666555 579999999999999999985 23567889998
Q ss_pred eCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
.++|.- ++......+..+..+.+ |... ..+ |++.+|.++.++ ..+.||++|.|+.|++ .++
T Consensus 157 rPGfp~-Y~~~a~~~~lEVR~ydlLPe~~----------weI---DL~~veal~DEN--T~AivviNP~NPcGnV--ys~ 218 (447)
T KOG0259|consen 157 RPGFPL-YDTRAIYSGLEVRYYDLLPEKD----------WEI---DLDGVEALADEN--TVAIVVINPNNPCGNV--YSE 218 (447)
T ss_pred CCCCch-HHHhhhhcCceeEeecccCccc----------cee---chHHHHHhhccC--eeEEEEeCCCCCCccc--ccH
Confidence 888754 33333333444433222 2111 111 899999999864 6677777887766543 356
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhcc-CCCCchh--hhhhhcC-CCCcEEEEEecHH--------HH
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-GVTPDLT--TLGKIIG-GGLPVGAYGGRRD--------IM 332 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-g~~pDi~--t~sK~lg-~G~~iG~~~~~~~--------i~ 332 (476)
+-|++|.++|+|+|+++|.||||..+ ..+..| ....| .+.|-++ .+||.+- .|||+||++.++. ++
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~ 298 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVV 298 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHH
Confidence 66999999999999999999999776 444332 22223 3455443 4789876 8999999976542 12
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEE-
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF- 406 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i- 406 (476)
+.+.+ +.. -+.+.+.+.|+|.-.-|+.-. +++. .-++.+.+...++|++ .|... .++..|.|+.+
T Consensus 299 q~~~~---~~~-~~~~p~TiiQ~AlP~IL~kTp-~efF~k~~~~lk~na~l~y~~Lk~----IP~l~cp~kPeg~mylmv 369 (447)
T KOG0259|consen 299 QGIKN---FLD-IIPGPATIIQGALPDILEKTP-EEFFDKKLSFLKSNADLCYSRLKD----IPCLTCPVKPEGCMYLMV 369 (447)
T ss_pred HHHHH---HHh-ccCCccHhHHHHhHHHHHhCh-HHHHHHHHHHHHhhHHHHHHHHhc----CCCcccCcCCCcceEEEe
Confidence 22221 111 233444555554444443211 3333 3344444545555554 44333 56677776544
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.-. .+ ++-..-..|++.|. |+.+++-|+. .+.+|+++....+.+++++++|++++.+
T Consensus 370 ~l~~s---~~-----~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~R 433 (447)
T KOG0259|consen 370 KLNLS---LF-----PDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDR 433 (447)
T ss_pred ccchh---hh-----ccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHh
Confidence 33211 11 11122246666665 7789998874 4567899999999999999999998865
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=195.75 Aligned_cols=337 Identities=16% Similarity=0.121 Sum_probs=187.7
Q ss_pred cCCCC-cHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhh-C-C---C--CCeEEEeCCHHHHHHHHHHHHH---h
Q 011856 112 IIGHA-DDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISA-V-P---S--IEMVRFVNSGTEACMGVLRLAR---A 177 (476)
Q Consensus 112 ~lG~~-~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~-~-~---~--~e~v~~~~sGseA~~~al~~ar---~ 177 (476)
..+.. ++.|.+ +.+.+. +..|.. ..++++++++.+.+. . . . .++|++|+|+++|+..++.... .
T Consensus 109 ~p~~~~~~~v~e-~~~~~~-~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~l 186 (527)
T PRK09275 109 QLGFDADEFVYE-LVDGII-GDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGL 186 (527)
T ss_pred CCCCCCCHHHHH-HHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhc
Confidence 34554 445556 555553 333332 236667777644432 1 1 1 3489999999999999988421 2
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..+++.|++.+++|..+... ....+.+.....++. ..++ . -|+++|+++++. ++++|+++..
T Consensus 187 l~pGD~Vlv~~P~y~~Y~~~-~~l~g~~~~~v~v~~~~~~~f-----------~-~d~~~l~~~~~~---~tkai~l~nP 250 (527)
T PRK09275 187 LKAGDKIALMTPIFTPYLEI-PELPRYDLEVVHINADEENEW-----------Q-YPDSELEKLRDP---SIKALFLVNP 250 (527)
T ss_pred CCCCCEEEEeCCChHHHHHH-HHHcCCCeEEEEeecCcccCC-----------C-CCHHHHHhhcCC---CCCEEEEeCC
Confidence 45678899999999875433 233332222111111 0111 0 168888887653 5666665444
Q ss_pred CCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCccccccchhhccCCCCc----hhhhhhhcC-CCCcEEEEEec
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGGR 328 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r~g~~~~~~~~g~~pD----i~t~sK~lg-~G~~iG~~~~~ 328 (476)
+|++|.+.+.+ .+++|.++|++ +|++||+||+|..|....... ....|+ +.+|||.++ +|||+||++++
T Consensus 251 ~NPTG~v~s~e-~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~---~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~ 326 (527)
T PRK09275 251 SNPPSVAMSDE-SLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSL---FAVLPYNTILVYSFSKYFGATGWRLGVIALH 326 (527)
T ss_pred cCCcCCCCCHH-HHHHHHHHHHhcCCCcEEEECCCChhhcccccCH---HHhCCCCEEEEeehhhhccCcHhHHhhhhcC
Confidence 56677777644 49999999965 499999999998772111111 111232 237999998 89999999998
Q ss_pred HH-----HHHhh-----------------------------cCCCCccccCCCCCcHHHHHH-HHHHH-HHhcC-CCHHH
Q 011856 329 RD-----IMEMV-----------------------------APAGPMYQAGTLSGNPLAMTA-GIHTL-KRLKE-PGTYE 371 (476)
Q Consensus 329 ~~-----i~~~l-----------------------------~~~~~~~~~~t~~~~~~~~aa-a~aal-~~~~~-~~~~~ 371 (476)
++ +++.+ ..........|.+.+.+.|.+ ++.++ ..++. +++.
T Consensus 327 ~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~- 405 (527)
T PRK09275 327 EDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYK- 405 (527)
T ss_pred chhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHH-
Confidence 76 33322 000122233456667666665 32111 11222 2222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCce--EeeeeceeEEEEEecCC----CcCchhhcccchHHHHHHHHHHH-HCCeEeccC
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARFYRGML-EEGVYFAPS 444 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~ 444 (476)
+++.+.++++...+....+... ..+..+.++++++.... ...+...... .....+|+..|+ +.||.+.|+
T Consensus 406 --~~~~~~~~~Rr~~l~~~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~-~~~~~~f~~~Ll~e~gV~v~PG 482 (527)
T PRK09275 406 --KAMKDIIRRRYKALYEGLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKK-NYSPVDLLFRLAEETGVVLLPG 482 (527)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhc-cCCHHHHHHHHHhcCCEEEeCc
Confidence 2233333333322222223221 22344556666653210 0011110000 011256666666 569999887
Q ss_pred C-----CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 445 Q-----FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 445 ~-----~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
. .+++|++++ .+++++.++.++|.+++++.
T Consensus 483 ~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y 518 (527)
T PRK09275 483 GGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEY 518 (527)
T ss_pred hhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 3 235899988 58899999999999998764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-20 Score=183.83 Aligned_cols=328 Identities=15% Similarity=0.156 Sum_probs=206.0
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CC------CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP--SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~------~~~~~~~la~~l~~~~~--~~e~v~~~~sGse 166 (476)
+..|+|-.+. |..++.+.+++.+.++..... +. ..+...++.+.++++++ ..++|+|++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 3467775543 446789999998888652111 11 12345677788888886 3678999999999
Q ss_pred HHHHHHHHHH--hccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh
Q 011856 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (476)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 241 (476)
++..+++... ...++++|++.+..|++...... ...|..+...+... .+ ..|++++++.++
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~i~ 158 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DR-------------LPDVDLLPELIT 158 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CC-------------cCCHHHHHHhcC
Confidence 9999988531 12456788888888776432222 22343332221111 00 117899999886
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhh--hhhhcCC
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIGG 318 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t--~sK~lg~ 318 (476)
. ++++|++..+++.+|.+.| +++|.++|+++|+++|+|++|. |... .+.....+|+++ ++|.+|.
T Consensus 159 ~---~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~~gp 226 (401)
T PRK10874 159 P---RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQGAVHFP-----ADVQALDIDFYAFSGHKLYGP 226 (401)
T ss_pred c---CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCccccccc-----CCchhcCCCEEEEecccccCC
Confidence 3 5778888888888999988 9999999999999999999995 2111 111122467664 5597762
Q ss_pred CCcEEEEEecHHHHHhhcCCC---Cc---------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 011856 319 GLPVGAYGGRRDIMEMVAPAG---PM---------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 377 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~---~~---------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 377 (476)
-.+|++++++++++.+.+.. .. ..+...+.|..++.+..++++.+.+ ....++.+++.
T Consensus 227 -~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~ 305 (401)
T PRK10874 227 -TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLA 305 (401)
T ss_pred -CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 12699999999888765310 00 0000113455667777777776654 23455555666
Q ss_pred HHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------------
Q 011856 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------ 445 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------ 445 (476)
+++++.|+++. ++.......+.++.+.+... ...++.+.|.++||.++++.
T Consensus 306 ~~l~~~l~~~~---g~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~ 368 (401)
T PRK10874 306 TLAEDALAKLP---GFRSFRCQDSSLLAFDFAGV--------------HHSDLVTLLAEYGIALRAGQHCAQPLLAALGV 368 (401)
T ss_pred HHHHHHHhcCC---CEEEeCCCCCcEEEEEECCc--------------CHHHHHHHHHHCCcEEeccccchHHHHHHhCC
Confidence 66666665431 22111112344555554210 12467788889999988753
Q ss_pred CcceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 446 FEAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
...+|++ ..+|++|+|+++++|+++++.+.
T Consensus 369 ~~~iRiS~~~~nt~edid~ll~al~~~~~~~~ 400 (401)
T PRK10874 369 TGTLRASFAPYNTQSDVDALVNAVDRALELLV 400 (401)
T ss_pred CCEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 2346775 45699999999999999887653
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=185.42 Aligned_cols=303 Identities=13% Similarity=0.086 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHhhCC--C---CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 138 CLLENVLAEMVISAVP--S---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~--~---~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
.+++..+++.+.+..+ . .+++++|+|+++++..+++.. ...++.|++.+++|...........|..+...+..
T Consensus 47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~ 124 (388)
T PRK08637 47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF--VDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIF 124 (388)
T ss_pred HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHhcCCEEEEeccc
Confidence 4556666666654432 2 257899999999999998842 23557788888888775543333455544433321
Q ss_pred -CCCCCCCCCCCceeeccCCCHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEEE
Q 011856 213 -DSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIF 285 (476)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI~ 285 (476)
...++ |++++++.++. ..+...++++...+|++|.+.+..+ +++|.++|++ |+++||+
T Consensus 125 ~~~~~~--------------d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~~~~~~iI~ 189 (388)
T PRK08637 125 DEDGGF--------------DTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKE-ATAIVEAIKELADAGTKVVAVV 189 (388)
T ss_pred CCCCcC--------------CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHHHhcCCcEEEEe
Confidence 11122 78999988862 1123444555544666787766555 9999998886 9999999
Q ss_pred eccccCc-cccccc-h-h-hccCCCCch--h---hhhhhcC-CCCcEEEEEec------HHHHHhhcCCCC-ccccCCCC
Q 011856 286 DEVMTGF-RLAYGG-A-Q-EYFGVTPDL--T---TLGKIIG-GGLPVGAYGGR------RDIMEMVAPAGP-MYQAGTLS 348 (476)
Q Consensus 286 DEv~~g~-r~g~~~-~-~-~~~g~~pDi--~---t~sK~lg-~G~~iG~~~~~------~~i~~~l~~~~~-~~~~~t~~ 348 (476)
||+|.+| ..+... . . ...+...++ + ++||.++ +|+|+||++.+ +++++.+..... ......++
T Consensus 190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (388)
T PRK08637 190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISN 269 (388)
T ss_pred cccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCC
Confidence 9999888 544321 1 1 111222342 2 6999877 79999999743 677776642100 01112346
Q ss_pred CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHHhhhcC----CceEeeeeceeEEEEEecCCCcCchhhcc
Q 011856 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI---IDAGKKAG----HAICGGYISGMFGFFFTEGPVYNFEDAKK 421 (476)
Q Consensus 349 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~~----~~~~v~~~g~~~~i~~~~~~~~~~~~~~~ 421 (476)
.|.+++.++.+.|+ ++.+.++++++...++++. .+....++ +....+..|.++++.+..
T Consensus 270 ~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~----------- 335 (388)
T PRK08637 270 GPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG----------- 335 (388)
T ss_pred CCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-----------
Confidence 78888888887774 3344445544444443332 22222221 222223456677777631
Q ss_pred cchHHHHHHHHHHH-HCCeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 422 SETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 422 ~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
....++.+.|+ ++||.+.+.+...+|+++. .+++++++++++|.++++.+
T Consensus 336 ---~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 336 ---VDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ---HHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 12357888886 5799887665567888765 58999999999999998754
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=178.75 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=198.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.+|.+.+++........ ....+...++.+.+++++. .. ..++++.||+++++.++... ..+++++++..++++
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~--~~~~~~vi~~~~~~~ 85 (355)
T TIGR03301 10 TSATVRDAMLVDWCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL--VPRDGKLLVLINGAY 85 (355)
T ss_pred CCHHHHHHhhhhccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc--cCCCCeEEEECCCch
Confidence 35677777665222110 0113667788888888875 22 26788999999999999852 345677888877777
Q ss_pred CCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+.. .......|..+...+.+... ..|++++++.+++++ +++.+++..+++.+|.+.+ +++
T Consensus 86 ~~~~~~~a~~~g~~~~~i~~~~~~--------------~~d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~----~~~ 146 (355)
T TIGR03301 86 GERLAKICEYLGIPHTDLNFSEYE--------------PPDLNRIEEALAADP-DITHVATVHHETTTGILNP----LEA 146 (355)
T ss_pred hhHHHHHHHHcCCceEEEecCCCC--------------CCCHHHHHHHHHhCC-CceEEEEEecCCcccchhH----HHH
Confidence 753 22233334433222111111 127999999997642 4555555555566788888 899
Q ss_pred HHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc---------
Q 011856 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--------- 342 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~--------- 342 (476)
|.++|++||+++|+|++++ +. +..+....+++..-+.+++|+++++..+|++++++++++.+......+
T Consensus 147 i~~l~~~~~~~livD~~~s-~g-~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSS-FG-AIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred HHHHHHHcCCEEEEEeccc-cC-CcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 9999999999999999885 31 011222223332223478999875545899999999988875211110
Q ss_pred -----ccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 343 -----QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 343 -----~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
....++.+...+.++.++++.+.+ ++..++++++.+++++.|+++..+.. .......+.++++.+...+
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~- 302 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPL-LPERWQSPIIVSFLYPDDP- 302 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeee-cCCCCCCCcEEEEECCCCC-
Confidence 012345677777888888887644 33556677777888888776421110 0011123445555553210
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEeccCCC---cceEEeC--CCcHHHHHHHHHHHHHH
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKV 470 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~~--~~t~e~i~~~~~~l~~~ 470 (476)
.....++.+.|.++||.+.++.. +.+|++. .++++|++++++.|+++
T Consensus 303 ----------~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 303 ----------DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ----------cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 01235788899999999988742 4678854 45999999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=182.25 Aligned_cols=333 Identities=13% Similarity=0.054 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH
Q 011856 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198 (476)
Q Consensus 119 ~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~ 198 (476)
.+.+++.+++..+...+.+.....+|.+.+++++ +.+.+++++||++|+..+++. +.++++||..++.|.. +...
T Consensus 58 a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~-~~~~vv~t~ggt~A~~~~~~a---ll~pGDVii~~p~~~~-~~~~ 132 (460)
T PRK13238 58 AMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIF-GYPYTIPTHQGRAAEQILFPV---LIKKGDVVPSNYHFDT-TRAH 132 (460)
T ss_pred hhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHh-CCCcEEECCCHHHHHHHHHHH---hCCCCCEEccCCcccc-hHHH
Confidence 5788888888765433334445567777777777 667899999999999999873 4444447766665554 3344
Q ss_pred HhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCC-CCeEEEEEcccCCCCC-cccCCHHHHHHHHHH
Q 011856 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GEIAAIILEPVVGNSG-FIAPKPDFLNAIRRI 275 (476)
Q Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G-~i~~~~~~l~~l~~l 275 (476)
+...|..+...+....... . . ...+.. -|+++|++.+++++ +++++|+++..+|++| .+.+ .+.+++|+++
T Consensus 133 i~~~G~~~v~v~~~~~~~~-~--~--~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s-~~~l~~I~~i 206 (460)
T PRK13238 133 IELNGATAVDLVIDEALDT-G--S--RHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVS-MANLRAVYEI 206 (460)
T ss_pred HHHcCCEEEEEeccccccc-c--c--cccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCC-HHHHHHHHHH
Confidence 4445544332222110000 0 0 000010 28999999997543 4688888887766655 5554 5569999999
Q ss_pred HHHhCCEEEEeccccC--c-cc-----cccchhhccCCCCchhhhhhhcC-CCCc-----EEEE-Eec-HHHHHhhcCCC
Q 011856 276 TKENGALLIFDEVMTG--F-RL-----AYGGAQEYFGVTPDLTTLGKIIG-GGLP-----VGAY-GGR-RDIMEMVAPAG 339 (476)
Q Consensus 276 ~~~~g~llI~DEv~~g--~-r~-----g~~~~~~~~g~~pDi~t~sK~lg-~G~~-----iG~~-~~~-~~i~~~l~~~~ 339 (476)
|++||++||+|++|.. . .. +.... ...++...+.+++|.+. +|++ .|++ +++ +++++.++...
T Consensus 207 a~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~-si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~ 285 (460)
T PRK13238 207 AKKYGIPVVIDAARFAENAYFIKQREPGYKDK-SIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLC 285 (460)
T ss_pred HHHcCCEEEEECcchhhhhhhhhhccccccCC-CHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcc
Confidence 9999999999998842 1 11 10000 00001111123444443 2333 3444 556 57888776432
Q ss_pred Cccc-cCCCCCcHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCch
Q 011856 340 PMYQ-AGTLSGNPLAM-TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 340 ~~~~-~~t~~~~~~~~-aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
...+ +.|+++.+..+ +|...+|+...++++.+...++.++|.+.|++. +++...+..|.++.+++..- .
T Consensus 286 ~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~p~Gg~~v~~d~~~~-----~ 356 (460)
T PRK13238 286 ILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA----GVPIQTPAGGHAVFVDAGKF-----L 356 (460)
T ss_pred cccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC----CCCeEccCCceEEEEEchhc-----C
Confidence 2222 34788866664 444445654434566666666678888888774 44433445566666655321 0
Q ss_pred hhcccchHHHHHHHHHHH-HCCeEeccCC-----------------CcceEEeCCC---cHHHHHHHHHHHHHHHH
Q 011856 418 DAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAH---SSDDIQHTITAAEKVKM 472 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------------~~~~~~~~~~---t~e~i~~~~~~l~~~~~ 472 (476)
...........+++..|+ +.||.+.|.+ ...+|+.+.- |++++|.+.++|+++.+
T Consensus 357 ~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 357 PHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred CCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 000001111245665555 6799887753 1345776555 99999999999998764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=191.97 Aligned_cols=343 Identities=13% Similarity=0.100 Sum_probs=185.2
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHH-HHHhhCC----CCC--eEEEeCCHHHHHHHHHHHHH---hc
Q 011856 112 IIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAE-MVISAVP----SIE--MVRFVNSGTEACMGVLRLAR---AF 178 (476)
Q Consensus 112 ~lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~-~l~~~~~----~~e--~v~~~~sGseA~~~al~~ar---~~ 178 (476)
..+..+|++++++.+.+. +..|..+ .++.+++++ .+.+.+. ..+ +|++++|+++|+..++.... ..
T Consensus 103 ~p~~~~~~~~~~~~~~~~-~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll 181 (521)
T TIGR03801 103 QLGFDPDAFLYEMCDGII-GDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL 181 (521)
T ss_pred CCCCCCCHHHHHHHHHhh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC
Confidence 445566677777777653 3233222 244445553 4444321 233 89999999999999887421 23
Q ss_pred cCCceEEEEeCCCCCCchhHHhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
.++++|++.+++|..+... .... +..+..++.....+ .....+.+ |.++++++++. ++++|+++..+
T Consensus 182 ~pGD~Vlv~~P~y~~y~~~-~~l~~~g~~vv~i~~~~~~~------~g~~~~~~-d~~~l~~~~~~---~~kai~l~nP~ 250 (521)
T TIGR03801 182 KKGDKIALMTPIFTPYLEI-PELPRYDFEVVRIKADEMTE------DGTHTWQY-PDKELEKLRDP---SIKALFVVNPS 250 (521)
T ss_pred CCCCEEEEeCCCcHHHHHH-HHHhcCCcEEEEeecccccc------cccccCCC-CHHHHHHhcCC---CCcEEEEeCCC
Confidence 4678899999998774433 2233 22222211110000 00000111 67888877642 56666544445
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCccccccchhhccCCCCc----hhhhhhhcC-CCCcEEEEEecH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGGRR 329 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~pD----i~t~sK~lg-~G~~iG~~~~~~ 329 (476)
|++|.+.+.++ +++|.++|++| |++||+||+|..|...... .....|+ +.+|||.++ +|||+||+++++
T Consensus 251 NPTG~vls~e~-l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s---l~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 251 NPPSVAMSDES-IEKIVDIVANDRPDLMILTDDVYGTFVDDFRS---LFAELPYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCeEEEECCCchhhcccccc---hhhhCCCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 66777776555 99999999987 9999999999877211111 1112233 237999998 899999999876
Q ss_pred H-----HH--------HhhcC---------------------CCCccccCCCCCcHHHHH--HHHHHHHHhcC-CCHHHH
Q 011856 330 D-----IM--------EMVAP---------------------AGPMYQAGTLSGNPLAMT--AGIHTLKRLKE-PGTYEY 372 (476)
Q Consensus 330 ~-----i~--------~~l~~---------------------~~~~~~~~t~~~~~~~~a--aa~aal~~~~~-~~~~~~ 372 (476)
+ ++ +.+.+ ........|.+.+.+.+. +..++...++. +.+.+.
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~ 406 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAE 406 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHH
Confidence 4 22 11110 001112234455555544 21122222222 233332
Q ss_pred HHHHHHHHHHHHHHHhhhcCCce--EeeeeceeEEEEEecCCC----cCchhhcccchHHHHHHHHHHH-HCCeEeccCC
Q 011856 373 LNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPV----YNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ 445 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~ 445 (476)
.+ +.++++...+....++.. ..+..|.++++++..... ..|........ ...+++..|+ +.||.+.|+.
T Consensus 407 ~~---~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~-~~~~~~~~L~~e~gV~v~PG~ 482 (521)
T TIGR03801 407 TK---DICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNY-SPVDVLFRLAEETGIVLLPGG 482 (521)
T ss_pred HH---HHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccC-CHHHHHHHHHHhCCEEEeCch
Confidence 22 333333322222223221 123455666776642100 01111100000 1245666666 5699999873
Q ss_pred -----CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 446 -----FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 -----~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.+|++++ .+++++.++.++|.+++++.
T Consensus 483 ~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~ 517 (521)
T TIGR03801 483 GFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEY 517 (521)
T ss_pred hcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 235889887 69999999999999998764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=178.14 Aligned_cols=312 Identities=16% Similarity=0.157 Sum_probs=195.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~--~~~~~~la~~l~~~~~~-~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
.++.+.+++.+.+. .+.++ .+...++.+.++++++. . +.+++++||++|+..+++.. ...++.|++.+.++
T Consensus 10 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~--~~~g~~vl~~~~~~ 84 (356)
T cd06451 10 VPPRVLKAMNRPML---GHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL--LEPGDKVLVGVNGV 84 (356)
T ss_pred CCHHHHHHhCCCcc---CCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh--CCCCCEEEEecCCc
Confidence 36777777754332 12222 34466888889988862 3 45789999999999999842 34567777777666
Q ss_pred CCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
++. ....+...|..+...+.... ...|++++++.++++ ++++|++..+++++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~~--------------~~~~~~~l~~~i~~~--~~~~v~i~~~~~~~G~~~~----~~ 144 (356)
T cd06451 85 FGDRWADMAERYGADVDVVEKPWG--------------EAVSPEEIAEALEQH--DIKAVTLTHNETSTGVLNP----LE 144 (356)
T ss_pred hhHHHHHHHHHhCCCeEEeecCCC--------------CCCCHHHHHHHHhcc--CCCEEEEeccCCCcccccC----HH
Confidence 653 22233334443322111100 012799999999742 5667777666777899888 99
Q ss_pred HHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcC--CC-Ccc---
Q 011856 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP--AG-PMY--- 342 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~-~~~--- 342 (476)
+|.++|+++|+++|+|++|. +.. .......++ +|++ +++|.++++.++|+++.++++++.+.. .. ..+
T Consensus 145 ~i~~~a~~~~~~li~D~~~~-~g~-~~~~~~~~~--~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (356)
T cd06451 145 GIGALAKKHDALLIVDAVSS-LGG-EPFRMDEWG--VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDL 220 (356)
T ss_pred HHHHHHHhcCCEEEEeeehh-ccC-ccccccccC--ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecH
Confidence 99999999999999999984 200 011111223 4655 467999976678999999998877652 10 000
Q ss_pred -------c---cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEE
Q 011856 343 -------Q---AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFF 408 (476)
Q Consensus 343 -------~---~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~ 408 (476)
. +...+.++..+.++.++++.+.. +.+.++.+++.+++++.|++..... ...... .+.+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~ 298 (356)
T cd06451 221 LLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKL--LAKPELRSPTVTAVLV 298 (356)
T ss_pred HHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCee--ccCcccCCCceEEEEC
Confidence 0 11223456666777788877654 4566777788888888887653211 111111 122223332
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
.. .....++.+.|.++ ||.+.++. ...+|++ ..+|++|+++++++|++++
T Consensus 299 ~~-------------~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 299 PE-------------GVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred CC-------------CCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 11 11235788999998 99998753 2356775 4589999999999999876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=184.73 Aligned_cols=230 Identities=17% Similarity=0.134 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
.++++++++++.+..+ .+++|++|+|+++++..+++.. ....++.|++.+++|..+... +...|..+..+++...
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l-~~~pGd~Vli~~P~Y~~y~~~-~~~~g~~~v~v~~~~~ 187 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAV-IRGEKDGVLVPVPQYPLYSAT-ISLLGGTLVPYYLEES 187 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHH-cCCCCCEEEEeCCCCccHHHH-HHHcCCEEEEEecccc
Confidence 4677888888876543 5789999999999999998842 113567899999999886443 3444443333222111
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENN---KGEIAA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~-vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.++ .-|+++|++.+++. ..++++ ++++| +|++|.+.+.++ +++|.++|++||++||+||+|.
T Consensus 188 ~~~------------~~d~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v~s~e~-l~~l~~~a~~~~~~II~DE~Y~ 253 (407)
T PLN02368 188 ENW------------GLDVNNLRQSVAQARSKGITVRAMVIINP-GNPTGQCLSEAN-LREILKFCYQERLVLLGDEVYQ 253 (407)
T ss_pred cCC------------CCCHHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCccCCHHH-HHHHHHHHHHcCCEEEEEcccc
Confidence 110 01789999988631 114564 45556 667788776555 9999999999999999999998
Q ss_pred Cc-cccc-cc-h-hhcc-CC------CCchh---hhhhhc-C-CCCcEEEEE---ecHHHHHhhcCCCCccccCCCCCcH
Q 011856 291 GF-RLAY-GG-A-QEYF-GV------TPDLT---TLGKII-G-GGLPVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNP 351 (476)
Q Consensus 291 g~-r~g~-~~-~-~~~~-g~------~pDi~---t~sK~l-g-~G~~iG~~~---~~~~i~~~l~~~~~~~~~~t~~~~~ 351 (476)
.+ ..+. .+ . .+.. ++ .+.++ +|||++ + +|||+||++ +++++++.+... ...+++.|.
T Consensus 254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~----~~~~~~~~~ 329 (407)
T PLN02368 254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV----ASIALSPNV 329 (407)
T ss_pred ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH----hcccCCCCc
Confidence 87 4442 11 1 1111 11 12333 789998 5 899999998 488898887632 123567788
Q ss_pred HHHHHHHHHHHHhc-----------C-CCHHHHHHHHHHHHHHHHHHH
Q 011856 352 LAMTAGIHTLKRLK-----------E-PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 352 ~~~aaa~aal~~~~-----------~-~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+++.++.++|+.-+ + .++.+.++++.+.+.+.|+++
T Consensus 330 ~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~ 377 (407)
T PLN02368 330 SGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC 377 (407)
T ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999988885211 0 123455556666666666553
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-19 Score=176.61 Aligned_cols=315 Identities=16% Similarity=0.120 Sum_probs=196.1
Q ss_pred CCCcHHHHHHHHHHHHhc-CCCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh-ccCCce
Q 011856 114 GHADDQVLAALGETMKKG-TSFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-FTGRER 183 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~-~~~~-~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~-~~~~~~ 183 (476)
|..++.+.+++.+.++.. ...+ .+ ....+++.+.++++++ ..++|+|++|+++++..+++.... +.++++
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~ 89 (381)
T PRK02948 10 TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKK 89 (381)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCC
Confidence 456899999998888652 1111 11 2445677888888886 578999999999999999875432 223334
Q ss_pred EEEEeCCCCCCchhHH---hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 184 IIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
.|+.....|....... ...|..+...+... .+ ..|+++|++.+++ ++++|+++.+++++|
T Consensus 90 ~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~l~~---~~~lv~~~~~~n~tG 152 (381)
T PRK02948 90 HIITTPMEHASIHSYFQSLESQGYTVTEIPVDK-SG-------------LIRLVDLERAITP---DTVLASIQHANSEIG 152 (381)
T ss_pred EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC-CC-------------CCCHHHHHHhcCC---CCEEEEEECCcCCcE
Confidence 4555555555433322 22233222211110 01 1278999988863 567888888888999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecHHH-HHhh
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDI-MEMV 335 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~~i-~~~l 335 (476)
.+.| +++|.++|+++|+++|+|++|. | .. ......++ .|++ +++|.+| .| +|+++.++++ +..+
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~--~~~~~~~~--~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL--PIDVFEMG--IDSLSVSAHKIYGPKG--VGAVYINPQVRWKPV 221 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChhh-cccc--ccCcccCC--CCEEEecHHhcCCCCc--EEEEEEcCCCCCCCc
Confidence 9998 9999999999999999998884 3 11 11112223 4655 7889887 34 8888888765 1111
Q ss_pred cCCC-CccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-----eceeEEEE
Q 011856 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-----ISGMFGFF 407 (476)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-----~g~~~~i~ 407 (476)
.... ....+..++.|.++++++.++++.+.+ ++..++++++.+++++.|+++..+ ....+ ...++.+.
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~----v~~~~~~~~~~~~i~~~~ 297 (381)
T PRK02948 222 FPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLP----IEVEGHSTSCLPHIIGVT 297 (381)
T ss_pred ccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----EEEeCCCccCcCCEEEEE
Confidence 1000 000112345688888888899886533 556677777888888777765211 11111 11122222
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEEe--CCCcHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS--LAHSSDDIQH 462 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~~--~~~t~e~i~~ 462 (476)
+.. ....++...|.++||.++.+. ...+|++ ..+|++|+|+
T Consensus 298 ~~~--------------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~ 363 (381)
T PRK02948 298 IKG--------------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDT 363 (381)
T ss_pred eCC--------------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHH
Confidence 211 012456667788999998542 1346775 4579999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
+++.|+++++.+
T Consensus 364 l~~~l~~~~~~~ 375 (381)
T PRK02948 364 TIHALETIGNQF 375 (381)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=176.18 Aligned_cols=314 Identities=18% Similarity=0.140 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCC--CCC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-cCCce
Q 011856 114 GHADDQVLAALGETMKKGTSF--GAP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-TGRER 183 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~~~~--~~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-~~~~~ 183 (476)
+..++.|.+++.+.+.....+ ... .+...++.+.++++++ ..++++|++||++++..+++..... .+++.
T Consensus 9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~ 88 (379)
T TIGR03402 9 TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRH 88 (379)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCe
Confidence 345789999999887642111 111 2334577788888886 5678999999999999999865322 34455
Q ss_pred EEEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 184 IIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
|++....|++...... ...|..+...+... .+ .-|++++++.+++ ++++|+++.+++++|.
T Consensus 89 vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g-------------~~~~~~l~~~i~~---~~~lv~i~~~~n~tG~ 151 (379)
T TIGR03402 89 IITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE-EG-------------RLDLEELRAAITD---DTALVSVMWANNETGT 151 (379)
T ss_pred EEEcccccHHHHHHHHHHHHcCCEEEEEccCC-CC-------------cCCHHHHHHhcCC---CcEEEEEEcccCCeee
Confidence 5555555544322211 11233222211110 11 0278999998864 5778888888888999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCC
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAG 339 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~ 339 (476)
+.| +++|.++|++||+++|+|++|+ + |. ...+......|++++| | +.+...+|++..+++.. +.+..
T Consensus 152 ~~~----~~~I~~l~~~~g~~vivD~~~~-~--g~-~~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~--~~p~~ 220 (379)
T TIGR03402 152 IFP----IEEIGEIAKERGALFHTDAVQA-V--GK-IPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTR--FRPLL 220 (379)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECccc-c--cc-cccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCC--CCCcc
Confidence 999 8999999999999999999995 1 11 1112223456888777 9 54333488887776541 22110
Q ss_pred ------CccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEee---eeceeEEEE
Q 011856 340 ------PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGG---YISGMFGFF 407 (476)
Q Consensus 340 ------~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~---~~g~~~~i~ 407 (476)
..... .+.|..+..+..++++.+.+ ++..++.+++.+++++.|.+. .+.. .... .....+.+.
T Consensus 221 ~g~~~~~~~~~--gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR03402 221 RGGHQERGRRA--GTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLAR---IPDARLNGDPTKRLPNTVNIS 295 (379)
T ss_pred cCCccCCCcCC--CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---CCCEEEeCCCccCCCCEEEEE
Confidence 00112 23456666677777877654 334455666666666666541 2211 1000 111223333
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEEe--CCCcHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS--LAHSSDDIQH 462 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~~--~~~t~e~i~~ 462 (476)
+.. ++ ..++...|.++||.++.+. ...+|++ ..+|++|||+
T Consensus 296 ~~~-----------~~---~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~ 361 (379)
T TIGR03402 296 FEY-----------IE---GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDY 361 (379)
T ss_pred ecC-----------CC---HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHH
Confidence 321 11 2467778888999987642 1346775 5579999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
+++.|+++++++
T Consensus 362 ~~~~l~~~~~~~ 373 (379)
T TIGR03402 362 VLEVLPPIIARL 373 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-18 Score=171.80 Aligned_cols=319 Identities=14% Similarity=0.142 Sum_probs=192.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CC--CCC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF--GAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~--~~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~ 169 (476)
..|+|..+. |..++.+.+++.+.+.... .. .++ .+...++.+.++++++ ..+.+++++|+++++.
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 367775443 4468999999999886521 11 122 2345688888988886 3457999999999988
Q ss_pred HHHHHHHh-ccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 170 GVLRLARA-FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 170 ~al~~ar~-~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
.++..... ..++++|++.+..|++..... ....|..+...+.....+ ..|++++++.+++
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~~~~~l~~~i~~--- 155 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATG-------------ELHPDDLASLLSP--- 155 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCC-------------CcCHHHHHHhcCC---
Confidence 77764322 344567777776665543322 222343332211111001 0178999988863
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEE
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 323 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG 323 (476)
++++|+++.+++++|.+.+ +++|.++|++||+++|+||+|.. ... ..... ...+|++ +++|.+| .|+|
T Consensus 156 ~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~-~~~-~~~~~--~~~~d~~~~s~~K~~g--~~~G 225 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHYA-PHG-LIDVQ--ATGADFLTCSAYKFFG--PHMG 225 (397)
T ss_pred CceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhhc-ccc-CCCHH--HcCCCEEEEechhhcC--CceE
Confidence 5788888888888999988 99999999999999999999941 111 11111 2245765 6789884 5799
Q ss_pred EEEecHHHHHhhcCCCCccccC-------CCCCcHHHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHH
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKEPG-----------------TYEYLNKITGE 379 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~~~-----------------~~~~~~~~~~~ 379 (476)
++++++++++.+.+....+... .-+.+....++..++++.+.+.+ ..++..++.++
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999988776421111111 11234455555566666654311 12333344445
Q ss_pred HHHHHHHHhhhcC-CceE----eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------
Q 011856 380 LTQGIIDAGKKAG-HAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 445 (476)
Q Consensus 380 l~~~L~~~~~~~~-~~~~----v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------- 445 (476)
+++.|+++ + +... ....+.++.+.+.. ....++.+.|.++||+++.+.
T Consensus 306 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~ 367 (397)
T TIGR01976 306 LLVGLSDL----PGVTLYGVARLAARVPTVSFTVHG--------------LPPQRVVRRLADQGIDAWAGHFYAVRLLRR 367 (397)
T ss_pred HHHHHhcC----CCEEEeCCCCccCCCceEEEEeCC--------------cCHHHHHHHHHHCCeEEEeCccchHHHHHH
Confidence 55544432 2 1110 01134455444421 112468888999999998641
Q ss_pred ------CcceEEe--CCCcHHHHHHHHHHH
Q 011856 446 ------FEAGFTS--LAHSSDDIQHTITAA 467 (476)
Q Consensus 446 ------~~~~~~~--~~~t~e~i~~~~~~l 467 (476)
...+|++ ..+|++|+++++++|
T Consensus 368 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 368 LGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred hCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 1246664 578999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=170.93 Aligned_cols=314 Identities=15% Similarity=0.136 Sum_probs=194.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCC---CCCC------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHHhc-cC
Q 011856 113 IGHADDQVLAALGETMKKGTS---FGAP------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF-TG 180 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~~---~~~~------~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar~~-~~ 180 (476)
.|..++.+.+++.+.++.... .+.. .....++.+.++++++ . .+++++++|+++++..+++..... .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~ 87 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKP 87 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCC
Confidence 455689999999888765211 1111 2334567788888875 3 568999999999999999853211 14
Q ss_pred CceEEEEeCCCCCCchhHH---hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 181 RERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
+++|++.+..|.+...... ...|..+...+... .+ .-|++++++.+.+ ++++|++..+++
T Consensus 88 g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~---~~~~v~~~~~~~ 150 (373)
T cd06453 88 GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DG-------------QLDLEALEKLLTE---RTKLVAVTHVSN 150 (373)
T ss_pred CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CC-------------CcCHHHHHHHhcC---CceEEEEeCccc
Confidence 5677777666655322211 12233222211110 00 0178999998864 577888877777
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhh
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l 335 (476)
++|.+.+ +++|.++|++||++||+|++|+.... ........+|++++| |.+++ .++|++++++++++.+
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~ 221 (373)
T cd06453 151 VLGTINP----VKEIGEIAHEAGVPVLVDGAQSAGHM----PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEM 221 (373)
T ss_pred ccCCcCC----HHHHHHHHHHcCCEEEEEhhhhcCce----eeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhcC
Confidence 8899988 89999999999999999999952111 111112346888777 99986 6689999999988877
Q ss_pred cCCCCc-c-----------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 336 APAGPM-Y-----------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 336 ~~~~~~-~-----------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
.+.... . .+...+.+..++.+..++++.+.+ ++..++.+++.+++++.|+++. ...+.
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 300 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIP-GVRVY 300 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC-CeEEe
Confidence 632100 0 011113344555566667777665 3345555666666666665531 01111
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------------CcceEEeC--CCcHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFTSL--AHSSDDI 460 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~~~~~~--~~t~e~i 460 (476)
......+.++.+.+.+. ...++.+.|.++||.+.++. ...+|+++ .+|++|+
T Consensus 301 ~~~~~~~~~~~~~~~~~--------------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di 366 (373)
T cd06453 301 GDAEDRAGVVSFNLEGI--------------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEI 366 (373)
T ss_pred CCccccCCeEEEEECCc--------------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHH
Confidence 11122455666665321 12578888999999987543 23567754 4699999
Q ss_pred HHHHHHH
Q 011856 461 QHTITAA 467 (476)
Q Consensus 461 ~~~~~~l 467 (476)
|++++.|
T Consensus 367 ~~~~~~l 373 (373)
T cd06453 367 DALVEAL 373 (373)
T ss_pred HHHHhhC
Confidence 9999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-19 Score=167.12 Aligned_cols=324 Identities=19% Similarity=0.179 Sum_probs=205.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~----------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~ 168 (476)
.|+|..+. .+ -+|++++++...++.. |+.| ....++-++.+++.++ .+++|+||++|||++
T Consensus 3 iYlD~~AT---Tp---~~~~v~~~m~~~~~~~--fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsn 74 (386)
T COG1104 3 IYLDNAAT---TP---VDPEVLEAMLPYLTEV--FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESN 74 (386)
T ss_pred cccccccc---CC---CCHHHHHHHHHHHHhh--cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHH
Confidence 47777665 22 3799999999998873 2222 2344566677777776 578999999999999
Q ss_pred HHHHHHH-Hhcc---CCceEEEEeCCCCCCchhHHhhc---CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh
Q 011856 169 MGVLRLA-RAFT---GRERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (476)
Q Consensus 169 ~~al~~a-r~~~---~~~~ii~~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 241 (476)
..||+-+ .++. ++++||+ ...=|-.....+... |..+..++ ++..|.. |+++|+++|+
T Consensus 75 NlaI~g~~~a~~~~~~~~HIIt-s~iEH~aVl~~~~~Le~~g~~Vtyl~-V~~~G~v-------------~~e~L~~al~ 139 (386)
T COG1104 75 NLAIKGAALAYRNAQKGKHIIT-SAIEHPAVLNTCRYLERQGFEVTYLP-VDSNGLV-------------DLEQLEEALR 139 (386)
T ss_pred HHHHHhhHHhhhcccCCCeEEE-cccccHHHHHHHHHHHhcCCeEEEeC-CCCCCeE-------------cHHHHHHhcC
Confidence 9999953 2222 2445554 445555444333322 43333222 1122321 7999999998
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCC
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGG 319 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G 319 (476)
. ++.+|.+..+||+.|.+.| +++|.++|+++|+++++|-||. .|+ ...+......|+++|| |-.| .
T Consensus 140 ~---~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa---~Gk-ipi~~~~~~vD~ls~SaHK~~G-p 207 (386)
T COG1104 140 P---DTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA---VGK-IPIDLEELGVDLLSFSAHKFGG-P 207 (386)
T ss_pred C---CceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh---cCc-eeccccccCcceEEeehhhccC-C
Confidence 4 7999999999999999999 9999999999999999999995 222 1122222236899887 5444 2
Q ss_pred CcEEEEEecHHHH-HhhcCC---CCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 320 LPVGAYGGRRDIM-EMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 320 ~~iG~~~~~~~i~-~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
-.+|++..++.+. +.+... .+....+|- |..+.++.-++++...+ +....++.+++++|.+.|.+......+
T Consensus 208 kGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTe--nv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~ 285 (386)
T COG1104 208 KGIGALYVRPGVRLEPLIHGGGQERGLRSGTE--NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYL 285 (386)
T ss_pred CceEEEEECCCCccCceeccCcCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 2499998766542 212111 112233343 45555555556665433 567778888888888888875322211
Q ss_pred ceE-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----------------------cce
Q 011856 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAG 449 (476)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~ 449 (476)
... .......+.+.|..- ..+.+...|-.+||.+..+.. ..+
T Consensus 286 ~g~~~~rlP~~~~~~f~gv--------------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~si 351 (386)
T COG1104 286 NGDDEPRLPNILNFSFPGV--------------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSI 351 (386)
T ss_pred cCCcccCCCCeEEEEeCCC--------------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccE
Confidence 111 122334444554321 124555666677999876531 124
Q ss_pred EEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|++ -..|++|+|.+++.|+++++.+
T Consensus 352 R~S~g~~tt~eei~~~~~~l~~~i~~l 378 (386)
T COG1104 352 RFSLGRFTTEEEIDAAAEALKEIIKRL 378 (386)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 665 5669999999999999998764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=172.97 Aligned_cols=325 Identities=18% Similarity=0.191 Sum_probs=201.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCC-CCC------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSF-GAP------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~-~~~------~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~ 168 (476)
.|+|..+. |..++.+.+++.+.++.. ... +.+ .+...++.+.+++++. . .++++|++|+++++
T Consensus 20 ~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l 93 (403)
T TIGR01979 20 VYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI 93 (403)
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence 46664433 446788999998877652 111 111 1234577788888886 3 57899999999999
Q ss_pred HHHHHHHH--hccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLAR--AFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..++.... ....++.|++.+..|++..... ....|..+...+.. ..+ .-|++++++.+.+
T Consensus 94 ~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~-~~~-------------~~~~~~l~~~i~~- 158 (403)
T TIGR01979 94 NLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD-DDG-------------TLDLDDLEKLLTE- 158 (403)
T ss_pred HHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-CCC-------------CCCHHHHHHHhcc-
Confidence 98887431 1344667777766666533222 11233322221111 001 0168999988864
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
++++|++..+++.+|.+.+ +++|.++|++||+++|+|++|. |... .... ...+|++ +++|.+|. .
T Consensus 159 --~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~g~~~---~~~~--~~~~d~~~~s~~K~~gp-~ 226 (403)
T TIGR01979 159 --KTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQAVPHMP---VDVQ--ALDCDFYVFSGHKMYGP-T 226 (403)
T ss_pred --CCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhhcCccc---cCcc--ccCCCEEEEecccccCC-C
Confidence 5778888878888999999 9999999999999999999995 2111 1111 2245765 57798762 2
Q ss_pred cEEEEEecHHHHHhhcCCCCc------------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGE 379 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~ 379 (476)
.+|++++++++++.+.+.... ..+..-+.+...+++..++++.+.+ +...++..++.++
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~ 306 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY 306 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 389999999887766421000 0000113455666777777877654 3456667777777
Q ss_pred HHHHHHHHhhhcCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------
Q 011856 380 LTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------- 445 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------- 445 (476)
+++.|+++. ++....+ ..+.++.+.+... ...++.+.|.++||.++.+.
T Consensus 307 l~~~l~~~~---g~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~ 369 (403)
T TIGR01979 307 ALERLGEIP---GLRIYGPRDAEDRGGIISFNVEGV--------------HPHDVGTILDEEGIAVRSGHHCAQPLMRRF 369 (403)
T ss_pred HHHHHhcCC---CEEEeCCCCccccCceEEEEeCCc--------------CHHHHHHHHhhCCEEEcchhhhhHHHHHHh
Confidence 777666531 1111111 1255666665321 12456778889999987542
Q ss_pred --CcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 --FEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 --~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|++ ..+|++|+++++++|+++++.+
T Consensus 370 ~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 370 GVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 2346775 4469999999999999887653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=171.40 Aligned_cols=312 Identities=16% Similarity=0.148 Sum_probs=191.7
Q ss_pred CcHHHHHHHHHHHHhc--CCCCCC--CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc----cCCceEEE
Q 011856 116 ADDQVLAALGETMKKG--TSFGAP--CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----TGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~~~~~~--~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~----~~~~~ii~ 186 (476)
.+|.+.+++.+.+... ....++ .+.+.++.+.++++++ ..+++++++||++++..++..++.. .+++.|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 5677788877765542 111122 3555788899999886 3567889999999999988765432 23356777
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
.+.+|+. ....+...|..+...+.... + ..|++++++.+++. ..+++++.| ++++|.+.+
T Consensus 112 ~~~~h~~-~~~~~~~~G~~~~~v~~~~~-~-------------~~d~~~l~~~l~~~--~~~vv~~~~-~~~tG~~~~-- 171 (373)
T TIGR03812 112 PESAHFS-FEKAAEMLGLELRYAPLDED-Y-------------TVDVKDVEDLIDDN--TIGIVGIAG-TTELGQIDD-- 171 (373)
T ss_pred CCcchHH-HHHHHHHcCCeEEEEeeCCC-C-------------CcCHHHHHHHHhhC--cEEEEEECC-CCCCCccCC--
Confidence 6665544 22233333433222111100 0 12799999998753 345566665 466888888
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-c-ccccc-hhhccCC---CCchhhh--hhhcCCCCcEEEEE-ecHHHHHhhcC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-R-LAYGG-AQEYFGV---TPDLTTL--GKIIGGGLPVGAYG-GRRDIMEMVAP 337 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g~~~-~~~~~g~---~pDi~t~--sK~lg~G~~iG~~~-~~~~i~~~l~~ 337 (476)
+++|.++|++||+++|+|++|.++ . ...++ ......+ ..|.+++ .|...+++|.|+++ .++++++.+..
T Consensus 172 --~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~ 249 (373)
T TIGR03812 172 --IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSV 249 (373)
T ss_pred --HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcc
Confidence 999999999999999999999754 1 11000 0001111 2244433 37333567888764 67888877642
Q ss_pred CCCccccC-----CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 338 AGPMYQAG-----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 338 ~~~~~~~~-----t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
..+..... ..+.++..++++.++|+.+.+ ++..++..++.++++++|+++. ......+...++.+.+.
T Consensus 250 ~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~v~~~~~ 325 (373)
T TIGR03812 250 DAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIG----FEPVIEPVLNIVAFEVD 325 (373)
T ss_pred cCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC----CeEEcCCCceEEEEEeC
Confidence 22211111 012345667778888887654 3567888888888888887752 21111223334333331
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+ ..++.+.|.++||++.... ...+|+ +..+|++|+++++++|++
T Consensus 326 -------------~---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 -------------D---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -------------C---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 1 1467888999999998763 345777 455899999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-19 Score=174.08 Aligned_cols=327 Identities=13% Similarity=0.079 Sum_probs=188.9
Q ss_pred CCCCcHHHHHHHHHHHHhc-C-C--CCC----CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 113 IGHADDQVLAALGETMKKG-T-S--FGA----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~-~-~--~~~----~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
-|+..|.+.+++.+.-... . + .+. ..+...++.+.+++++ +.+++++++|+++++..+++.. ..+++.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~i~~~~g~t~al~~~l~~~--~~~gd~V 86 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL-GMDEARVTPGAREGKFAVMHSL--CEKGDWV 86 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc-CCceEEEeCCHHHHHHHHHHHh--cCCCCEE
Confidence 3556788888887766331 1 1 111 2345678888898888 5589999999999999999842 2345566
Q ss_pred EEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC----CCeEEEEEcccCCCCC
Q 011856 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVVGNSG 260 (476)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~a~vi~ep~~~~~G 260 (476)
++...+|++.. ..+...|..+...+....... .-|++++++.+++.. .++++|+++.+++++|
T Consensus 87 l~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG 153 (361)
T cd06452 87 VVDGLAHYTSY-VAAERAGLNVREVPNTGHPEY------------HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYG 153 (361)
T ss_pred EEcCCcchHHH-HHHHhcCCEEEEEecCCCCCc------------ccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCe
Confidence 66655554432 333444443332221110000 117899998886421 2567777777777788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 340 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~ 340 (476)
.+.+ +++|.++|+++|+++|+||+|..-.. .+....++....+.+++|+++++.|+|++++++++++.+.....
T Consensus 154 ~~~~----~~~i~~~~~~~~~~vivD~a~~~g~~--~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~ 227 (361)
T cd06452 154 NLHD----AKKIAKVCHEYGVPLLLNGAYTVGRM--PVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQ 227 (361)
T ss_pred eecc----HHHHHHHHHHcCCeEEEECCcccCCc--CCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhcccc
Confidence 8877 99999999999999999999951110 11222234322344789999877799999999999988864322
Q ss_pred c-------cccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceE--eeeeceeEEEEEec
Q 011856 341 M-------YQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFTE 410 (476)
Q Consensus 341 ~-------~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~~i~~~~ 410 (476)
. ..+++ .++..+.++.++++.+.+ -+...+..++.+++++.|+++. ++... ..+...++.+...
T Consensus 228 ~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~v~~~~~~~~n~~~~~~~- 301 (361)
T cd06452 228 MFKIKEVELLGCT--LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIE---GIKQLGEKPKNHDLMFFETP- 301 (361)
T ss_pred ccccceeeeeccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEECCCCCCCceEEEEcC-
Confidence 1 11112 112234444555554322 1122222334466666666541 11110 0123334433321
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEEe-CCCcHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS-LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~-~~~t~e~i~~~~~~l~~~~ 471 (476)
.+............++.+.|+++||++...+. ..+|+. ..+++++++.++++|+++.
T Consensus 302 ----~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 302 ----SFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ----CcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 00000000011123688999999999654333 234553 3579999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=169.76 Aligned_cols=297 Identities=16% Similarity=0.173 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHhhCCC-C--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCCC
Q 011856 139 LLENVLAEMVISAVPS-I--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~-~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~ 214 (476)
+...++.+.++++++. . +.+++++||+++++.++... ...++++++...++|+.. .......|..+...+.+..
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l--~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~ 112 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA--VPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEV 112 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc--CCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC
Confidence 3445677788888762 2 36999999999999999842 345667777777777753 2222333443332221111
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 294 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~ 294 (476)
.. -|++++++++++++ +++.+.+..+.+.+|.+.| +++|.++|++||+++|+|++|+ +.
T Consensus 113 ~~--------------~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g- 171 (363)
T TIGR02326 113 EP--------------PDVVEVEAILAADP-AITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FG- 171 (363)
T ss_pred CC--------------CCHHHHHHHHhhCC-CccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-cc-
Confidence 11 17999999997642 4555666666677899998 9999999999999999999885 31
Q ss_pred cccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc-c--------------ccCCCCCcHHHHHHH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-Y--------------QAGTLSGNPLAMTAG 357 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~-~--------------~~~t~~~~~~~~aaa 357 (476)
+.......+ .+|++ +++|+++++..+|+++++++.++.+...... . ....|..++..+.+.
T Consensus 172 ~~~~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al 249 (363)
T TIGR02326 172 GIPIDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAF 249 (363)
T ss_pred Ccccchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHH
Confidence 011112222 35655 6789997655589999999887765421110 0 012345577777777
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 358 IHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 358 ~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
.++++.+.+ ++..++++++.+++++.|+++.......... ..+.+.++.+...+ ......+.+.
T Consensus 250 ~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~v~~~ 317 (363)
T TIGR02326 250 AQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEI-QSPIITSFYSPEDP-----------DYRFADFYQR 317 (363)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc-CCceEEEEECCCCC-----------CCCHHHHHHH
Confidence 778876543 2455677777888888877652211101011 12333444442210 0113567888
Q ss_pred HHHCCeEeccCC---CcceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 434 MLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 434 l~~~Gv~~~~~~---~~~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
|.++||.+.++. ...+|++ ..++.+|+++++++|++++.
T Consensus 318 L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 318 LKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 999999998874 2457885 34699999999999998763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=162.22 Aligned_cols=323 Identities=21% Similarity=0.217 Sum_probs=197.2
Q ss_pred EecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCC
Q 011856 102 IDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~ 181 (476)
+||.|. +.-| .+|++.+++.++-.-+..-++.++.-.++.+++++.+ +.+.++|++|||.||..+|. ..+.+
T Consensus 2 ~~f~SD---n~~g-~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~-g~~a~~Fv~sGT~aN~lal~---~~~~~ 73 (342)
T COG2008 2 IDFRSD---NVAG-PTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELF-GKEAALFVPSGTQANQLALA---AHCQP 73 (342)
T ss_pred CccccC---ccCC-CCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHh-CCceEEEecCccHHHHHHHH---HhcCC
Confidence 466665 3333 7999999998765444444557788889999999998 55999999999999999999 55666
Q ss_pred ceEEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccC
Q 011856 182 ERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVV 256 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~ 256 (476)
...++....-|-..+.+ ....+........+...|.. ++++++..+.. +...+..++.|...
T Consensus 74 ~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gkl-------------t~e~v~~~i~~~d~~~~~~~~~~~e~~~ 140 (342)
T COG2008 74 GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKL-------------TPEDVEAAIRPDDIHHAPTPLAVLENTA 140 (342)
T ss_pred CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCc-------------CHHHHHHhhcCCCcccCCCceEEEeecc
Confidence 66666666666544322 21112111111112122211 78999998864 22345666666666
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc--Cc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEE-EecHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT--GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRD 330 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~--g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~-~~~~~ 330 (476)
+++|.+.|.++ |++|.++|++||+.|.+|-+.- .. ..+ -....+.-..|++ ++||.+ |+|+|++ +++++
T Consensus 141 te~GtVy~l~e-l~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g--~~~~gAiv~gn~~ 215 (342)
T COG2008 141 TEGGTVYPLDE-LEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGG--GAPVGAIVFGNRD 215 (342)
T ss_pred CCCceecCHHH-HHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCC--cceeeeEEEcCHH
Confidence 68888877555 9999999999999999996652 11 111 1111122234665 466754 5689988 77899
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
+++.++...+. .++-++-.-+..++++..|+ +++. .+..++..+|.++|++. .+.....+...+++.+
T Consensus 216 ~~~~a~~~rK~-~Ggl~~k~r~laA~~~~~l~----~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~ 287 (342)
T COG2008 216 FAKRARRWRKR-AGGLMRKARFLAAQGLYALE----DDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFV 287 (342)
T ss_pred HHHHHHHHHHH-hcccHhhhhHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEE
Confidence 88877532222 23333444455555555554 3322 22333355565555532 2333333345566666
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+.+. ..........+..+|+++.+.+ ..+|+ +...+++|++++++.+++++
T Consensus 288 ~l~~~------------~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 288 RLPES------------AIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ECChH------------HHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 55321 1122334455667788877765 34554 78899999999999988764
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-17 Score=166.80 Aligned_cols=326 Identities=15% Similarity=0.163 Sum_probs=204.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--C-CCCC------CHHHHHHHHHHHhhCC--CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--S-FGAP------CLLENVLAEMVISAVP--SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~-~~~~------~~~~~~la~~l~~~~~--~~e~v~~~~sGse 166 (476)
+..|+|..+. +..++.+.+++.+.+.... . .+.. .+...++.+.+++++. ..++|+|++|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 3467886654 3357899999988886521 1 1111 2335577788888885 3579999999999
Q ss_pred HHHHHHHHHH--hccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh
Q 011856 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (476)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 241 (476)
++..+++... ...++++|++.+..||+....... ..|..+...+... .+ .-|+++|++.++
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~i~ 162 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP-DG-------------TLQLETLPALFD 162 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CCCHHHHHHhcC
Confidence 9998887421 224567788887777765433222 2233222211110 01 017899998886
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhcCCC
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGG 319 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg~G 319 (476)
+ ++++|++..+++++|.+.| +++|.++|+++|+++|+|++|.-... ..... ...+|+++ ++|.+|.
T Consensus 163 ~---~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~~g~~--~~~~~--~~~~D~~~~s~~K~~gp- 230 (406)
T PRK09295 163 E---RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQAVMHH--PVDVQ--ALDCDFYVFSGHKLYGP- 230 (406)
T ss_pred C---CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccccCcc--ccCch--hcCCCEEEeehhhccCC-
Confidence 3 5778888888888999999 99999999999999999999952111 11111 23457765 5596662
Q ss_pred CcEEEEEecHHHHHhhcCC--C-Cc----------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 011856 320 LPVGAYGGRRDIMEMVAPA--G-PM----------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 377 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~--~-~~----------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 377 (476)
-.+|++++++++++.+.+. + .. ..+-+-+.|..+..+..++++.+.+ +...++.+++.
T Consensus 231 ~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 310 (406)
T PRK09295 231 TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLM 310 (406)
T ss_pred CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2389999999987765421 0 00 0011114567778888888887765 34556666677
Q ss_pred HHHHHHHHHHhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------
Q 011856 378 GELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------- 445 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------- 445 (476)
++++++|.++. ++.... .....++.+.+... ...++.+.|.++||.++.+.
T Consensus 311 ~~l~~~l~~~~---~~~~~~~~~~~~iv~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~ 373 (406)
T PRK09295 311 HYALSQLESVP---DLTLYGPQNRLGVIAFNLGKH--------------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_pred HHHHHHHhcCC---CEEEeCCCCCceEEEEEECCc--------------CHHHHHHHHHhCCeEEeccccchHHHHHHHC
Confidence 77777666531 111110 11234555544211 12456677888999987542
Q ss_pred -CcceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 446 -FEAGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 446 -~~~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
...+|++ ...|++|||.++++|+++..
T Consensus 374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 1236765 56799999999999998754
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=166.17 Aligned_cols=319 Identities=16% Similarity=0.161 Sum_probs=194.9
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
..+.+.+++.+... +.. ...+...++.+.++++++. .+.+++++||+++++.++... ...++++++...++
T Consensus 16 ~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l--~~~~~~vlv~~~~~ 90 (368)
T PRK13479 16 TSRTVREAMLRDWG---SWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL--VPRDGKVLVPDNGA 90 (368)
T ss_pred CCHHHHHHhCCCCC---CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc--cCCCCeEEEEeCCc
Confidence 35666666654431 111 0124567788888888753 245889999999999999843 34567788887777
Q ss_pred CCCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
++... ..+...|..+...+.+... ..|++++++.++++ +++++|.+..+++.+|.+.| ++
T Consensus 91 ~~~~~~~~~~~~g~~~~~i~~~~~~--------------~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~----~~ 151 (368)
T PRK13479 91 YGARIAQIAEYLGIAHVVLDTGEDE--------------PPDAAEVEAALAAD-PRITHVALVHCETTTGILNP----LD 151 (368)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCC--------------CCCHHHHHHHHHhC-CCCcEEEEEcccCccccccC----HH
Confidence 76431 2223334433322211101 12799999998754 24556666666667888888 89
Q ss_pred HHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc------
Q 011856 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 342 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~------ 342 (476)
+|.++|+++|+++|+|++| +|.. ... +.....+|++ +++|.+.+...+|++++++++++.+......+
T Consensus 152 ~i~~l~~~~~~~livDa~~-~~g~-~~~--~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T PRK13479 152 EIAAVAKRHGKRLIVDAMS-SFGA-IPI--DIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYD 227 (368)
T ss_pred HHHHHHHHcCCEEEEEccc-ccCC-ccc--cccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHH
Confidence 9999999999999999777 3411 011 1112235655 67898865444799999999988775421110
Q ss_pred --------ccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec
Q 011856 343 --------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (476)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (476)
....|+.+...+.+..++++.+.+ ++..+++.++.+++++.|+++..........+ ......+.+..
T Consensus 228 ~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~~~~~ 306 (368)
T PRK13479 228 QWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQ-SPIIVTFHAPA 306 (368)
T ss_pred HHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhc-CceEEEEECCC
Confidence 011135566666777777776543 34455666677777777766422111000011 11222232221
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---cceEEeC--CCcHHHHHHHHHHHHHHHHHh
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+ .....++.+.|.++||.+.++.. ..+|++. .++++|+++++++|+++++++
T Consensus 307 ~~-----------~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 307 DP-----------AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred CC-----------CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 10 01125788899999999987632 3578853 459999999999999998764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=163.60 Aligned_cols=322 Identities=14% Similarity=0.108 Sum_probs=191.4
Q ss_pred EEEecccChhhccCCC--CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 100 EYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.+|+-.+.+ .+||- .++++.+++.+.++. +....++..++++++++++ +.+++++++|+++|+..+++..
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~a~~~-g~~~~~~~~g~t~al~~al~al-- 80 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQN---YFEIKELVNKTGEYIANLL-GVEDAVIVSSASAGIAQSVAAV-- 80 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhh-CCCeEEEEcCHHHHHHHHHHHH--
Confidence 445544333 45666 489999999998764 3345677888999999988 6678999999999999999854
Q ss_pred ccCCc---------------eEEEEeCCCCCCc---hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 178 FTGRE---------------RIIKFEGCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 178 ~~~~~---------------~ii~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
..+++ .||+..+.|..+. ...+...|..+...+. . ..-|+++++++
T Consensus 81 ~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~---~-------------~~~d~~~le~a 144 (363)
T TIGR01437 81 ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY---A-------------NECSAEQLEAA 144 (363)
T ss_pred hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC---C-------------CCCCHHHHHHh
Confidence 22333 6777665554321 2333334432221111 0 01289999999
Q ss_pred HhcCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhc
Q 011856 240 FENNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKII 316 (476)
Q Consensus 240 l~~~~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~l 316 (476)
+.. ++++++ ++..++.+|.+.+ +++|.++|++||+++|+|++|. ... . ....+| .|+++ .+|.+
T Consensus 145 i~~---~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~~~--~-~~~~~g--~D~~~~S~~K~l 211 (363)
T TIGR01437 145 ITE---KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-EDL--Q-KYYRLG--ADLVIYSGAKAI 211 (363)
T ss_pred cCh---hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-Cch--H-HHHHcC--CCEEEEeCCccc
Confidence 974 445544 4554456777878 8999999999999999999996 200 0 011123 47664 56988
Q ss_pred CCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 317 g~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+ |+++|++++++++++.+...... ....+......+++..++++.+.+ .+..+...++.++++++|.++. .....
T Consensus 212 ~-gp~~G~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~-g~~~~ 288 (363)
T TIGR01437 212 E-GPTSGLVLGKKKYIEWVKLQSKG-IGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLK-GVSAS 288 (363)
T ss_pred C-CCceEEEEEcHHHHHHHHhccCC-CcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCC-CeEEE
Confidence 5 56799999998888776421100 000111112334455556665543 4555555566667777777641 11111
Q ss_pred eEeeeece---eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC--eEeccC--CCcceEE-eCCCcHHHHHHHHHH
Q 011856 395 ICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPS--QFEAGFT-SLAHSSDDIQHTITA 466 (476)
Q Consensus 395 ~~v~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~~~~~--~~~~~~~-~~~~t~e~i~~~~~~ 466 (476)
......+. ...+.|.... ......++.+.|.++| |+.++. ....+++ ....+++|++.++++
T Consensus 289 ~~~~~~~~~~~~~~v~~~~~~----------~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~e~~~~~~~ 358 (363)
T TIGR01437 289 IVQDEAGRDIARAEIRFDESE----------LGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGGQLDIIVER 358 (363)
T ss_pred EecCCCCCcCceEEEEEeccC----------CCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHHHHHHHHHH
Confidence 00011111 1222232100 0112367888888777 777642 2234555 235679999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 359 l~~~~ 363 (363)
T TIGR01437 359 IREIV 363 (363)
T ss_pred HHHhC
Confidence 98763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-17 Score=167.01 Aligned_cols=321 Identities=15% Similarity=0.044 Sum_probs=186.7
Q ss_pred CCCCcHHHHHHHHHHHHhc---C--CC-C---CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 113 IGHADDQVLAALGETMKKG---T--SF-G---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~---~--~~-~---~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
.|..++.+.+++.+.++.. . .. . .......++ +.+ ++++ .+++|+|++|+|+++..+++......+++
T Consensus 36 ~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~ 113 (406)
T TIGR01814 36 LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKR 113 (406)
T ss_pred cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCc
Confidence 3445788999988776541 1 11 1 111222333 334 5565 56799999999999999988431111123
Q ss_pred eEEEEeCCCCCCchhHH----hhcCCCCcc--CCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 183 RIIKFEGCYHGHADPFL----VKAGSGVAT--LGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~----~~~g~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
.+|+....-|......+ ...|..+.. ...+. ..+ .-|++++++.++...+++++|+++.+
T Consensus 114 ~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-------------~~~~~~l~~~~~~~~~~t~lv~~~~v 180 (406)
T TIGR01814 114 YKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEE-------------TLRLEDILDTIEKNGDDIAVILLSGV 180 (406)
T ss_pred cEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCC-------------ccCHHHHHHHHHhcCCCeEEEEEecc
Confidence 34445444444322222 122322100 00000 000 01688898888654457899999999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHh
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~ 334 (476)
++++|.+.| +++|.++|++||+++++|++|+. |. ....+.+|++..+.+..|.+.+|.. |++...++..+.
T Consensus 181 ~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~~---G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~ 252 (406)
T TIGR01814 181 QYYTGQLFD----MAAITRAAHAKGALVGFDLAHAV---GNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHT 252 (406)
T ss_pred ccccceecC----HHHHHHHHHHcCCEEEEEccccc---CCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhh
Confidence 999999999 99999999999999999999951 11 1112223433333456799876543 444443333333
Q ss_pred hcCCCCcccc----------C----------CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 335 VAPAGPMYQA----------G----------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 335 l~~~~~~~~~----------~----------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+.+......+ . ..+.|..++++..++|+.+.+ +...++.+++.+++++.|+++....
T Consensus 253 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~ 332 (406)
T TIGR01814 253 ERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGP 332 (406)
T ss_pred cCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3321000000 0 112456777778888988755 4556677777777777776541100
Q ss_pred C-Cce----EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeC---CCcHHHHHHH
Q 011856 392 G-HAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL---AHSSDDIQHT 463 (476)
Q Consensus 392 ~-~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~---~~t~e~i~~~ 463 (476)
+ +.. +....+.++.+.+. . ...++.+.|.++||++.......+|+++ .+|++|||++
T Consensus 333 ~~~~i~~~~~~~~r~~~v~~~~~-~--------------~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l 397 (406)
T TIGR01814 333 PVLTIITPRDHAQRGCQLSLTHP-V--------------PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDA 397 (406)
T ss_pred CceEEeCCCChhhcCCeEEEEec-C--------------CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHHHH
Confidence 1 110 11123445555542 0 1256788888999998755445678764 5599999999
Q ss_pred HHHHHHHH
Q 011856 464 ITAAEKVK 471 (476)
Q Consensus 464 ~~~l~~~~ 471 (476)
+++|++++
T Consensus 398 ~~~l~~~~ 405 (406)
T TIGR01814 398 VNVLEEIL 405 (406)
T ss_pred HHHHHHHh
Confidence 99998865
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-17 Score=162.05 Aligned_cols=325 Identities=22% Similarity=0.241 Sum_probs=216.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc---CCCCC------CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~---~~~~~------~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~ 168 (476)
.|+|..++ +..+..|.+++.+...+. .+.+. ..+..++.++.+++++. + .+.|+||.+.|+++
T Consensus 24 vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~al 97 (405)
T COG0520 24 VYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEAL 97 (405)
T ss_pred EEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHH
Confidence 57776554 336889999999887652 12221 13456677888888886 4 48899999999999
Q ss_pred HHHHHHH-HhccCCceEEEEeCCCCCCchhHHhhc---CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
..+.... +....++.||+.+--+|.......... |..+...+.. ..+. -++++++..+.
T Consensus 98 n~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~-------------~~~~~~~~~i~--- 160 (405)
T COG0520 98 NLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGL-------------LDLDALEKLIT--- 160 (405)
T ss_pred HHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCC-------------cCHHHHHHhcC---
Confidence 9988843 224556889998888888776665544 3322222211 1121 16888888776
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCCcE
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPV 322 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~i 322 (476)
+++++|.+..+.+.+|.+.| +++|.++|+++|+++++|-+|+- + ....+.-.+..|++.|| |.+.|.-.+
T Consensus 161 ~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~~---~-h~~idv~~l~~Df~afsgHKwl~gP~Gi 232 (405)
T COG0520 161 PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQAA---G-HLPIDVQELGCDFLAFSGHKWLLGPTGI 232 (405)
T ss_pred CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECcccc---C-ccCCCchhcCCCEEEEcccccccCCCce
Confidence 37999999999999999999 99999999999999999999951 1 11122223356888776 866643459
Q ss_pred EEEEecHHHHHhhcCC---CCccc------cCCC----------CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 011856 323 GAYGGRRDIMEMVAPA---GPMYQ------AGTL----------SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGEL 380 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~---~~~~~------~~t~----------~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l 380 (476)
|.+.+++++++.+.+. +.+.. ..++ ..|.....+..++++.+++ ++..++.+++.+++
T Consensus 233 GvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~ 312 (405)
T COG0520 233 GVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYL 312 (405)
T ss_pred EEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999987541 11000 0011 1244444455567776655 45666677777777
Q ss_pred HHHHHHHhhhcCCceEee---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc---------
Q 011856 381 TQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--------- 448 (476)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--------- 448 (476)
.++|.++.. +....+ ..+.++.+.+... ...++...|.++||.++.+....
T Consensus 313 ~~~L~~~~~---v~i~g~~~~~r~~~vsF~v~~~--------------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~ 375 (405)
T COG0520 313 LEGLSELPG---VEIYGPPDADRGGIVSFNVKGI--------------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGV 375 (405)
T ss_pred HHHHhcCCC---eEEecCCcccCceEEEEEeCCC--------------CHHHHHHHHHhCCeEEEeccccccHHHHhcCC
Confidence 777766421 111111 3566666666432 12678889999998888764322
Q ss_pred ---eEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 449 ---GFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 449 ---~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+|+ .+.+|+||||+++++|+++.+
T Consensus 376 ~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 376 DATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 565 467899999999999998764
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-18 Score=168.29 Aligned_cols=318 Identities=14% Similarity=0.065 Sum_probs=199.5
Q ss_pred cHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 117 DDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~--~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
+++|++++.+... .+. ...+...++++.+++++. . .+.+++++||+++++.++.. ...++++|++.+.+|+
T Consensus 21 ~~~V~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~--~~~~Gd~Vlv~~~~~~ 95 (401)
T PLN02409 21 PERVLRAMNRPNE---DHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTN--TLSPGDKVVSFRIGQF 95 (401)
T ss_pred CHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHh--cCCCCCEEEEeCCCch
Confidence 5666666543221 111 123566778888888876 2 35689999999999999874 3456788999887776
Q ss_pred CCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
+... ..+...|..+...+.+...+ -|++++++.+++.. +++++|++..+.+.+|.+.| ++
T Consensus 96 ~~~~~~~~~~~g~~v~~v~~~~~~~--------------~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----~~ 157 (401)
T PLN02409 96 SLLWIDQMQRLNFDVDVVESPWGQG--------------ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----LA 157 (401)
T ss_pred hHHHHHHHHHcCCceEEEECCCCCC--------------CCHHHHHHHHhhCcCCCccEEEEEeecccccccCC----HH
Confidence 6432 12222343332221111111 17899999998521 25788888888778999998 88
Q ss_pred HHHHH--HHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCC--Cccc-
Q 011856 271 AIRRI--TKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG--PMYQ- 343 (476)
Q Consensus 271 ~l~~l--~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~--~~~~- 343 (476)
+|.++ |+++|+++|+|++|+ + |. ...+......|++ +.+|++++..++|+++.++++++.+.+.. +.+.
T Consensus 158 ~i~~l~~~~~~g~~~vvD~v~s-~--g~-~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~ 233 (401)
T PLN02409 158 GVRKLLDCAQHPALLLVDGVSS-I--GA-LDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFD 233 (401)
T ss_pred HHHHHHhhhccCcEEEEEcccc-c--CC-ccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecC
Confidence 88888 999999999999995 2 11 0111112234655 56799986567999999999988875421 1110
Q ss_pred ---------cC---CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 344 ---------AG---TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 344 ---------~~---t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
.+ .++.|...+.+..++++.+.+ ++..++.+++.+++++.|+++..+...+..-...+.+.++.+
T Consensus 234 ~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~ 313 (401)
T PLN02409 234 WADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVV 313 (401)
T ss_pred HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeC
Confidence 11 234556677778888887654 566677778888888887765221111100011223334433
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.. .....++.+.|. ++|+.+..+. ...+|++ ..++++|+..++++|++++.++
T Consensus 314 p~-------------~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 314 PE-------------GIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred CC-------------CCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 21 111245666665 6699998763 2346773 4569999999999999998763
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=166.92 Aligned_cols=327 Identities=16% Similarity=0.127 Sum_probs=201.9
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-C-CCCC-------CHHHHHHHHHHHhhCCC--CCeEEEeCCHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-S-FGAP-------CLLENVLAEMVISAVPS--IEMVRFVNSGTEA 167 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~-~~~~-------~~~~~~la~~l~~~~~~--~e~v~~~~sGseA 167 (476)
..|+|..+. |..++.|.+++.+.+.... . .... .+...++.+.+++++.. .++|+|++|++++
T Consensus 33 ~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred eEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 356775332 4467889999988776521 1 1111 12245777888888862 4799999999999
Q ss_pred HHHHHHHH-H-hccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 168 CMGVLRLA-R-AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 168 ~~~al~~a-r-~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
+..+++.. . ...+++.|++.+..|++...... ...|..+...+...... .|++++++.++.
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~--------------~~~~~l~~~i~~ 172 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEV--------------LDVEQLKELLSE 172 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCC--------------cCHHHHHHHhcc
Confidence 99988742 1 23456778877776665433222 22233222211110001 178999998863
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCC
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGG 319 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G 319 (476)
++++|++..+++.+|.+.| +++|.++|+++|+++|+|++|. |.. ..... ...+|++ ++.|.+| .
T Consensus 173 ---~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~~g-p 239 (424)
T PLN02855 173 ---KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQSVPHM---PVDVQ--TLGADFLVASSHKMCG-P 239 (424)
T ss_pred ---CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCCc---CCCch--hcCCCEEEeecccccC-C
Confidence 6788888888888999999 8999999999999999999994 211 11111 2235766 5789554 2
Q ss_pred CcEEEEEecHHHHHhhcCCC---Cc----------c-----ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHH
Q 011856 320 LPVGAYGGRRDIMEMVAPAG---PM----------Y-----QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 378 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~---~~----------~-----~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 378 (476)
-.+|++++++++++.+.+.. .. + .+...+.+..+.++..++++.+.+ +...++..++.+
T Consensus 240 ~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 319 (424)
T PLN02855 240 TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGT 319 (424)
T ss_pred CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 24899999999887765310 00 0 001112455566666677876654 455566666777
Q ss_pred HHHHHHHHHhhhcCCceE----eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC--------
Q 011856 379 ELTQGIIDAGKKAGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------- 445 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~----v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-------- 445 (476)
++++.|+++. ...+... ....+.++.+.+... ...++.+.|.++ ||.++.+.
T Consensus 320 ~l~~~L~~~~-g~~i~~~~~~~~~~r~~~v~~~~~~~--------------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~ 384 (424)
T PLN02855 320 YLYEKLSSVP-GVRIYGPKPSEGVGRAALCAFNVEGI--------------HPTDLSTFLDQQHGVAIRSGHHCAQPLHR 384 (424)
T ss_pred HHHHHHhcCC-CEEEeCCCcccccCcccEEEEEECCc--------------CHHHHHHHhcccCCEEEechhhhhHHHHH
Confidence 7777665531 1111100 112244555555211 124677888777 99987543
Q ss_pred ----CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 446 ----FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 ----~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|++ ...|++|++++++.|++++..
T Consensus 385 ~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 385 YLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred HhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 1246665 567999999999999998865
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=166.62 Aligned_cols=351 Identities=15% Similarity=0.053 Sum_probs=193.1
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~a 175 (476)
.-|..||||.+-.++ ..+.++..+++..+...+.......+|.+.+++++ +.+.+++++||++|+..+++
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~-g~~~vv~t~~Gt~Al~la~~-- 86 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLF-GFKHIIPTHQGRGAENILFS-- 86 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHH--
Confidence 346678898876433 45666666666654333334444567777777777 77899999999999999998
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcC-CCCeEEEEEc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENN-KGEIAAIILE 253 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~-~~~~a~vi~e 253 (476)
++.+++++|..++.|..+ .......|..+...+....... .....+.+| |+++|++.+++. .+.+++|+++
T Consensus 87 -al~~pGD~V~~~~~f~~~-~~~i~~~Ga~pv~v~i~~~~~~-----~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~ 159 (431)
T cd00617 87 -ILLKPGRTVPSNMHFDTT-RGHIEANGAVPVDLVIDEAHDA-----QELIPFKGNIDVAKLEKLIDEVGAENIPYIVLT 159 (431)
T ss_pred -HhCCCCCEEccCCcccch-HHHHHhCCCEeEEEeccccccc-----ccccCCCCCcCHHHHHHHhCcccCCCccEEEEE
Confidence 444555555544445443 3344444543332221100000 000001111 899999999854 2347777776
Q ss_pred ccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C---c---cccccchhhccCCCCchhhhhhhcC-CCCc---
Q 011856 254 PVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F---RLAYGGAQEYFGVTPDLTTLGKIIG-GGLP--- 321 (476)
Q Consensus 254 p~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g---~---r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~--- 321 (476)
..+| .+|...+ .+.+++|.++|++||++||.|+++. + | |.+.........+...+.++||++. +|++
T Consensus 160 ~p~N~~gG~~~s-~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~ 238 (431)
T cd00617 160 ITNNTAGGQPVS-MANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL 238 (431)
T ss_pred CCcCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCC
Confidence 4444 4576654 5559999999999999999999974 1 1 1110000000001112234666665 4554
Q ss_pred ---EEEEEecH-HHHHhhcCCCC-ccccCCCCCcHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 322 ---VGAYGGRR-DIMEMVAPAGP-MYQAGTLSGNPLAMTAGIH-TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 322 ---iG~~~~~~-~i~~~l~~~~~-~~~~~t~~~~~~~~aaa~a-al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
.|++++++ ++++.++.... .....++++....+.++++ +|+...+.+..++..++.+++.+.|.+. +++.
T Consensus 239 ~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~----G~~v 314 (431)
T cd00617 239 VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA----GVPI 314 (431)
T ss_pred CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC----CCCc
Confidence 55778876 58887763211 1112233332222333333 5654322333444444557777777765 4444
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-----------------CcceEEe---CC
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTS---LA 454 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-----------------~~~~~~~---~~ 454 (476)
..+..|.+++++...- .+...++.....+|+..| .+.||.+...+ .+.+|+. -.
T Consensus 315 ~~P~Ggh~v~~d~~~~-----~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~ 389 (431)
T cd00617 315 VEPAGGHAVFIDAREF-----LPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRV 389 (431)
T ss_pred cCCCcceEEEEEhHHh-----cCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccc
Confidence 4455666677665421 000000111235666444 46678754311 1234552 36
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~ 473 (476)
.|.+++|.+.+++.++++.
T Consensus 390 ~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 390 YTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 6999999999999988764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-17 Score=163.85 Aligned_cols=326 Identities=15% Similarity=0.135 Sum_probs=184.2
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHH-h-c--C---CCCCCCH----HHHHHHHHHHhhCCCCCeEEEeCCHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMK-K-G--T---SFGAPCL----LENVLAEMVISAVPSIEMVRFVNSGTEA 167 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~-~-~--~---~~~~~~~----~~~~la~~l~~~~~~~e~v~~~~sGseA 167 (476)
++.|++..+- ++ -+|.|++++.+.+. + + . .+....+ ++...++.++++++.....++.+||++|
T Consensus 19 ~~~~~~~~~~--~~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a 93 (402)
T cd00378 19 RETLELIASE--NF---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA 93 (402)
T ss_pred HhCeeeeccC--Cc---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence 3456665442 33 38999999987653 2 1 0 1111122 2222444566777522222444579999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhH----HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPF----LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
+..+++.. ...+++|++.++.|.+..... +...|..+....++.... . ..-|++++++.+.+.
T Consensus 94 ~~~~l~~l--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~id~~~l~~~i~~~ 160 (402)
T cd00378 94 NLAVYFAL--LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPE--------T---GLIDYDALEKMALEF 160 (402)
T ss_pred HHHHHHHh--cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcc--------c---CCcCHHHHHHHHHhC
Confidence 99999853 345677888887776543211 111222111111110000 0 001899999998643
Q ss_pred CCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCC
Q 011856 244 KGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 244 ~~~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
+++++++ +|.+ |...+ +++|.++|++||+++|+||+| .|+ ..|... ..+. ..|++ +++|++ +
T Consensus 161 --~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~-~~dv~~~s~sK~l-~ 227 (402)
T cd00378 161 --KPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP-GADVVTTTTHKTL-R 227 (402)
T ss_pred --CCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-CCcEEEeccccCC-C
Confidence 3455555 4433 34445 899999999999999999997 665 333211 1112 34654 689999 6
Q ss_pred CCcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-c-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 319 GLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-K-E-PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 319 G~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
|+|+|++++++ ++++.+.........++ .++..++++..++... . . ++..++++++.+++.+.|.+. ++.
T Consensus 228 G~~gg~i~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 301 (402)
T cd00378 228 GPRGGLILTRKGELAKKINSAVFPGLQGG--PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER----GFK 301 (402)
T ss_pred CCCceEEEeccHHHHHHHHHHhCccccCC--chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC----CCe
Confidence 78999998877 88887753211111111 1222333333334333 2 1 456677788888888888764 222
Q ss_pred eE-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeC------CCcH
Q 011856 395 IC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSS 457 (476)
Q Consensus 395 ~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~------~~t~ 457 (476)
.. ....+.++++.+..... ....+.+.|.++||.+.+.. ...+|++. .+++
T Consensus 302 ~~~~~~~~~~v~v~~~~~~~------------~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~ 369 (402)
T cd00378 302 VVSGGTDNHLVLVDLRPKGI------------TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGE 369 (402)
T ss_pred EeecCCCCeEEEEeCCccCC------------CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCH
Confidence 11 12346677777642110 11355667788899997431 23466632 4579
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVKMR 473 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~ 473 (476)
+|++++++.|++++.+
T Consensus 370 ~di~~~~~~l~~~~~~ 385 (402)
T cd00378 370 EEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999997753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=170.07 Aligned_cols=238 Identities=19% Similarity=0.155 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|.++++++. +.+.+++++||++|+..+++.. ...++.|++....|++..........
T Consensus 37 ~~~p~~~~le~~la~l~-g~~~a~~~~sG~~Ai~~~l~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~------------ 101 (369)
T cd00614 37 IGNPTVDALEKKLAALE-GGEAALAFSSGMAAISTVLLAL--LKAGDHVVASDDLYGGTYRLFERLLP------------ 101 (369)
T ss_pred CCChhHHHHHHHHHHHH-CCCCEEEEcCHHHHHHHHHHHH--cCCCCEEEECCCCcchHHHHHHHHHh------------
Confidence 35677788889998888 5578889999999999999842 34566777777777774322211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
..+..+..++.+|++++++.+++ ++++|++|+++|+.|.+.+ +++|.++|++||++||+|++|.....
T Consensus 102 ----~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~~~- 169 (369)
T cd00614 102 ----KLGIEVTFVDPDDPEALEAAIKP---ETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATPYL- 169 (369)
T ss_pred ----hcCeEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcchhc-
Confidence 01123556677789999998863 6789999999999999998 99999999999999999999952211
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
...+....|++ +++|.+++ | .++|++++++ ++++.++... .......+|..+.+++..|+.+ +...
T Consensus 170 ----~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---~~~g~~~~p~~a~~~l~~l~tl--~~r~ 240 (369)
T cd00614 170 ----QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR---LALGTILSPFDAWLLLRGLKTL--PLRM 240 (369)
T ss_pred ----CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH---HhhCCCCCHHHHHHHHcCCCCH--HHHH
Confidence 11122345766 78999985 4 7899999987 8887776321 1123356777777665555422 3456
Q ss_pred HHHHHHHHHHHHHHHHHhhh----cCC-ce---------EeeeeceeEEEEEe
Q 011856 371 EYLNKITGELTQGIIDAGKK----AGH-AI---------CGGYISGMFGFFFT 409 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~----~~~-~~---------~v~~~g~~~~i~~~ 409 (476)
++..++..++.+.|++...- +|. .. ...+.|.++.+++.
T Consensus 241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 77788888888888764210 110 00 12356889999885
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=151.95 Aligned_cols=327 Identities=17% Similarity=0.167 Sum_probs=204.4
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccC
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|+-+- .+--+..++++++.++.-...-|+ .++...+|.+..++.+ +.|..+|++|||.+|..+++. ....
T Consensus 23 ~vDLRSD----TvT~PTdeMr~am~eA~vgDdVyG-eD~tt~rLE~~vA~l~-GKEAgLFv~SGTmgNllaIm~--Hc~~ 94 (384)
T KOG1368|consen 23 SVDLRSD----TVTVPTDEMRRAMAEASVGDDVYG-EDPTTNRLEQRVAELF-GKEAGLFVPSGTMGNLLAIMV--HCHQ 94 (384)
T ss_pred ccccccc----cccCChHHHHHHHhhcccCccccc-CCccHHHHHHHHHHHh-CccceeeecccccccHHHHHH--HhcC
Confidence 3455553 333456788888888754433343 4455567777777777 889999999999999999995 3333
Q ss_pred C-ceEEEEeC-CCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc-----CCCCeEEEEE
Q 011856 181 R-ERIIKFEG-CYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-----NKGEIAAIIL 252 (476)
Q Consensus 181 ~-~~ii~~~~-~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ 252 (476)
+ ..||+-+. ..|-|-.+.+.. +|..+..+ .+...+ +-|++++|+.+.. |.+.+++|.+
T Consensus 95 rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv-~~e~dg-------------tm~ledIe~~ir~~~GD~H~p~T~LIcl 160 (384)
T KOG1368|consen 95 RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTV-KNENDG-------------TMDLEDIEAAIRVPKGDCHMPPTKLICL 160 (384)
T ss_pred CCceEEeccchheeehhccChhhhccceeEee-eeCCCC-------------eeeHHHHHHhhcCCCCCccCCCceEEEe
Confidence 3 34444322 233332222221 11111100 011111 1169999999973 2346789999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--cccccchhhccCCCCch--hhhhhhcCCCCcEEEE-Ee
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAY-GG 327 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pDi--~t~sK~lg~G~~iG~~-~~ 327 (476)
|..+++.|....|-+|+.++.+||++||+.|.+|-+.. | -....-....+.-..|- +||||++|+ |+|-+ ++
T Consensus 161 ENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSViVG 237 (384)
T KOG1368|consen 161 ENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSVIVG 237 (384)
T ss_pred eccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccEEEc
Confidence 99988866566677889999999999999999997653 1 00011111222222343 489999987 88877 88
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i 406 (476)
++++++..+..++. .++.+-.+-+.++||+.+|+. .-..+.+-.++...+.+.++... .+..+++ -...|..+
T Consensus 238 ~k~FI~kA~~~RKa-lGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~~---~i~v~v~a~etNiv~~ 311 (384)
T KOG1368|consen 238 SKDFIDKARHFRKA-LGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTPE---EIRVEVPAVETNIVNM 311 (384)
T ss_pred cHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcccc---ceeeecchhhcceeee
Confidence 99998765422122 334445566777788877762 22355555666666666666321 1444454 45667777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
.+..... ..+++.+.+.++||++.++.....|+ ....|+++++.++..|.+.
T Consensus 312 ~l~q~~~------------~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 312 VLCQARL------------TAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred ecccccC------------CHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHH
Confidence 7654322 23688899999999988775444555 5677999999999999543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-17 Score=164.43 Aligned_cols=325 Identities=15% Similarity=0.101 Sum_probs=183.7
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC---C--CCHHHHHH----HHHHHhhCCC-CCeEEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---A--PCLLENVL----AEMVISAVPS-IEMVRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~---~--~~~~~~~l----a~~l~~~~~~-~e~v~~~~sGse 166 (476)
+.+|++.++- ++ -+|+|.+++.+.+... .... + ..+...++ .+.++++++. ...+ +++||++
T Consensus 25 ~~~~~l~~~~--n~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i-~~~sgt~ 98 (416)
T PRK00011 25 EEHIELIASE--NF---VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANV-QPHSGSQ 98 (416)
T ss_pred hcCeeeeccc--Cc---CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceee-ecCCchH
Confidence 4557777663 22 4899999987765321 1111 0 11222233 3367777752 3334 4457899
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhH--HhhcC--CCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAG--SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
|+..+++.. ..+++.|++....|.+..... ....+ ..+... +.... . -..|++++++.+++
T Consensus 99 al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~--------~---~~~d~~~l~~~i~~ 163 (416)
T PRK00011 99 ANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSY--GVDEE--------T---GLIDYDEVEKLALE 163 (416)
T ss_pred HHHHHHHHh--cCCCCEEEEeccccCCccccccccccccceeeEeec--CcCcc--------c---CCcCHHHHHHHHHh
Confidence 999988842 345667887777765432111 11111 111110 10000 0 01279999999975
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCC
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
+ ++++|++.. ++.|...+ +++|.++|++||+++|+||+| .|+ ..|.. ....+ ..|++ +++|++ +
T Consensus 164 ~--~~k~v~~~~--~~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~--~~~~~-~~di~~~S~~K~l-~ 231 (416)
T PRK00011 164 H--KPKLIIAGA--SAYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH--PSPVP-HADVVTTTTHKTL-R 231 (416)
T ss_pred c--CCCEEEECC--CcCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc--CCCCC-CCcEEEecCCcCC-C
Confidence 3 455666642 22344455 899999999999999999998 454 32211 11122 34655 689998 4
Q ss_pred CCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHH-HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 319 GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAG-IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 319 G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa-~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
|+++|+++++ +++++.++........++ .....+++. .+.++.+++ ++..++++++.+++++.|++++ ..+.
T Consensus 232 g~~gg~i~~~~~~~~~~l~~~~~~~~~~~--~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~ 307 (416)
T PRK00011 232 GPRGGLILTNDEELAKKINSAVFPGIQGG--PLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG--FRVV 307 (416)
T ss_pred CCCceEEEeCCHHHHHHHHHHhCccccCC--ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC--Ceee
Confidence 6889999885 688887753211111111 122233333 333343332 5567888888899998888742 1111
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEe------CCCcHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTS------LAHSSD 458 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~------~~~t~e 458 (476)
. -.....++++.+.+.. ....++.+.|.++||.+.... ...+|+. ..+|++
T Consensus 308 ~-~~~~~~~~~i~~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~ 374 (416)
T PRK00011 308 S-GGTDNHLVLVDLRSKG------------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEA 374 (416)
T ss_pred e-cCCCCeEEEEeCcccC------------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHH
Confidence 0 0123356666653210 012467788889999987321 1235653 256899
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 459 DIQHTITAAEKVKMR 473 (476)
Q Consensus 459 ~i~~~~~~l~~~~~~ 473 (476)
|++++++.|++++..
T Consensus 375 di~~l~~~l~~~~~~ 389 (416)
T PRK00011 375 EMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-17 Score=153.15 Aligned_cols=306 Identities=14% Similarity=0.104 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 137 PCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
....++++|+.+.+.-. +++++.++++++.|+++.+-. ...+++..++..+-|-|+....---+|..+.++..
T Consensus 123 l~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fc--LadpgdafLvPtPyY~gfdrdl~~rTgveivpv~c 200 (471)
T KOG0256|consen 123 LPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFC--LADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHC 200 (471)
T ss_pred chHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHH--hcCCCceeeecCCCCCcccccceeccCceEEEEEe
Confidence 45666677777665542 588999999999999988763 23456677777777777543333333333222211
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
....++ . -+.++||+++.+ .+.+++.||+...+|+-|.+.++++ |..+.+++.++++.||+||+
T Consensus 201 ~Ss~~f---------~---itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~-L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 201 SSSNGF---------Q---ITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEE-LISLLNFASRKNIHVISDEI 267 (471)
T ss_pred ecCCCc---------c---ccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHH-HHHHHHHHhhcceEEEeehh
Confidence 111111 0 058888888754 2346776666555566677776666 99999999999999999999
Q ss_pred ccCc-cccccc--hhhc---cCCCCchh----hhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHH
Q 011856 289 MTGF-RLAYGG--AQEY---FGVTPDLT----TLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 289 ~~g~-r~g~~~--~~~~---~g~~pDi~----t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
|+|- .....| ..+. ....||-+ ++||-|| .|+|+|.+.. ++++.....+ +..++ ..++..+.-
T Consensus 268 ya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~k---mssf~--~vSs~tQ~~ 342 (471)
T KOG0256|consen 268 YAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATK---MSSFG--LVSSQTQYL 342 (471)
T ss_pred hcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHH---Hhhcc--CCcHHHHHH
Confidence 9754 222111 1121 11245533 7999999 8999999955 6677776653 22222 345566655
Q ss_pred HHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHH
Q 011856 357 GIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (476)
Q Consensus 357 a~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (476)
....|.. .+. ++..++++.+.+++.++|+++ +++.--.+.|+|+|+++..--. .. ..+.-.+++
T Consensus 343 la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDlr~lL~-----s~--tfe~El~Lw 411 (471)
T KOG0256|consen 343 LASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL----GIPCLKSNAGLFCWVDLRKLLT-----SL--TFEGELELW 411 (471)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCceeecCCeeEEEEEhHHhcC-----cC--ChHHHHHHH
Confidence 5444431 111 344566666667777777765 5555567889999999854110 00 112224567
Q ss_pred HHHHHC-CeEeccCC------CcceEEeCCCcHHH-HHHHHHHHHHHHHH
Q 011856 432 RGMLEE-GVYFAPSQ------FEAGFTSLAHSSDD-IQHTITAAEKVKMR 473 (476)
Q Consensus 432 ~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~-i~~~~~~l~~~~~~ 473 (476)
+.++++ ++.+.|+. ++.+|++++...++ ++-++++|+..+..
T Consensus 412 ~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 412 ERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred HHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 777777 99999985 33567776665555 45499999988764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-17 Score=161.55 Aligned_cols=308 Identities=13% Similarity=0.087 Sum_probs=180.0
Q ss_pred cHHHHHHHHHHH-Hh-cCCCCC-----CCHHHHHHHH----HHHhhCCCCCeE-EEeCCHHHHHHHHHHHHHhccC-Cce
Q 011856 117 DDQVLAALGETM-KK-GTSFGA-----PCLLENVLAE----MVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTG-RER 183 (476)
Q Consensus 117 ~p~v~~a~~~~l-~~-~~~~~~-----~~~~~~~la~----~l~~~~~~~e~v-~~~~sGseA~~~al~~ar~~~~-~~~ 183 (476)
||.+++|+...+ .+ +..+++ -++...+|.+ .+++++ +.+.+ ++++||+.|+.+++.. +.+ ++.
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~-g~~~alv~~~SG~~A~~~~l~a---l~~~GD~ 116 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF-GCDYANVQPHSGSQANGAVYLA---LLKPGDT 116 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh-CCCceEEecCCcHHHHHHHHHH---hcCCCCE
Confidence 899999999985 44 221111 1466677777 888888 55667 4579999999999984 444 455
Q ss_pred EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC------CCHHHHHHHHhcCCCCeEEEEE-cccC
Q 011856 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF------NDVSALENLFENNKGEIAAIIL-EPVV 256 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~a~vi~-ep~~ 256 (476)
|++...++.+......... ..+. ..+...+++ .|++++++.++.. ++++|++ ++++
T Consensus 117 Vl~~~~~~~~~~~~g~~~~-----------~~~~----~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~klVi~~~~~~ 179 (416)
T PRK13034 117 ILGMSLSHGGHLTHGAKVS-----------LSGK----WYNAVQYGVDRLTGLIDYDEVEELAKEH--KPKLIIAGFSAY 179 (416)
T ss_pred EEEcCccceeeeecCCcce-----------eccc----eeeeEEcccccccCCcCHHHHHHHHhhc--CCeEEEECCCcc
Confidence 5554444433111000000 0000 000012222 5899999998653 4567777 4554
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHH-H
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRD-I 331 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~-i 331 (476)
+ ...+ +++|.++|++||++||+|++| .|. ..|... ..++ ..|++ +++|+++|+ ..|+++++++ +
T Consensus 180 g---~~~d----l~~l~~la~~~g~~livD~Aha~G~~~~g~~~--~~~~-~~Di~~~s~~K~l~g~-~GG~v~~~~~~~ 248 (416)
T PRK13034 180 P---RELD----FARFREIADEVGALLMVDMAHIAGLVAAGEHP--NPFP-HAHVVTTTTHKTLRGP-RGGMILTNDEEI 248 (416)
T ss_pred c---cccC----HHHHHHHHHHcCCEEEEeCcccccCcccCCCC--CCCC-CceEEEEeCcccCCCC-CCeEEEECcHHH
Confidence 3 4445 889999999999999999999 454 333211 1111 25665 688999653 2566666654 4
Q ss_pred HHhhcCCCCccccCCCCCcHHHHH-HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 332 MEMVAPAGPMYQAGTLSGNPLAMT-AGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 332 ~~~l~~~~~~~~~~t~~~~~~~~a-aa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
.+.++.. .+.+.+-+..+...+ ++.+.++.++. +++.+++.++.++|+++|++++.+ +... .....++.+.+
T Consensus 249 ~~~~~~~--~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~--~~~~-~~~t~i~~v~~ 323 (416)
T PRK13034 249 AKKINSA--VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYD--LVSG-GTDNHLLLVDL 323 (416)
T ss_pred HHHHHhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCE--eccC-CCCCcEEEEEc
Confidence 4444421 111111112233333 33444554432 345789999999999999876322 1100 12345556665
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC------CC----cceEEe--C----CCcHHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS------QF----EAGFTS--L----AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~~----~~~~~~--~----~~t~e~i~~~~~~l~~~~~ 472 (476)
.+... ....+.+.|.++||++.+. .+ ..+|++ . .++++|++++++.|++++.
T Consensus 324 ~~~~~------------~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 324 RPKGL------------SGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred CCCCC------------CHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 43211 1234557788889999752 11 235653 3 7789999999999998875
Q ss_pred H
Q 011856 473 R 473 (476)
Q Consensus 473 ~ 473 (476)
.
T Consensus 392 ~ 392 (416)
T PRK13034 392 D 392 (416)
T ss_pred c
Confidence 3
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=162.14 Aligned_cols=255 Identities=16% Similarity=0.125 Sum_probs=155.7
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~-~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~ 168 (476)
+.|+|..+. +..++.|.+++.+.+.... ... .+ .+...++.+.++++++ +.++++|++|+++++
T Consensus 4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 468887654 2358999999988875421 111 11 1334567788888886 567999999999999
Q ss_pred HHHHHHHHh-c-cCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLARA-F-TGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..+++.... . .+++.|++... .|........ ..|..+..++... .+ ..|++++++.+++
T Consensus 78 ~~~l~~l~~~~~~~g~~Vi~~~~-~h~s~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~l~~- 141 (402)
T TIGR02006 78 NLAIKGIAHFYKSKGNHIITSKT-EHKAVLDTCRYLEREGFEVTYLPPKS-NG-------------LIDLEELKAAIRD- 141 (402)
T ss_pred HHHHHHHHHhhcCCCCEEEECCC-ccHHHHHHHHHHHhcCCEEEEEccCC-CC-------------cCCHHHHHHhcCC-
Confidence 999875432 2 23455555544 4544332221 1233222211110 01 0178999988864
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCCc
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLP 321 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~ 321 (476)
++++|++..+++++|.+.| +++|.++|++||+++|+|++|+ + |.. ..+..+..+|++++| |.+| ...
T Consensus 142 --~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~--g~~-~~~~~~~~~D~~~~s~~K~~g-p~G 210 (402)
T TIGR02006 142 --DTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-V--GKI-PINVNELKVDLMSISGHKIYG-PKG 210 (402)
T ss_pred --CCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-c--CCc-ccCccccCCCEEEEehhhhcC-CCc
Confidence 5778888888888999998 9999999999999999999995 1 111 112223457888877 9765 223
Q ss_pred EEEEEecHHHHHhhcCCCC---c-cccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 322 VGAYGGRRDIMEMVAPAGP---M-YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~---~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
+|+++.+++....+.+... . ......+.+.....+..++++.+.+ +...++.+++.+++++.|++
T Consensus 211 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 281 (402)
T TIGR02006 211 IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS 281 (402)
T ss_pred eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 8998888765443332100 0 0011123455556666677877654 33445555666666666554
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-18 Score=167.94 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+++++++ +.+.+++++||++|+..++... ...++.|++.++.|.+. ...+.... .
T Consensus 74 ~~Pt~~~LE~~lA~l~-g~~~~l~~~sG~~Ai~~al~al--~~~GD~Vl~~~~~Y~~~-~~~~~~~~--------~---- 137 (418)
T PLN02242 74 FNPTVLNLGRQMAALE-GTEAAYCTASGMSAISSVLLQL--CSSGGHVVASNTLYGGT-HALLAHFL--------P---- 137 (418)
T ss_pred CChhHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEcCCcHHHH-HHHHHHhh--------h----
Confidence 5777889999999988 6788899999999999999842 34567777777666443 22221100 0
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
+..+..+..++..|+++++++++.. ++++|++|.++|++|.+.+ +++|.++|++||++||+||+|+.+...
T Consensus 138 --~~~G~~~~~~d~~d~e~l~~~i~~~--~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~~~- 208 (418)
T PLN02242 138 --RKCNITTTFVDITDLEAVKKAVVPG--KTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMVLS- 208 (418)
T ss_pred --hccCceEEEcCCCCHHHHHHhcCcC--CCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccCCC-
Confidence 0011124445556899999988642 4789999988888999887 999999999999999999999644211
Q ss_pred cchhhccCCCCchh--hhhhhcCC-CCc-EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYE 371 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G~~-iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~ 371 (476)
...+| .|++ ++||.+++ |++ +|++++++++++.+....... ....+.++..+.|++..+. +.. +..++
T Consensus 209 ---~~~~g--~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~-~~~~g~~~~~~~A~l~~~~-l~tl~~r~~ 281 (418)
T PLN02242 209 ---PARLG--ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA-LMLLGPTMNPKVAFELSER-LPHLSLRMK 281 (418)
T ss_pred ---HHHcC--CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh-hhccCCCCCHHHHHHHHcC-CCcHHHHHH
Confidence 11223 4554 79999984 676 588899999888876321110 0122333334445444432 222 44567
Q ss_pred HHHHHHHHHHHHHHHHhhh--cCC-ce---------Ee---eeeceeEEEEEe
Q 011856 372 YLNKITGELTQGIIDAGKK--AGH-AI---------CG---GYISGMFGFFFT 409 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~--~~~-~~---------~v---~~~g~~~~i~~~ 409 (476)
+.+++.+++.+.|++...+ +|. .. .. .+.|.|+.|++.
T Consensus 282 ~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~ 334 (418)
T PLN02242 282 EHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD 334 (418)
T ss_pred HHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC
Confidence 7888889999998876321 111 00 11 367889999984
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=159.99 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHHHhc-----------cCCceEEEEeCCCCCCchhHHhhcC
Q 011856 138 CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ar~~-----------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
.+++++++++++++++. .+.++|++||++|+..+++.++.. .+.+.+|+.....|......+...|
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g 116 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence 57778888888888752 347999999999999999977542 1234466666667766555544444
Q ss_pred CCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
..+...+.... + .-|+++|++.+++ .+.++++|++...++++|.+.+ +++|.++|++||
T Consensus 117 ~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~ 178 (345)
T cd06450 117 VKVRLVPVDED-G-------------RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYD 178 (345)
T ss_pred cCeEEeeeCCC-C-------------CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhC
Confidence 43333221111 1 1289999999874 1224556665555566888877 999999999999
Q ss_pred CEEEEeccccCc-cccccchhhccCC-CCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHH
Q 011856 281 ALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
++|++|++|.++ ...........+. ..|.+ +++|.+++++++|+++.+ .+++.+
T Consensus 179 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------~~~~~~ 236 (345)
T cd06450 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------ALKLWA 236 (345)
T ss_pred CeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------HHHHHH
Confidence 999999999654 2111100001111 24543 688988777777776544 233333
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
++..+....-++..++..++.+++.+.|.++. ++.......+.++.+.+.... + ......++.+.|.+
T Consensus 237 ~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~iv~f~~~~~~--~-------~~~~~~~i~~~L~~ 304 (345)
T cd06450 237 TLRRFGRDGYGEHIDRIVDLAKYLAELIRADP---GFELLGEPNLSLVCFRLKPSV--K-------LDELNYDLSDRLNE 304 (345)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCceeEEEEEECCcc--h-------hhHHHHHHHHHHHh
Confidence 33333211114566677777777777776541 111111123455555553210 0 01223578888999
Q ss_pred CCeEeccCC----CcceEEeC--CC-cHHHHHHHHHHHHH
Q 011856 437 EGVYFAPSQ----FEAGFTSL--AH-SSDDIQHTITAAEK 469 (476)
Q Consensus 437 ~Gv~~~~~~----~~~~~~~~--~~-t~e~i~~~~~~l~~ 469 (476)
+|+++.+.. ...+|+++ .+ |++|+|++++.|++
T Consensus 305 ~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 305 RGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred cCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 965544321 23567653 33 99999999999876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-16 Score=154.42 Aligned_cols=322 Identities=16% Similarity=0.140 Sum_probs=184.5
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHH---hhCC--CCCeEEEeCCHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVI---SAVP--SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~---~~~~~~~~la~~l~---~~~~--~~e~v~~~~sGseA~~~ 170 (476)
|+|..++ ...++.|.+++.+.+... ...+ ++......+.+.+. +.++ .+++|+|++|++|++..
T Consensus 2 yld~aa~------~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNAT------TMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCC------CCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 5565544 235789999999888752 1111 11122223333333 2332 36899999999999999
Q ss_pred HHHHHHh--c-cC-CceEEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 171 VLRLARA--F-TG-RERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 171 al~~ar~--~-~~-~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
+++.... + .+ ++.|++....+....... +...|..+..++.... +. -|++++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~-g~-------------~d~~~l~~~i~~-- 139 (382)
T TIGR03403 76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ-GT-------------ITAEQVREAITE-- 139 (382)
T ss_pred HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC-CC-------------CCHHHHHHhccc--
Confidence 9985321 1 23 345666554333322221 1222332222111100 10 178899988864
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCCcE
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPV 322 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~i 322 (476)
++++|++..+++++|.+.| +++|.++|++||+++|+|++|. + |.. ..+......|++++| |.+|. -.+
T Consensus 140 -~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~--g~~-~~~~~~~~~D~~~~s~~K~~gp-~G~ 209 (382)
T TIGR03403 140 -KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-I--GKI-PVDVQKAGVDFLSFSAHKFHGP-KGV 209 (382)
T ss_pred -CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-c--CCC-ccCccccCCCEEEEcchhhCCC-Cce
Confidence 4677888878888999999 8999999999999999999985 1 110 111112346777655 96552 126
Q ss_pred EEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 323 GAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
|++..+++. .+.+. .........+.|.+++.++.++++.+.+ +...++.+++.+++.++|.++ +.+..
T Consensus 210 g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----~~~~~ 283 (382)
T TIGR03403 210 GGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL----PDVFV 283 (382)
T ss_pred EEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CCEEE
Confidence 888766653 11110 0000011344677777777778876543 333455555666666665542 21111
Q ss_pred eee----eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------Ccce
Q 011856 397 GGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAG 449 (476)
Q Consensus 397 v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~ 449 (476)
+.. .+.++.+.+... ....+...|.++||.++.+. ...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i 349 (382)
T TIGR03403 284 VGDREHRVPNTILISIKGV--------------EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI 349 (382)
T ss_pred ECCCCCCcCCEEEEEeCCC--------------CHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence 111 123444444210 12456667888999998531 1236
Q ss_pred EEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|++ ..+|++|||+++++|+++++++
T Consensus 350 R~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 350 RLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 764 5679999999999999988754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=161.03 Aligned_cols=285 Identities=16% Similarity=0.110 Sum_probs=178.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.+++++ +.+..++++||+.|+..++... ...++.|++..+.| +.+...+..... ..
T Consensus 58 ~~~pt~~~Le~~lA~l~-G~~~al~~~sG~~Ai~~~l~al--~~~Gd~Vv~~~~~y-~~~~~~~~~~~~---------~~ 124 (386)
T PRK06767 58 LGNPTVKLFEERMAVLE-GGEEALAFGSGMAAISATLIGF--LKAGDHIICSNGLY-GCTYGFLEVLEE---------KF 124 (386)
T ss_pred CCCcchHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCcH-HHHHHHHHHHHh---------hc
Confidence 35666788999999888 4567888899999998888632 33456666665544 434333322111 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
++ ++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 125 gi------~~~~~~~~d~~~l~~~i~~---~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~ 191 (386)
T PRK06767 125 MI------THSFCDMETEADIENKIRP---NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSPYLQ 191 (386)
T ss_pred Ce------EEEEeCCCCHHHHHHhhCc---CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 11 1223344578999988863 5788999888888999988 999999999999999999999421111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
... ..| .|++ +++|.+++ |.++ |+++++++.++.+........++ ..+|+.+.+++..|+.+ +..++
T Consensus 192 ~pl---~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~--~~~~~~a~l~~~~L~tl--~~r~~ 262 (386)
T PRK06767 192 RPL---ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG--IMAPFDAWLLLRGLKTL--AVRMD 262 (386)
T ss_pred Cch---hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC--CCCHHHHHHHHcCCCcH--HHHHH
Confidence 111 123 3655 68899986 7775 77888988776653110111122 23566655555554432 34556
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCce------------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAI------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~------------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (476)
+.+++..++.+.|++. +.+. ..++.|.|+.|++.+. .+...+|.+.|...++
T Consensus 263 ~~~~~a~~la~~L~~~----p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~------------~~~~~~f~~~l~~~~~ 326 (386)
T PRK06767 263 RHCDNAEKIVSFLKNH----DAVEGVWYPEGELASRQMKRGGGVISFSIKGG------------KEETQAFINDLHFITI 326 (386)
T ss_pred HHHHHHHHHHHHHHcC----CCccEEECCCcHHHHHhCCCCCceEEEEEcCC------------HHHHHHHHHhCCccEE
Confidence 7778888888887764 2111 1235688888888521 2234577777776665
Q ss_pred EeccCCCcc---------------------------eEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 440 YFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 440 ~~~~~~~~~---------------------------~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.-++... +|++... ||.+.+++-|+++++.
T Consensus 327 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~~ 385 (386)
T PRK06767 327 AVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQALKK 385 (386)
T ss_pred ecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 554443221 3444333 5677778888877764
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=157.22 Aligned_cols=247 Identities=16% Similarity=0.103 Sum_probs=154.0
Q ss_pred CCCcHHHHHHHHHHHHhcC--CCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHh-c-cCC
Q 011856 114 GHADDQVLAALGETMKKGT--SFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-TGR 181 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~~--~~~-~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~-~-~~~ 181 (476)
+..++.+.+++.+.+.... ... .+ .+...++.+.++++++ ..+.++|++|+++++..++..+.. + .++
T Consensus 9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g 88 (364)
T PLN02651 9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKK 88 (364)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCC
Confidence 3468899999988875421 111 11 2335677888888886 467899999999999999876532 2 345
Q ss_pred ceEEEEeCCCCCCchhHHh--hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++|++.+..|+........ ..|..+...+... .+ .-|++++++.+++ ++++|++..+++.+
T Consensus 89 ~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~i~~---~t~lv~v~~~~n~t 151 (364)
T PLN02651 89 KHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS-DG-------------LVDLDELAAAIRP---DTALVSVMAVNNEI 151 (364)
T ss_pred CEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC-CC-------------cCCHHHHHHhcCC---CcEEEEEECCCCCc
Confidence 5666655444442222221 1222221111110 01 0178999999864 57888888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHHHHhhcC
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
|.+.| +++|.++|++||+++++|.+|+. |. ...+.-....|++++ -| +++...+|++..+++..+.+.+
T Consensus 152 G~~~~----l~~I~~~~~~~g~~~~vD~a~~~---g~-~~~~~~~~~~D~~~~s~hK-~~gp~G~g~l~v~~~~~~~l~p 222 (364)
T PLN02651 152 GVIQP----VEEIGELCREKKVLFHTDAAQAV---GK-IPVDVDDLGVDLMSISGHK-IYGPKGVGALYVRRRPRVRLEP 222 (364)
T ss_pred eeccc----HHHHHHHHHHcCCEEEEEcchhh---CC-cccCcccCCCCEEEechhh-hCCCCceEEEEEcCCCCCCCCc
Confidence 99999 99999999999999999999951 11 111112234587754 48 4443458999888876665543
Q ss_pred CCCc----cccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 338 AGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 338 ~~~~----~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
.... ...-..+.|..++.+..++|+.+.+ ++..++.+++.+++++.|.+
T Consensus 223 ~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~ 277 (364)
T PLN02651 223 LMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA 277 (364)
T ss_pred cccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0011223466677777788887764 44556666666666666654
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-16 Score=155.53 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=192.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
.++..+++.+.+..+..++ ..+...++++.+++++ +.+++++++||++|+..+++.. ...+++.||+...+|.+...
T Consensus 10 ~~~e~~a~~~~~~~~~~~~-~g~~~~~~e~~la~~~-g~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~~~ 86 (376)
T TIGR02379 10 TGQELEYIAEAISEGKLSG-DGPFSRRCETWLENRT-GTKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTAN 86 (376)
T ss_pred CHHHHHHHHHHHHcCCccC-CcHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 3556888888887754332 3556788888888887 6789999999999999988742 24566788888888776433
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
. +...|..+...+.... +. --|++++++.++. ++++|+ |++ ..|...+ +++|.++|
T Consensus 87 ~-~~~~G~~~v~vd~d~~-~~------------~~d~~~le~~i~~---~tk~Ii--p~~-~~G~~~d----~~~I~~la 142 (376)
T TIGR02379 87 A-FVLRGAKIVFVDIRPD-TM------------NIDETLIESAITH---RTKAIV--PVH-YAGVACD----MDTIMALA 142 (376)
T ss_pred H-HHHcCCEEEEEecCCC-cC------------CCCHHHHHHhcCc---CceEEE--EeC-CCCCccC----HHHHHHHH
Confidence 3 3334443332222111 00 0178899998864 566665 333 3566676 89999999
Q ss_pred HHhCCEEEEeccccCccccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcCC---CCc-------
Q 011856 277 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPA---GPM------- 341 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~~---~~~------- 341 (476)
++||++||.|++|+-... +.....|..-|+.+|| |.+..|.+.|+++.+ +++.+.++.. +..
T Consensus 143 ~~~~i~vIeDaa~~~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (376)
T TIGR02379 143 NKHQLFVIEDAAQGVMST---YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRG 219 (376)
T ss_pred HHCCCEEEEECccccCCc---cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCcccccc
Confidence 999999999999962210 0011223334777888 999988889998665 7777766521 100
Q ss_pred --------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-CceEeeeeceeEEEEE
Q 011856 342 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAICGGYISGMFGFFF 408 (476)
Q Consensus 342 --------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~~v~~~g~~~~i~~ 408 (476)
..+..+-.+.+.++.+++.|+.+ ++..++-+++.+++.+.|..+.. ..+ .+......-.++.+.+
T Consensus 220 ~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (376)
T TIGR02379 220 EVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKL 297 (376)
T ss_pred CCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEE
Confidence 01223344566667777777765 44666666777777777765421 111 0101111112333443
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------C---------------cceEEe--CCCcHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------F---------------EAGFTS--LAHSSDDI 460 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------~---------------~~~~~~--~~~t~e~i 460 (476)
... ...+++.+.|.++||..+... . ..++++ ...|++|+
T Consensus 298 ~~~-------------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~ 364 (376)
T TIGR02379 298 KDE-------------DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQ 364 (376)
T ss_pred CCc-------------CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHH
Confidence 210 113688899999999765211 0 013443 45799999
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
+..++.+++++
T Consensus 365 ~~i~~~i~~~~ 375 (376)
T TIGR02379 365 ARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-16 Score=154.23 Aligned_cols=311 Identities=15% Similarity=0.114 Sum_probs=188.1
Q ss_pred CcHHHHHHHHHHHHhcC---CC-CCC-----CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 116 ADDQVLAALGETMKKGT---SF-GAP-----CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~---~~-~~~-----~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
.++.+.+++.+.+++.. .+ .++ .....++.+.+++++. ..++|+|++|+++++..++.. ....++.|
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~--~~~~gd~v 89 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG--LLKEGDHV 89 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh--ccCCCCEE
Confidence 46789999988887631 11 122 1445678888888875 235899999999999998874 23455677
Q ss_pred EEEeCCCCCCchhHH---hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 185 IKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 185 i~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
++....|........ ...|..+...+... .+ ..|++++++.+++ ++++|++..+++++|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~~~~---~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 90 ITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EG-------------LISPERIKRAIKT---NTKLIVVSHASNVTGT 152 (376)
T ss_pred EECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CcCHHHHHHhcCC---CCeEEEEECCCCCccc
Confidence 776655444322211 11233222211110 00 1278999998853 5777888888888999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH-HHhhcC
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAP 337 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i-~~~l~~ 337 (476)
+.+ +++|.++|+++|+++|+|++|+ |.. .+..+. ..+|++ ++.|.+++.-..|+++.+++. +..+..
T Consensus 153 ~~~----~~~i~~l~~~~~~~livD~a~~~g~~---~~~~~~--~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 153 ILP----IEEIGELAQENGIFFILDAAQTAGVI---PIDMTE--LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred cCC----HHHHHHHHHHcCCEEEEEhhhccCcc---CCCchh--cCCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 998 8999999999999999999995 221 011111 245766 456988753346777555543 222111
Q ss_pred CCCcc-------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCce--Eeee
Q 011856 338 AGPMY-------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGY 399 (476)
Q Consensus 338 ~~~~~-------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~ 399 (476)
.+... .+...+.+...+.+..++++.+.+ +...++.+++.+++++.|.+... ..+.. +...
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~ 302 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINK-VKIYGPADPAN 302 (376)
T ss_pred CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCCCccc
Confidence 10000 001113456666777778887765 34567777777777777765321 10100 0011
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC--------------CcceEEe--CCCcHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------------FEAGFTS--LAHSSDDIQH 462 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--------------~~~~~~~--~~~t~e~i~~ 462 (476)
.+.++.+.+... ...++.+.|.++ ||.+..+. ...+|++ ..+|++|+++
T Consensus 303 ~~~~v~~~~~~~--------------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~ 368 (376)
T TIGR01977 303 RVGVVSFTVEGI--------------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK 368 (376)
T ss_pred cCCeEEEEECCC--------------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH
Confidence 244555554211 125678888887 98886542 2346764 6779999999
Q ss_pred HHHHHHH
Q 011856 463 TITAAEK 469 (476)
Q Consensus 463 ~~~~l~~ 469 (476)
++++|++
T Consensus 369 ~~~~l~~ 375 (376)
T TIGR01977 369 LLEALSE 375 (376)
T ss_pred HHHHHhh
Confidence 9999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=156.03 Aligned_cols=254 Identities=19% Similarity=0.188 Sum_probs=151.3
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHH--hc--CCCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMK--KG--TSFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~--~~--~~~~-~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGse 166 (476)
+.|+|..+. +..++.+.+++.+.+. .. .... .. .+...++.+.++++++ +.++++|++||++
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 356775543 3468899999988875 21 1110 00 1334567788888886 4578999999999
Q ss_pred HHHHHHHHHHh--ccCCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 167 ACMGVLRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 167 A~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
++..+++.... ...++.|++....|+......... .|..+...+... .+. -|+++|++.+++
T Consensus 78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~-------------~d~~~l~~~i~~ 143 (404)
T PRK14012 78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS-NGI-------------IDLEKLEAAMRD 143 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-CCc-------------CCHHHHHHhcCC
Confidence 99999875432 234566666655554432222211 233222211110 110 178999999864
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCCCC
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGL 320 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~ 320 (476)
++++|++..+++++|.+.+ +++|.++|+++|+++|+|++|+ + |.. ..+.....+|++++| |.+|++
T Consensus 144 ---~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~--g~~-~~~~~~~~~D~~~~s~~K~~gp~- 211 (404)
T PRK14012 144 ---DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-V--GKV-PIDLSKLKVDLMSFSAHKIYGPK- 211 (404)
T ss_pred ---CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-c--CCc-ccCcccCCCCEEEEehhhccCCC-
Confidence 5778888888888999998 9999999999999999999995 1 111 011112347877655 977643
Q ss_pred cEEEEEecHHHHHhhcCC--C----CccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPA--G----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~--~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
.+|+++.+++....+.+. + ..+..+| .+.....+..++++.++. ++..++.+++.+++.+.|++
T Consensus 212 g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~ 283 (404)
T PRK14012 212 GIGALYVRRKPRVRLEAQMHGGGHERGMRSGT--LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD 283 (404)
T ss_pred ceEEEEEecCCCCCCCceecCCCccCCccCCC--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 589988776643333210 0 0011122 233333344455554432 34556666666666666654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-16 Score=154.88 Aligned_cols=299 Identities=15% Similarity=0.095 Sum_probs=182.3
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh
Q 011856 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 122 ~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
+++.+.+.++.. +..+...++.+.+++++ +.+++++++||++|++.+++..+ ...++.|++...+||+.... +..
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~-~~~~~~~~~sgt~al~~~l~~l~-~~~gd~vl~~~~~~~~~~~~-~~~ 77 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYL-GVKYAVAVSSGTAALHLALRALG-IGPGDEVIVPSFTFVATANA-ILL 77 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHH-HHH
Confidence 566677766432 34556778888888888 45789999999999999998532 24567888888888775433 333
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 011856 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (476)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (476)
.|..+...+..... ...|++++++.++. ++++|++.+ ..|...+ +++|+++|+++|+
T Consensus 78 ~g~~~~~~~~~~~~-------------~~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~i 134 (352)
T cd00616 78 LGATPVFVDIDPDT-------------YNIDPELIEAAITP---RTKAIIPVH---LYGNPAD----MDAIMAIAKRHGL 134 (352)
T ss_pred cCCeEEEEecCCCc-------------CCcCHHHHHHhcCc---CCeEEEEEC---CCCCcCC----HHHHHHHHHHcCC
Confidence 34332221111000 01278999988853 567777654 3566666 8999999999999
Q ss_pred EEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcC---CCCc---------c
Q 011856 282 LLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM---------Y 342 (476)
Q Consensus 282 llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~---~~~~---------~ 342 (476)
+||+|++|+ |. ..+ ...+...|+.++| |.+++| +.|+++.+ +++.+.+.. .+.. .
T Consensus 135 ~li~D~a~~~g~~~~~-----~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T cd00616 135 PVIEDAAQALGATYKG-----RKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEI 208 (352)
T ss_pred eEEEECCCCCCCeECC-----EEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccce
Confidence 999999995 32 111 1123234655544 999643 56777665 577665432 1110 0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee---eeceeEEEEEecCCCcCchhh
Q 011856 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~ 419 (476)
...++..+++.++.++..++.+ +...++.+++.+++++.|.++. ...+..... ....++.+.+.+..
T Consensus 209 ~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~------- 278 (352)
T cd00616 209 LGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPEA------- 278 (352)
T ss_pred eeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCcC-------
Confidence 1123345677777776665544 4567778888888888887641 111111111 12334444443100
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe--CCCcHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
.....++.+.|.++||.+..... ..++++ ...|++|++.++++|+
T Consensus 279 ----~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 279 ----GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ----CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 11235788899999996642211 134554 4579999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-15 Score=149.84 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=137.9
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCccccccchhhccC--CCCc
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFG--VTPD 308 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g~~~~~~~~g--~~pD 308 (476)
|.+++++++++ .+..|++....+.++ ..| +++|+++|++||++|++|++| .|+..+..+. +.++ -..|
T Consensus 208 D~d~l~~~~~~---~~plvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~-~~~~~~~~~D 278 (493)
T PRK13580 208 DYDEIAALARE---FKPLILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHFAGLVAGKVFT-GDEDPVPHAD 278 (493)
T ss_pred CHHHHHHHHhh---cCCEEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchhhceeccccch-hhcCCCCCCc
Confidence 78999999975 344555555544444 667 999999999999999999999 5662222221 1111 1357
Q ss_pred hh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Q 011856 309 LT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQG 383 (476)
Q Consensus 309 i~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~ 383 (476)
++ |++|+|.| -+.|++++++++.+.+....+ +.+++ ..+|..++++. ++..+.++ ++.+++.++.++|++.
T Consensus 279 ~vtgT~hKaL~G-P~GG~I~~~~~l~~~L~~a~P-~i~gg-~l~p~iAA~av-Al~e~~~~ef~~y~~~l~~Na~~La~~ 354 (493)
T PRK13580 279 IVTTTTHKTLRG-PRGGLVLAKKEYADAVDKGCP-LVLGG-PLPHVMAAKAV-ALAEARTPEFQKYAQQVVDNARALAEG 354 (493)
T ss_pred EEEeCChhhccC-CCeEEEEecHHHHHHHhhCCC-cccCC-CccHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 65 68899954 246788889999988854333 33333 33343333344 45555433 3789999999999999
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC----------cceEEe-
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS- 452 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~~~- 452 (476)
|.+.+.+. .. -.....++.+.+.+. ......+.+.|.+.||++.+... ..+|++
T Consensus 355 L~~~G~~v--v~-ggTdshIV~V~lg~~------------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~ 419 (493)
T PRK13580 355 FLKRGARL--VT-GGTDNHLVLIDVTSF------------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGT 419 (493)
T ss_pred HHhcCCCc--cC-CCCCCCEEEEEeCCH------------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEecc
Confidence 98864322 10 012345666666421 11223566788999999875432 235663
Q ss_pred -C----CCcHHHHHHHHHHHHHHHHH
Q 011856 453 -L----AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 453 -~----~~t~e~i~~~~~~l~~~~~~ 473 (476)
. .++++|++++++.|.++++.
T Consensus 420 ~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 420 PALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 56799999999999988763
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-16 Score=154.26 Aligned_cols=310 Identities=18% Similarity=0.176 Sum_probs=200.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCC---CC------CCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHHHh-ccCC
Q 011856 114 GHADDQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARA-FTGR 181 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~~~~---~~------~~~~~~~la~~l~~~~~-~~-e~v~~~~sGseA~~~al~~ar~-~~~~ 181 (476)
|..++.|.+++.+.+...... +. ..+...+..+.++++++ .. +.|+|++|++++++.++..... ..++
T Consensus 9 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g 88 (371)
T PF00266_consen 9 GPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPG 88 (371)
T ss_dssp -B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTT
T ss_pred cCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccc
Confidence 557899999999988752111 11 12445677788888886 44 6899999999999999996532 4677
Q ss_pred ceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
++|++....|++........ .|..+...+.+.. + .-|++++++.+. +++++|.+..+.+.
T Consensus 89 ~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~-~-------------~~~~~~~~~~l~---~~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 89 DEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG-G-------------SLDLEDLEEALN---PDTRLVSISHVENS 151 (371)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT-S-------------SCSHHHHHHHHH---TTESEEEEESBETT
T ss_pred cccccccccccccccccccccccchhhhcccccccc-c-------------hhhhhhhhhhhc---cccceEEeeccccc
Confidence 88988888887765333222 2333222111111 1 117899999997 37899999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHHHHhhc
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
+|.+.| +++|.++|+++|+++++|-+|+ + |.. ..+.-...+|++++ -| |+|+-.+|++..+++.++.+.
T Consensus 152 tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~--g~~-~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~ 222 (371)
T PF00266_consen 152 TGVRNP----IEEIAKLAHEYGALLVVDAAQS-A--GCV-PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLR 222 (371)
T ss_dssp TTBBSS----HHHHHHHHHHTTSEEEEE-TTT-T--TTS-S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHH
T ss_pred ccEEee----eceehhhhhccCCceeEechhc-c--ccc-cccccccccceeeecccc-cCCCCchhhheehhhhhhccc
Confidence 999999 9999999999999999999995 1 110 11112234687754 49 887666899999999988885
Q ss_pred CCCCccc------------------cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011856 337 PAGPMYQ------------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG-HA 394 (476)
Q Consensus 337 ~~~~~~~------------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 394 (476)
+...... +..-+.|.+...+...+++.+.+ ++..++..++.+++++.|.++..-.. .+
T Consensus 223 p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~ 302 (371)
T PF00266_consen 223 PAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGP 302 (371)
T ss_dssp TSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSS
T ss_pred cccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeee
Confidence 4211000 00002456666677778887743 55667777777777777776421100 01
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------------cceEEe--CCCcHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFTS--LAHSSDDI 460 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------------~~~~~~--~~~t~e~i 460 (476)
..-...+.++.+.+... ....+.+.|.++||.+..+.. ..+|++ ...|++||
T Consensus 303 ~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv 368 (371)
T PF00266_consen 303 DDEPRRPSIVSFNLPGS--------------DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDV 368 (371)
T ss_dssp SCGGBGTTEEEEEETTS--------------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHH
T ss_pred cccccccceEEEeecCC--------------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHH
Confidence 11233566667766321 125778888888999887421 356764 66799999
Q ss_pred HHH
Q 011856 461 QHT 463 (476)
Q Consensus 461 ~~~ 463 (476)
|++
T Consensus 369 ~~l 371 (371)
T PF00266_consen 369 DRL 371 (371)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=157.83 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|.+.++++. +.+.+++++||++|+..+++.. ...+++|++.. ..|+.+...+...-. ..
T Consensus 51 ~~~p~~~~le~~la~l~-g~~~~~~~~sG~~Ai~~al~al--~~~Gd~Vl~~~-~~~~~t~~~~~~~~~---------~~ 117 (380)
T TIGR01325 51 YANPTVAAFEERIAALE-GAERAVATATGMSAIQAALMTL--LQAGDHVVASR-SLFGSTVGFISEILP---------RF 117 (380)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEec-CCcchHHHHHHHHHH---------Hh
Confidence 45666788889898887 5578899999999999999742 33456676654 445544332211000 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ .++..++.+|++++++.++. ++++|++|.++++.|.+.+ +++|.++|+++|++||+||+|..+..
T Consensus 118 g------~~v~~v~~~d~~~l~~~i~~---~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~~- 183 (380)
T TIGR01325 118 G------IEVSFVDPTDLNAWEAAVKP---NTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPVL- 183 (380)
T ss_pred C------CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 1 13455666789999888863 5789999988888898888 99999999999999999999953210
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
.......+|++ +++|.+++ |.++ |++++++++++.++... ... ....+|..+..++..++.+ +...+
T Consensus 184 ----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~--~~~-g~~~~p~~a~~~l~~l~tl--~~r~~ 254 (380)
T TIGR01325 184 ----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL--RHT-GPAMSPFNAWVLLKGLETL--SLRMQ 254 (380)
T ss_pred ----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH--Hhh-CCCCCHHHHHHHHhccCcH--HHHHH
Confidence 11122346776 58999996 6665 66788888877765311 111 1234556655555555443 33556
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cCC-c---------eEeeeeceeEEEEEe
Q 011856 372 YLNKITGELTQGIIDAGK--K--AGH-A---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~~-~---------~~v~~~g~~~~i~~~ 409 (476)
+..++...+.+.|++... . +|. . ....+.|.|+.|++.
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 667777777777765320 0 111 1 012467889999985
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-16 Score=155.26 Aligned_cols=291 Identities=13% Similarity=0.069 Sum_probs=182.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++.+ .+.+++++||++|+..++.. ....++.|++..+.|.. +.......-
T Consensus 61 ~~~p~~~~Le~~iA~~~g-~~~~l~~~sG~~Ai~~al~~--ll~~Gd~Vl~~~~~y~~-~~~~~~~~~------------ 124 (400)
T PRK06234 61 LGNPTSTEVENKLALLEG-GEAAVVAASGMGAISSSLWS--ALKAGDHVVASDTLYGC-TFALLNHGL------------ 124 (400)
T ss_pred CCCccHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHH--HhCCCCEEEEecCccch-HHHHHHHHH------------
Confidence 356667889999998884 56789999999999988873 23455677776655543 333221100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCcc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFR 293 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r 293 (476)
...+.++..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++ |+++|+||+|....
T Consensus 125 ---~~~G~~v~~vd~~d~e~l~~~i~~---~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~~ 194 (400)
T PRK06234 125 ---TRYGVEVTFVDTSNLEEVRNALKA---NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTPY 194 (400)
T ss_pred ---hhCCeEEEEECCCCHHHHHHHhcc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCchh
Confidence 001123555566689999999864 5788999988888999888 99999999997 99999999995321
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
.+. ..+...|++ +++|.+++ |+++ |++++++++++.++....... .+...+|..+..++..|+.+ +..
T Consensus 195 ~~~-----~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~-~g~~l~p~~a~l~~~~l~tl--~~r 266 (400)
T PRK06234 195 IQR-----PLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDM-TGSVIGPFEAFLIIRGMKTL--QIR 266 (400)
T ss_pred cCC-----chhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHhccCcH--HHH
Confidence 111 112234655 68899985 7765 888999998887753111111 23456777777766665433 445
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcCC-c---------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~~-~---------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
.++..++..++.+.|++... .+|. . ....+.|.|+.|++... .+...+|.+.|.
T Consensus 267 ~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~------------~~~~~~f~~~l~ 334 (400)
T PRK06234 267 MEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG------------VEEGKVVMNNVK 334 (400)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc------------HHHHHHHHHhCC
Confidence 66667777777777764310 0110 0 01235678888888531 122355666655
Q ss_pred HCCeEeccCCC---------------------------cceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 436 EEGVYFAPSQF---------------------------EAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 436 ~~Gv~~~~~~~---------------------------~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
--++-..-++. +.+|++... |+.+.+++-|+++++.+
T Consensus 335 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 335 LATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL--EDVDDIIADLKQALDLI 398 (400)
T ss_pred cceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHH
Confidence 43332222211 123555444 46777788888877764
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-16 Score=153.97 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=158.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|.++++++. +.+.+++++||++|+..++.. ....++.||+..+.|++.......... ..
T Consensus 61 ~~~p~~~~le~~lA~l~-g~~~~i~~ssG~~Ai~~~l~a--ll~~GD~Vi~~~~~y~~~~~~~~~~~~----------~~ 127 (398)
T PRK08249 61 NTNPTVQAFEEKVRILE-GAEAATAFSTGMAAISNTLYT--FLKPGDRVVSIKDTYGGTNKIFTEFLP----------RM 127 (398)
T ss_pred CCChHHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH--hcCCCCEEEEcCCchHHHHHHHHHHHh----------hC
Confidence 45677788899998888 567788999999999999874 234567888888888763221111000 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
| .++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|..+...
T Consensus 128 G------i~v~~vd~~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~~ 194 (398)
T PRK08249 128 G------VDVTLCETGDHEQIEAEIAK---GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPINQ 194 (398)
T ss_pred C------eEEEEcCCCCHHHHHHhcCC---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCccccC
Confidence 1 12334455589999999864 5788988888888999998 999999999999999999999633111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
. ......|++ +++|.+++ |.++ |++++++++++.+... ........++..+..++..++.+ +...+
T Consensus 195 ~-----~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~---~~~~g~~~s~~~a~l~l~~l~tL--~~R~~ 264 (398)
T PRK08249 195 N-----PLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY---REINGATMDPMSAYLILRGMKTL--KLRVR 264 (398)
T ss_pred C-----chhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhCcchH--HHHHH
Confidence 1 112234554 68899985 5565 6667888888877531 12223456788777777777655 34456
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 372 YLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
+..++...+.+.|++... .|| +. ....+.|.|+.|++.
T Consensus 265 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~ 316 (398)
T PRK08249 265 QQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK 316 (398)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence 666777777777765310 011 10 012467889999985
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=150.82 Aligned_cols=308 Identities=11% Similarity=0.019 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
++-.+++.+.+..+..++ ..+...++++++++++ +.+++++++||++|+..+++.+ ....++.||+...+|.+.. .
T Consensus 11 ~~~~~~~~~~l~~~~~~g-~~~~~~~~e~~la~~~-g~~~~v~~~sgt~al~~~l~~~-~~~~Gd~Viv~~~t~~~~~-~ 86 (375)
T PRK11706 11 GTELDYIQQAMSSGKLCG-DGGFTRRCQQWLEQRF-GSAKVLLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTA-N 86 (375)
T ss_pred HHHHHHHHHHHHcCCccC-CCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHh-CCCCCCEEEECCCCcHHHH-H
Confidence 444677888777764332 3566788888888887 6789999999999999988742 2345677888777777643 3
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
.+...|..+...+... .+. ..|++++++.++. ++++|++.. ..|...+ +++|.++|+
T Consensus 87 ~~~~~G~~~v~~d~d~-~~~------------~~d~~~le~~i~~---~tk~i~~~~---~~G~~~~----~~~i~~la~ 143 (375)
T PRK11706 87 AFVLRGAKIVFVDIRP-DTM------------NIDETLIEAAITP---KTRAIVPVH---YAGVACE----MDTIMALAK 143 (375)
T ss_pred HHHHcCCEEEEEecCC-CcC------------CcCHHHHHHhcCC---CCeEEEEeC---CCCCccC----HHHHHHHHH
Confidence 3444444332221110 000 1278999998864 456666432 3566666 899999999
Q ss_pred HhCCEEEEeccccCc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEecHHHHHhhcC---CCC----c----
Q 011856 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRRDIMEMVAP---AGP----M---- 341 (476)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~~~i~~~l~~---~~~----~---- 341 (476)
+||++||+|++|+-. ..+.. ..|-.-|+.+|| |.++.|.+.+++..++++.+.++. .+. .
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~~----~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 219 (375)
T PRK11706 144 KHNLFVVEDAAQGVMSTYKGR----ALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQ 219 (375)
T ss_pred HcCCEEEEECccccccccCCe----eeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccC
Confidence 999999999999522 21111 112223677777 999877777777777888765431 110 0
Q ss_pred -------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-CceEeeeeceeEEEEEe
Q 011856 342 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAICGGYISGMFGFFFT 409 (476)
Q Consensus 342 -------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~~v~~~g~~~~i~~~ 409 (476)
..+.++-.+.+.++.+++.|+.+ ++..++.+++.+++.+.|..+.. ..+ .+........++++.+.
T Consensus 220 ~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T PRK11706 220 VDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR 297 (375)
T ss_pred CCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC
Confidence 01122233456666666666654 44556666677777777765421 001 01011112223444442
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------------------C--------cceEEe--CCCcHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------F--------EAGFTS--LAHSSDDIQ 461 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------~--------~~~~~~--~~~t~e~i~ 461 (476)
. .....++.+.|.++||.+.... . ..+.++ ...+++|++
T Consensus 298 ~-------------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~ 364 (375)
T PRK11706 298 D-------------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQR 364 (375)
T ss_pred C-------------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHH
Confidence 1 1123688899999999754211 0 012333 346899999
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
..++.|++++
T Consensus 365 ~i~~~i~~~~ 374 (375)
T PRK11706 365 TVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-16 Score=153.06 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~ 213 (476)
.++...+|.++++++.+. +..++++||++|+..++... ...+++|++..+.|.+.+... +...|.
T Consensus 43 ~~p~~~~L~~~lA~l~g~-~~~v~~~sG~~ai~~~l~al--~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--------- 110 (376)
T PRK06460 43 ANPTVLELTKKIVELENA-EMGVAFSSGMGAISTTALAL--LKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--------- 110 (376)
T ss_pred CCccHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcCcHHHHHHHHHHhhCc---------
Confidence 455667888888888743 44556688999999888732 334567777665554432211 111121
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 293 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r 293 (476)
.+..++.++.+.++++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+||+|....
T Consensus 111 ----------~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~ 173 (376)
T PRK06460 111 ----------NVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPI 173 (376)
T ss_pred ----------EEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCccc
Confidence 244445555555655543 36788999998889999999 8899999999999999999995321
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
.. .......|++ ++||.++| +.++|++++++++++.+.... ...+.+.+|..+..++..++.+ +..
T Consensus 174 ~~-----~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~---~~~g~~~~~~~a~~~l~~~~~l--~~r 243 (376)
T PRK06460 174 NQ-----KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMR---RTLGTSLDPHAAYLTLRGIKTL--KIR 243 (376)
T ss_pred cC-----ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhchhhH--HHH
Confidence 11 1111124655 79999974 367999999999988776311 1112234555444444444433 355
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
.+++.++.+++.+.|++... .+| +. ....+.|.|+.|++.
T Consensus 244 ~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~ 297 (376)
T PRK06460 244 MDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN 297 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 67788888888888876410 011 00 012467899999985
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=153.82 Aligned_cols=237 Identities=19% Similarity=0.175 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~ 212 (476)
++++....|.+.++++. +.+.+++++||++|+..++.. ....++.|++.++.|.+....+. ...|..
T Consensus 80 ~~~Pt~~~Le~~lA~le-g~~~~iv~~sG~~Ai~~~l~a--l~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~------- 149 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYE-GAESAALFSSGMSAIATTLLA--FVRPGDVILHSQPLYGGTETLLAKTFRNFGVG------- 149 (427)
T ss_pred CCCcCHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHH--HhCCCCEEEEcCCCcccHHHHHHHHHHhcCcE-------
Confidence 45555678888888888 567899999999999988874 23456778888888888543321 111221
Q ss_pred CCCCCCCCCCCceeecc-CCCHHHHHHHHhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEE
Q 011856 213 DSPGVPKGATYETLTAP-FNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALL 283 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~ll 283 (476)
++.++ ..|.+++++.+.+. .+++++|++|.++|++|.+.+ +++|.+++++ +++++
T Consensus 150 ------------~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~~v 213 (427)
T PRK07049 150 ------------AVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRPII 213 (427)
T ss_pred ------------EEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCCEE
Confidence 12222 23678888777531 136789999988888999988 6666666666 89999
Q ss_pred EEeccccCc-cccccchhhccCCCCchh--hhhhhcC--CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHH
Q 011856 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG--GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (476)
Q Consensus 284 I~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg--~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~ 358 (476)
|+||+|.++ .... .+ ++ .|++ ++||.++ +|+|+||+++++++++.+... ......+.+|+.+.+++
T Consensus 214 vvDety~~~~~~~p---l~-~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~---~~~~g~~ls~~~a~l~~ 284 (427)
T PRK07049 214 ACDNTLLGPVFQKP---LE-HG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRAL---RSAIGTQLDPHSCWMLG 284 (427)
T ss_pred EEECCccccccCCc---cc-cC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHH---HHhcCCCCCHHHHHHHH
Confidence 999998654 2111 11 12 4655 7999999 479999999999988877631 11122356788888777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-C--ce---------EeeeeceeEEEEEe
Q 011856 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-H--AI---------CGGYISGMFGFFFT 409 (476)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~--~~---------~v~~~g~~~~i~~~ 409 (476)
..|+.+ ...+++..++...+.+.|++... .+| . .. ...+.|.|+.|++.
T Consensus 285 r~L~tl--~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~ 349 (427)
T PRK07049 285 RSLETL--VLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIK 349 (427)
T ss_pred cCCChH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEc
Confidence 766543 33445566777777777775411 112 1 10 12356889999985
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-16 Score=152.89 Aligned_cols=237 Identities=14% Similarity=0.119 Sum_probs=157.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++. +.+++++++||++|+..++... ..+++.|++..++|.+.........+....
T Consensus 48 ~~~p~~~~le~~lA~l~-g~~~v~~~~gg~~Ai~~~l~al--l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~-------- 116 (382)
T TIGR02080 48 SGNPTRDLLQQALAELE-GGAGAVVTNTGMSAIHLVTTAL--LGPDDLLVAPHDCYGGTYRLLNALAKKGCF-------- 116 (382)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--------
Confidence 46777788999999888 4678999999999999999842 345677888888887644322221111100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (476)
.+..++..|++++++.++. ++++|+++.++|++|.+.+ +++|.++|+++|+++|+||+|..+ ..
T Consensus 117 --------~v~~~d~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~ 181 (382)
T TIGR02080 117 --------RVLFVDQGDEQALRAALAQ---KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPALQ 181 (382)
T ss_pred --------EEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1222233478999998864 5788888888888899888 899999999999999999999532 21
Q ss_pred cccchhhccCCCCchh--hhhhhcCC--CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
. .+....|++ +++|.++| +++.|++++ ++++.+.+.. .......+.+|+.+..++..++.+. ..
T Consensus 182 ~------pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~---~~~~~g~~~sp~~a~l~lr~l~tl~--~R 250 (382)
T TIGR02080 182 N------PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW---WANNLGVTGGAFDSYLTLRGLRTLV--AR 250 (382)
T ss_pred C------chhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH---HHHccCCCCCHHHHHHHHcccchHH--HH
Confidence 1 111224655 68999974 578998866 5777776652 1122244678888777766665442 33
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcCC-c---------eEeeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~~-~---------~~v~~~g~~~~i~~~ 409 (476)
+++..++...+.+.|++... .||. . ....|.|.|+.|++.
T Consensus 251 ~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 251 MRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 55666777777777664310 0110 0 012467889999985
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=151.94 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=157.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.++++++.+ .+.+++++||++|+..++.. ....++.|++.++.|++............
T Consensus 49 ~~~pt~~~L~~~lA~l~g-~~~~i~~~sg~~Ai~~~l~~--l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~---------- 115 (386)
T PRK08045 49 RGNPTRDVVQRALAELEG-GAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKRG---------- 115 (386)
T ss_pred CCCccHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHH--HcCCCCEEEEcCCCcHHHHHHHHHHHhhC----------
Confidence 466777889999998884 56799999999999999884 23456788888888876443322221110
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (476)
++ .+..++..|++++++.+++ ++++|+++.++|++|.+.+ +++|.++|+++|+++|+||+|... ..
T Consensus 116 gi------~v~~vd~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~~~ 182 (386)
T PRK08045 116 CY------RVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPALQ 182 (386)
T ss_pred Ce------EEEEeCCCCHHHHHHhccc---CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 00 1122233478999988864 5788888888888899988 899999999999999999999533 21
Q ss_pred cccchhhccCCCCchh--hhhhhcCC--CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
.......|++ +++|.++| ++..|++++ ++++.+.+.. .....+.+.+|+.+..++..|+.+ +..
T Consensus 183 ------~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~---~~~~~g~~~~p~~~~l~~rgl~tl--~~R 251 (386)
T PRK08045 183 ------NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPR 251 (386)
T ss_pred ------CchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhccH--HHH
Confidence 1122234665 68999984 477888866 5777666642 112223457788887777776543 344
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
+++..++...+.+.|++... .|| +. ....+.|.|+.|++.
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~ 305 (386)
T PRK08045 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence 56666677777776665310 011 00 012467889999985
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-16 Score=154.93 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++. +.+.+++++||+.|+..++... ...+++|++....|.+ +.......-
T Consensus 67 ~~~p~~~~le~~lA~l~-g~~~al~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~~~~-t~~~~~~~~------------ 130 (403)
T PRK07810 67 YGNPTVSMFEERLRLIE-GAEACFATASGMSAVFTALGAL--LGAGDRLVAARSLFGS-CFVVCNEIL------------ 130 (403)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEECChHHHHHHHHHHH--hCCCCEEEEccCCcch-HHHHHHHHH------------
Confidence 45666788999999888 5678999999999999988742 3456677766544433 332221100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (476)
...+.++..++.+|++++++.+++ ++++|++|.+.|+.|.+.+ +++|.++|+++|++||+||+|. ++..
T Consensus 131 ---~~~G~~v~~vd~~d~~~l~~ai~~---~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~ 200 (403)
T PRK07810 131 ---PRWGVETVFVDGEDLSQWEEALSV---PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATPLLQ 200 (403)
T ss_pred ---HHcCcEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 001113555566789999999874 5789999988888998888 9999999999999999999994 3211
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHH-hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~-~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
. . . ..| .|++ +++|.+++ |.++ |+++++++.+. .++. .........+|..++.++..|+.+ +..
T Consensus 201 ~-~--~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~---~~~~~g~~~s~~~a~l~l~~L~tl--~~R 269 (403)
T PRK07810 201 R-G--L-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPALSAFNAWVLLKGLETL--ALR 269 (403)
T ss_pred C-h--h-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccCcH--HHH
Confidence 1 1 1 123 4665 67899985 7776 66777877554 2331 111112356788888777776644 455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEec
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 410 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~ 410 (476)
.++..++...+.+.|++. +.+.. ..+.|.|+.+++..
T Consensus 270 ~~~~~~~a~~~a~~L~~~----p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 270 VRHSNASALRIAEFLEGH----PAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHHHHHHHHHHHHHhcC----CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 666667777777766643 22211 23678899999853
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=141.72 Aligned_cols=292 Identities=16% Similarity=0.174 Sum_probs=177.3
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
+++.+++-+.+++.++++ ....++.|++-+.+|-+. ...+...|..+..+. .+..|+ ++|.|
T Consensus 126 diiit~G~t~~l~~~l~~--~~N~gd~vlie~~ty~~A-L~s~~a~gv~~ipv~-md~~Gi--------------~pE~l 187 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRT--LINRGDHVLIEEYTYPSA-LQSMEALGVKIIPVK-MDQDGI--------------DPESL 187 (472)
T ss_pred eEEEecCCchHHHHHHHH--hhcCCCceEEecccchHH-HHhccccCceEEecc-ccCCCC--------------CHHHH
Confidence 799999999999999995 233445555555566442 222222222111111 112232 79999
Q ss_pred HHHHhcCC------CCeEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc---cc------cch
Q 011856 237 ENLFENNK------GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL---AY------GGA 299 (476)
Q Consensus 237 e~~l~~~~------~~~a~vi~ep~~-~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~---g~------~~~ 299 (476)
++.+..+. +....+.+-|.. |++|...+ .+-.++|.+|++|||+++|.||+|-=+ .. +. ...
T Consensus 188 ~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls-~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s 266 (472)
T KOG0634|consen 188 EEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLS-LERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHS 266 (472)
T ss_pred HHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccC-HHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCcccc
Confidence 99998642 235667777765 44676655 444999999999999999999999422 22 10 011
Q ss_pred hhcc--CCCCc---------hh---hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 300 QEYF--GVTPD---------LT---TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 300 ~~~~--g~~pD---------i~---t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
.+.+ .+.|+ ++ +|||.++.|+|+||+.+++-+++.+-. .....|-+.+.+.+....+.|+...
T Consensus 267 ~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~---~ae~~t~~pSg~sq~iv~a~l~~wg 343 (472)
T KOG0634|consen 267 SSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILD---LAEVATSGPSGFSQGIVYAMLKRWG 343 (472)
T ss_pred HHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhh---hcceeecCcccccHHHHHHHHHHHH
Confidence 0011 11121 22 799999999999999999988777652 2234455667777888778887766
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHhhh-cC---CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 366 EPGTYEYLNKITGELTQG---IIDAGKK-AG---HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~---L~~~~~~-~~---~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
++.+++.+.+.......+ +...+.+ .+ +....+..|.|+|+++.-. ++.. ...-.+..+.+...+.++|
T Consensus 344 qeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~---~~~~-~~~i~q~~e~i~~~~vk~g 419 (472)
T KOG0634|consen 344 QEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYI---NFDT-KKSINQIEEIIFIKAVKNG 419 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccc---cccc-ccchHHHHHHHHHHHHHCC
Confidence 655555544444433332 2222222 22 3344567789999998511 1000 0001122345566788999
Q ss_pred eEeccCCC----------c-ceEEeC-CCcHHHHHHHHHHHHHHHHHh
Q 011856 439 VYFAPSQF----------E-AGFTSL-AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 439 v~~~~~~~----------~-~~~~~~-~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|.+.++.. . .+|++. ....|++++++++|..++++-
T Consensus 420 V~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 420 VKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred eEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 99887631 1 345553 347889999999999988763
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-16 Score=153.51 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=155.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.++++++. +.+..++++||+.|+..++.. ....+++|++.+..|.+.......... ..
T Consensus 62 ~~~p~~~~Le~~lA~l~-G~~~~~~~~sG~~Ai~~~l~~--~l~~Gd~Vl~~~~~y~~~~~~~~~~~~----------~~ 128 (398)
T PRK07504 62 YSNPTVDMFEKRMCALE-GAEDARATASGMAAVTAAILC--QVKAGDHVVAARALFGSCRYVVETLLP----------RY 128 (398)
T ss_pred CCCchHHHHHHHHHHHh-CCCeeeEecCHHHHHHHHHHH--HhCCCCEEEEcCCchhHHHHHHHHHHh----------hc
Confidence 45667788999999888 556667789999999887763 234567888887777664322211100 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ .++..++..|++++++.++. ++++|++|.+++++|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 129 G------~~v~~vd~~d~e~l~~ai~~---~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~~~ 195 (398)
T PRK07504 129 G------IESTLVDGLDLDNWEKAVRP---NTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPLFQ 195 (398)
T ss_pred C------eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 1 12344445589999998863 6789999988888999998 999999999999999999999522111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEE-EEEecHHHHHh-hcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVG-AYGGRRDIMEM-VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG-~~~~~~~i~~~-l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
. ......|++ +++|.+++ |+++| +++++++.++. ++. .........+|..++.++..|+.+ +...
T Consensus 196 ~-----~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~---~~~~~g~~~s~~~A~~~l~~L~tl--~~R~ 265 (398)
T PRK07504 196 K-----PLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD---YFRHTGPSLSPFNAWTLLKGLETL--PVRV 265 (398)
T ss_pred C-----chhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccchH--HHHH
Confidence 1 112234665 67899985 88886 45677776542 321 111112356788888877777655 3455
Q ss_pred HHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 371 EYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
++..++...+.+.|++... .|| +. ...++.|.|+.|++.
T Consensus 266 ~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 266 RQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 6666777777777765311 011 11 113456889999985
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=136.67 Aligned_cols=286 Identities=16% Similarity=0.179 Sum_probs=180.7
Q ss_pred CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+..-..++...+.+.-| ..|.+++..|..|.++..+|.. ..+|+++|+...++|.-+...+ ...+.
T Consensus 67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~-c~PGkeKIl~cPPtysMY~v~A-~iNd~----------- 133 (375)
T KOG0633|consen 67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCV-CDPGKEKILDCPPTYSMYVVDA-AINDA----------- 133 (375)
T ss_pred CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhhe-ecCCccceeecCCcceeEEEEe-ecCCc-----------
Confidence 33333455555655555 6899999999999999999953 3467899999999886543222 11222
Q ss_pred CCCCCCCCceeeccCC-----CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 216 GVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
+++.+|.+ |.+++.+.++.. ..++++++.+..+++|.+...++ +.+|.+.-+ +.++++||+|.
T Consensus 134 --------eVvkvpl~pdF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~ik~~d-i~KiLe~p~--nglVVvDEAYi 201 (375)
T KOG0633|consen 134 --------EVVKVPLNPDFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSIIKEDD-ILKILEMPD--NGLVVVDEAYI 201 (375)
T ss_pred --------eEEEecCCCCccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccccHHH-HHHHHhCCC--CcEEEEeeeeE
Confidence 23444332 688888888753 36777777776677788776444 555555444 68999999998
Q ss_pred Cc-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH--
Q 011856 291 GF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-- 363 (476)
Q Consensus 291 g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-- 363 (476)
.| ..+. ...+..-.|+++ ||||++| +|+|+|+...+.++++.+...+ ..|+.+.++..+|+++|.-
T Consensus 202 dFsg~~S--~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K-----aPYNiS~~~s~~AL~Als~~n 274 (375)
T KOG0633|consen 202 DFSGVES--RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK-----APYNISVAGSVAALAALSDSN 274 (375)
T ss_pred eeccccc--cchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc-----CCccccchhHHHHHHhcCccc
Confidence 88 5332 222223357765 7999999 8999999999999988876422 3566667777777777751
Q ss_pred hcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee--eeceeEEEEEecCCCcCchhhcccchHHHHHHH-HHHHHCCe
Q 011856 364 LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGV 439 (476)
Q Consensus 364 ~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv 439 (476)
++. ++.++-+.+.+.+|.+.|.+ .+...+.. ....|+.+++.+. +...+..++ +.+-+.||
T Consensus 275 ~kkme~~rdaiv~er~RL~keLt~----v~~~~~~~gg~daNFiLi~v~~~-----------~n~~akkly~q~at~~gV 339 (375)
T KOG0633|consen 275 GKKMEDVRDAIVRERERLFKELTE----VPFLNDYPGGSDANFILIEVTGG-----------DNGMAKKLYKQDATKMGV 339 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhc----CccccCCCCcccccEEEEEEcCC-----------CcHHHHHHHHHHHHhcce
Confidence 111 23333333333334344433 33322222 2466777777543 223334444 44457899
Q ss_pred EeccCCC-----cceEEeCCCcHHHHHHHHHHHHHH
Q 011856 440 YFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 440 ~~~~~~~-----~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.++..+. +.+|++ ..|+|+.+.+++.|+++
T Consensus 340 vVRfrgse~~c~G~lRit-vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 340 VVRFRGSEEGCKGYLRIT-VGTPEENTVLMKCLKQF 374 (375)
T ss_pred EEEEcCCccccceeEEEE-cCCcccchHHHHHHHhh
Confidence 9986542 235555 45788888888888865
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=152.24 Aligned_cols=240 Identities=14% Similarity=0.082 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++. +.+.+++++||+.|+..++... ...++.|++..+.|.+. ...+..... ..
T Consensus 56 ~~~p~~~~le~~lA~l~-g~~~av~~~sG~~Ai~~~l~al--~~~Gd~Vi~~~~~y~~t-~~~~~~~~~---------~~ 122 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLE-GTEAAVATSSGMGAIAATLLTI--LKAGDHLISDECLYGCT-FALLEHALT---------KF 122 (391)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEecCcchHH-HHHHHHHHh---------cC
Confidence 35666778888888888 5567899999999999888742 34566777766655443 222211000 01
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
| ..+..++.+|++++++.++. ++++|++|.++++.|.+.+ +++|.++|+++|+++|+||+|.....+
T Consensus 123 G------~~~~~vd~~d~e~l~~~i~~---~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~~~~ 189 (391)
T TIGR01328 123 G------IQVDFINMAIPEEVKAHIKD---NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATPMLT 189 (391)
T ss_pred C------eEEEEECCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchhccC
Confidence 1 23455566689999988863 6788999988888898888 999999999999999999999521111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCc-EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~-iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
. ..+...|++ +++|.+++ |.+ .|++++++++++.++........ ....+|..++.++..|+.+ +..++
T Consensus 190 ~-----~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~-g~~l~~~~a~l~l~~L~tl--~~r~~ 261 (391)
T TIGR01328 190 N-----PVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT-GSVISPFDAWLILRGLKTL--NIRMK 261 (391)
T ss_pred C-----chhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC-CCCCCcHHHHHHHhCcCcH--HHHHH
Confidence 1 122335655 68899985 666 56678889988877631111111 2345676666666555433 34567
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 372 YLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
+..++..++.+.|++... .+| +. ...++.|.|+.|++.
T Consensus 262 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 262 RHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 777788888888776321 011 11 013466889999985
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-15 Score=133.72 Aligned_cols=307 Identities=15% Similarity=0.154 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhc--cCCc-eEEEE-eCCCCCCchhHHhhcCCCCccCC
Q 011856 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF--TGRE-RIIKF-EGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~--~~~~-~ii~~-~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
..+...|++.+.+.++ ..+++.+||+...+...+..+.-.. .+.. +|+.. .+-|-|+.+..+.....-..+
T Consensus 77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~k-- 154 (417)
T COG3977 77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAK-- 154 (417)
T ss_pred hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeecc--
Confidence 4677888888888886 4679999999999988888753222 2322 33332 566877665544221110000
Q ss_pred CCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 211 LPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
|..+..+ --.++| -|.++|+-. +.+.+|++.-..+++|.+...+| +.+|.+|+++||+.||+|.+|
T Consensus 155 -P~iel~~------~g~FKY~vDF~~l~i~-----e~~g~ic~SRPtNPTGNVlTdeE-~~kldalA~~~giPliIDnAY 221 (417)
T COG3977 155 -PNIELLP------AGQFKYHVDFEHLHIG-----ESTGAICVSRPTNPTGNVLTDEE-LAKLDALARQHGIPLIIDNAY 221 (417)
T ss_pred -CCccccc------ccceeeccCHHHcccc-----cccceEEecCCCCCCCCcccHHH-HHHHHHHhhhcCCcEEEeccc
Confidence 1111111 111222 267766422 47888888877777787776555 999999999999999999999
Q ss_pred cCc-cccccchhhccCCCCchh---hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH---
Q 011856 290 TGF-RLAYGGAQEYFGVTPDLT---TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK--- 362 (476)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~--- 362 (476)
. . ..+--|.-...-..++++ ++||.=-.|.|+|.+++++++++.+.+..... +......+.+.+...++
T Consensus 222 g-~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~ii---sLap~~~G~Aia~~mie~gd 297 (417)
T COG3977 222 G-VPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGII---SLAPGRMGPAIAAEMIESGD 297 (417)
T ss_pred C-CCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhcccee---eecCCCccHHHHHHHhhcch
Confidence 3 3 333222111111234554 57784337899999999999999987432111 11112222233332332
Q ss_pred --HhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 363 --RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 363 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
.+.++-.+--++++.+.....|++...+.++..+-+....|+|+.|.+-+++. .++++.|.++||+
T Consensus 298 l~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt------------~~LYq~LKa~Gvl 365 (417)
T COG3977 298 LLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITT------------EELYQRLKARGVL 365 (417)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCH------------HHHHHHHHhCeEE
Confidence 11111122222333333344444444444544443444456677776655443 6899999999999
Q ss_pred eccCCC-------------cceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 441 FAPSQF-------------EAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 441 ~~~~~~-------------~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+.|+.+ .++|+++.-+++.|+..+.+|.+.+++..
T Consensus 366 ~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 366 MVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred EecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999842 13588999999999999999999887653
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=150.75 Aligned_cols=232 Identities=18% Similarity=0.139 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++. +.+..++++||++|+..++. .+..+++||+.++.|++..........
T Consensus 49 ~~~pt~~~le~~la~l~-g~~~~~~~~sG~~ai~~~~~---ll~~Gd~Vl~~~~~y~~t~~~~~~~~~------------ 112 (366)
T PRK08247 49 TGNPTRGVLEQAIADLE-GGDQGFACSSGMAAIQLVMS---LFRSGDELIVSSDLYGGTYRLFEEHWK------------ 112 (366)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHH---HhCCCCEEEEecCCcCcHHHHHHHHhh------------
Confidence 46667788999999888 44567889999999988764 345668899999999874332211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~ 294 (476)
..+.++..++..|++++++.+++ ++++|++|.++|+.|.+.+ +++|.++|++||+++|+||+| +++..
T Consensus 113 ----~~G~~v~~vd~~d~~~l~~~i~~---~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 113 ----KWNVRFVYVNTASLKAIEQAITP---NTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ----ccCceEEEECCCCHHHHHHhccc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcccccc
Confidence 01113455566689999998864 5778888776666665555 999999999999999999999 43311
Q ss_pred cccchhhccCCCCchh--hhhhhcCC--CCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
. . .....|++ ++||.++| ++..|+++++ +++++.+.. .........+|..+..++..|+.+ +..
T Consensus 182 ~-p-----~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~l~tl--~~r 250 (366)
T PRK08247 182 R-P-----LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY---YQNAAGAVLSPFDSWLLIRGMKTL--ALR 250 (366)
T ss_pred C-c-----hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHH---HHHhcCCCCChHHHHHHHhccCcH--HHH
Confidence 1 1 11123554 79999985 4788999886 667766642 112223455777776666665433 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceE--eeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~~i~~~ 409 (476)
+++.+++.+.+.+.|++ ++.+.. .++.|.|+.+++.
T Consensus 251 ~~~~~~~a~~l~~~L~~----~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 251 MRQHEENAKAIAAFLNE----QPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHHHHHHHHHHHHHHh----CCCeeEEecCCcCcEEEEEEC
Confidence 45556666666666665 333322 3457888888874
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=149.89 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=149.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+.+++++ +.+.+++++||++|+..++... ...++.||+....|.+..........
T Consensus 59 ~~p~~~~le~~la~l~-g~~~~v~~ssG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~~------------- 122 (390)
T PRK08133 59 TNPTVTMFQERLAALE-GAEACVATASGMAAILAVVMAL--LQAGDHVVSSRSLFGSTVSLFEKIFA------------- 122 (390)
T ss_pred CChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCcchhHHHHHHHHHH-------------
Confidence 4566778888888888 5678999999999999998742 34566777766555443221111000
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
..+.++..++.+|++++++.++. ++++|++|.++|+.|.+.+ +++|.++|++||+++|+|+++.......
T Consensus 123 ---~~G~~v~~vd~~d~~~l~~~i~~---~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~~~~~ 192 (390)
T PRK08133 123 ---RFGIETTFVDLTDLDAWRAAVRP---NTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTPALQQ 192 (390)
T ss_pred ---HcCcEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 00113555666789999998863 6788999888888899988 9999999999999999999984221101
Q ss_pred cchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
. . ..| .|++ +++|.+++ |.++ |++++++++++.+.. .........++..+..++..++.+ ....++
T Consensus 193 p--l-~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~---~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~ 262 (390)
T PRK08133 193 P--L-KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG---FLRTAGPTLSPFNAWVFLKGLETL--SLRMEA 262 (390)
T ss_pred c--h-hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH---HHHHhCCCCCHHHHHHHHcccchH--HHHHHH
Confidence 1 1 122 4655 68899985 7777 556778877665542 111112244566655554444322 334455
Q ss_pred HHHHHHHHHHHHHHHhh----hcC-Cce---------EeeeeceeEEEEEe
Q 011856 373 LNKITGELTQGIIDAGK----KAG-HAI---------CGGYISGMFGFFFT 409 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~-~~~---------~v~~~g~~~~i~~~ 409 (476)
..++...+.+.|++... .+| +.. ...+.|.|+.|++.
T Consensus 263 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 263 HSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 55666666666665310 011 000 13467889999985
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=149.17 Aligned_cols=246 Identities=16% Similarity=0.076 Sum_probs=151.6
Q ss_pred CCCCcHHHHHHHHHHHHhc--CCCCC-C------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc--cC
Q 011856 113 IGHADDQVLAALGETMKKG--TSFGA-P------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TG 180 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~--~~~~~-~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~--~~ 180 (476)
.+..++.+.+++.+.+... ..... + .+...++.+++++++. +.++++|++|++++++.+++..... ..
T Consensus 7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~ 86 (353)
T TIGR03235 7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQK 86 (353)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3456899999999888542 11111 1 1335678888888886 5678999999999999998854322 12
Q ss_pred CceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 181 RERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
+++.|+.....|........ ..|..+...+.... + ..|+++|++.+++ ++++|+++.+++
T Consensus 87 g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~-------------~~d~~~l~~~l~~---~~~lv~~~~~~n 149 (353)
T TIGR03235 87 GKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDES-G-------------RIDVDELADAIRP---DTLLVSIMHVNN 149 (353)
T ss_pred CCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCC-C-------------cCCHHHHHHhCCC---CCEEEEEEcccC
Confidence 22444444444544332221 12322222111100 0 1278999998863 578888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHh
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~ 334 (476)
++|.+.| +++|.++|++||+++|+|++|. |.. ....+ ....|++++| |.++. ..+|+++.+++..+.
T Consensus 150 ~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~~g~~---~~~~~--~~~~D~~~~s~~K~~gp-~g~g~l~~~~~~~~~ 219 (353)
T TIGR03235 150 ETGSIQP----IREIAEVLEAHEAFFHVDAAQVVGKI---TVDLS--ADRIDLISCSGHKIYGP-KGIGALVIRKRGKPK 219 (353)
T ss_pred CceeccC----HHHHHHHHHHcCCEEEEEchhhcCCc---ccccc--ccCCCEEEeehhhcCCC-CceEEEEEccCcccc
Confidence 9999998 9999999999999999999995 211 11111 1236777555 97641 238999888875332
Q ss_pred hcCCCCccc-------cCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 335 VAPAGPMYQ-------AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 335 l~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
.. ..+... ......|+....+..++++.+.+ ++..++++++.++++++|++
T Consensus 220 ~~-~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 279 (353)
T TIGR03235 220 AP-LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT 279 (353)
T ss_pred cc-cCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 001111 11223456666677777877653 45667777777777777765
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=145.77 Aligned_cols=315 Identities=15% Similarity=0.087 Sum_probs=179.7
Q ss_pred CcHHHHHHHHHHHHh--cCC-----CCCCCHHHHHHH----HHHHhhCCCCCeEE-E---eCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKK--GTS-----FGAPCLLENVLA----EMVISAVPSIEMVR-F---VNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~--~~~-----~~~~~~~~~~la----~~l~~~~~~~e~v~-~---~~sGseA~~~al~~ar~~~~ 180 (476)
..|.+.+++...+.+ +.. +..-++...++. ++..+.+...+..+ + .+||+.||.+++. ++.+
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~---aL~~ 122 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYT---ALLQ 122 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHH---HhCC
Confidence 468999999988843 111 111122333333 23445564333333 2 3899999999998 4444
Q ss_pred -CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------CHHHHHHHHhcCCCCeEEEEE-
Q 011856 181 -RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIIL- 252 (476)
Q Consensus 181 -~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~- 252 (476)
++.|+..+-...|+........+..+. ..+ ...+.+.+++| |+++|++++++. +.+.|++
T Consensus 123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s------~~~----~~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~ 190 (475)
T PLN03226 123 PHDRIMGLDLPHGGHLSHGYQTDGKKIS------ATS----IYFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAG 190 (475)
T ss_pred CCCEEEECCCCcCcchhhhhhhcccccc------cce----EEEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEe
Confidence 455655443222221111111111000 000 00011233445 899999999754 3445555
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~ 328 (476)
+++++ ...+ +++|+++|++||++|++|++| .|+ ..+... ..++ ..|++ |++|+|.| -+.|+++++
T Consensus 191 ~S~~s---~~~D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p~~-~~Div~~t~hK~L~G-P~Gg~I~~~ 259 (475)
T PLN03226 191 ASAYP---RDWD----YARMRKIADKVGALLMCDMAHISGLVAAQEAA--SPFE-YCDVVTTTTHKSLRG-PRGGMIFFR 259 (475)
T ss_pred cCcCC---CccC----HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CCCC-CCeEEEecCcccccC-CCceEEEEc
Confidence 55543 4445 889999999999999999999 566 332211 1122 35766 68899964 234666777
Q ss_pred HHHH-----------Hh--hcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 329 RDIM-----------EM--VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 329 ~~i~-----------~~--l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+++. +. ..+......+. .+.++...++..++|+.+.+. ++.+++.++.++|++.|.+.+.+
T Consensus 260 ~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~-g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~-- 336 (475)
T PLN03226 260 KGPKPPKGQGEGAVYDYEDKINFAVFPGLQ-GGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYK-- 336 (475)
T ss_pred hhhcccccCCCccHHHHHHHhccccCCccC-CCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCE--
Confidence 7544 22 11111111222 235566777777889988653 46888889999999988874321
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEE------eCCCcH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAHSS 457 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~------~~~~t~ 457 (476)
+... .....++.+.+.... ....++.+.|.+.||++..+. .+.+|+ +..+++
T Consensus 337 l~~~-~t~~hi~lv~~~~~g------------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~ 403 (475)
T PLN03226 337 LVTG-GTDNHLVLWDLRPLG------------LTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVE 403 (475)
T ss_pred EEcC-CCCCCEEEEEccCCC------------CCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCH
Confidence 1110 011345555553211 112456677778899887542 234554 467899
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVKM 472 (476)
Q Consensus 458 e~i~~~~~~l~~~~~ 472 (476)
+|++++.+.|.++++
T Consensus 404 ~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 404 KDFEKVAEFLHRAVT 418 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-15 Score=146.50 Aligned_cols=288 Identities=14% Similarity=0.034 Sum_probs=172.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
++++...+|.+.++++. +.+.+++++||++|+..++... ...++.||+.++.|.+..... +...|.
T Consensus 62 ~~~pt~~~Le~~lA~l~-g~~~~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi-------- 130 (394)
T PRK07050 62 HATPTSLALAQRLAEIE-GGRHALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEWLARDFGI-------- 130 (394)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHHHHHhcCe--------
Confidence 46667788999998887 5789999999999999999843 346678888888887643211 111121
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (476)
++..++..+.+++++.++. ++++|++|.+.|+.|.+.+ +++|.++|+++|++||+|++|. +
T Consensus 131 -----------~v~~vd~~~~~~l~~~i~~---~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 131 -----------TVRFYDPLIGAGIADLIQP---NTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred -----------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCcccc
Confidence 2333443456788888863 5788888877777666555 9999999999999999999994 3
Q ss_pred ccccccchhhccCCCCchh--hhhhhcCCC--CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC
Q 011856 292 FRLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (476)
.. ......| .|++ +++|.+++| .+.|++++ ++++++.++.. ......+.+|..+..++..|+.+
T Consensus 193 ~~----~~~l~~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~---~~~~G~~~~~~~a~l~lr~l~tl-- 261 (394)
T PRK07050 193 LA----FKPFEHG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLA---RMRLGIGVSADDCSLVLRGLPSL-- 261 (394)
T ss_pred cc----cCHHHcC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHH---HHhcCCCCCHHHHHHHHcCCCcH--
Confidence 21 1111123 3655 689999854 57888865 67777766521 11112244555544333322211
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 367 PGTYEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
...+++..++...+.+.|++... .+| +. ....+.|.++.+.+..+. ..+...+|.+
T Consensus 262 ~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----------~~~~~~~~~~ 331 (394)
T PRK07050 262 QVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY----------SPAQVDAFVE 331 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC----------CHHHHHHHHH
Confidence 22344555555556666554310 001 00 012345777777774210 1233456777
Q ss_pred HHHHCCeEeccCCCc---------------------ceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 433 GMLEEGVYFAPSQFE---------------------AGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 433 ~l~~~Gv~~~~~~~~---------------------~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.|...++-+.-++.. .+|++... |+.+.+++-|+++++..+
T Consensus 332 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl--E~~~dl~~dl~~al~~~~ 393 (394)
T PRK07050 332 ALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL--EDEADLIADLEQALEAAL 393 (394)
T ss_pred cCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc--CCHHHHHHHHHHHHHHhh
Confidence 666555433322211 23454443 567777888888877654
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=147.06 Aligned_cols=286 Identities=11% Similarity=0.070 Sum_probs=176.3
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
++...+|+++++++. +.+.+++++||++|+..++... ...+++||+.++.|++.....-.... ..++
T Consensus 49 nPt~~~lE~~lA~l~-g~~~~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~~~~~----------~~gi 115 (377)
T TIGR01324 49 TLTHFALQDAMCELE-GGAGCYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCDIVLK----------RMGV 115 (377)
T ss_pred CccHHHHHHHHHHHh-CCCcEEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHHH----------hcCc
Confidence 445567777787777 5678999999999999999842 44567888888888874322110000 0111
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 296 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~ 296 (476)
++..++.++.+++++.++. ++++|++|.+.++.|.+.+ +++|.++|++||+++|+|++|. |+.
T Consensus 116 ------~v~~~d~~~~e~l~~~i~~---~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a~g~~--- 179 (377)
T TIGR01324 116 ------DITYYDPLIGEDIATLIQP---NTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWAAGLL--- 179 (377)
T ss_pred ------EEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCccccc---
Confidence 2333334445788888763 6889999988888888887 9999999999999999999994 331
Q ss_pred cchhhccCCCCchh--hhhhhcCC--CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
+ .......|++ +++|.++| +.-.|+++++++.++.+.. .....+ ...+|..+...+..++.+ .-..++
T Consensus 180 -~--~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~--~~~~~G-~~l~p~~a~~~~rgl~tl--~~R~~~ 251 (377)
T TIGR01324 180 -F--KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE--HSYLMG-QMVDADDAYTTLRGLRTL--GVRLKQ 251 (377)
T ss_pred -c--CccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHH--HHHHhC-CCCCHHHHHHHHhhhhhH--HHHHHH
Confidence 1 1122345766 57899985 3668888888887776652 111222 245666666655555533 334566
Q ss_pred HHHHHHHHHHHHHHHhh----hcCC-c---------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 373 LNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~~-~---------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
..++...+.+.|++... .+|. . ....+.|.|+.|++.+. ..+...+|.+.|.-.+
T Consensus 252 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~-----------~~~~~~~~~~~l~~~~ 320 (377)
T TIGR01324 252 HQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL-----------TQKQVHAFLDHLQLFG 320 (377)
T ss_pred HHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC-----------CHHHHHHHHHhCCcce
Confidence 66666667666665311 0110 0 01236688999998531 1223345666555433
Q ss_pred eEeccCCC-----------------------cceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 439 VYFAPSQF-----------------------EAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 439 v~~~~~~~-----------------------~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+-+.-++. ..+|++... ||.+.+++-|+++++.
T Consensus 321 ~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl--E~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 321 LGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL--ENVDDLKADLKAGFEA 376 (377)
T ss_pred EeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC--CCHHHHHHHHHHHHhc
Confidence 32222221 124555444 4677777777777764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-14 Score=139.28 Aligned_cols=307 Identities=19% Similarity=0.179 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
.+..+++.+.++.+.... -+...++.+.+++++ +...++.++|||.|++.+++.. ...+++.||+..-+|-.....
T Consensus 15 ~~e~~~v~~vl~sg~i~~--G~~v~~FE~~~ae~~-G~k~ava~~sgT~AL~laL~al-~ig~GDeVI~ps~TfvATan~ 90 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG--GPFVRRFEQAFAEYL-GVKYAVAVSSGTAALHLALLAL-AIGPGDEVIVPSFTFVATANA 90 (374)
T ss_pred hHHHHHHHHHHHcCCeec--ChHHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHhc-CCCCCCEEEecCCchHHHHHH
Confidence 567778888888764333 334455666666666 8899999999999999999943 356778888887777664444
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
.+..+..++...--|....+ |++.+|+.|+. ++++||.-...|. .+. ++.|.+||+
T Consensus 91 i~~~Ga~PVFvDid~~T~ni--------------d~~~ie~aIt~---~tKAIipVhl~G~---~~d----m~~i~~la~ 146 (374)
T COG0399 91 VLLVGAKPVFVDIDPDTLNI--------------DPDLIEAAITP---RTKAIIPVHLAGQ---PCD----MDAIMALAK 146 (374)
T ss_pred HHHcCCeEEEEecCCcccCC--------------CHHHHHHHccc---CCeEEEEehhccC---CCC----HHHHHHHHH
Confidence 43333333322111222222 89999999985 4888888877654 455 999999999
Q ss_pred HhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhc---CCCCc------
Q 011856 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVA---PAGPM------ 341 (476)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~---~~~~~------ 341 (476)
+||++||.|-+|+ |- +.|+ ..|-.-|+.+|| |.++.| -.|+++.+ +++.+.++ ..+..
T Consensus 147 ~~~l~vIEDaAqa~Ga~y~gk-----~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~ 220 (374)
T COG0399 147 RHGLPVIEDAAQAHGATYKGK-----KVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFK 220 (374)
T ss_pred HcCCeEEEEcchhccCeecCc-----ccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCcccc
Confidence 9999999999994 33 3332 122233566554 999976 67777775 55665554 21111
Q ss_pred -c---ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee---eceeEEEEEecCCCc
Q 011856 342 -Y---QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY---ISGMFGFFFTEGPVY 414 (476)
Q Consensus 342 -~---~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~---~g~~~~i~~~~~~~~ 414 (476)
. .+..+..+-+.++.+++.|+.+ +++.++-+++.+++.+.|+++.. ...+....+ .-.++.+.+...
T Consensus 221 y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i~~~~~--- 294 (374)
T COG0399 221 YLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTILVDEE--- 294 (374)
T ss_pred ceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEEEecCC---
Confidence 1 1233445566777777777655 56777777888888888876531 111111111 111222222211
Q ss_pred CchhhcccchHHHHHHHHHHHHCCe----EeccCCC-----------------------cceEEe--CCCcHHHHHHHHH
Q 011856 415 NFEDAKKSETTKFARFYRGMLEEGV----YFAPSQF-----------------------EAGFTS--LAHSSDDIQHTIT 465 (476)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~Gv----~~~~~~~-----------------------~~~~~~--~~~t~e~i~~~~~ 465 (476)
....+.+.+.|.++|| +..|... ..++++ ...+++|+++.++
T Consensus 295 ---------~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~ 365 (374)
T COG0399 295 ---------GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIE 365 (374)
T ss_pred ---------CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHH
Confidence 1123577888888854 4444210 012343 5679999999999
Q ss_pred HHHHHHHH
Q 011856 466 AAEKVKMR 473 (476)
Q Consensus 466 ~l~~~~~~ 473 (476)
+|++++..
T Consensus 366 ~l~~~~~~ 373 (374)
T COG0399 366 ALKEVLGS 373 (374)
T ss_pred HHHHHhcc
Confidence 99998764
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-15 Score=145.88 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=154.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 214 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~ 214 (476)
++++...+|+++++++.+. +..++++||++|+..++... ...++.|++..+.|++........ ...
T Consensus 57 ~~~p~~~~Le~~lA~l~g~-~~~v~~~sG~~Ai~~~l~al--l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~---------- 123 (405)
T PRK08776 57 SGNPTRDLLGEALAELEGG-AGGVITATGMGAINLVLNAL--LQPGDTLVVPHDAYGGSWRLFNALAKKG---------- 123 (405)
T ss_pred CCChHHHHHHHHHHHHhCC-CceEEEcCHHHHHHHHHHHH--hCCCCEEEEccCCchHHHHHHHHHHHhc----------
Confidence 4556667888888888744 55677888999999888742 345677888888887633211111 011
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-cc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FR 293 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~r 293 (476)
+ ..+..++..|+++|++.++. ++++|+++..+|++|.+.+ +++|.++|++||+++|+||+|.. ..
T Consensus 124 -g------~~v~~v~~~d~~~l~~~i~~---~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~ 189 (405)
T PRK08776 124 -H------FALITADLTDPRSLADALAQ---SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPAL 189 (405)
T ss_pred -C------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 1 12444555689999998863 5778888777778888877 99999999999999999999952 11
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
. ..+....|++ +.+|.+++ ++..|++++ ++++.+.+.. ......+..+|+.+.+.+..++.+ +.
T Consensus 190 ~------~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~---~~~~~g~~~s~~~a~l~~~gl~tl--~~ 258 (405)
T PRK08776 190 Q------KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW---WANALGLTGSPFDAFLTLRGLRTL--DA 258 (405)
T ss_pred C------CcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhCcH--HH
Confidence 1 1111234665 57899984 467888866 5677776642 111123356888888777666544 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--h--cCC-c---------eEeeeeceeEEEEEe
Q 011856 369 TYEYLNKITGELTQGIIDAGK--K--AGH-A---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~--~--~~~-~---------~~v~~~g~~~~i~~~ 409 (476)
..++..++...+.+.|++.-. + +|. . ....+.|.|+.|++.
T Consensus 259 r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 259 RLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 667777788887777775310 0 110 0 012467889999985
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=137.61 Aligned_cols=319 Identities=17% Similarity=0.144 Sum_probs=201.2
Q ss_pred cHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 011856 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (476)
+|+|++|+.+..-. +.. -......++.+.|...+.. .+-+++..||+-++|+++.. ...++++|++...+.+|
T Consensus 17 ~~~V~~am~~~~~~--h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~s--l~~pgdkVLv~~nG~FG 92 (383)
T COG0075 17 PPRVLLAMARPMVG--HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVAS--LVEPGDKVLVVVNGKFG 92 (383)
T ss_pred CHHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHh--ccCCCCeEEEEeCChHH
Confidence 67777777654322 111 1234556777777777763 35677789999999999984 33467899999888888
Q ss_pred CchhHHh-hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 194 HADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 194 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
....-+. ..|..+..+..+....+ |++++++.|+++ +++++|.+-.+-..+|...| +++|
T Consensus 93 ~R~~~ia~~~g~~v~~~~~~wg~~v--------------~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp----l~~I 153 (383)
T COG0075 93 ERFAEIAERYGAEVVVLEVEWGEAV--------------DPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP----LKEI 153 (383)
T ss_pred HHHHHHHHHhCCceEEEeCCCCCCC--------------CHHHHHHHHhcC-CCccEEEEEeccCcccccCc----HHHH
Confidence 6554433 33444433222211111 899999999964 35667777776677899999 9999
Q ss_pred HHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCc--c--------
Q 011856 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM--Y-------- 342 (476)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~--~-------- 342 (476)
.++|++||+++|+|-|-+ | -|...-.+.+|++.-+..--|++++---+|.+..+++..+.+...... +
T Consensus 154 ~~~~k~~g~l~iVDaVsS-~-Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~ 231 (383)
T COG0075 154 AKAAKEHGALLIVDAVSS-L-GGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLK 231 (383)
T ss_pred HHHHHHcCCEEEEEeccc-C-CCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHH
Confidence 999999999999998775 2 122344455666333334569998422378888899888877643211 1
Q ss_pred -----ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc
Q 011856 343 -----QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (476)
Q Consensus 343 -----~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (476)
....++.+.....+..++|+.+.+ ++..++.+++.+.+++++++++.+.-. .+-.....+..+..
T Consensus 232 ~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~------ 304 (383)
T COG0075 232 YMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKV------ 304 (383)
T ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEEC------
Confidence 122334444555666688888776 556777778888888888876433211 00011111222222
Q ss_pred CchhhcccchHHHHHHHHHHH-HCCeEeccCCC----cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 415 NFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|+......+...++ +.|+.+.++.. ..+|+ .-..+.+++..++.+|+.++.++
T Consensus 305 -------P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 305 -------PEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred -------CCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 22211123333455 45898887743 24677 23678999999999999998764
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=145.98 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++.+...+|.+.++++. +.+..++++||+.|+..+++. ....+++||+..+.| +.+.......-
T Consensus 62 ~~~p~~~~le~~lA~l~-g~~~~i~~~sG~~Al~~~l~~--ll~~Gd~Viv~~~~y-~~t~~~~~~~~------------ 125 (403)
T PRK07503 62 ISNPTLALLEQRMASLE-GGEAAVALASGMGAITATLWT--LLRPGDEVIVDQTLY-GCTFAFLHHGL------------ 125 (403)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHHH--HcCCCCEEEEccCcc-chHHHHHHHHH------------
Confidence 35666788888888887 445678888999999999874 244567777766655 43332221100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
...+.++..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+|++|.....+
T Consensus 126 ---~~~G~~v~~vd~~d~~~l~~~i~~---~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~~~~ 195 (403)
T PRK07503 126 ---GEFGVTVRHVDLTDPAALKAAISD---KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTPYLQ 195 (403)
T ss_pred ---hhCCEEEEEeCCCCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 001113455556689999998864 5788888888888898888 999999999999999999999532111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
. ..+...|++ +++|.+++ | +++|++++++++++.++... .........+++.++.++..|+.+ +...+
T Consensus 196 ~-----~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~-~~~~~g~~~s~~~a~l~l~~L~tl--~~r~~ 267 (403)
T PRK07503 196 R-----PLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG-LKDMTGAVMSPFDAFLLMRGLKTL--ALRMD 267 (403)
T ss_pred C-----chhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh-HHhCcCCCCCHHHHHHHHcCcchH--HHHHH
Confidence 1 112334655 68899995 5 78898998999888775210 011123466788877777666544 33445
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIID 386 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (476)
+..++...+.+.|++
T Consensus 268 ~~~~na~~~a~~L~~ 282 (403)
T PRK07503 268 RHCASAQAVAEWLAR 282 (403)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555667777777665
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-14 Score=145.49 Aligned_cols=279 Identities=18% Similarity=0.198 Sum_probs=163.0
Q ss_pred HHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh----cCCCCccCCCCCCCCC
Q 011856 143 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGLPDSPGV 217 (476)
Q Consensus 143 ~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~~~~~~~ 217 (476)
++.++++++++ ..+++.+++||+++++.++.. +...++++|++.++ .|.++...+.. .|..+...+.... .
T Consensus 116 e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a-~~~~~g~~Vlv~~~-~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~- 191 (447)
T PRK00451 116 EYQTMICELTGMDVANASMYDGATALAEAALMA-VRITKRKKVLVSGA-VHPEYREVLKTYLKGQGIEVVEVPYEDG-V- 191 (447)
T ss_pred HHHHHHHHHhCCCcceEEecCcHHHHHHHHHHH-HHhcCCCEEEEeCc-cCHHHHHHHHHHHHhCCcEEEEecCCCC-C-
Confidence 44466688876 456899999999988877763 23345677777654 55545444332 2332222211100 1
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCcccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLA 295 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~r~g 295 (476)
-|+++|++.++. ++++|++... +++|.+.+ +++|.++|+++|+++|+ |.+..|+.
T Consensus 192 -------------~d~~~l~~~i~~---~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~~-- 248 (447)
T PRK00451 192 -------------TDLEALEAAVDD---DTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGLL-- 248 (447)
T ss_pred -------------CCHHHHHHhcCC---CeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhccC--
Confidence 178999998863 5777777665 56899888 99999999999999998 65543321
Q ss_pred ccchhhccCCCCchh-----hhhhhcC-CCCcEEEEEecHHHHHhhcCC------------------------CCccc-c
Q 011856 296 YGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA------------------------GPMYQ-A 344 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~-----t~sK~lg-~G~~iG~~~~~~~i~~~l~~~------------------------~~~~~-~ 344 (476)
.... ....|++ .+||.+. +|+++|++.+++++++.+.+. .+..+ .
T Consensus 249 --~~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
T PRK00451 249 --KPPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKAT 324 (447)
T ss_pred --CCcc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccc
Confidence 0011 1234665 3667766 678899999999988875210 00011 1
Q ss_pred CCCCCcHHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE-EEecCCCcCchhh
Q 011856 345 GTLSGNPLAM-TAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF-FFTEGPVYNFEDA 419 (476)
Q Consensus 345 ~t~~~~~~~~-aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i-~~~~~~~~~~~~~ 419 (476)
.+++.+...+ .++..+++.+.+ ++..+++.++.+++.++|+++. ++ .+. .+.++.+ .+.-+
T Consensus 325 ~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~--~~~-~~~~~~~~~v~~~-------- 390 (447)
T PRK00451 325 SNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIG---GV--ELF-DGPFFNEFVVRLP-------- 390 (447)
T ss_pred ccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcC---CE--Eec-CCCeEEEEEEecC--------
Confidence 1222222122 233334443332 4556677777777777777642 11 111 1222221 11100
Q ss_pred cccchHHHHHHHHHHHHCCeEec----cCC---CcceEEeC--CCcHHHHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFA----PSQ---FEAGFTSL--AHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~----~~~---~~~~~~~~--~~t~e~i~~~~~~l~~~~ 471 (476)
. ...++.+.|+++|+... +.. ...+|++. .+|+++++++++.|++++
T Consensus 391 ---~--~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 391 ---K--PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ---C--CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 0 12578899999987642 111 13456654 589999999999998764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-15 Score=144.73 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.++++++. +.+.+++++||++|+..++... ...++.|++.++.|.+........... .
T Consensus 50 ~~npt~~~Le~~lA~le-g~e~ivvt~gg~~Ai~~~l~al--l~~Gd~Il~~~~~y~~~~~~~~~~~~~----------~ 116 (388)
T PRK08861 50 SGNPNRGLLEQTLSELE-SGKGAVVTNCGTSALNLWVSAL--LGPDDLIVAPHDCYGGTYRLFNTRANK----------G 116 (388)
T ss_pred CCCchHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHH--cCCCCEEEEcCCchHHHHHHHHHHHhc----------C
Confidence 45666788888888888 5799999999999999999842 345677877777776533222111100 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (476)
++ .+..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|. ++..
T Consensus 117 gi------~v~~vd~~d~e~l~~~i~~---~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 117 DF------KVQFVDQSDAAALDAALAK---KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ 183 (388)
T ss_pred Ce------EEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 11 2333444588999988863 5788888888888899998 8999999999999999999995 3211
Q ss_pred cccchhhccCCCCchh--hhhhhcCC--CCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
..+....|++ +++|.++| ++..|+++++ +++.+.++.. ........+|..+...+..|+-+ .-.
T Consensus 184 ------~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~---~~~~G~~~~p~~a~l~~rgl~Tl--~lR 252 (388)
T PRK08861 184 ------KPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW---GNCIGATGTPFDSYMTLRGIRTL--GAR 252 (388)
T ss_pred ------CCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH---HhccCCCCChHHHHHHHhcCCCH--HHH
Confidence 1122335766 57899985 3668888774 5566655421 11112345677666554444322 334
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
.++..++...+.+.|++.-. .|| ++ ....+.|.|+.|++.
T Consensus 253 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (388)
T PRK08861 253 MRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA 306 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence 45566666666666665310 011 00 023467889999985
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=144.70 Aligned_cols=249 Identities=17% Similarity=0.162 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
+..+...+|.++++++. +.+..++++||+.|+..++.. ....+++|++....|++..... +...|.
T Consensus 60 ~~~p~~~~le~~lA~l~-g~~~av~~~sG~~Ai~~al~a--l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~-------- 128 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLE-GAEDARGFASGMAAISSTVLS--FVEPGDRIVAVRHVYPDAFRLFETILKRMGV-------- 128 (389)
T ss_pred CCChhHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHHHcCc--------
Confidence 34566788999998888 555677779999999998874 2345677888887777643221 111121
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
++..++.+|++++++.+. ++++|++|.+.+..+.+.+ +++|.++|++||+++|+|++|...
T Consensus 129 -----------~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 129 -----------EVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred -----------eEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcch
Confidence 234445558899988873 4677888866555555544 999999999999999999999532
Q ss_pred -cccccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
... . . ..| .|++ +++|.+++ | ++.|++++++++++.++.......+ ...++..++.++..|+.+ +
T Consensus 190 ~~~~-p--~-~~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--~~~~~~~A~~~l~~L~tl--~ 259 (389)
T PRK05968 190 VFQR-P--I-TLG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--AKLSPFEAWLLLRGLRTL--P 259 (389)
T ss_pred hccC-c--h-hcC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--CCCChHHHHHHHcccCcH--H
Confidence 111 1 1 123 3655 68899985 4 5788888899988776531111112 245676666665555433 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEe-------------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG-------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
...++..++..++.+.|++. +.+..+ .+.|.++.|++.+ .....+|.+.|
T Consensus 260 ~r~~~~~~~a~~la~~L~~~----p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-------------~~~~~~f~~~L 322 (389)
T PRK05968 260 LRMKAHEASALEIARRLKAH----PVVERVCHPALANHPPAGLSGTSGLFSFIFRE-------------GIDVRAFADAL 322 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCccEEECCCCCCChHHhCCCCceEEEEEECC-------------HHHHHHHHHhC
Confidence 44455555666666666543 322222 2457788888742 12235677777
Q ss_pred HHCCeEe
Q 011856 435 LEEGVYF 441 (476)
Q Consensus 435 ~~~Gv~~ 441 (476)
...++.+
T Consensus 323 ~~~~~~~ 329 (389)
T PRK05968 323 KLFRLGV 329 (389)
T ss_pred CccEEec
Confidence 6555433
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=144.04 Aligned_cols=232 Identities=15% Similarity=0.097 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 214 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~ 214 (476)
++++...+|.++++++. + +.+++++||++|+..++.. ....+++|++.++.|++....+... ...
T Consensus 48 y~~p~~~~Le~~lA~l~-~-~~~v~~~sG~~Ai~~~l~a--ll~~Gd~Vl~~~~~y~~~~~~~~~~l~~~---------- 113 (366)
T PRK07582 48 ASNPTWRALEAALGELE-G-AEALVFPSGMAAITAVLRA--LLRPGDTVVVPADGYYQVRALAREYLAPL---------- 113 (366)
T ss_pred CCCccHHHHHHHHHHHc-C-CCEEEECCHHHHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHHHhcC----------
Confidence 46666788888898888 4 5677778899999988874 2445678888888887754332111 101
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (476)
| .++..++.++... ... +++++|++|..+|++|.+.+ +++|.++|+++|+++|+||+|. .+.
T Consensus 114 -G------~~v~~v~~~~~~~--~~~----~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~ 176 (366)
T PRK07582 114 -G------VTVREAPTAGMAE--AAL----AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG 176 (366)
T ss_pred -e------EEEEEECCCChHH--Hhc----cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc
Confidence 1 1244444444321 222 26788888887778887877 9999999999999999999984 221
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
. ..+....|++ +++|.++| |+++||+++ ++++++.+.. .........+|+.+..++..|+.+ +.
T Consensus 177 ~------~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~a~l~~r~l~tl--~~ 245 (366)
T PRK07582 177 Q------RPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER---WRLLAGAIPGPFEAWLAHRSLGTL--GL 245 (366)
T ss_pred c------CchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccccH--HH
Confidence 1 1112334665 68899974 689999987 4777776652 111222345677776666555433 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hcCC-ce---------EeeeeceeEEEEEe
Q 011856 369 TYEYLNKITGELTQGIIDAGK----KAGH-AI---------CGGYISGMFGFFFT 409 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~----~~~~-~~---------~v~~~g~~~~i~~~ 409 (476)
..++..++...+.+.|++... .+|. .. ...+.|.++.|++.
T Consensus 246 R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 457777888888888876421 0111 11 11257889999984
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-14 Score=138.38 Aligned_cols=284 Identities=14% Similarity=0.078 Sum_probs=175.4
Q ss_pred CHHHHHHHHHHHhhCC-CCCeE--EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVP-SIEMV--RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~-~~e~v--~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
.+.+.++.+++++.++ +++.+ +||+||||||..++..+|....++ +++....-|-+...++...+.++..++.. .
T Consensus 65 ~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~-~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d-~ 142 (374)
T PLN03032 65 RQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRMEAVKVPTL-P 142 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCc-EEEeCCCceeHHHHHHHHcCCCCeEeeeC-C
Confidence 4677788888888886 34555 999999999999999888654433 56666677776666665555443222111 1
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-----CEEEEeccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-----ALLIFDEVM 289 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-----~llI~DEv~ 289 (476)
.+. -|+++|++.+++....+.+|++.-.+++.|.+.| +++|.++|++|| +++++|-+|
T Consensus 143 ~g~-------------id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~ 205 (374)
T PLN03032 143 SGE-------------IDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGAL 205 (374)
T ss_pred CCc-------------CcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccc
Confidence 111 1899999999864335667777777788999999 999999999997 589999999
Q ss_pred cCc-cc--c--ccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCCCccc--cCCCCCc--HHHHHHHH
Q 011856 290 TGF-RL--A--YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSGN--PLAMTAGI 358 (476)
Q Consensus 290 ~g~-r~--g--~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~--~~t~~~~--~~~~aaa~ 358 (476)
.|+ -. . ..+. +....|.++++ |.++...++|.++.+++.++.+.....+.. ..|..++ ....++..
T Consensus 206 gg~~~p~~~~~~~~~---~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w 282 (374)
T PLN03032 206 FGLMMPFVSRAPEVT---FRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLW 282 (374)
T ss_pred hhhhhhccCCCcccC---CCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHH
Confidence 765 21 0 0111 11235766655 866656779999998887766543211111 1123333 23444555
Q ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 359 HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 359 aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
++|+.+.. .+..++..++.+++.++|++. +......... ..+.|..+ .. . . +
T Consensus 283 ~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~--~~V~f~~~-----------~~---~----~-~ 337 (374)
T PLN03032 283 YTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELS--STVVFERP-----------MD---E----A-F 337 (374)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCc--eEEEEcCC-----------Cc---H----h-H
Confidence 66666554 456677777888888888764 2221111122 22333321 11 1 1 2
Q ss_pred HCCeEeccCCCcce--EEeCCCcHHHHHHHHHHHHH
Q 011856 436 EEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 436 ~~Gv~~~~~~~~~~--~~~~~~t~e~i~~~~~~l~~ 469 (476)
.+|-.+.+.. ..+ .+...++++.+|++++-|++
T Consensus 338 ~~~w~l~~~~-~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 338 IKKWQLACEG-DIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred hheeeecccC-CEEEEEECCCCCHHHHHHHHHHHhc
Confidence 2455454432 233 33455788999999998875
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-15 Score=144.81 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
++...+|++.++++. +.+.+++++||++|+..++... ...+++||+.++.|.+......... ...|
T Consensus 60 npt~~~Le~~iA~le-~~~~~~~~~sG~~Ai~~~l~al--l~~GD~Vvv~~~~Y~~t~~l~~~~l----------~~~G- 125 (394)
T PRK09028 60 TPTHFAFQAAIVELE-GGAGTALYPSGAAAISNALLSF--LKAGDHLLMVDSCYEPTRDLCDKIL----------KGFG- 125 (394)
T ss_pred CchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHhh----------hhcc-
Confidence 344567888888776 4567899999999999998742 4567889988888866433211000 0011
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 296 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~ 296 (476)
.++..++.++.+.+++.++. ++++|++|.+.|++|.+.+ +++|.++|++||+++|+|++|. ++
T Consensus 126 -----i~v~~v~~~~~e~l~~~l~~---~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~p~---- 189 (394)
T PRK09028 126 -----IETTYYDPMIGEGIRELIRP---NTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWASPI---- 189 (394)
T ss_pred -----eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccccc----
Confidence 12334445567888888853 6889999998888888877 9999999999999999999994 32
Q ss_pred cchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
.+..+....|++ +..|.++| | .-.|+++.++++.+.+.... ... + ...+|..+...+..|+-+ .-.+++
T Consensus 190 --~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~-~~~-G-~~~~p~~a~l~~rgl~TL--~lR~~~ 262 (394)
T PRK09028 190 --NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS-YLM-G-QCTSPDDVYLAMRGLRTL--GVRLAQ 262 (394)
T ss_pred --cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH-Hhc-C-CCCCHHHHHHHHcccCcH--HHHHHH
Confidence 122223345766 68899985 3 66787777887766554210 111 2 245666666555444322 334566
Q ss_pred HHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 373 LNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
..++...+.+.|++... .|| +. ....+.|.|+.|++.
T Consensus 263 ~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 263 HEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 66677777777765321 011 00 012467889999985
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-14 Score=144.12 Aligned_cols=317 Identities=15% Similarity=0.062 Sum_probs=177.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-------CHHHH----HHHHHHHhhCC-CCCeEEEe---CCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-------CLLEN----VLAEMVISAVP-SIEMVRFV---NSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-------~~~~~----~la~~l~~~~~-~~e~v~~~---~sGseA~~~al~~ar~~~~ 180 (476)
.+|.+++++...+.+-...+.| .+... ...+.+++.+. ..+.+.++ +||++||..+++.. ...
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al--~~~ 123 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL--LQP 123 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh--cCC
Confidence 4688999988887652111111 11122 23456777775 34556566 79999999998842 233
Q ss_pred CceEEEEeCCCCCCchhHHhhcC-CCCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcCCCCeEEEEEcc
Q 011856 181 RERIIKFEGCYHGHADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep 254 (476)
++.|++ ...-||.......... ..+ ...+ ..-++..++++ |+++|++++++. +.+.|++.
T Consensus 124 gd~Ii~-~~~ehg~~l~~~~~l~~~~~------~~~~----~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~- 189 (452)
T PTZ00094 124 HDRIMG-LDLPSGGHLTHGFYTAKKKV------SATS----IYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG- 189 (452)
T ss_pred CCEEEe-cccccCCccccccccccccc------ccce----eeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe-
Confidence 455555 4445654332211000 000 0000 00011222222 899999999753 23345542
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~ 330 (476)
.++.|.+.| +++|.++|+++|+++++|++| .|. ..+ ..... .. ..|+++ ..|+|.|. ..|++.++++
T Consensus 190 -~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~~G~i~~~-~~~~~-~~-~~D~l~~S~hK~l~GP-~Gg~l~~~~~ 260 (452)
T PTZ00094 190 -ASAYPRDID----YKRFREICDSVGAYLMADIAHTSGLVAAG-VLPSP-FP-YADVVTTTTHKSLRGP-RSGLIFYRKK 260 (452)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEeccchhccccCC-CCCCC-CC-CCcEEEcCCccCCCCC-CceEEEEecc
Confidence 345677888 999999999999999999999 444 221 11111 11 357775 55988753 2466666765
Q ss_pred HHHhhcCCCCccccCC--CCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeE
Q 011856 331 IMEMVAPAGPMYQAGT--LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMF 404 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t--~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~ 404 (476)
+.+.+.+.-....+.. -+.++...++..++++.+.. +++.+++.++.++|.+.|.+.+. .+. ..+ .....
T Consensus 261 ~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~--~v~--~~~~~~~~~ 336 (452)
T PTZ00094 261 VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGY--DLV--TGGTDNHLV 336 (452)
T ss_pred cchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCc--EEe--cCCCCCceE
Confidence 5443321100001111 13466777778888988854 35778888899999988876421 111 111 11222
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC---------CCcceEEe------CCCcHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---------QFEAGFTS------LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------~~~~~~~~------~~~t~e~i~~~~~~l~~ 469 (476)
.+.+.... .....+...|.++||++... ..+.+|++ ..++++|++++++.|.+
T Consensus 337 ~v~~~~~~------------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~ 404 (452)
T PTZ00094 337 LVDLRPFG------------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDR 404 (452)
T ss_pred eecCCcCC------------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHH
Confidence 33332111 11245666676789999532 12356774 23459999999999999
Q ss_pred HHHH
Q 011856 470 VKMR 473 (476)
Q Consensus 470 ~~~~ 473 (476)
++..
T Consensus 405 ~~~~ 408 (452)
T PTZ00094 405 AVKL 408 (452)
T ss_pred HHHH
Confidence 8863
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=146.35 Aligned_cols=239 Identities=20% Similarity=0.208 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
+++...+|.+.++++. +.+..++++||++|+..+++.. ...+++|++....|++... .+... . + ..+
T Consensus 56 ~~pt~~~Le~~lA~l~-g~~~~l~~ssG~~Ai~~al~al--~~~Gd~Vl~~~~~Y~~t~~-~~~~~-l-------~-~~g 122 (425)
T PRK06084 56 MNPTNDVLEQRVAALE-GGVGALAVASGMAAITYAIQTI--AEAGDNIVSVAKLYGGTYN-LLAHT-L-------P-RIG 122 (425)
T ss_pred CCchHHHHHHHHHHHh-CCCceeEehhHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHH-HHHHh-c-------c-cce
Confidence 4555678888888887 4567788999999999999842 2346788888888887432 22210 0 0 001
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
..+..++.+|++++++.+++ ++++|++|++++++|.+.+ +++|.++|++||++||+||+|. ++.
T Consensus 123 ------i~v~~~d~~d~e~le~ai~~---~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~~~~-- 187 (425)
T PRK06084 123 ------IETRFAAHDDIAALEALIDE---RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVATPVL-- 187 (425)
T ss_pred ------eEEEEECCCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccccc--
Confidence 12444566689999999974 5788999988888999998 9999999999999999999995 221
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEec-HHH-HHhh-------cCCCCc----------------------
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-RDI-MEMV-------APAGPM---------------------- 341 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~-~~i-~~~l-------~~~~~~---------------------- 341 (476)
........|++ +++|.+++ |.++|++++. +.+ .... ....+.
T Consensus 188 ----~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (425)
T PRK06084 188 ----CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVV 263 (425)
T ss_pred ----CChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHH
Confidence 11122345765 78999985 6788877553 321 0110 000000
Q ss_pred -cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-Cce---------Eeee-eceeEE
Q 011856 342 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAI---------CGGY-ISGMFG 405 (476)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~---------~v~~-~g~~~~ 405 (476)
........+|..+..++..|+.+ +...++..++...+.+.|++... .+| ... ...+ .|.|+.
T Consensus 264 ~~~~~g~~l~~~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s 341 (425)
T PRK06084 264 PLRNMGAALSPFNAFLILQGLETL--ALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILS 341 (425)
T ss_pred HHHhcCCCCCHHHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEE
Confidence 00112245666666555554433 45667777778888888776421 111 100 1234 588999
Q ss_pred EEEe
Q 011856 406 FFFT 409 (476)
Q Consensus 406 i~~~ 409 (476)
|++.
T Consensus 342 ~~~~ 345 (425)
T PRK06084 342 FGIK 345 (425)
T ss_pred EEec
Confidence 9985
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=144.25 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+.++++. +.+++++++||++|+..++.. ....++.|++....|++........... +
T Consensus 51 ~np~~~~lE~~lA~l~-g~~~~l~~~sG~~Ai~~~l~~--ll~~GD~Vlv~~~~y~~~~~~~~~~~~~-----------g 116 (385)
T PRK08574 51 ENPTLRPLEEALAKLE-GGVDALAFNSGMAAISTLFFS--LLKAGDRVVLPMEAYGTTLRLLKSLEKF-----------G 116 (385)
T ss_pred CCccHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHH--HhCCCCEEEEcCCCchhHHHHHHHhhcc-----------C
Confidence 4555677888888887 567888899999999999874 2445677888877776643322111111 1
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g 295 (476)
+ ++..+. .|++++++.++++ ++++|++|.++|++|.+.+ +++|.++|+++|++||+|++| +++...
T Consensus 117 ~------~v~~~~-~d~~~l~~~i~~~--~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~~~ 183 (385)
T PRK08574 117 V------KVVLAY-PSTEDIIEAIKEG--RTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLLYR 183 (385)
T ss_pred c------EEEEEC-CCHHHHHHhcCcc--CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 1 122222 2688899888642 5788889988888999998 999999999999999999999 443110
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCc-EEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLP-VGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~-iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
. . ..| .|++ +++|.++| |-. .|++++ ++++.+.++... .......+|+.++.++..|+.+ +...
T Consensus 184 -~--l-~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~---~~~g~~~~p~~a~l~l~~l~tL--~~R~ 252 (385)
T PRK08574 184 -P--L-RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR---RRLGTIMQPFEAYLVLRGLKTL--EVRF 252 (385)
T ss_pred -h--h-hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH---HhcCCCCCHHHHHHHHcccCcH--HHHH
Confidence 0 1 123 3655 68899985 544 454544 677777665211 1112345677666666665543 3455
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 371 EYLNKITGELTQGIID 386 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (476)
++..++..++.+.|++
T Consensus 253 ~~~~~na~~la~~L~~ 268 (385)
T PRK08574 253 ERQCRNAMAIAEFLSE 268 (385)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5666677777777664
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=143.69 Aligned_cols=238 Identities=16% Similarity=0.128 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.++++++. +.+..+.++||++|+..+++.. ...+++|++.++.|.+.......... ..
T Consensus 58 ~~~p~~~~Le~~lA~~~-g~~~~i~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~t~~~~~~~~~----------~~ 124 (388)
T PRK07811 58 TGNPTRTALEEQLAALE-GGAYGRAFSSGMAATDCLLRAV--LRPGDHIVIPNDAYGGTFRLIDKVFT----------RW 124 (388)
T ss_pred CCCccHHHHHHHHHHHh-CCCceEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchHHHHHHHHhCc----------CC
Confidence 34556678888888887 4456677788999999999853 34567888888888654322211110 01
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ .++..++..|++++++.+++ ++++|++|.++|+.|.+.+ +++|.++|++||++||+||+|......
T Consensus 125 g------i~~~~~d~~d~e~l~~~i~~---~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~~~~ 191 (388)
T PRK07811 125 G------VEYTPVDLSDLDAVRAAITP---RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASPYLQ 191 (388)
T ss_pred C------eEEEEeCCCCHHHHHHhcCc---CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 1 12444555689999998864 5788888877777888877 999999999999999999999532111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
. ..+...|++ +++|.+++ | .+.|+++++ +++.+.+.. .........++..+..++..|+.+ +...
T Consensus 192 ~-----p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~L~tl--~~R~ 261 (388)
T PRK07811 192 Q-----PLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF---LQNGAGAVPGPFDAYLTLRGLKTL--AVRM 261 (388)
T ss_pred C-----chhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccCcH--HHHH
Confidence 1 112234655 68899985 3 567888764 666665541 111112234566555444444322 4455
Q ss_pred HHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 371 EYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
++..++...+.+.|++... .+| .. ....|.|.|+.|++.
T Consensus 262 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 262 DRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 6666777777777765321 011 10 012467889999985
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-15 Score=144.35 Aligned_cols=230 Identities=15% Similarity=0.125 Sum_probs=153.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|.++++++. +.++++.++||++|+..++. .+..+++||+....|.+........... .
T Consensus 51 ~~~p~~~~le~~lA~le-g~~~~v~~~sG~aAi~~~l~---~l~~GD~VI~~~~~yg~~~~~~~~~~~~----------~ 116 (364)
T PRK07269 51 TKNPTRAKLEETLAAIE-SADYALATSSGMSAIVLAFS---VFPVGSKVVAVRDLYGGSFRWFNQQEKE----------G 116 (364)
T ss_pred CCCccHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCcCchHHHHHHHHhc----------C
Confidence 34556678888888887 67899999999999999986 3456788998888887654322111000 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (476)
++ ...+ ..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||++. ++.
T Consensus 117 ~~-------~~~~-~~d~~~l~~~i~~---~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~~~- 180 (364)
T PRK07269 117 RF-------HFTY-ANTEEELIAAIEE---DTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSPIY- 180 (364)
T ss_pred cE-------EEEe-cCCHHHHHHhcCc---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 10 0111 1278999998863 5788888888888888887 9999999999999999999973 221
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
+...+...|++ +++|.++| | .-.|++++ ++++.+.++. .........+|+.+..++..|+.+ +..
T Consensus 181 -----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~---~~~~~G~~~s~~~a~l~~~~L~tL--~~r 250 (364)
T PRK07269 181 -----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY---NLNTTGAVLSPFDSYLLMRGLKTL--SLR 250 (364)
T ss_pred -----CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHcCCCcH--HHH
Confidence 12234446776 56799985 4 34667676 4667776642 111112356788877777666543 445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCc--eEeeeeceeEEEEEe
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHA--ICGGYISGMFGFFFT 409 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~--~~v~~~g~~~~i~~~ 409 (476)
+++.+++...+.+.|++ ++.+ ...++.|.++.|++.
T Consensus 251 ~~~~~~na~~~a~~L~~----~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 251 MERSTANAQEVVAFLKK----SPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHHHHHHHHHHHHHh----CCCccEEeCCCcCcEEEEEEC
Confidence 56666666666666654 4422 233678999999984
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-14 Score=144.37 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|+++++++. +.+.+++++||++|+..++... ...+++||+.+..|++.......... ..
T Consensus 54 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vl~~~~~y~~t~~~~~~~~~----------~~ 120 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALE-GGVAALAVASGQAAITYAILNL--AQAGDNIVSSSYLYGGTYNLFKHTLK----------RL 120 (418)
T ss_pred CCChhHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHHHH----------Hc
Confidence 45666788999999988 4578999999999999999843 34567888888888764332211100 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ .++..++.+|++++++.+++ ++++|++|.++|++|.+.+ +++|.++|++||+++|+||+|...
T Consensus 121 G------~~v~~v~~~d~~~l~~~l~~---~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~~--- 184 (418)
T TIGR01326 121 G------IEVRFVDPDDPEEFEKAIDE---NTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFATP--- 184 (418)
T ss_pred C------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCchh---
Confidence 1 12445556689999999864 5788889988888898888 999999999999999999999521
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEecH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRR 329 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~~ 329 (476)
.....+...+|++ +++|.+++ |+++|++++++
T Consensus 185 --~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 185 --YLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred --hcCCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 1111223346766 78999996 89999997754
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-13 Score=135.97 Aligned_cols=289 Identities=16% Similarity=0.090 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHhhCC-CCCe--EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~-~~e~--v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
.+.+.+..+++++++. ..++ .+||+||||+|..++..+|.+.+++. |+....-|.+...++...+.+...++...
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~-ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~- 141 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGT-LYYSKDTHYSVSKIARLLRIKSRVITSLP- 141 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcE-EEeCCCceehHHHHHHHcCCCCceeccCC-
Confidence 3567788888888885 2233 58999999999999998876544444 44445556656555554454332211110
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CEEEEeccccC
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEVMTG 291 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g---~llI~DEv~~g 291 (476)
.+ .-|+++|++.+++.+..+.+|++...+++.|.+.| +++|.++|++|| +++++|-+|.|
T Consensus 142 ~g-------------~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 142 NG-------------EIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred CC-------------cCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence 11 01899999999865445788888888888999999 999999999998 69999999987
Q ss_pred c-cccccchhhccCC--CCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCCCccc--cCCCCC--cHHHHHHHHHHHH
Q 011856 292 F-RLAYGGAQEYFGV--TPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSG--NPLAMTAGIHTLK 362 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~--~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~--~~t~~~--~~~~~aaa~aal~ 362 (476)
+ -.-.... ..+++ ..|.+++| |.+++-.++|.++.+++..+.+.....+.. ..|+.+ |....++..++|+
T Consensus 205 ~~~p~~~~~-~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~ 283 (380)
T PRK02769 205 MILPFVNNP-PPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIR 283 (380)
T ss_pred eeecccCcc-ccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHH
Confidence 5 2100000 01111 45777665 877656789999998887766542111100 012222 3345556666777
Q ss_pred HhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe
Q 011856 363 RLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (476)
Q Consensus 363 ~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (476)
.+.. .+..++..++.+++.++|++. ++..-.... ...+.|.. |+ ..+ .+|.
T Consensus 284 ~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~--~~~v~f~~-----------~~----~~~-----~~~w 337 (380)
T PRK02769 284 SLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPN--SITVVFPC-----------PS----ERI-----WKKW 337 (380)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCC--ceEEEEcC-----------CC----HHH-----HhCe
Confidence 6654 556677788888888888663 222111111 22233322 11 111 1555
Q ss_pred EeccCCC-cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 440 YFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 440 ~~~~~~~-~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+.+... -++.+...++++.+|++++-|.+.+.
T Consensus 338 ~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 338 HLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred eEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5554432 12344567799999999999987764
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-14 Score=139.03 Aligned_cols=310 Identities=16% Similarity=0.102 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
++-.+++.+.+..+..+ +.+...+|.+.+++++ +.+.+++++||++|+..+++.. ....+++||+...+|.+.. .
T Consensus 14 ~~e~~~~~~~l~~~~~~--~g~~~~~le~~la~~~-g~~~~v~~~sgt~al~lal~al-~~~~Gd~Viv~~~~~~~~~-~ 88 (379)
T PRK11658 14 DEELAAVKEVLRSGWIT--TGPKNQALEQAFCQLT-GNQHAIAVSSATAGMHITLMAL-GIGPGDEVITPSLTWVSTL-N 88 (379)
T ss_pred HHHHHHHHHHHHcCCcc--CCHhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHc-CCCCCCEEEECCCcHHHHH-H
Confidence 55677888888765432 3445678888888877 5678999999999999999842 1345678888888877653 3
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
.+...|..+...+...... .-|++++++.++. ++++|+ |++ ..|...+ +++|.++|+
T Consensus 89 ~~~~~G~~~v~vd~~~~~~-------------~~d~~~l~~~i~~---~tkav~--~~~-~~G~~~d----~~~i~~~a~ 145 (379)
T PRK11658 89 MIVLLGATPVMVDVDRDTL-------------MVTPEAIEAAITP---RTKAII--PVH-YAGAPAD----LDAIRAIGE 145 (379)
T ss_pred HHHHcCCEEEEEecCCCcC-------------CcCHHHHHHhccc---CCeEEE--EeC-CCCCcCC----HHHHHHHHH
Confidence 3334444332221110000 0178999998863 466666 332 2566666 899999999
Q ss_pred HhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh--hhcCCCCcEEEEEec-HHHHHhhcC---CCCc--------
Q 011856 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM-------- 341 (476)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~-~~i~~~l~~---~~~~-------- 341 (476)
+||++||+|++|+ |. ..|.. ...+|. ++.+|+ |.+.+| +.|+++.+ +++.+.++. .+..
T Consensus 146 ~~gi~vi~D~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 220 (379)
T PRK11658 146 RYGIPVIEDAAHAVGTYYKGRH--IGARGT--AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQT 220 (379)
T ss_pred HcCCeEEEECCCccCCeECCee--cCCCCC--EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhhc
Confidence 9999999999995 54 33321 112333 566665 667543 67777764 777665542 1100
Q ss_pred ----------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCceEe-eeeceeEEEEEe
Q 011856 342 ----------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG-GYISGMFGFFFT 409 (476)
Q Consensus 342 ----------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v-~~~g~~~~i~~~ 409 (476)
..+..+..+.+.++.++..++.+ ++..++.+++.+++.+.|.++... ...+... .....++.+.+.
T Consensus 221 ~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
T PRK11658 221 QGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVD 298 (379)
T ss_pred ccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEEC
Confidence 00112334455556666655544 456677777777787877654211 1011000 011122233332
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------C--------cceEEe--CCCcHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTS--LAHSSDDIQH 462 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------~--------~~~~~~--~~~t~e~i~~ 462 (476)
... ......++.+.|.++||.+.... . ..+.++ ...|++|++.
T Consensus 299 ~~~----------~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~ 368 (379)
T PRK11658 299 EER----------CGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDR 368 (379)
T ss_pred Ccc----------ccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHH
Confidence 110 01123678888999998654211 0 012333 4578999999
Q ss_pred HHHHHHHHHH
Q 011856 463 TITAAEKVKM 472 (476)
Q Consensus 463 ~~~~l~~~~~ 472 (476)
+++.|++++.
T Consensus 369 i~~~i~~~~~ 378 (379)
T PRK11658 369 VITALQQIAG 378 (379)
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-14 Score=140.42 Aligned_cols=305 Identities=16% Similarity=0.122 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH-------hccCCceEEEEeCCCCC
Q 011856 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-------AFTGRERIIKFEGCYHG 193 (476)
Q Consensus 121 ~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar-------~~~~~~~ii~~~~~yhg 193 (476)
.+++.+.+..+.... .....+|.+.+++++ +.+++++++||++|+..++..+. ....++.||+...+|.+
T Consensus 47 ~~a~~~~~~~~~~~~--G~~~~~fe~~lA~~~-g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a 123 (438)
T PRK15407 47 LQNLVDASLDFWLTT--GRFNDAFEKKLAEFL-GVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT 123 (438)
T ss_pred HHHHHHHHHhCcccC--ChhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH
Confidence 344555555543222 233556777777776 56789999999999999998542 23456788888888876
Q ss_pred CchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
..... ...|..+...+... -.++ |++++++.+.. ++++|++++..++ ..+ +++|
T Consensus 124 ~~~~v-~~~G~~pv~vdvd~--------------~~~~id~~~le~~i~~---~tkaVi~~~~~G~---p~d----l~~I 178 (438)
T PRK15407 124 TVNPI-IQNGLVPVFVDVEL--------------PTYNIDASLLEAAVSP---KTKAIMIAHTLGN---PFD----LAAV 178 (438)
T ss_pred HHHHH-HHcCCEEEEEecCC--------------CcCCcCHHHHHHHcCc---CCeEEEEeCCCCC---hhh----HHHH
Confidence 54333 33343222111100 0111 78999998863 6788888876443 333 8999
Q ss_pred HHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEecHH-HHHhhc---CCCCc-
Q 011856 273 RRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRRD-IMEMVA---PAGPM- 341 (476)
Q Consensus 273 ~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~~~-i~~~l~---~~~~~- 341 (476)
+++|++||++||+|++|+ |- ..|. ..|-.-|+.+|| |.+..| ..|+++.+++ +.+.++ ..+..
T Consensus 179 ~~la~~~gi~vIeDaa~a~G~~~~g~-----~~G~~gd~~~fSf~~~k~~~~g-eGG~l~t~d~~l~~~~~~~~~~G~~~ 252 (438)
T PRK15407 179 KAFCDKHNLWLIEDNCDALGSTYDGR-----MTGTFGDIATLSFYPAHHITMG-EGGAVFTNDPLLKKIIESFRDWGRDC 252 (438)
T ss_pred HHHHHHCCCEEEEECccchhhhcCCe-----eeeccCceEEEeCCCCCCcccc-CceEEEECCHHHHHHHHHHHHhCccc
Confidence 999999999999999995 32 2221 112223666554 777744 3588877644 443322 11100
Q ss_pred --------------------------------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011856 342 --------------------------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 342 --------------------------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
..+..+..+.+.++.++..|+.+ ++..++-+++.+++.+.|.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~ 330 (438)
T PRK15407 253 WCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLED 330 (438)
T ss_pred ccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCC
Confidence 01233456778888888888766 45777777888888888865321
Q ss_pred hcCCce---EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--------------c-----
Q 011856 390 KAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--------------E----- 447 (476)
Q Consensus 390 ~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------------~----- 447 (476)
....+. .....-.++.+.+.... .....++.+.|.++||-.+.... .
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~ 399 (438)
T PRK15407 331 FLILPEATPNSDPSWFGFPITVKEDA-----------GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGEL 399 (438)
T ss_pred ccccCcCCCCCeeEEEEEEEEECCcC-----------CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCC
Confidence 011111 11111112333332110 01136788999999986542110 0
Q ss_pred ---------ceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 448 ---------AGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 448 ---------~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+.++ ...|++|++.++++|++++.
T Consensus 400 P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 400 TNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred hHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 02333 34589999999999999875
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=137.74 Aligned_cols=298 Identities=11% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHhhCCC--CCeEEEeCCHH-HHHHHHHHHHHhcc-CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-C
Q 011856 138 CLLENVLAEMVISAVPS--IEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P 212 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~--~e~v~~~~sGs-eA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~ 212 (476)
..+..++.+.++++++- .+.++++++|| .++..++..++... +.+.||+.... |-....++...|..+...+. .
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCCeEEEeeeee
Confidence 34556777777777742 24799999999 68888888655332 34566666555 66677777777765443221 0
Q ss_pred CCCCCCCCCCCceeeccCC-CHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 213 DSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.... ++ |+++|++.|++.. +.+.+|+..|.....|...+ +++|.++|++||+++|+|++|.
T Consensus 183 d~~~-------------~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg 245 (444)
T TIGR03531 183 DGDE-------------LTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYG 245 (444)
T ss_pred cCcC-------------CCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCc
Confidence 0000 11 8999999998543 45666666666444445555 9999999999999999999996
Q ss_pred Cc--cccccchhhccCC-CCchhh--hhhhcCC-CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH
Q 011856 291 GF--RLAYGGAQEYFGV-TPDLTT--LGKIIGG-GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363 (476)
Q Consensus 291 g~--r~g~~~~~~~~g~-~pDi~t--~sK~lg~-G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~ 363 (476)
.. ..... ....+.. ..|+++ ++|.+.. |. .|.++. ++++++.+.. .+.+ .. .+..++.+....+..
T Consensus 246 ~~~~~~~~~-~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~---~y~g-~~-~~s~~~~~~~~ll~~ 318 (444)
T TIGR03531 246 LQSNKYMEL-INKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISK---SYPG-RA-SASPSLDVLITLLSL 318 (444)
T ss_pred CcChhhhhh-hhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHH---hccC-CC-CChHHHHHHHHHHHh
Confidence 32 11110 0011111 246554 6798874 44 455556 6778887763 2222 21 223455555555543
Q ss_pred hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 364 LKE--PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 364 ~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
-.+ +++.++..++.+++.+.|+++..+++.. .+++....-+++.+..-. ......+...|..++|-
T Consensus 319 G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-----------~~~~~~~g~~l~~~~v~ 387 (444)
T TIGR03531 319 GSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-----------GKDPTMLGSMLYSRRVT 387 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-----------ccCHHHHHHHHHhCCCC
Confidence 322 6778888899999999999988777632 223233333344442110 11124566666666551
Q ss_pred ----eccCC-----------C--c-------ceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 441 ----FAPSQ-----------F--E-------AGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 441 ----~~~~~-----------~--~-------~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
+.++. + + ++.. .+.++++|+|.++++|++++
T Consensus 388 g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 388 GPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 22221 0 0 1111 35779999999999999863
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-14 Score=138.98 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
.+..+++.+.++.+. ++.......++.+.+++++ +.++++.++||+.|++.|++.. ...++++||+..-+|.+.. .
T Consensus 5 ~e~~~~v~~~l~s~~-~~~~g~~~~~fE~~~a~~~-g~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~~-~ 80 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGW-LSTYGPYVEEFEKEFAEYF-GVKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPATA-S 80 (363)
T ss_dssp HHHHHHHHHHHHHTC-CSSSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THHH-H
T ss_pred HHHHHHHHHHHHhCC-ccCCCHHHHHHHHHHHHHh-CCCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHHH-H
Confidence 466778888888763 3222566677777777777 7899999999999999999953 4557788998877776643 3
Q ss_pred HHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 198 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
++...|..+...++ |....+ |++++++.++. ++++|++-+..|. ..+ +++|.++|
T Consensus 81 ai~~~G~~pv~~Di~~~~~~i--------------d~~~~~~~i~~---~t~ai~~~h~~G~---~~d----~~~i~~~~ 136 (363)
T PF01041_consen 81 AILWAGAEPVFVDIDPETLNI--------------DPEALEKAITP---KTKAILVVHLFGN---PAD----MDAIRAIA 136 (363)
T ss_dssp HHHHTT-EEEEE-BETTTSSB---------------HHHHHHHHHT---TEEEEEEE-GGGB----------HHHHHHHH
T ss_pred HHHHhccEEEEEeccCCcCCc--------------CHHHHHHHhcc---CccEEEEecCCCC---ccc----HHHHHHHH
Confidence 33444443322222 222222 89999999985 6788888887753 344 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhc---CCCC------
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVA---PAGP------ 340 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~---~~~~------ 340 (476)
++||++||.|-+|+ |- ..| ...|-.-|+.+|| |.+.+| -.|+++.+ +++.+.++ ..+.
T Consensus 137 ~~~~i~lIeD~a~a~g~~~~g-----~~~G~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (363)
T PF01041_consen 137 RKHGIPLIEDAAQAFGARYKG-----RPVGSFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFR 210 (363)
T ss_dssp HHTT-EEEEE-TTTTT-EETT-----EETTSSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECS
T ss_pred HHcCCcEEEccccccCceeCC-----EeccCCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccccc
Confidence 99999999999995 22 222 1223333776655 988744 35777775 45554443 2211
Q ss_pred cc-----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh--cCCceEee-eeceeEEEEEecCC
Q 011856 341 MY-----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGG-YISGMFGFFFTEGP 412 (476)
Q Consensus 341 ~~-----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~v~-~~g~~~~i~~~~~~ 412 (476)
.+ .+..+..+.+.++.+++.|+.+ ++..++-+++.+++.+.|.....- .+.+.... .....+.+.+.+..
T Consensus 211 ~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 288 (363)
T PF01041_consen 211 RYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA 288 (363)
T ss_dssp TTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG
T ss_pred cccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc
Confidence 11 1234566788888888877755 456666667777777777665211 01111111 11222333332210
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-c-----c----------------------eEEe--CCCcHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----A----------------------GFTS--LAHSSDDIQH 462 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~-----~----------------------~~~~--~~~t~e~i~~ 462 (476)
....+++.+.|.++||.+.+... + . +.++ ...+++|++.
T Consensus 289 -----------~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~ 357 (363)
T PF01041_consen 289 -----------LADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDY 357 (363)
T ss_dssp -----------CSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHH
T ss_pred -----------cchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH
Confidence 01246889999999998876531 0 0 1332 5678999999
Q ss_pred HHHHHH
Q 011856 463 TITAAE 468 (476)
Q Consensus 463 ~~~~l~ 468 (476)
++++|+
T Consensus 358 I~~~ir 363 (363)
T PF01041_consen 358 IAEAIR 363 (363)
T ss_dssp HHHHHH
T ss_pred HhhccC
Confidence 998874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=143.47 Aligned_cols=238 Identities=18% Similarity=0.187 Sum_probs=152.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+.++++. +.+..++++||+.|+..+++.. ...+++||+....|++.......... ..+
T Consensus 61 ~~p~~~~le~~lA~l~-g~~~al~~~SG~~Ai~~al~al--l~pGd~VIv~~~~y~~t~~~~~~~~~----------~~G 127 (427)
T PRK05994 61 TNPTNAVLEERVAALE-GGTAALAVASGHAAQFLVFHTL--LQPGDEFIAARKLYGGSINQFGHAFK----------SFG 127 (427)
T ss_pred CCccHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCcchhHHHHHHHHHH----------hcC
Confidence 3455678888888888 4566899999999999999853 44668888888888875322111000 001
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
..+..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|. ++
T Consensus 128 ------~~v~~vd~~d~~~l~~ai~~---~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~~~--- 191 (427)
T PRK05994 128 ------WQVRWADADDPASFERAITP---RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLASPY--- 191 (427)
T ss_pred ------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccccc---
Confidence 12445555689999998863 6889999998888999998 9999999999999999999995 22
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEec-HH-----------------------HHHhhc-------CC-CC
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-RD-----------------------IMEMVA-------PA-GP 340 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~-~~-----------------------i~~~l~-------~~-~~ 340 (476)
....+...+|++ +++|.+++ |-.+|+++.. .. +.+.+. .. ..
T Consensus 192 ---~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (427)
T PRK05994 192 ---LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLG 268 (427)
T ss_pred ---cCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHH
Confidence 122334557876 58899985 4456666442 21 111100 00 00
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-Cce---------E-eeeeceeEE
Q 011856 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAI---------C-GGYISGMFG 405 (476)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~---------~-v~~~g~~~~ 405 (476)
....+ ...+|..++.++..|+.+ +...++..++...+.+.|++... .+| ... . ..+.|.|+.
T Consensus 269 ~~~~G-~~~~~~~A~l~~~~l~tL--~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~s 345 (427)
T PRK05994 269 LRDLG-PAISPFNAFLILTGIETL--PLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFT 345 (427)
T ss_pred HHhcC-CCCCHHHHHHHHcCcccH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEE
Confidence 00111 135666666665555433 45667777778888887765421 111 000 1 246788999
Q ss_pred EEEe
Q 011856 406 FFFT 409 (476)
Q Consensus 406 i~~~ 409 (476)
|++.
T Consensus 346 f~l~ 349 (427)
T PRK05994 346 FGLK 349 (427)
T ss_pred EEec
Confidence 9985
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-14 Score=141.34 Aligned_cols=230 Identities=13% Similarity=0.158 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~ 214 (476)
++...+|+++++++. +.+.+++++||+.|+..++. ....+++||+.+..|.+..... +...|.
T Consensus 132 npt~~aLE~~lA~le-g~e~ai~~~SG~aAi~~il~---ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~---------- 197 (464)
T PLN02509 132 NPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV---------- 197 (464)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHH---HhCCCCEEEEcCCchhhHHHHHHHHHHHCCe----------
Confidence 467888999999887 56788888999998865554 3456788888888876643221 111121
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (476)
.+..++.+|++++++.++. ++++|++|.++|+.|.+.+ +++|.++|++||+++|+||+|. ++.
T Consensus 198 ---------~v~~vd~~d~e~l~~ai~~---~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 198 ---------VVKRVNTTNLDEVAAAIGP---QTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred ---------EEEEeCCCCHHHHHHhCCc---CCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcccccc
Confidence 2444556688999988853 6789999999888898877 9999999999999999999994 221
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
+ ...+...|++ +++|.++| | .-.|+++++ +++.+.+.... ...+ ...+|..++.++..|+.+ +.
T Consensus 262 -~-----~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~--~~~g-~~l~p~~A~l~lr~L~tL--~~ 330 (464)
T PLN02509 262 -S-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ--NSEG-SGLAPFDCWLCLRGIKTM--AL 330 (464)
T ss_pred -C-----ChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHH--HhcC-CCcCHHHHHHHHhhhhhH--HH
Confidence 1 1122345766 68899985 3 335666654 44444332100 0111 234777888777777765 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEE
Q 011856 369 TYEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFF 408 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~ 408 (476)
.+++..++..++.+.|++... .|| ++ ....+.|.|+.|++
T Consensus 331 R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 331 RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 667777888888888875321 011 10 12346688989987
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-14 Score=138.74 Aligned_cols=280 Identities=12% Similarity=0.113 Sum_probs=173.1
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~ 214 (476)
.+...+|++++++++ +.+.+++++||+.|+..++. ....++.|++.+..|.+...... ...|.
T Consensus 46 ~p~~~~le~~la~l~-g~~~~l~~~sG~~al~~~l~---ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~---------- 111 (378)
T TIGR01329 46 NPTRTALESLLAKLD-KADRAFAFSSGMAALDVITR---LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGV---------- 111 (378)
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHH---HhCCCCEEEEcCCCchHHHHHHHHHHHHcCc----------
Confidence 445678888888877 45788889999999887765 34566778887777765322111 11121
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (476)
++..++..|++++++.++. ++++|++|.+.|+.|.+.+ +++|.++|++||+++|+|++|. ++.
T Consensus 112 ---------~v~~vd~~d~~~le~~i~~---~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 112 ---------VVVHVDTTDLDKVKAALGP---KTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred ---------EEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 3445555689999998863 6889999988888999988 9999999999999999999983 321
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
. ...+...|++ +++|.++| ++..|+++++ +++.+.+.. .........+|..+..++..++.+ +.
T Consensus 176 ~------~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~---~~~~~G~~~~~~~a~l~~~~l~tl--~~ 244 (378)
T TIGR01329 176 C------NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF---LQNSTGSGLAPFDCWLLLRGIKTL--AI 244 (378)
T ss_pred C------ChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH---HHHhcCCcCCHHHHHHHHccCCCH--HH
Confidence 1 1112234765 67899985 3678888774 555555542 111112244566554433333211 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----cC-Cce---------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 369 TYEYLNKITGELTQGIIDAGKK----AG-HAI---------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~----~~-~~~---------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
..++..++...+.+.|++.-.. ++ +.. ...+.|.++.|++.+ .....+|...|
T Consensus 245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-------------~~~~~~~~~~L 311 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-------------VALSKRLVEAT 311 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-------------HHHHHHHHHhC
Confidence 5566667777777766643110 11 000 123567888888831 12245677777
Q ss_pred HHCCeEeccCCCcc---------------------------eEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 435 LEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 435 ~~~Gv~~~~~~~~~---------------------------~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...++.++.++... +|++... ||.+.+++-|++++++
T Consensus 312 ~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 312 KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFVT 375 (378)
T ss_pred cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHh
Confidence 55455554443222 3444333 5677778888887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=145.45 Aligned_cols=228 Identities=16% Similarity=0.074 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
.|.....++.+.+++++ +.++++| ++|+++++..++... ..++++|++..+ .|......+...|..+........
T Consensus 56 ~~~g~i~~~~~~~A~~~-ga~~~~~~~~Gst~a~~~~l~al--~~~gd~Vlv~~~-~h~s~~~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 56 DPTGPIKEAQELAARAF-GAKHTFFLVNGTSSSNKAVILAV--CGPGDKILIDRN-CHKSVINGLVLSGAVPVYLKPERN 131 (294)
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCcHHHHHHHHHHHc--CCCCCEEEEeCC-chHHHHHHHHHCCCEEEEecCccC
Confidence 45666677777777777 4455655 898999999998842 334455655554 455455555555543322211111
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~-vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
... -..-..|++++++.+++++ ++++ ++++| +..|.+.+ +++|.++|++||+++|+||+|...
T Consensus 132 ~~~--------~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p--~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 132 PYY--------GIAGGIPPETFKKALIEHP-DAKAAVITNP--TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred ccc--------CcCCCCCHHHHHHHHHhCC-CceEEEEECC--CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhh
Confidence 100 0000127999999997643 3444 44455 34788888 999999999999999999999542
Q ss_pred cccccchhhccCCCCchh--hhhhhcCCCCcEEEE-EecHHH--HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 366 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~-~~~~~i--~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 366 (476)
..+............|++ +++|+++ |++.|++ ..+.+. .+.+.. ......|.+.+.+.+++..++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~--~~~~~~ttsps~~~~asl~~a~~~~~~~ 273 (294)
T cd00615 197 RFHPILPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNE--ALNLHQSTSPSYLILASLDVARAMMALE 273 (294)
T ss_pred ccCcccCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHH--HHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 222111111112234665 6889874 5655444 344332 122221 112233556777778887788876643
Q ss_pred -CCHHHHHHHHHHHHHHHHH
Q 011856 367 -PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~ 385 (476)
+++.+++.++.+++++.|+
T Consensus 274 g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 274 GKELVEELIELALYARQEIN 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 5667777888888877765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-13 Score=138.06 Aligned_cols=320 Identities=17% Similarity=0.198 Sum_probs=180.1
Q ss_pred CCcHHHHHHHHHHHH--hcCCCCC------CCHHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHHHhc--c----
Q 011856 115 HADDQVLAALGETMK--KGTSFGA------PCLLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAF--T---- 179 (476)
Q Consensus 115 ~~~p~v~~a~~~~l~--~~~~~~~------~~~~~~~la~~l~~~~~~~e~-v~~~~sGseA~~~al~~ar~~--~---- 179 (476)
|-+|.+.+++.+... ..+.|.. ..+...++.++++++++ .+. .++.++|+.+...++.+++.+ .
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G-~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~ 159 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITG-MDAVTLQPAAGAHGELTGLLMIRAYHEARGDT 159 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhC-CCceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence 457888888876521 1222311 12556788888888884 334 444567777766655444332 1
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++|++.++ .|..+...+...|..+...+... .+ ..|+++|++.++. ++++|++...+ .+
T Consensus 160 ~~~~Vlv~~~-~hp~~~~~~~~~G~~vv~v~~~~-~~-------------~~D~e~L~~~i~~---~t~~V~v~~Pn-~t 220 (481)
T PRK04366 160 KRTEVIVPDS-AHGTNPASAAMAGFKVVEIPSNE-DG-------------LVDLEALKAAVGE---DTAALMLTNPN-TL 220 (481)
T ss_pred CCCEEEEcCC-ccHhHHHHHHHcCCEEEEeecCC-CC-------------CcCHHHHHhhccc---CCeEEEEeCCC-Cc
Confidence 2346777665 45555555555554433322210 01 1278999988863 46666554433 56
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhh--hhhhcC-----CCCcEEEEEecHHH
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIG-----GGLPVGAYGGRRDI 331 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t--~sK~lg-----~G~~iG~~~~~~~i 331 (476)
|.+ ..+ +++|.++|+++|+++|+|+++. +. .+.. ....+| .|+++ .-|.|+ ||--+|++.+++++
T Consensus 221 G~~--~~d-l~eI~~~a~~~gal~iVD~a~~~~~-~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~ 293 (481)
T PRK04366 221 GLF--ERN-ILEIAEIVHEAGGLLYYDGANLNAI-LGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL 293 (481)
T ss_pred ccc--chH-HHHHHHHHHHcCCEEEEEecChhhh-cccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhh
Confidence 655 112 9999999999999999999983 21 1111 112233 47764 349886 23347788888888
Q ss_pred HHhhcCC-----CCcc-----------ccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 332 MEMVAPA-----GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 332 ~~~l~~~-----~~~~-----------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
.+.+... +..+ ..-.++++.+.+.++...+..+..+ +..++...+.++++++|.++ . .
T Consensus 294 ~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~--~ 370 (481)
T PRK04366 294 APFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-Y--D 370 (481)
T ss_pred HhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-C--c
Confidence 7766310 0000 0111223445555555555554434 33455677788999999886 2 2
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEe--CCCcHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTS--LAHSSDDIQHTIT 465 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~--~~~t~e~i~~~~~ 465 (476)
+.. .+ ..+-.+.+...... .+.....++.+.|.++|+.+.... ...++++ ..+|++|||++++
T Consensus 371 ~~~--~~-~~~~~~~~~~~~~~-------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~ 440 (481)
T PRK04366 371 LPY--DR-PCMHEFVLSGKKLK-------ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIA 440 (481)
T ss_pred ccC--CC-CeeEEEEEECcccc-------ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHH
Confidence 221 11 11111111110000 000123678899999999876322 2234554 5779999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
.|+++.+++
T Consensus 441 ~l~~i~~~~ 449 (481)
T PRK04366 441 AMKQIAEEA 449 (481)
T ss_pred HHHHHHHHH
Confidence 999987764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=136.84 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|.+.++++. +.+..++++||+.|+..++... ...+++|++.++.|++..........
T Consensus 62 ~~p~~~~Le~~lA~le-g~~~al~~~sG~~Ai~~al~~l--l~~GD~Vlv~~~~y~~t~~~~~~~~~------------- 125 (431)
T PRK08248 62 MNPTTDVFEKRIAALE-GGIGALAVSSGQAAITYSILNI--ASAGDEIVSSSSLYGGTYNLFAHTLP------------- 125 (431)
T ss_pred CCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCchhhHHHHHHHHHH-------------
Confidence 4556678888888888 5678899999999999999742 44567888888777764432211100
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
..+.++..++..|++++++.+++ ++++|+++.+.|++|.+.+ +++|.++|+++|+++|+|+++. ++.
T Consensus 126 ---~~Gv~v~~vd~~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~~~~-- 193 (431)
T PRK08248 126 ---KLGITVKFVDPSDPENFEAAITD---KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFASPYL-- 193 (431)
T ss_pred ---hCCEEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCcccc--
Confidence 01113555566689999998864 5788888887788899998 8999999999999999999984 221
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEe
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~ 327 (476)
+.......|++ +++|.+++ |.++|+++.
T Consensus 194 ----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 194 ----LRPIEHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred ----CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence 11112235665 67899995 778888755
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=135.25 Aligned_cols=237 Identities=13% Similarity=0.050 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|++.++.... .+..++++||++|+..++.. ....+++||+.++.|.++....-.... ..|
T Consensus 62 gnPt~~~Le~~la~le~-~~~~v~~sSG~aAi~~~l~a--ll~~GD~Vlv~~~~Y~~~~~l~~~~l~----------~~G 128 (395)
T PRK05967 62 GTPTTDALCKAIDALEG-SAGTILVPSGLAAVTVPFLG--FLSPGDHALIVDSVYYPTRHFCDTMLK----------RLG 128 (395)
T ss_pred CChHHHHHHHHHHHHhC-CCCEEEECcHHHHHHHHHHH--hcCCCCEEEEccCCcHHHHHHHHHHHH----------hcC
Confidence 46777888888887763 44556777799999999874 245678899988888875432211100 001
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
.++..++.++.+.+++.+++ ++++|++|.+.|+.+.+.+ +++|.++|+++|+++|+|+++...
T Consensus 129 ------i~v~~vd~~~~e~l~~al~~---~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p---- 191 (395)
T PRK05967 129 ------VEVEYYDPEIGAGIAKLMRP---NTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP---- 191 (395)
T ss_pred ------eEEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc----
Confidence 12334444466788888864 5889999977777777776 999999999999999999999532
Q ss_pred cchhhccCCCCchh--hhhhhcCC--CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
..+..+....|++ +++|.++| ..-+|++++++++.+.+... ....+. ..+|..+...+..|+-+ +-..++
T Consensus 192 -~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~--~~~~G~-~~~p~da~l~~rgl~Tl--~lR~~~ 265 (395)
T PRK05967 192 -LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA--HGTLGL-CAGPDDTYQILRGLRTM--GIRLEH 265 (395)
T ss_pred -eecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH--HHHcCC-CCCHHHHHHHHcCcccH--HHHHHH
Confidence 1112222335665 68899985 36788778888766655421 111122 35666655544444322 233455
Q ss_pred HHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 373 LNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
..++...+.+.|++... .|| +. ....+.|.|+.|++.
T Consensus 266 ~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred HHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 55666666666665310 011 00 012467889999985
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-13 Score=130.01 Aligned_cols=197 Identities=23% Similarity=0.281 Sum_probs=130.3
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC---C---CCCCCHH-HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---S---FGAPCLL-ENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~---~~~~~~~-~~~la~~l~~~~~-~~e~v~~~~sGseA~~~a 171 (476)
-|+|..+. |-.+|.|.+|+.+.+.... + ++.-.+. .++-++.++++.. +..+|+||+++||++..+
T Consensus 45 vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlv 118 (428)
T KOG1549|consen 45 VYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLV 118 (428)
T ss_pred EEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHH
Confidence 46665443 4468999999999887631 1 1111222 3445556666666 555699999999999999
Q ss_pred HHH-HHhccC-Cc-eEEEEeCCCCCCchhHHhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 172 LRL-ARAFTG-RE-RIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 172 l~~-ar~~~~-~~-~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
++- ++.+.. .+ .||.++..|-...+++..+. |..+..++++ ..+. -|++.+++.++. +
T Consensus 119 l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~-------------~d~~~~~~~i~~---~ 181 (428)
T KOG1549|consen 119 LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGL-------------VDISKLREAIRS---K 181 (428)
T ss_pred HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-cccc-------------ccHHHHHHhcCC---C
Confidence 984 333332 33 55555444433344443332 3322222222 1111 178889999874 8
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhh--hhcCC-CCcEE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGG-GLPVG 323 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s--K~lg~-G~~iG 323 (476)
+++|.+..++++.|.+.| +++|.++|+++|+.+++|-+|. .|. ...+--.+.+|+++++ |.+|. | +|
T Consensus 182 T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa---vG~-i~vDV~eln~D~~s~s~HK~ygp~~--iG 251 (428)
T KOG1549|consen 182 TRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA---VGK-IPVDVQELNADFLSISAHKIYGPPG--IG 251 (428)
T ss_pred ceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh---cCC-ccccHHHcCchheeeecccccCCCc--ce
Confidence 999999999999999999 9999999999999999999994 221 1122234467877654 99984 4 99
Q ss_pred EEEecH
Q 011856 324 AYGGRR 329 (476)
Q Consensus 324 ~~~~~~ 329 (476)
++.+++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 998876
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-13 Score=133.46 Aligned_cols=326 Identities=12% Similarity=-0.003 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhc--C--CCCCCCHHHHHHHHHHHhhCCCC---CeEEE--eCCHHHHHHHHHHHHHhcc-------
Q 011856 116 ADDQVLAALGETMKKG--T--SFGAPCLLENVLAEMVISAVPSI---EMVRF--VNSGTEACMGVLRLARAFT------- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~--~~~~~~~~~~~la~~l~~~~~~~---e~v~~--~~sGseA~~~al~~ar~~~------- 179 (476)
.+|++.+++.+.+... . ..+...+.+++..+++++.++.. +++.| |+||||||..|++.+|...
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999998888642 1 12223477888899999988622 45666 7999999999998775320
Q ss_pred C---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 180 G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 180 ~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
+ ....|+....-|-+...+....|..+..++.....+. -|+++|++.+++ ++.+|++...+
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~-------------vd~~~L~~~i~~---~t~lV~~t~g~ 196 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYV-------------IDPEQVVEAVDE---NTIGVVCILGT 196 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCcee-------------eCHHHHHHHHhh---CCeEEEEEeCC
Confidence 1 1234555555565554444444433222111110000 189999999974 57788888888
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c---ccccchhhccCCCCchhhhh--hhcCCCCcEEE
Q 011856 257 GNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R---LAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGA 324 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r---~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~ 324 (476)
++.|.+.| +++|.++|+++ |+++++|-+|.|+ . .+.. ....-....|.++++ |.+.+...+|+
T Consensus 197 t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~-~~~~~~~~~DSis~s~HK~~~~P~g~G~ 271 (431)
T TIGR01788 197 TYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL-EWDFRLPRVKSINVSGHKYGLVYPGVGW 271 (431)
T ss_pred CCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc-hhhcCCCCceEEEECchhccCCCCCcEE
Confidence 99999999 99999999999 9999999999875 2 1211 111001134667665 86544456899
Q ss_pred EEecHH--HHHhhcCCCCcccc----CCCCCcHH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 325 YGGRRD--IMEMVAPAGPMYQA----GTLSGNPL--AMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 325 ~~~~~~--i~~~l~~~~~~~~~----~t~~~~~~--~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
++.+++ +.+.+.....+... .+..++.. ...+....|..+.. ++..++..++.+++.++|++.. . +
T Consensus 272 l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~-~--~ 348 (431)
T TIGR01788 272 VIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLG-P--F 348 (431)
T ss_pred EEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCC-C--E
Confidence 877654 33333211001100 12222211 22223333433332 5566677777888888777641 1 1
Q ss_pred ceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEE--eCCCcHHHHHHH
Q 011856 394 AICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDIQHT 463 (476)
Q Consensus 394 ~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~--~~~~t~e~i~~~ 463 (476)
....+ ....++.|.+..... ......++.+.|.++|+.+..... ..+|+ ...++++.++++
T Consensus 349 el~~~~~~~~iV~Fr~~~~~~---------~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~ 419 (431)
T TIGR01788 349 EIISDGSGIPLVAFKLKDDAD---------PGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELL 419 (431)
T ss_pred EEeeCCCCceEEEEEeCCCCC---------CCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHH
Confidence 11111 233444555432110 011235688889999986432221 12344 346689999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
++.|++++..+
T Consensus 420 ~~~~~~~~~~~ 430 (431)
T TIGR01788 420 IEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-13 Score=133.25 Aligned_cols=316 Identities=16% Similarity=0.124 Sum_probs=181.3
Q ss_pred CcHHHHHHHHHHHHhcCC--CCC----CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS--FGA----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~--~~~----~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
-++++.+++.+.+..... +.. ..+....+.+.+++++ +.+.++++|||+.|+..++. .+..+++||+.++
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~-Gae~a~vv~sgtaAl~l~l~---~l~~GdeVIvs~~ 173 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT-GAEDALVVNNNAAAVLLALN---ALAAGKEVIVSRG 173 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEEEEcch
Confidence 468999999988876421 111 1233457778888777 66789999999999999886 4567788888765
Q ss_pred C-CC-CCch---hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCCCCeEEEEEcccCCC--C
Q 011856 190 C-YH-GHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 259 (476)
Q Consensus 190 ~-yh-g~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi~ep~~~~--~ 259 (476)
. |+ |... ..+...|.. +..++. .+++++++.+++ ++++|+++...+. .
T Consensus 174 e~~~~ggs~~i~~~~~~~G~~-------------------l~~v~~~~~t~~~dle~aI~~---~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 174 ELVEIGGAFRIPDVMRQAGAR-------------------LVEVGTTNRTHLRDYEQAINE---NTALLLKVHTSNYRIE 231 (464)
T ss_pred hhhhcCcchhhHHHHHHCCcE-------------------EEEECCCCCCCHHHHHHhcCc---cCeEEEEEcCCCcccc
Confidence 3 32 2111 122222321 222222 268889998864 5777777765442 3
Q ss_pred C--cccCCHHHHHHHHHHHHHhCCEEEEeccccCcc-cc------ccchhhccCCCCchhhhh--hhcCCCCcEEEEEec
Q 011856 260 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGFR-LA------YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 328 (476)
Q Consensus 260 G--~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r-~g------~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~ 328 (476)
| ...+ +++|.++|++||+++|+|....-+. .+ ....++......|++++| |.++|. ..|+++++
T Consensus 232 G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~ 306 (464)
T PRK04311 232 GFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGK 306 (464)
T ss_pred ccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEc
Confidence 4 3456 9999999999999999999531111 11 111122223456888777 999864 37888999
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCH------------HHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGT------------YEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~------------~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+++++.++.. + ..-.+..+-...++-.++|..+.+ +.+ .+++.++...+.+.|++.... +..
T Consensus 307 ~~li~~l~~~-~--~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~-~~~ 382 (464)
T PRK04311 307 KELIARLKKH-P--LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA-AFA 382 (464)
T ss_pred HHHHHHHhhc-h--hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC-Cee
Confidence 9999877631 1 111122233444455555553321 112 266667777777777664211 111
Q ss_pred eEe------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH--CCeEeccCCCcceEE-eCCCcHHHHHHHHH
Q 011856 395 ICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE--EGVYFAPSQFEAGFT-SLAHSSDDIQHTIT 465 (476)
Q Consensus 395 ~~v------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~~~~~~~~~~~-~~~~t~e~i~~~~~ 465 (476)
..+ -|.|.+-...+.. +.-...+......++.+.|++ ..|+.+. ....+.+ .-+..++|++.+++
T Consensus 383 ~~~~~~~~~~gggs~p~~~~~~-----~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~-~~~~~~ld~r~~~~~~~~~~~~ 456 (464)
T PRK04311 383 VEVVPSFSQVGGGSLPVDRLPS-----AAVTLTPKDRSLEALAARLRLLPPPVIGRI-EDGRLLLDLRTLEEEDEERLAA 456 (464)
T ss_pred EEEEEccCccCCCCCcCCCCCe-----EEEEEeCCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHHH
Confidence 111 1223332211100 000001111123566677765 3566653 2344555 45668899999999
Q ss_pred HHHHHHH
Q 011856 466 AAEKVKM 472 (476)
Q Consensus 466 ~l~~~~~ 472 (476)
+|.+++.
T Consensus 457 ~~~~~~~ 463 (464)
T PRK04311 457 ALLEALN 463 (464)
T ss_pred HHHHHhh
Confidence 9998764
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-13 Score=132.32 Aligned_cols=310 Identities=17% Similarity=0.111 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
++-.+++.+.+..+... ......+|.+.+++++ +.++.++++||++|+..+++.. ....++.||+....|++.. .
T Consensus 10 ~~~~~~v~~~~~~~~~~--~g~~~~~le~~la~~~-g~~~~v~~~sgt~al~~~l~al-~~~~Gd~Viv~~~~~~~~~-~ 84 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT--QGPTVPAFEEALAEYV-GAKYAVAFNSATSALHIACLAL-GVGPGDRVWTTPITFVATA-N 84 (380)
T ss_pred HHHHHHHHHHHhcCCcc--CChhHHHHHHHHHHHH-CCCeEEEEcCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHH-H
Confidence 45577888888765322 2344567777788777 5567778889999999999842 1345677888887776643 3
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
.+...|..+...+.....+ ..|++++++.+++.+ +++++|++.. ..|...+ +++|.++|
T Consensus 85 ~~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~~l~ 144 (380)
T TIGR03588 85 CALYCGAKVDFVDIDPDTG-------------NIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIAALA 144 (380)
T ss_pred HHHHcCCEEEEEecCCCcC-------------CcCHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHHHHH
Confidence 3333444332221100000 127899999997421 2456666432 2566666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCC--CCchhhhh----hhcCCCCcEEEEEe-cHHHHHhhcC---CCCc---
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGV--TPDLTTLG----KIIGGGLPVGAYGG-RRDIMEMVAP---AGPM--- 341 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~--~pDi~t~s----K~lg~G~~iG~~~~-~~~i~~~l~~---~~~~--- 341 (476)
++||++||+|++|+ |. ..+ ...|. .-|++++| |.++.| ..|+++. ++++.+.++. .+..
T Consensus 145 ~~~~~~lI~D~a~a~g~~~~~-----~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~ 218 (380)
T TIGR03588 145 KKHGLKIIEDASHALGAEYGG-----KPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDP 218 (380)
T ss_pred HHcCCEEEEECCCcccCccCC-----EeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCc
Confidence 99999999999995 22 111 12232 23777654 888754 4666655 4666665431 0000
Q ss_pred -----------c-----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce--Eeeeecee
Q 011856 342 -----------Y-----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGM 403 (476)
Q Consensus 342 -----------~-----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~ 403 (476)
. .+..+..+.+.++.+++.|+.+ ++..++-+++.+++.+.|..+..-..... .......+
T Consensus 219 ~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 296 (380)
T TIGR03588 219 LLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHL 296 (380)
T ss_pred ccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEE
Confidence 0 0112334566666666666654 56677778888888888876421011100 00011122
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------------------------cceEEe--CCCc
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAHS 456 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~~~~~~--~~~t 456 (476)
+.+.+... +....+++.+.|.++||.++.... ..+.++ ...|
T Consensus 297 ~~i~~~~~-----------~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~ 365 (380)
T TIGR03588 297 YPILLDQE-----------FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALT 365 (380)
T ss_pred EEEEECCc-----------CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCC
Confidence 23333210 001236788889999987653210 112343 3468
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVK 471 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~ 471 (476)
++|++.++++|++++
T Consensus 366 ~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 366 LEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=136.83 Aligned_cols=256 Identities=14% Similarity=0.076 Sum_probs=159.7
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (476)
.+.+-.+++.+.+..+..|+ ..++...+|++.++++. +.+.++.++||+.|+.+++... ...+++||+....|.+.
T Consensus 37 ~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~le-g~~~av~~~SG~aAi~~al~al--l~~GD~VI~~~~~Y~~T 113 (432)
T PRK06702 37 DTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELE-GGVGAVATASGQAAIMLAVLNI--CSSGDHLLCSSTVYGGT 113 (432)
T ss_pred CCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHh--cCCCCEEEECCCchHHH
Confidence 33444444444343332222 12566788999998888 5567899999999999999842 45678898888888774
Q ss_pred chhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 195 ADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 195 ~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
.... +...|. ++..+..+ |+++++++++. ++++|++|...++.+.+.+ ++
T Consensus 114 ~~~~~~~l~~~Gi-------------------~v~~vd~~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v~D----i~ 167 (432)
T PRK06702 114 FNLFGVSLRKLGI-------------------DVTFFNPNLTADEIVALAND---KTKLVYAESLGNPAMNVLN----FK 167 (432)
T ss_pred HHHHHHHHHHCCC-------------------EEEEECCCCCHHHHHHhCCc---CCeEEEEEcCCCccccccC----HH
Confidence 4332 111222 23344443 88999999974 6788999987777888888 99
Q ss_pred HHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC-CCcEEEE-EecH----------HHHH---
Q 011856 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAY-GGRR----------DIME--- 333 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~-~~~~----------~i~~--- 333 (476)
+|.++|++||+++|+|+++. ....+..+..-.||+ +++|.++| +--+|++ +... ++.+
T Consensus 168 ~I~~iA~~~gi~livD~T~~-----tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~ 242 (432)
T PRK06702 168 EFSDAAKELEVPFIVDNTLA-----TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP 242 (432)
T ss_pred HHHHHHHHcCCEEEEECCCC-----chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence 99999999999999999984 122233333345665 79998885 3334433 3221 1110
Q ss_pred ------------------hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hc
Q 011856 334 ------------------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KA 391 (476)
Q Consensus 334 ------------------~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~ 391 (476)
.... ......+ .+.+|+.+..++..|+.+ +...++..++...+.+.|++... .+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g-~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~V~y 318 (432)
T PRK06702 243 SYHGVSYVQNFGAAAYIVKARV-QLLRDYG-NCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEWVNY 318 (432)
T ss_pred cccccchhhccchhhHHHHHHH-HHHHHcc-CCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence 0000 0011222 377888877777666533 45566667788888887776421 11
Q ss_pred C-Cce---------Ee-eeeceeEEEEEe
Q 011856 392 G-HAI---------CG-GYISGMFGFFFT 409 (476)
Q Consensus 392 ~-~~~---------~v-~~~g~~~~i~~~ 409 (476)
| +.. .. .|.|.|+.|++.
T Consensus 319 Pgl~~~p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 319 PGLDSNENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred CCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 1 111 12 357889999985
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=134.56 Aligned_cols=235 Identities=11% Similarity=0.063 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
++...+|.++++++.+ .+..++++||+.|+..++. .+..+++|++.++.|++........... .|
T Consensus 53 ~p~~~~le~~lA~l~g-~~~~v~~~sG~~ai~~~l~---~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~----------~G- 117 (390)
T PRK08064 53 NPTREALEDIIAELEG-GTKGFAFASGMAAISTAFL---LLSKGDHVLISEDVYGGTYRMITEVLSR----------FG- 117 (390)
T ss_pred ChhHHHHHHHHHHHhC-CCCeEEECCHHHHHHHHHH---HhCCCCEEEEccCccchHHHHHHHHHHH----------cC-
Confidence 4556778888888874 4456777889999988885 3456788999888887754322211000 01
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (476)
.++..++..|++++++.+++ ++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|..+.....
T Consensus 118 -----~~v~~v~~~d~~~l~~~l~~---~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~~~ 185 (390)
T PRK08064 118 -----IEHTFVDMTNLEEVAQNIKP---NTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPLLQKP 185 (390)
T ss_pred -----CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcccccCc
Confidence 13445555688999888864 5788999988888899988 99999999999999999999953311001
Q ss_pred chhhccCCCCchh--hhhhhcCC--CCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 298 GAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 298 ~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
. .+| .|++ +++|.++| |.-.|++++ ++++++.++. .........+|..+...+..++.+ +...++
T Consensus 186 --~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~---~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~ 255 (390)
T PRK08064 186 --L-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF---LQNSFGAVLGVQDCWLVLRGLKTL--HVRLEH 255 (390)
T ss_pred --h-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHcccCcH--HHHHHH
Confidence 1 123 4665 67899974 344676655 4677777652 111112233444444332222211 334455
Q ss_pred HHHHHHHHHHHHHHHhh--h--cCC-c---------eEeeeeceeEEEEEe
Q 011856 373 LNKITGELTQGIIDAGK--K--AGH-A---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~--~--~~~-~---------~~v~~~g~~~~i~~~ 409 (476)
..++...+.+.|++... + ++. . ....+.|.++.|++.
T Consensus 256 ~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 256 SSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred HHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 56666666666665321 0 110 0 123467889999884
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=141.16 Aligned_cols=304 Identities=13% Similarity=0.153 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH----HHHHHHHHHHHhccC--CceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRFVNSGT----EACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~~~sGs----eA~~~al~~ar~~~~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
+...++.+++++++ +.+.|.|+++++ +|+..+++......| ++++|+....-||.....+...|..+..++..
T Consensus 568 ~~~~~~r~~la~i~-g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d 646 (993)
T PLN02414 568 EMFEDLGDLLCEIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTD 646 (993)
T ss_pred HHHHHHHHHHHHHh-CCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccC
Confidence 44568888888888 679999998888 888888885422211 23467777788998776666655544332221
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (476)
..|. -|+++|+++++.+.+++++|++...++.+|...+ +++|.++|+++|+++++|-++. +
T Consensus 647 -~~G~-------------vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~a 708 (993)
T PLN02414 647 -AKGN-------------INIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANMNA 708 (993)
T ss_pred -CCCC-------------cCHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCHHh
Confidence 1121 1899999999876567898888887778898888 9999999999999999999993 1
Q ss_pred ccccccchhhccCCCCchhhh--hhhcC-----CCCcEEEEEecHHHHHhhcCCC--C----c---c--ccCCCC----C
Q 011856 292 FRLAYGGAQEYFGVTPDLTTL--GKIIG-----GGLPVGAYGGRRDIMEMVAPAG--P----M---Y--QAGTLS----G 349 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~--sK~lg-----~G~~iG~~~~~~~i~~~l~~~~--~----~---~--~~~t~~----~ 349 (476)
. .+.........|++++ .|.|+ ||-.+|.+.++++++..+-... . . . ..+|.. +
T Consensus 709 ~----~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g 784 (993)
T PLN02414 709 Q----VGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWG 784 (993)
T ss_pred c----cCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhh
Confidence 1 0111111233577755 58776 2345899999988776553110 0 0 0 012322 3
Q ss_pred cHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 350 NPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 350 ~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
+.+.+.++...+..+..+.+ .++...+..|++++|.+. +++... ...|. +.-+|.-+- ..+. ......
T Consensus 785 ~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~~-~~~~~-~~hEfv~~~-~~l~---~~~g~~ 855 (993)
T PLN02414 785 SALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLFR-GKNGT-CAHEFIIDL-RPFK---NTAGIE 855 (993)
T ss_pred hHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCcccc-CCCCC-eeeeEEEec-cccc---cccCCC
Confidence 33455555555665554555 677778888999998763 222211 11121 111221100 0000 000011
Q ss_pred HHHHHHHHHHCCeEeccCC---CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 427 FARFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 427 ~~~~~~~l~~~Gv~~~~~~---~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+.+.|++.|+...... .+.+++ .-..+++|||+++++|..+..+.
T Consensus 856 ~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~ 908 (993)
T PLN02414 856 PEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEI 908 (993)
T ss_pred HHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 2568888999998754322 234455 45679999999999998887654
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-13 Score=132.63 Aligned_cols=236 Identities=17% Similarity=0.112 Sum_probs=146.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|.+.++++. +.+..++++||+.|+..++. ....+++||+.++.|.+.+........ ..
T Consensus 47 ~~~p~~~~Le~~lA~l~-g~~~~~~~~sG~aai~~~~~---~l~~Gd~Viv~~~~y~~~~~~~~~~~~----------~~ 112 (377)
T PRK07671 47 TGNPTRAALEELIAVLE-GGHAGFAFGSGMAAITAVMM---LFSSGDHVILTDDVYGGTYRVMTKVLN----------RF 112 (377)
T ss_pred CCChHHHHHHHHHHHHh-CCCceEEeCCHHHHHHHHHH---HhCCCCEEEECCCccchHHHHHHHHHh----------cC
Confidence 35666788888888887 45667788889998877654 345578899888888765432221110 00
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
| .++..++..|++++++.++. ++++|++|..+|+.|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 113 G------~~v~~v~~~d~~~l~~ai~~---~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~~~~ 179 (377)
T PRK07671 113 G------IEHTFVDTSNLEEVEEAIRP---NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTPYWQ 179 (377)
T ss_pred C------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 1 12444555689999998863 5788888877777888877 999999999999999999999532111
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
. ......|++ +++|.++| + .-.|++++ ++++++.+.. .........+|..+..++..++.+ ...+
T Consensus 180 ~-----p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~---~~~~~g~~~~~~~a~l~~~~l~tl--~~R~ 249 (377)
T PRK07671 180 S-----PISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHF---VQNSTGGILGPQDSWLLLRGLKTL--GIRM 249 (377)
T ss_pred C-----hhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHH---HHHhhcCCCCHHHHHHHHcCcChH--HHHH
Confidence 1 112234665 68899984 2 33555555 5667776652 111112234565555544444332 3345
Q ss_pred HHHHHHHHHHHHHHHHHhh----hcCC-c---------eEeeeeceeEEEEE
Q 011856 371 EYLNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFF 408 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~----~~~~-~---------~~v~~~g~~~~i~~ 408 (476)
++..++...+.+.|++... .+|. . ....+.|.++.|++
T Consensus 250 ~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 250 EEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 5666677777776665310 0110 0 01346788999988
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=134.36 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.++++++. +.+..++++||+.|+.+++. .+..+++||+.++.|++.......... ..+
T Consensus 48 ~~p~~~~Le~~la~l~-g~~~al~~~SG~~Al~~~l~---~l~pGd~Vi~~~~~y~~t~~~~~~~~~----------~~g 113 (380)
T PRK06176 48 GNPTRFALEELIADLE-GGVKGFAFASGLAGIHAVFS---LFQSGDHVLLGDDVYGGTFRLFDKVLV----------KNG 113 (380)
T ss_pred CChhHHHHHHHHHHHh-CCCCEEEECCHHHHHHHHHH---HcCCCCEEEEcCCChhHHHHHHHHHHH----------hcC
Confidence 4556678888888887 45677888999999987665 345678888888888664322211100 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
.++..++..|++++++.++. ++++|++|.+.|+.|.+.+ +++|.++|++||+++|+|++|.......
T Consensus 114 ------i~v~~vd~~d~e~l~~ai~~---~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~~~~~ 180 (380)
T PRK06176 114 ------LSCTIIDTSDLSQIKKAIKP---NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATPYYQN 180 (380)
T ss_pred ------eEEEEcCCCCHHHHHHhcCc---CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccccccCC
Confidence 12344455589999988863 6788898888888888888 9999999999999999999995321111
Q ss_pred cchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhc
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVA 336 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~ 336 (476)
..+...|++ +++|.+++ | .-.|+++++ +++.+.++
T Consensus 181 -----p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 181 -----PLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred -----ccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 123345766 57799985 4 345556664 55656554
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-12 Score=130.98 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+.++++. +.+..+.++||+.|+..++... ...+++||+.+..|.+........... |
T Consensus 45 g~p~~~~lE~~la~le-g~~~~v~~ssG~~Ai~~~l~al--l~~Gd~Vv~~~~~y~~t~~~~~~l~~~-----------G 110 (397)
T PRK05939 45 GTPTTAALEAKITKME-GGVGTVCFATGMAAIAAVFLTL--LRAGDHLVSSQFLFGNTNSLFGTLRGL-----------G 110 (397)
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHH--cCCCCEEEECCCccccHHHHHHHHHhc-----------C
Confidence 3566778888888887 5556778888999999998742 345677888776665532211111111 1
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
.++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+|++|. +..
T Consensus 111 ------~~v~~v~~~d~e~l~~~l~~---~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~~~-- 175 (397)
T PRK05939 111 ------VEVTMVDATDVQNVAAAIRP---NTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSPWL-- 175 (397)
T ss_pred ------CEEEEECCCCHHHHHHhCCC---CCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccccc--
Confidence 13455555689999999863 6889999998888998877 9999999999999999999984 321
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEec
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR 328 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~ 328 (476)
+.......|++ +++|.+++ |..+|+++..
T Consensus 176 ----~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 176 ----FRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred ----cCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 11112234655 78999996 7888888664
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.8e-13 Score=129.91 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|+++++++- +.+.+++++||+.|+.+++.. .+..+++|++....|.+....+-.... ..|
T Consensus 60 ~nPt~~~le~~la~LE-g~~~a~~~~SGmaAi~~~~~~--ll~~GD~Vv~~~~~Yg~t~~l~~~~l~----------~~G 126 (395)
T PRK08114 60 GTLTHFSLQEAMCELE-GGAGCALYPCGAAAVANAILA--FVEQGDHVLMTGTAYEPTQDFCSKILS----------KLG 126 (395)
T ss_pred CChhHHHHHHHHHHHh-CCCeEEEEhHHHHHHHHHHHH--HcCCCCEEEEeCCCcHHHHHHHHHHHH----------hcC
Confidence 3566678888888876 667889999999999998873 245567787777677665433211000 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRL 294 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~r~ 294 (476)
+ ++..++..|.+++++.++. ++++|++|.+.|+.|.+.+ +++|.++|+++| +++|+|.+++ +
T Consensus 127 i------~v~~vd~~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a---~ 190 (395)
T PRK08114 127 V------TTTWFDPLIGADIAKLIQP---NTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA---A 190 (395)
T ss_pred c------EEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc---c
Confidence 1 3555666689999999964 6899999999999999999 999999999985 9999999994 1
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
+.. +.......|++ +..|.++| | .-.|.++.++++.+.+... ....+. ..+|..+...+..|+-+ +-.+
T Consensus 191 p~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~--~~~~G~-~~~p~~a~l~~rgl~TL--~lR~ 263 (395)
T PRK08114 191 GVL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN--SYLMGQ-MVDADTAYMTSRGLRTL--GVRL 263 (395)
T ss_pred ccc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH--HHhccC-CCCHHHHHHHHcCCCcH--HHHH
Confidence 111 33333346776 57799986 3 6677777788776655421 111122 44666655544444322 3345
Q ss_pred HHHHHHHHHHHHHHHHHhh----hcC-Cc---------eEeeeeceeEEEEEe
Q 011856 371 EYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
++..++...+.+.|++... .|| ++ ....+.|.|+.|++.
T Consensus 264 ~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK08114 264 RQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence 6666777777777765321 011 00 113467889999985
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-12 Score=127.87 Aligned_cols=310 Identities=15% Similarity=0.146 Sum_probs=175.1
Q ss_pred CcHHHHHHHHHHHHhcCC--C----CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS--F----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~--~----~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
-++++.+++.+.+..... + +........+.+.+++++ +.+..++++||+.|+..++. .+..+++||+.++
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~-gae~alvv~sg~aAi~l~l~---~l~~GdeVIvs~~ 168 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT-GAEDALVVNNNAAAVLLALN---TLAKGKEVIVSRG 168 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHH---HhCCcCEEEECCC
Confidence 479999999998876321 1 112234467788888887 56677889999999998886 4567788888766
Q ss_pred CC---CCCch--hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCCCCeEEEEEcccCCC--C
Q 011856 190 CY---HGHAD--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 259 (476)
Q Consensus 190 ~y---hg~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi~ep~~~~--~ 259 (476)
.+ .|... ..+...|. .+..+++ .+++++++.++. ++++|+++...+. .
T Consensus 169 e~v~~ggs~~i~~~~~~~G~-------------------~~~~v~~~~~~~l~dle~aI~~---~T~lv~~~h~sN~~~~ 226 (454)
T TIGR00474 169 ELVEIGGSFRIPDVMEQSGA-------------------KLVEVGTTNRTHLKDYEDAITE---NTALLLKVHTSNYRIV 226 (454)
T ss_pred hhhhhcchhhHHHHHHHcCC-------------------EEEEeCCCCCCCHHHHHHhcCc---CCEEEEEEccCccccc
Confidence 53 23211 11222222 2333333 368889988863 5777777665432 4
Q ss_pred C--cccCCHHHHHHHHHHHHHhCCEEEEeccccCc--cccc------cchhhccCCCCchhhhh--hhcCCCCcEEEEEe
Q 011856 260 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAY------GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 327 (476)
Q Consensus 260 G--~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~------~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~ 327 (476)
| .+.+ +++|.++|++||+++|+|... |. ..+. ...++......|++++| |.++|. ..|++++
T Consensus 227 G~~~~~d----l~~I~~la~~~g~~vivD~~s-G~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g 300 (454)
T TIGR00474 227 GFTEEVS----IAELVALGREHGLPVMEDLGS-GSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVG 300 (454)
T ss_pred CCCCCCC----HHHHHHHHHHcCCeEEEECCC-cccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEEE
Confidence 5 3667 999999999999999999642 22 1111 11112223356899888 999763 3788899
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--C------------CHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--P------------GTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~------------~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
++++++.+.+. ++ .-.+-..-+..++..+++..+-+ + --.++..++...+.+.|++... .++
T Consensus 301 ~~~~i~~l~~~-~l--~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~-~~~ 376 (454)
T TIGR00474 301 KKELIERLKKN-PL--TRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG-PGF 376 (454)
T ss_pred CHHHHHhhhhc-hh--HHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc-CCc
Confidence 99988876531 11 11112223334444455543322 1 1123666677777777776421 111
Q ss_pred ceEe------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC--eEeccCCCcceEE-eCCCcHHHHHHHH
Q 011856 394 AICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPSQFEAGFT-SLAHSSDDIQHTI 464 (476)
Q Consensus 394 ~~~v------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~~~~~~~~~~~~-~~~~t~e~i~~~~ 464 (476)
...+ -|.|.|-...+.. +.-...+......++.+.|++.. |+.+. ....+.+ .-+..++|++.++
T Consensus 377 ~~~~~~~~~~~ggg~~p~~~l~~-----~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~-~~~~~~ld~r~~~~~~~~~~~ 450 (454)
T TIGR00474 377 ELEIVPGLSQVGGGSLPDERLPS-----YAVTLTPDGLSAEKLEARLRELPPPIIGRI-EDDRFLLDLRTLLEDEEELLI 450 (454)
T ss_pred eEEEEEcCCcccCCCCcCCCCCe-----EEEEEecCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHH
Confidence 1111 1233332221110 00000111112356667776543 55542 2334555 4566788888888
Q ss_pred HHH
Q 011856 465 TAA 467 (476)
Q Consensus 465 ~~l 467 (476)
++|
T Consensus 451 ~~~ 453 (454)
T TIGR00474 451 EAL 453 (454)
T ss_pred HHh
Confidence 765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=132.18 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSP 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~ 215 (476)
.++....|.+.|+++. +.+.++.++||..|+..++.. ....+++|+.....|++....+-.. ...
T Consensus 53 gnPt~~~le~~la~Le-~g~~a~~~~SGmaAi~~~l~~--ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~----------- 118 (386)
T PF01053_consen 53 GNPTVRALEQRLAALE-GGEDALLFSSGMAAISAALLA--LLKPGDHIVASDDLYGGTYRLLEELLPRF----------- 118 (386)
T ss_dssp C-HHHHHHHHHHHHHH-T-SEEEEESSHHHHHHHHHHH--HS-TTBEEEEESSSSHHHHHHHHHCHHHT-----------
T ss_pred ccccHHHHHHHHHHhh-cccceeeccchHHHHHHHHHh--hcccCCceEecCCccCcchhhhhhhhccc-----------
Confidence 4677788888888877 568899999999999998874 2345788888888888743322211 111
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~ 294 (476)
+ .++..++..|++++++.++. ++++|++|++.|+...+.+ +++|+++|+++| +++|+|.+...
T Consensus 119 g------v~v~~~d~~d~~~l~~~l~~---~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at--- 182 (386)
T PF01053_consen 119 G------VEVTFVDPTDLEALEAALRP---NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT--- 182 (386)
T ss_dssp T------SEEEEESTTSHHHHHHHHCT---TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH---
T ss_pred C------cEEEEeCchhHHHHHhhccc---cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc---
Confidence 1 13556666789999999985 7999999999888888888 999999999998 99999999841
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecH--HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRR--DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~--~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
...+..+....|++ +++|.++| | .-.|.++++. ++++.++.. ....+. ..+|..+...+..|+-+ +-
T Consensus 183 --p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~--~~~~G~-~~~p~da~ll~rgl~Tl--~~ 255 (386)
T PF01053_consen 183 --PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF--RRLLGA-TLSPFDAWLLLRGLRTL--PL 255 (386)
T ss_dssp --TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH--HHHHT--B--HHHHHHHHHHHTTH--HH
T ss_pred --eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcch--hhhcCc-cchHHHHHHHhcCCCcH--HH
Confidence 11222223335766 68899985 3 4577777654 677665421 111111 33455544444443322 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEec
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 410 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~ 410 (476)
..++..++...+.+.|++. +.+.. ..+.|.++.|++.+
T Consensus 256 R~~~~~~nA~~lA~~L~~h----p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~ 311 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEH----PKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG 311 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTS----TTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence 4566667777777776653 33222 23667799999964
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=131.87 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh-hcCCCCccCCCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPG 216 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~~ 216 (476)
++...+|.+.++++. +.+..++++||+.|+..++... ...++.||+....|.+....... .... +
T Consensus 68 ~p~~~~Le~~lA~l~-g~~~av~~sSG~aAi~~al~al--l~~Gd~Vv~~~~~y~~t~~~~~~~l~~~-----------G 133 (436)
T PRK07812 68 NPTQDVVEQRIAALE-GGVAALLLASGQAAETFAILNL--AGAGDHIVSSPRLYGGTYNLFHYTLPKL-----------G 133 (436)
T ss_pred CchHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEeCCcchHHHHHHHHHhhcC-----------e
Confidence 455678888888887 5677899999999999999732 34567777776666553322111 0111 1
Q ss_pred CCCCCCCceeecc-CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011856 217 VPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (476)
Q Consensus 217 ~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (476)
..+..++ ..|++++++.++. ++++|++|.+.|+.|.+.+ +++|.++|++||+++|+|+++. +..
T Consensus 134 ------i~v~~vdd~~d~e~l~~ai~~---~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~~~~- 199 (436)
T PRK07812 134 ------IEVSFVEDPDDLDAWRAAVRP---NTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIATPYL- 199 (436)
T ss_pred ------EEEEEECCCCCHHHHHHhCCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 1233332 3478888888863 6789999999999999999 9999999999999999999984 221
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-CCcEEEEEe
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~ 327 (476)
........|++ +++|.++| |--+|+++.
T Consensus 200 -----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 200 -----IRPLEHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred -----CCchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence 11122235765 68899984 433555544
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=128.86 Aligned_cols=309 Identities=13% Similarity=-0.021 Sum_probs=173.0
Q ss_pred cHH-HHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeC-CHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 117 DDQ-VLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 117 ~p~-v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~--~e~v~~~~-sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
+|+ |.+|+.+.+....+.+ ...+...+..+.+++++.. .++|+|+. |||++++.++... ..+++.+++.. +.
T Consensus 24 ~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l--~~~~~~~vi~~-g~ 100 (378)
T PRK03080 24 RPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL--LGARRVDHLAW-ES 100 (378)
T ss_pred ChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc--CCCCcceEEEe-CH
Confidence 566 8888875543211211 1234556777778777752 34788885 9999999999842 22223344433 56
Q ss_pred CCCchhH-H-hhcCC-CCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 192 HGHADPF-L-VKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 192 hg~~~~~-~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
|+..... + ...|. .+..+..+ ++. .-|++++ +. ++.|.+..+.+.+|.+.|
T Consensus 101 f~~~~~~~~~~~~g~~~v~~~~~~--~g~------------~~d~~~i----~~----~~~V~~~h~~t~tG~~~p---- 154 (378)
T PRK03080 101 FGSKWATDVVKQLKLEDPRVLEAD--YGS------------LPDLSAV----DF----DRDVVFTWNGTTTGVRVP---- 154 (378)
T ss_pred HHHHHHHHHHhhcCCCCceEeccC--CCC------------CCCHhhc----CC----CCCEEEEecCCccceecc----
Confidence 6653222 1 11232 22221111 110 0144442 21 334677777778899999
Q ss_pred HHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHHHHhhcCCCC-----
Q 011856 269 LNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGP----- 340 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~~~~~----- 340 (476)
+++|.+ ++||+++|+|-+|+ |.. ..-.+ + .|++++ -|.|++...+|++..+++.++.+.+...
T Consensus 155 i~~I~~--~~~g~~~vVDa~qs~G~~---pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~ 225 (378)
T PRK03080 155 VARWIG--ADREGLTICDATSAAFAL---PLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIP 225 (378)
T ss_pred chhhcc--ccCCCeEEEecccccccC---CCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCc
Confidence 888888 78999999999995 210 11111 1 377654 4998754459999999999887654210
Q ss_pred --------------ccccCCCCC-cHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-e
Q 011856 341 --------------MYQAGTLSG-NPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGGY-I 400 (476)
Q Consensus 341 --------------~~~~~t~~~-~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~ 400 (476)
.+..+|.+. +..+..+..++|+.+.+. ...++.+++.+++++.|+++..-......-.. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s 305 (378)
T PRK03080 226 KFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRS 305 (378)
T ss_pred hhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccC
Confidence 011223332 334445556778877653 33455566666676666654210011000011 1
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.++.+.+.+ .+.....++...++++|+++..++ ...+|++ ..+|++|++.++++|+++++++
T Consensus 306 ~~i~~~~~~~-----------~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 374 (378)
T PRK03080 306 NTSVTLDFVD-----------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERL 374 (378)
T ss_pred ccEEEEEcCC-----------chHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2344444321 000111345666777888876543 2457775 5679999999999999988754
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=125.58 Aligned_cols=343 Identities=14% Similarity=0.068 Sum_probs=182.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAA-LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a-~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
...|||+.+-.++ +.+.++ +...+.-...|+ -++...+|.+.+++++ +.+.+++++||+.|...+..
T Consensus 37 ~~v~iDLltDsgT-------~aMs~~q~a~~~~GDe~ya-g~~s~~~lE~~va~~~-G~~~av~v~sGT~Al~ll~~--- 104 (450)
T TIGR02618 37 EDVYIDLLTDSGT-------NAMSDKQWAGLMMGDEAYA-GSRNFYHLERTVRELY-GFKYVVPTHQGRGAENLLSQ--- 104 (450)
T ss_pred CceEEEcccCCCc-------HHHHHHHHHHhhhcchhhc-CCCcHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHH---
Confidence 3468999877543 566666 443332222232 2333456666676666 78899999999999887543
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC--C-CHHHHHHHHhcC-CCCeEEEEE
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--N-DVSALENLFENN-KGEIAAIIL 252 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-d~~~le~~l~~~-~~~~a~vi~ 252 (476)
...++++.+ ..+.|...+...+...|............+. ....|+ | |+++|++.++.. .+.++.|.+
T Consensus 105 l~l~pGDeV-psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~-------~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~ 176 (450)
T TIGR02618 105 IAIKPGDYV-PGNMYFTTTRYHQEKNGATFVDIIIDEAHDA-------QLNIPFKGNVDLKKLQKLIDEVGADKIPYICL 176 (450)
T ss_pred hCCCCcCEE-CCceeHHHHHHHHHhCCeEEEeeeccccccc-------ccCCCCCCCcCHHHHHHHhccccCcccCceEE
Confidence 344555544 3333334333334444442111100000000 000111 1 899999999853 224555555
Q ss_pred cccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccch----hhccCCC-----------Cchhhhhhhc
Q 011856 253 EPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA----QEYFGVT-----------PDLTTLGKII 316 (476)
Q Consensus 253 ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~----~~~~g~~-----------pDi~t~sK~l 316 (476)
+-.++ .||..++.. .+++|+++|++||+.||.|-++.- ..+ .+. ..+.+.. .|. +++|+.
T Consensus 177 e~t~N~~GG~pvs~~-~l~~I~elA~~~Gl~vi~DaAR~~-gNA-~~I~~re~g~~~~~i~ei~~e~~~~aD~-~~~S~~ 252 (450)
T TIGR02618 177 AVTVNLAGGQPVSMA-NMREVRELCEAHGIKVFYDATRCV-ENA-YFIKEREQGYEDKSIAEILKEMMSYADG-CTMSGK 252 (450)
T ss_pred EEecccCCCeeCCHH-HHHHHHHHHHHcCCEEEEEccchh-hCh-hhhhcccccccCCCHHHHHHHHhccCcE-EEEeec
Confidence 44444 456655444 499999999999999999998841 000 000 0011211 233 455555
Q ss_pred C-CCCcEEEEEe--cHHHHHhhcCCCCcc-ccCCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 317 G-GGLPVGAYGG--RRDIMEMVAPAGPMY-QAGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 317 g-~G~~iG~~~~--~~~i~~~l~~~~~~~-~~~t~~~-~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
- +|.|+|.+++ ++++++.++.....+ .+-|+++ ..-.+.|...+|+...+..+.++.....++|.+.|.+.
T Consensus 253 Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~---- 328 (450)
T TIGR02618 253 KDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA---- 328 (450)
T ss_pred cCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC----
Confidence 4 3457777755 778888776432222 1224433 11123333334554444566677777788999998876
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEec---cC---C-----------CcceEEe-
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFA---PS---Q-----------FEAGFTS- 452 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~---~~---~-----------~~~~~~~- 452 (476)
+++...+..|..+.++...- .+...++.--...+.-.| ++.||--. .. . ...+|+.
T Consensus 329 Gvpv~~p~ggh~V~vda~~~-----lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlai 403 (450)
T TIGR02618 329 GVPIVEPVGGHAVFLDARRF-----LPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTI 403 (450)
T ss_pred CCcccCCCCcceEEEEhHHh-----CCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeecc
Confidence 33332345667777765431 111111111123344333 34454221 11 0 0123442
Q ss_pred --CCCcHHHHHHHHHHHHHHHHH
Q 011856 453 --LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 453 --~~~t~e~i~~~~~~l~~~~~~ 473 (476)
-.-|.+++|...+++..+.+.
T Consensus 404 prr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 404 PRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred ccccccHhHHHHHHHHHHHHHhh
Confidence 355899999999999988754
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-12 Score=129.31 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|++.++++. +.+.+++++||++|+..++... ...+++||+....|++.......... ..|
T Consensus 62 ~~p~~~~le~~lA~l~-g~~~av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~~l~----------~~G 128 (433)
T PRK08134 62 SNPTVAVLEERVAALE-GGVGAIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHYTLR----------RFG 128 (433)
T ss_pred cChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHHHHh----------hCC
Confidence 4566778888888888 4556899999999999998743 44567788887777764322211000 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
..+..++.+|++++++.++. ++++|+++.+.++.|.+.+ +++|.++|++||+++|+|.+|. ++.
T Consensus 129 ------i~v~~vd~~d~~~l~~~i~~---~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~~~~-- 193 (433)
T PRK08134 129 ------IETTFVKPGDIDGWRAAIRP---NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTTPYL-- 193 (433)
T ss_pred ------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCccccc--
Confidence 13445555689999999974 6889999988888999999 9999999999999999999994 331
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-CCcEEEEEe
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~ 327 (476)
+.......|++ +..|.++| |-.+|+++.
T Consensus 194 ----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 194 ----LRPFEHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred ----CCchhcCCCEEEeccccccCCCCCceEEEEE
Confidence 11123345766 46698885 545666543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=118.09 Aligned_cols=164 Identities=26% Similarity=0.230 Sum_probs=110.2
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCC
Q 011856 142 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 220 (476)
Q Consensus 142 ~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~ 220 (476)
.++.+.+++.+. +.+++++++||++|+..+++.++ ..+++|++.++.|++.........|..+...+.......
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--- 77 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG--- 77 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCcc---
Confidence 466677777773 57789999999999999999542 236778888888888653333333433322111110000
Q ss_pred CCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch
Q 011856 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (476)
Q Consensus 221 ~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (476)
..+.+.+++... .++++++++++.++++|...+ +++|.++|+++|+++|+|++|.++ .....
T Consensus 78 ---------~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-- 140 (170)
T cd01494 78 ---------GLDVAILEELKA--KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG-- 140 (170)
T ss_pred ---------chhhhhhhhccc--cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--
Confidence 002224444332 347899999999999998888 799999999999999999999876 33221
Q ss_pred hhccCCCCchhhhh--hhcCCCCcEEEEEec
Q 011856 300 QEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 328 (476)
Q Consensus 300 ~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~ 328 (476)
.......+|+++.| |.+++ .++|+++++
T Consensus 141 ~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 141 VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 11223357888655 99987 778988764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-11 Score=118.75 Aligned_cols=290 Identities=13% Similarity=0.035 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHhhCCC-CC--eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVPS-IE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~-~e--~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 213 (476)
..+.+.++-+++++++.. .+ .-.+++||||+|..|+..||.+..+ .+++....-|-+..-++...|.++..++...
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDTLV 209 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence 357788899999998862 22 4689999999999999999986443 4666666777777777776666544433211
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-----EEEEecc
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA-----LLIFDEV 288 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~-----llI~DEv 288 (476)
...+ |+++|++.|.+....+.+|+..--..+.|.+.| +++|.++|++||+ +|.+|-+
T Consensus 210 ~g~m--------------D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA 271 (470)
T PLN02263 210 SGEI--------------DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGA 271 (470)
T ss_pred CCcC--------------cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEecc
Confidence 1111 899999988764333455555554456889999 9999999999997 9999999
Q ss_pred ccCc-cc-cccchhhccC--CCCchhhh--hhhcCCCCcEEEEEecHHHHHhhcCCCCccc--cCCCCCc--HHHHHHHH
Q 011856 289 MTGF-RL-AYGGAQEYFG--VTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSGN--PLAMTAGI 358 (476)
Q Consensus 289 ~~g~-r~-g~~~~~~~~g--~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~--~~t~~~~--~~~~aaa~ 358 (476)
+.|+ -. -.. . ..++ ...|-+++ -|.++..++.|.++.+++.++.+.....+.. -.|..++ -......-
T Consensus 272 ~GG~~lPf~~~-~-~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW 349 (470)
T PLN02263 272 LFGLMMPFVKR-A-PKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 349 (470)
T ss_pred chhhHhhhccc-c-cccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHH
Confidence 9887 31 101 0 1111 12454443 4988877899999998776655532111100 0122221 12233444
Q ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 359 HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 359 aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
.+|+.+.. .+..++..++.+++.++|++. ++..-.....+. +.|..+ . ..+.
T Consensus 350 ~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~--V~f~~p-----------~--------~~~~ 404 (470)
T PLN02263 350 YTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSST--VVFERP-----------K--------DEEF 404 (470)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceE--EEEecC-----------c--------hHHh
Confidence 55555444 445555566677777777764 322222222222 223211 1 1123
Q ss_pred HCCeEeccCCCc-ceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 436 EEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 436 ~~Gv~~~~~~~~-~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+|-.+...+.. ++.+...++.+.+|++++-|++...
T Consensus 405 ~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 405 VRRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred hcceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 466666554321 2333455688999999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-12 Score=135.58 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc---C--CceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT---G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~---~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
+...++.+++++++ +.+.+.+ .++|+.++.+++..+|.+. + ++++++...+-|++....+...|..+...+..
T Consensus 542 ~~i~e~q~~l~elt-G~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d 620 (954)
T PRK05367 542 ELIDQLEAWLAEIT-GYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACD 620 (954)
T ss_pred HHHHHHHHHHHHHH-CCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCC
Confidence 45678888999988 5555555 4577888877776666541 1 23456666777877766666656544332221
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (476)
. .+. -|+++|++.++++++++++|++......|+...+ +++|.++|+++|+++++|.++. +
T Consensus 621 ~-~G~-------------iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 621 E-NGN-------------IDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred C-CCC-------------cCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh
Confidence 1 111 1799999999865456776655443333444467 9999999999999999999994 2
Q ss_pred c-cccccchhhccCCCCchhhhh--hhcC-----CCCcEEEEEecHHHHHhhcCCC--C-ccc--cCCCCCcHH----HH
Q 011856 292 F-RLAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAG--P-MYQ--AGTLSGNPL----AM 354 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~t~s--K~lg-----~G~~iG~~~~~~~i~~~l~~~~--~-~~~--~~t~~~~~~----~~ 354 (476)
+ .... ...+ ..|+++++ |.|+ ||--+|.+.+++.+...+-... . ... .++....+. .+
T Consensus 683 l~~l~~---pg~~--GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~ 757 (954)
T PRK05367 683 QVGLAR---PGDI--GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASIL 757 (954)
T ss_pred ccCCCC---hhhc--CCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHH
Confidence 2 1110 1122 35777655 9875 2344788887876655443110 0 000 122222222 22
Q ss_pred HHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHhhhcCCceEeeeecee--EEEEEecCCCcCchhhcccchHHHHH
Q 011856 355 TAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFAR 429 (476)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (476)
..+...+..+..+.+.+..+ .+..|+.++|.+. +++...-++...+ +.+.+..-+ ........+
T Consensus 758 ~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~~~~~~~--------~~~g~~~~d 826 (954)
T PRK05367 758 PISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECILDLRPLK--------ESTGITVDD 826 (954)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEEEeeccc--------ccCCCCHHH
Confidence 22333334343355555555 7888999988764 2221110000001 111221000 000112367
Q ss_pred HHHHHHHCCeEeccCC---CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 430 FYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 430 ~~~~l~~~Gv~~~~~~---~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.|.+.|+...... .+.+++ .-..+++|||+++++++.+..++
T Consensus 827 i~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~ 876 (954)
T PRK05367 827 IAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEI 876 (954)
T ss_pred HHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999865432 233444 46679999999999998887654
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=127.28 Aligned_cols=314 Identities=12% Similarity=0.047 Sum_probs=179.7
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------eEEEeCCHHHHHHHHHHHHHhcc-------C-CceEEEEeCCCCCCchhHHh
Q 011856 137 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e--------~v~~~~sGseA~~~al~~ar~~~-------~-~~~ii~~~~~yhg~~~~~~~ 200 (476)
..+.+.++.+++++.++-++ .-++++|||+||..|+.+||... + ++-++.....-|-+..-++.
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 35788899999999885222 36889999999999999998632 1 23345455556877777777
Q ss_pred hcCCCC---ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 201 KAGSGV---ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 201 ~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
..|.+. ..++...... .. -|+++|++.|++. +..+.+|+..--..+.|.+.| +++|.+
T Consensus 200 ~lGlg~~~v~~Vp~d~~~~---------~~---md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~ 263 (490)
T PLN02880 200 IAGIHPENCRLLKTDSSTN---------YA---LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGK 263 (490)
T ss_pred HcCCCHHHEEEeecCCCcC---------Cc---CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHH
Confidence 666542 2211110000 00 1799999998642 223455555555566899999 999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH--HHHhhcCCCCccc-----
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMVAPAGPMYQ----- 343 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~--i~~~l~~~~~~~~----- 343 (476)
+|++||+++++|-+|.|+ .....+-....|+ ..|-++ +-|.+...+..|.++.++. +.+.+.....+..
T Consensus 264 i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~ 343 (490)
T PLN02880 264 IAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQ 343 (490)
T ss_pred HHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccc
Confidence 999999999999999775 3221111112343 467665 5699987788999977642 2333321110000
Q ss_pred ------cCCC---CCcHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 344 ------AGTL---SGNPLAMTAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 344 ------~~t~---~~~~~~~aaa~aal~~~~~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
...+ .+..........+|+.+..+.+.++++ ++.+++.+.|++.. ++....+....++.|.+...
T Consensus 344 ~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~---~~el~~~~~~~iv~Fr~~~~ 420 (490)
T PLN02880 344 ANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDS---RFEVVTPRIFSLVCFRLVPP 420 (490)
T ss_pred ccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEEEEeCC
Confidence 0000 011111222223455554456666666 77777777665431 11111122333445544321
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCe-EeccC---CCcceEE---eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGV-YFAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~~~~~~---~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
... .........++.+.|.+.|- ++... +...+|+ +...+++|++.+++.|.+..+++
T Consensus 421 ~~~-----~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 421 KNN-----EDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred CCC-----hhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 00001223456667776654 44432 2234565 35667899999999999887765
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=129.35 Aligned_cols=300 Identities=16% Similarity=0.148 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHhhCCCCC-eEEEeCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 139 LLENVLAEMVISAVPSIE-MVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e-~v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
+...++.+++++++ +.+ --++.++|+.|..+++..+|.+. +++++++...+-||+........|..+..++..
T Consensus 530 q~i~elq~~l~elt-Gmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d 608 (939)
T TIGR00461 530 ELIAQLEKWLCSIT-GFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCD 608 (939)
T ss_pred HHHHHHHHHHHHHH-CCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccC
Confidence 45678899999998 444 44567788888877777776642 234566677788988776666666544332221
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG- 291 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g- 291 (476)
..|. -|+++|++.++++++++++|++...++. |.+.++ +++|.++|+++|.++++|-++..
T Consensus 609 -~~G~-------------iDle~L~~~i~~~~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDgAq~~a 670 (939)
T TIGR00461 609 -QDGN-------------IDLVDLKNKAEQHGDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDGANMNA 670 (939)
T ss_pred -CCCC-------------cCHHHHHHHHhhcCCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEecChhh
Confidence 1121 1899999999876567888877555444 555332 89999999999999999999942
Q ss_pred c-cccccchhhccCCCCchhhhh--hhcC-----CCCcEEEEEecHHHHHhhcCCCCc--------------cccCCCCC
Q 011856 292 F-RLAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAGPM--------------YQAGTLSG 349 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~t~s--K~lg-----~G~~iG~~~~~~~i~~~l~~~~~~--------------~~~~t~~~ 349 (476)
. ..- ..-....|+++++ |.|+ ||--+|.+.+++++...+- .+.. ...+...+
T Consensus 671 l~~l~-----~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lP-g~~v~~t~d~~greq~Iga~s~~~~g 744 (939)
T TIGR00461 671 QVGLT-----SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLP-KHDVVSMITGIGGSKSIGSVSAAPYG 744 (939)
T ss_pred CCCCC-----CccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcC-CCcccccccCCCCccccccccccccC
Confidence 2 111 1112335887664 9887 4556899999987655442 1111 01111234
Q ss_pred cHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe--cCCCcCchhhcccch
Q 011856 350 NPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT--EGPVYNFEDAKKSET 424 (476)
Q Consensus 350 ~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~--~~~~~~~~~~~~~~~ 424 (476)
+.+.+..+...|..+..+. ..+..-.+..|+.++|.+. +++.. .+....+.-+|. ..+. .....
T Consensus 745 ~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~~l~--~~~~~~~~hEfv~~~~~~------~~~~g 813 (939)
T TIGR00461 745 SASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YPILF--VGTLKHVAHECILDLRPL------KAKTG 813 (939)
T ss_pred cHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---Ccccc--cCCCCceeEEEEEeccch------hhhcC
Confidence 4444455555666555443 3444556778888888762 22221 111111112221 1100 00001
Q ss_pred HHHHHHHHHHHHCCeEeccCCCc---ce--EEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 425 TKFARFYRGMLEEGVYFAPSQFE---AG--FTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 425 ~~~~~~~~~l~~~Gv~~~~~~~~---~~--~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....++.+.|++.|++.....++ .+ +++-..+++|||++++++.++-+++
T Consensus 814 ~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~ 868 (939)
T TIGR00461 814 IEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEI 868 (939)
T ss_pred CCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 22468999999999975433211 22 3355679999999999998776553
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-11 Score=122.01 Aligned_cols=314 Identities=10% Similarity=0.009 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------eEEEeCCHHHHHHHHHHHHHhcc-------C-CceEEEEeCCCCCCchhHHh
Q 011856 137 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e--------~v~~~~sGseA~~~al~~ar~~~-------~-~~~ii~~~~~yhg~~~~~~~ 200 (476)
..+++.++.+++++.++-++ .-+|++|||+||..|+..||... + ++-++.....-|-+..-++.
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence 35788889999999885232 36789999999999999998641 1 22344445555666666666
Q ss_pred hcCCC---CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 201 KAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 201 ~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
..|.+ +..++...... .. -|+++|++.|++. +..+.+|+..--..+.|.+.| |++|.+
T Consensus 248 ilGlg~~~vr~Vp~d~~~~---------~~---md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~ 311 (539)
T PLN02590 248 IGGIHEENIRLLKTDSSTN---------YG---MPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGN 311 (539)
T ss_pred HcCCCcccEEEEeCCCCCC---------Cc---CCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHH
Confidence 65543 21111110000 00 1899999999642 122344555555556899999 999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH--HHHhhcCCCCcc------
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMVAPAGPMY------ 342 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~--i~~~l~~~~~~~------ 342 (476)
+|++||++|++|-+|.|+ ........-..|+ ..|-++ .-|.+...+..|.++.+.. +.+.+.....+.
T Consensus 312 i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~ 391 (539)
T PLN02590 312 IAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK 391 (539)
T ss_pred HHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence 999999999999999887 3221111112343 246554 4599888888999877653 333332110000
Q ss_pred -----ccCCC---CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 343 -----QAGTL---SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 343 -----~~~t~---~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
....+ ..-.........+|+.+-. .+.+++.-++.+++.+.|++.. .+....+..-.++.|.+...
T Consensus 392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~---~fel~~~~~l~iVcFr~~~~ 468 (539)
T PLN02590 392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDP---SFEVVTTRYFSLVCFRLAPV 468 (539)
T ss_pred cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCceEEEEEEecCC
Confidence 00000 1112333334455555443 3445555566666666665431 11111111112222322211
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeE-eccC---CCcceEE---eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~~---~~~~~~~---~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.... ........++.+.+.+.|.. +.+. +...+|+ +...+++|++.+++.|.+...++
T Consensus 469 ~~~~-----~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 469 DGDE-----DQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred CCCH-----HHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0000 00122345677777777754 3332 2234455 46678999999999999887665
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-11 Score=108.82 Aligned_cols=310 Identities=11% Similarity=0.078 Sum_probs=187.4
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
+.+||.+|++.+-+.+.++. +...|. ...-.++..||+.++++|+-- ...++++|+++.
T Consensus 39 ~~lgh~sPe~~qIm~~v~eg-----------------ikyVFkT~n~~tf~isgsGh~g~E~al~N--~lePgd~vLv~~ 99 (385)
T KOG2862|consen 39 PSLGHMSPEFVQIMDEVLEG-----------------IKYVFKTANAQTFVISGSGHSGWEAALVN--LLEPGDNVLVVS 99 (385)
T ss_pred CccccCCHHHHHHHHHHHHH-----------------HHHHhccCCCceEEEecCCcchHHHHHHh--hcCCCCeEEEEE
Confidence 67888888877766554432 222222 234567788899999999974 344778888887
Q ss_pred CCCCCCchhH-HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 189 GCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 189 ~~yhg~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
.+-+|....- ....|..+...+.+....+ .++.+++.|.+| ...+|.+...-+.+|+..+.
T Consensus 100 ~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~--------------~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~-- 161 (385)
T KOG2862|consen 100 TGTWGQRAADCARRYGAEVDVVEADIGQAV--------------PLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDL-- 161 (385)
T ss_pred echHHHHHHHHHHhhCceeeEEecCcccCc--------------cHHHHHHHHHhc--CCceEEEEecCccccccchH--
Confidence 6665543222 2223444433222222222 589999999987 67788888887888887762
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCC--c--cc
Q 011856 268 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--M--YQ 343 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~--~--~~ 343 (476)
++.+.++|++|+++|++|-|-+ + .|..|..+.+|++.-...--|++++--.++-+..++..++.++.++. . +.
T Consensus 162 -~~~~g~lc~k~~~lllVD~VaS-l-ggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yF 238 (385)
T KOG2862|consen 162 -LAISGELCHKHEALLLVDTVAS-L-GGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYF 238 (385)
T ss_pred -HHHHHHHhhcCCeEEEEechhh-c-CCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEE
Confidence 5667789999999999998875 1 23456677777744333456999842123447778888888875322 0 00
Q ss_pred ----cC------------CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 344 ----AG------------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 344 ----~~------------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
.. .+..+.....+..++|+.+.+ ++..++-++++++++..|++++-+.-...+-......-
T Consensus 239 d~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvt 318 (385)
T KOG2862|consen 239 DILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVT 318 (385)
T ss_pred eHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcce
Confidence 00 112233344555567776654 56667778888888888888643221111000000111
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe-EeccC----CCcceEE---eCCCcHHHHHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV-YFAPS----QFEAGFT---SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~----~~~~~~~---~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
. ...|...+..+++..+..++. .+..+ ....+|+ ....+.|.++..++.|+.++.+
T Consensus 319 t-------------v~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 319 T-------------VKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred e-------------eecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 1 122333344678888888844 44332 2234566 3455889999999999988865
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-11 Score=116.87 Aligned_cols=346 Identities=15% Similarity=0.053 Sum_probs=176.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
...|||+.+-.++ ..+.++....+..|.-.+.-++...+|.+.+++++ +.+.+++++||+.|+..+.. .
T Consensus 44 ~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~l-G~e~aV~v~sGTaAl~ll~~---l 112 (460)
T PRK13237 44 EDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYY-GFKHVVPTHQGRGAENLLSR---I 112 (460)
T ss_pred CcEEEECcccCCc-------hhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHH-CCCeEEEeCCHHHHHHHHHH---h
Confidence 4468999887544 34444433333333222222333345666666666 78899999999999998654 2
Q ss_pred ccCCceEEEEeCCCCCCchhH-HhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcC-CCCeEEEEE-c
Q 011856 178 FTGRERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENN-KGEIAAIIL-E 253 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~-~~~~a~vi~-e 253 (476)
..++++++ .+.+|-.+... +...|............. +. ....+..| |+++|++.|++. .++++.+.+ .
T Consensus 113 ~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~-~~----~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~i 185 (460)
T PRK13237 113 AIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHD-AQ----SDHPFKGNVDLDKLQALIDEVGAENIAYICLAV 185 (460)
T ss_pred CCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccc-cc----cCCCCCCCcCHHHHHHHhccccCCccCceEEEE
Confidence 34444444 33334333322 444443111100000000 00 00011122 899999999853 234444443 3
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cC---c---cccccchhh------ccCCCCchhhh--hhhcCC
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TG---F---RLAYGGAQE------YFGVTPDLTTL--GKIIGG 318 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g---~---r~g~~~~~~------~~g~~pDi~t~--sK~lg~ 318 (476)
+++..||...+.. .+++|+++|++||+.||.|-++ .| | |........ ...-.-|++|| .|.++.
T Consensus 186 tvn~~GGqpvs~~-~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~ 264 (460)
T PRK13237 186 TVNLAGGQPVSMA-NMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLV 264 (460)
T ss_pred ecccCCCeeCCHH-hHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCC
Confidence 4444456555444 4999999999999999999998 34 3 111110000 01112466654 476664
Q ss_pred CCcE-EEEEe-cHHHHHhhcCCCCcc-ccCCCCCcHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 319 GLPV-GAYGG-RRDIMEMVAPAGPMY-QAGTLSGNPL-AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 319 G~~i-G~~~~-~~~i~~~l~~~~~~~-~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
++ |+++. ++++.+.++.....+ .+.|+++-.- -+.|....|+...++++.++.-+..++|.+.|.+. +++
T Consensus 265 --~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~----Gvp 338 (460)
T PRK13237 265 --NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA----GVP 338 (460)
T ss_pred --CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC----CCc
Confidence 44 55544 567777776422222 3345554222 12222223443334567777777788888888764 444
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEec---c---CC-----------CcceEEe---C
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFA---P---SQ-----------FEAGFTS---L 453 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~---~---~~-----------~~~~~~~---~ 453 (476)
...+..|.-+.++... +.+...++.--...+...| ++-||-.. . +. ...+|+. -
T Consensus 339 v~~p~ggH~v~vda~~-----~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr 413 (460)
T PRK13237 339 IVEPVGGHAVFLDARR-----FLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRR 413 (460)
T ss_pred eecCCCceEEEEEhHH-----hCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccc
Confidence 4344455444444322 1111111111123343333 34454321 1 00 1123442 3
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 011856 454 AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~ 473 (476)
.-|.+++|...++|..+.+.
T Consensus 414 ~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 414 VYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 55899999999999987754
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-11 Score=122.11 Aligned_cols=231 Identities=18% Similarity=0.101 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHhhCCC--------------CCeEEEeCCHHHHHHHHHHHHHhccC----------------------
Q 011856 137 PCLLENVLAEMVISAVPS--------------IEMVRFVNSGTEACMGVLRLARAFTG---------------------- 180 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~--------------~e~v~~~~sGseA~~~al~~ar~~~~---------------------- 180 (476)
.++++.++.+++++.+.+ ...-.|++|||+||..|+..||...-
T Consensus 127 ~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~ 206 (522)
T TIGR03799 127 FTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYG 206 (522)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhcc
Confidence 357888888888887621 12357899999999999999986420
Q ss_pred -CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhc---CCCCeEEEE
Q 011856 181 -RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFEN---NKGEIAAII 251 (476)
Q Consensus 181 -~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~---~~~~~a~vi 251 (476)
++.+|+....-|-+...+....|.+.. ++..+|.+ |+++|++.+++ .+..+.+|+
T Consensus 207 ~~~~~v~~S~~~H~S~~kaa~~lglg~~----------------~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vv 270 (522)
T TIGR03799 207 YDGLAILVSERGHYSLGKAADVLGIGRD----------------NLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIV 270 (522)
T ss_pred CCceEEEECCCchHHHHHHHHHcCCCcc----------------cEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 123455555556655544444443210 11222211 79999998863 222233444
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEe
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGG 327 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~ 327 (476)
......+.|.+.| +++|.++|++||+++++|-+|.|. ..........-|+ ..|.++++ |.+.+.+.+|+++.
T Consensus 271 ataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llv 346 (522)
T TIGR03799 271 GVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLF 346 (522)
T ss_pred EEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEE
Confidence 4444556899999 999999999999999999999765 2111111112344 56888765 87776677898877
Q ss_pred c-HHHHHhhcCCCCcc------c--cCCCCCcHHH-HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 328 R-RDIMEMVAPAGPMY------Q--AGTLSGNPLA-MTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 328 ~-~~i~~~l~~~~~~~------~--~~t~~~~~~~-~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+ +++.+.+.....+. . ..++.++... .....++|+.+.. +.+.++..++.+++.+.|++.
T Consensus 347 r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 347 KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5 45655554311110 0 0011111111 1234456666544 556666777777777777653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=121.36 Aligned_cols=307 Identities=12% Similarity=0.021 Sum_probs=178.4
Q ss_pred CcHHHHHHHHHHHHhc--CCCC------CCC---HHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKG--TSFG------APC---LLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~~~~------~~~---~~~~~la~~l~~~~~~--~e~v~~-~~sGseA~~~al~~ar~~~~~ 181 (476)
-+++|++|+...+.+. .+.+ ... +...+..+.+++++.. ..+++| .+||+.|+++++.. ....+
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~n--l~~~g 91 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMN--LLGGG 91 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHh--cCCCC
Confidence 4789999998887431 0011 112 5667788888888852 234554 58899999999884 23344
Q ss_pred ceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH-HHhcCCCCeEEEEEcccCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~ 259 (476)
+++.....+.+|+...-+.. .|.. .....+...+. .+..++++ .+++ ++++|.+..+-+.+
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-------------~~~~~~~~~~l~~---~~~~V~~th~eTst 154 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-------------TYIPPLDEWQLSD---DAAYVHYTSNETID 154 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-------------CCCCChhhccCCC---CCCEEEEccCCCcc
Confidence 66777777776755433322 2321 11111110111 12233333 4543 56778888877778
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhc
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
|.+.++ +++| ||+++|+|-+++ |- ...-.+.+ |++++| |++|. -.+|.+.+++++++.+.
T Consensus 155 Gv~~~~---i~~i------~g~l~vVDavss~g~---~~idv~~~----d~~~~ssqK~lgP-~Glg~l~~s~~~l~~~~ 217 (360)
T PRK05355 155 GTEFHE---LPDT------GDVPLVADMSSDILS---RPIDVSKF----GLIYAGAQKNIGP-AGLTIVIVREDLLGRAL 217 (360)
T ss_pred eEecCc---cccc------CCCcEEEEcCccccC---ccCCHHHc----cEEEEeccccccC-CceEEEEECHHHHhhcc
Confidence 888731 5544 899999999995 11 11111222 455544 99862 22899999999988776
Q ss_pred CC-CCc-------ccc-CCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeece
Q 011856 337 PA-GPM-------YQA-GTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISG 402 (476)
Q Consensus 337 ~~-~~~-------~~~-~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~ 402 (476)
+. ..+ ... ..++.|.....+..++|+.+.+. ...++.+++.+++++.|+++.. +...... ...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-~~~~~~~~~rs~~ 296 (360)
T PRK05355 218 PSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF-YRNPVAPEDRSRM 296 (360)
T ss_pred cCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC-cccCCChhhcCCc
Confidence 41 100 001 12345566667777888887654 4455666666666666666431 0000000 01123
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+.+.+. +.....++...+.++|+.+..+. ...+|++ ..+|.+|||.+++.|++++.
T Consensus 297 v~sf~~~-------------~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 297 NVPFTLA-------------DEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred EEEEEcC-------------ChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3444432 22223566678889999985543 2457876 45579999999999999765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-11 Score=127.54 Aligned_cols=300 Identities=12% Similarity=0.130 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeC-CHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~~~-sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
+...+|.+++++++ +.+.+-+-+ ||+.+..+++...|.| ++|+ +++...+-|+.....+...|..+..++.
T Consensus 543 q~i~elq~~l~eLt-Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~-~vLIp~saHgtNpasa~~~GieVv~Vp~ 620 (954)
T PRK12566 543 AMIDELEAWLCAIT-GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRD-ICLIPSSAHGTNPASAQMAGMRVVIVEC 620 (954)
T ss_pred HHHHHHHHHHHHHH-CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCC-EEEecccccccCHHHHHHCCCEEEEecc
Confidence 34457888888888 777766655 8898888888776664 3344 4555557777665555545554433222
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT- 290 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~- 290 (476)
. ..|. -|+++|++.++++.+++++|.+..++..++...+ +++|.++|+++|+++++|-++.
T Consensus 621 D-~~G~-------------iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~~ 682 (954)
T PRK12566 621 D-PDGN-------------VDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANLN 682 (954)
T ss_pred C-CCCC-------------cCHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeChh
Confidence 1 1121 1899999999866668888777665554544444 9999999999999999999884
Q ss_pred CccccccchhhccCCCCchhhhh--hhcC----CC-CcEEEEEecHHHHHhhcCCC------C-cccc---CCCCCcHHH
Q 011856 291 GFRLAYGGAQEYFGVTPDLTTLG--KIIG----GG-LPVGAYGGRRDIMEMVAPAG------P-MYQA---GTLSGNPLA 353 (476)
Q Consensus 291 g~r~g~~~~~~~~g~~pDi~t~s--K~lg----~G-~~iG~~~~~~~i~~~l~~~~------~-~~~~---~t~~~~~~~ 353 (476)
+. ...-... .+..|+++++ |.|+ +| .-+|.+.+++++...+.... + .... ....++.+.
T Consensus 683 a~--~~l~~Pg--~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~ 758 (954)
T PRK12566 683 AQ--VGLARPA--DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASI 758 (954)
T ss_pred hc--cCCCChh--hcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHH
Confidence 22 1010011 2335887655 9875 23 44777777776665554210 0 1111 112233333
Q ss_pred HHHHHHHHHHhcCCCHHHHHH----HHHHHHHHHHHHHhhhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLN----KITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
..++...+..+..+ +.+.. .+..|+.++|.+. ++.... ...+. +--+.+...+... .......
T Consensus 759 l~~A~~Yi~~lG~e--Lk~aa~~ailnAnYla~rL~~~---~~v~~~-~~~~~~~hEfii~~~~l~~------~~g~~~~ 826 (954)
T PRK12566 759 LPISWMYIAMMGPQ--LADASEVAILSANYLANQLGGA---FPVLYR-GRNERVAHECILDLRPLKA------QTGISEE 826 (954)
T ss_pred HHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHhHhh---CCCCcC-CCCCCeeeEEEEEcccccc------ccCCCHH
Confidence 44444444444333 33333 4777888888762 333221 11111 1111111110000 0001125
Q ss_pred HHHHHHHHCCeEeccCC---CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 429 RFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 429 ~~~~~l~~~Gv~~~~~~---~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+.|++.||...... .+.+++ .-..+++|||+++++|+.+.+++
T Consensus 827 dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 827 DVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred HHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 68888889898754321 234555 45679999999999999887764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-11 Score=106.64 Aligned_cols=299 Identities=17% Similarity=0.199 Sum_probs=182.2
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCC
Q 011856 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 222 (476)
Q Consensus 143 ~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 222 (476)
.+-+.|++++ +.|.+.+|++.-||-.+++. ++.++++.++.|+..|=.+..+....|..+...+ ..+.|
T Consensus 65 ~F~~dlaeFl-g~D~~R~t~GARe~KfavMh---al~~~gd~vV~D~~aHYttyvAAEragl~v~eVp---~tg~P---- 133 (382)
T COG1103 65 DFLEDLAEFL-GMDEVRVTAGAREAKFAVMH---ALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVP---NTGYP---- 133 (382)
T ss_pred HHHHHHHHHh-CCceeeecccchhhHHHHHH---HhccCCCEEEEcCcchHHHHHHHHhcCCeEEecC---CCCCC----
Confidence 3444444444 89999999999999999998 7788999999999998888777777777665432 22222
Q ss_pred Cceeecc-CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhh
Q 011856 223 YETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 301 (476)
Q Consensus 223 ~~~~~~~-~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~ 301 (476)
.+.+. -+-.+.+|+..++.++.+++.++..+-++-|.+.. -+++.++|++||++++..-+|+ .|.+ ...
T Consensus 134 --ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt---~Grm-pvs 203 (382)
T COG1103 134 --EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT---VGRM-PVS 203 (382)
T ss_pred --ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee---eccc-ccc
Confidence 12221 11133445555555566888888888888888877 8899999999999999999996 2221 122
Q ss_pred ccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcC-CCC-------ccccCCCCCcHHHHHHHHHHHHHhc-C-CCH
Q 011856 302 YFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP-AGP-------MYQAGTLSGNPLAMTAGIHTLKRLK-E-PGT 369 (476)
Q Consensus 302 ~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~-~~~-------~~~~~t~~~~~~~~aaa~aal~~~~-~-~~~ 369 (476)
.-.+.+|.++-| |++++.-|+|.+..+++..+.+-. .++ -..+-|..+-|+... +|.+-... + ..|
T Consensus 204 ~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTl--mASfP~V~eRVkrW 281 (382)
T COG1103 204 GKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTL--MASFPHVVERVKRW 281 (382)
T ss_pred ccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHH--HhcCHHHHHHHHHH
Confidence 334567877654 899866699999999998776532 212 012333334443322 22222111 1 233
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE-eccCCC
Q 011856 370 YEYLNKITGELTQGIIDAG--KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPSQF 446 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~--~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~~~~ 446 (476)
-+.+ +..+++.+.|+++. .+.+.. +...-++-++- +. |...........--+++.|.++||. +.|+..
T Consensus 282 deEv-~kaR~fv~elEkigg~~qlG~r---Pk~HdLm~Fet--p~---f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~T 352 (382)
T COG1103 282 DEEV-EKARWFVAELEKIGGVKQLGER---PKNHDLMKFET--PV---FHEIAKKHKRKGYFLYEELKKRGIHGIQPGQT 352 (382)
T ss_pred HHHH-HHHHHHHHHHHHhhhHHHhCCC---CcccceeeecC--ch---HHHHHHhCcCCceeeHHHHHhcCccccccCce
Confidence 3333 45667777787764 122211 11111112221 10 0000000000112357888999986 556555
Q ss_pred cceEEe-CCCcHHHHHHHHHHHHHHHHH
Q 011856 447 EAGFTS-LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 447 ~~~~~~-~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..+-++ +..+.|+++..++++++++++
T Consensus 353 k~~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 353 KYFKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred eEEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 555554 788999999999999999875
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-11 Score=115.83 Aligned_cols=310 Identities=13% Similarity=0.028 Sum_probs=177.1
Q ss_pred CcHHHHHHHHHHHHhcC--CCCC------CC---HHHHHHHHHHHhhCCC--CCeEEEeC-CHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKGT--SFGA------PC---LLENVLAEMVISAVPS--IEMVRFVN-SGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~--~~~~------~~---~~~~~la~~l~~~~~~--~e~v~~~~-sGseA~~~al~~ar~~~~~ 181 (476)
.+..|++++.+.+.+.. +.+. .. +...++.+.+.+++.. ..+|+|++ |||+|+++++... ..+.
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl--~~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL--LAEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc--CCCC
Confidence 35688888888887421 1111 12 5566777888888752 34677765 5999999999842 2245
Q ss_pred ceEEEEeCCCCCCchhHHhhc-CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
+++++...+.+|....-+... |. +.....+. ..++.+..++++.... +++++|.+..+-+.+|
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~v~~th~ETstG 144 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGK-------------EGNYTKIPDPSTWEIS--EDAAYVHYCANETIHG 144 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccc-------------cCCCCCCCCHHhcCCC--CCCCEEEEcCCCCccc
Confidence 677777777777554333222 33 22111110 0112222233322222 2577777777777788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHHHHhhcCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPA 338 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~~~ 338 (476)
...+ ++++.+++++++|-+++ + .+...-.+.+ |++++ -|++|. -.+|.+..++++++.+.+.
T Consensus 145 v~~~---------~l~~~~~~l~iVDavss-~-g~~~id~~~~----d~~~~ssqK~lgP-~Glg~l~~s~~~~~~~~~~ 208 (349)
T TIGR01364 145 VEFR---------ELPDVKNAPLVADMSSN-I-LSRPIDVSKF----GLIYAGAQKNIGP-AGLTVVIVRKDLLGRASRI 208 (349)
T ss_pred Eecc---------eecccCCCeEEEEcccc-c-cCccCCHHHc----cEEEEecccccCC-CceEEEEECHHHHhhcccC
Confidence 7654 66777899999999995 1 0011111222 35544 499962 2289999999998876542
Q ss_pred CC-cc-------ccCCC-CCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee-ceeE
Q 011856 339 GP-MY-------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMF 404 (476)
Q Consensus 339 ~~-~~-------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~ 404 (476)
.+ +. ...++ +.|.....+..++|+.+.+. ...++.+++.+++++.|+++..-.....+.... ...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~ 288 (349)
T TIGR01364 209 TPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNV 288 (349)
T ss_pred CCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEE
Confidence 11 00 01222 44566666777888887643 345555666666666666652100010000011 2334
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+.+.+ .....++...+.++|+.+.++. ...+|++ ..+|+||||.++++|+++.+
T Consensus 289 sf~~~~-------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 289 VFTLGN-------------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred EEecCC-------------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 444321 1122566678889999665553 2467776 45589999999999998765
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-11 Score=114.26 Aligned_cols=275 Identities=16% Similarity=0.132 Sum_probs=163.0
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
+-+.|||-|+..+......+.++..|.+.++++-. +.......|..+..+++-+...- . -|.+.+-+
T Consensus 98 ~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~N-H~~If~~aGl~v~~Y~Yyd~~~~---------~---~df~~mla 164 (396)
T COG1448 98 VQTLGGTGALRVAADFLARFFPDATVWISDPTWPN-HKAIFEAAGLEVETYPYYDAETK---------G---LDFDGMLA 164 (396)
T ss_pred eecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHh-HHHHHHhcCCceeeeeccccccc---------c---ccHHHHHH
Confidence 45789999999999977677778888888888754 44555555665544332211110 0 17788877
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhcc------CCCCchh--
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------GVTPDLT-- 310 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~------g~~pDi~-- 310 (476)
.|++.+.....++-.+-+|++|.- ++.+.|++|.++.++.+.+-++|=+|-||..| ...+.+ ...+.++
T Consensus 165 ~L~~a~~~~vvLLH~CcHNPTG~D-~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G--leeDa~~lR~~a~~~~~~lva 241 (396)
T COG1448 165 DLKTAPEGSVVLLHGCCHNPTGID-PTEEQWQELADLIKERGLIPFFDIAYQGFADG--LEEDAYALRLFAEVGPELLVA 241 (396)
T ss_pred HHHhCCCCCEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCCeeeeehhhhhhccc--hHHHHHHHHHHHHhCCcEEEE
Confidence 787665555555556666667754 55566999999999999999999999999333 111222 1223333
Q ss_pred -hhhhhcC-CCCcEEEE--Ee-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHH-HHH--Hh-----cC-CCHHHHHHHH
Q 011856 311 -TLGKIIG-GGLPVGAY--GG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH-TLK--RL-----KE-PGTYEYLNKI 376 (476)
Q Consensus 311 -t~sK~lg-~G~~iG~~--~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~a-al~--~~-----~~-~~~~~~~~~~ 376 (476)
+|||.|| =|-|+|++ ++ +.+..+.+...-+...-++|+.+|--=+...+ .|+ .+ .+ +++++++.++
T Consensus 242 ~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~m 321 (396)
T COG1448 242 SSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEM 321 (396)
T ss_pred ehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999 58899988 22 33444433311112234456544432222222 221 01 11 4556677777
Q ss_pred HHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe-CCC
Q 011856 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS-LAH 455 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~-~~~ 455 (476)
+..|.+.|++......+..-....|+|...-+. .+++.+.--+.||++..++ |++ ...
T Consensus 322 R~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls-----------------~~QV~rLree~~IY~v~sG----Ri~vaGl 380 (396)
T COG1448 322 RQALVDALKALGAPRNFDFIISQRGMFSYTGLS-----------------PEQVDRLREEFGIYLVASG----RINVAGL 380 (396)
T ss_pred HHHHHHHHHhhCCCcccchHhhcCceeecCCCC-----------------HHHHHHHHHhccEEEecCC----eeeeccC
Confidence 777777777654332222222334433211111 1334334446799988775 664 466
Q ss_pred cHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKV 470 (476)
Q Consensus 456 t~e~i~~~~~~l~~~ 470 (476)
++..++.+.++|.++
T Consensus 381 ~~~ni~~va~ai~~v 395 (396)
T COG1448 381 NTSNIDYVAKAIAAV 395 (396)
T ss_pred ChhhHHHHHHHHHhh
Confidence 889999999888765
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-10 Score=122.51 Aligned_cols=344 Identities=14% Similarity=0.094 Sum_probs=189.1
Q ss_pred CEEEecccChhhccCCCCcH-HHHHHHHHHHHhc--CCCC-C-----CCHHHHHHHHHHHhhCC-CC-C-eEEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADD-QVLAALGETMKKG--TSFG-A-----PCLLENVLAEMVISAVP-SI-E-MVRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p-~v~~a~~~~l~~~--~~~~-~-----~~~~~~~la~~l~~~~~-~~-e-~v~~~~sGse 166 (476)
..|+|..+. +..+| .|.+++.+.+... ...+ + ..+..++..+.+++++. .. + .|+||+|+|+
T Consensus 35 ~iYLD~Aat------t~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGA------TLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCC------CCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence 578887655 12234 4555554544431 1111 1 13455677788888886 33 3 5899999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh--
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE-- 241 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-- 241 (476)
|+..+.... .+.+++.||+. ..-|......... .|..+...+.+...+.+..... .+.. +.++|++.++
T Consensus 109 alnlva~~l-~~~~gd~Iv~t-~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g-~~~~---~~~~l~~~~~~~ 182 (805)
T PLN02724 109 ALKLVGETF-PWSSESHFCYT-LENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQG-SVVV---KSRGLQRRNTSK 182 (805)
T ss_pred HHHHHHHHC-CCCCCCeEEEe-eccccchHHHHHHHHHcCCeEEeccchhcccccccccc-cccc---chhhhhhhhhhh
Confidence 999887632 23455666664 4555544443322 1322222211100000000000 0000 1244555431
Q ss_pred --c---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--------CCEEEEeccccCccccccchhhccCCCCc
Q 011856 242 --N---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--------GALLIFDEVMTGFRLAYGGAQEYFGVTPD 308 (476)
Q Consensus 242 --~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--------g~llI~DEv~~g~r~g~~~~~~~~g~~pD 308 (476)
. ..+.+++|.+..+.+.+|.+.| ++.+..+++.. ++++++|-+|+ .|. ...+.-.+.+|
T Consensus 183 l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~---~g~-~piDv~~~~~D 254 (805)
T PLN02724 183 LQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG---CGT-SPPDLSRYPAD 254 (805)
T ss_pred hccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh---cCC-CCCChhhcCCC
Confidence 1 1235678888888888999999 77665555432 36899999994 111 11122234579
Q ss_pred hhhhh--hhcCCCCcEEEEEecHHHHHhhcCC---C-Cc--------cc---------cCCCCCcHHHHHHHHHHHHHhc
Q 011856 309 LTTLG--KIIGGGLPVGAYGGRRDIMEMVAPA---G-PM--------YQ---------AGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 309 i~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~---~-~~--------~~---------~~t~~~~~~~~aaa~aal~~~~ 365 (476)
++++| |.+|+-..+|++++++++.+.+.+. + .. ++ +-.-+.|.++.++..++|+.+.
T Consensus 255 fl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~ 334 (805)
T PLN02724 255 FVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLN 334 (805)
T ss_pred EEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHH
Confidence 88766 9877423489999999888776631 0 00 00 0011345666677777888776
Q ss_pred C---CCHHHHHHHHHHHHHHHHHHHhhhcC--CceE---------eeeeceeEEEEEecCCCcCchhhcccchHHHHHHH
Q 011856 366 E---PGTYEYLNKITGELTQGIIDAGKKAG--HAIC---------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (476)
Q Consensus 366 ~---~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~---------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (476)
+ +...++.+++.+++.+.|.++....+ .+.- ....+.++.|.+.+.....+ ....+.
T Consensus 335 ~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v---------~~~~v~ 405 (805)
T PLN02724 335 RLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWV---------GHREVE 405 (805)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEe---------CHHHHH
Confidence 5 56778888888888888887631111 1100 11245677777654221111 012233
Q ss_pred HHHHHCCeEeccCCC---------------------------------------cceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 432 RGMLEEGVYFAPSQF---------------------------------------EAGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 432 ~~l~~~Gv~~~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
..+-++||.++.+.. ..+|++ ...|.+|||++++.|++.
T Consensus 406 ~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 406 KLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred HHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 333455776644311 235665 567999999999999987
Q ss_pred H
Q 011856 471 K 471 (476)
Q Consensus 471 ~ 471 (476)
+
T Consensus 486 ~ 486 (805)
T PLN02724 486 F 486 (805)
T ss_pred h
Confidence 5
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-11 Score=120.25 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~ 213 (476)
..+...++++.++++. +.+..++++||+.|+.+++... ...+++||+....|.+..... +...|.
T Consensus 67 ~~pt~~~le~~la~l~-g~~~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi--------- 134 (437)
T PRK05613 67 TNPTVEALENRIASLE-GGVHAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVTLNRLGI--------- 134 (437)
T ss_pred cChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHHHHhcCe---------
Confidence 4566778888888887 4578888888999999888732 345677887766676642211 111121
Q ss_pred CCCCCCCCCCceeecc-CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 214 SPGVPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
++..++ .+|++++++.++. ++++|++|...++.|.+.+ +++|.++|+++|+++|+|.++..
T Consensus 135 ----------~v~~vd~~~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~- 196 (437)
T PRK05613 135 ----------EVTFVENPDDPESWQAAVQP---NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT- 196 (437)
T ss_pred ----------EEEEECCCCCHHHHHHhCCc---cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc-
Confidence 233332 3478999998874 5778888887777788888 99999999999999999999942
Q ss_pred cccccchhhccCCCCchh--hhhhhcCC-CCcEEEEEe
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~ 327 (476)
+.......+| .|++ ++.|.++| |--+|+++.
T Consensus 197 --g~~~~p~~~G--aDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 197 --AALVRPLELG--ADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred --ccccChHHhC--CCEEEeeccceecCCCcceeEEEE
Confidence 1111111234 4776 46699886 544555533
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-11 Score=116.82 Aligned_cols=235 Identities=19% Similarity=0.167 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
++....|.+.++++- +.+..+.++||..|+..++.. ....+++|+..+..|.+....+...... .++
T Consensus 62 nPT~~~lE~~~a~LE-g~~~~~afsSGmaAI~~~~l~--ll~~GD~vl~~~~~YG~t~~~~~~~l~~----------~gi 128 (396)
T COG0626 62 NPTRDALEEALAELE-GGEDAFAFSSGMAAISTALLA--LLKAGDHVLLPDDLYGGTYRLFEKILQK----------FGV 128 (396)
T ss_pred CccHHHHHHHHHHhh-CCCcEEEecCcHHHHHHHHHH--hcCCCCEEEecCCccchHHHHHHHHHHh----------cCe
Confidence 555677888887776 678899999999999998773 2344788888888887754433322111 111
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (476)
++..++..+.+.+++.+.+ +++++|++|++-|+...+.. +++|.++|+++|+++|+|.++.. .
T Consensus 129 ------~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat-----P 191 (396)
T COG0626 129 ------EVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT-----P 191 (396)
T ss_pred ------EEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc-----c
Confidence 3444444456666666653 37999999999888888888 99999999999999999999952 1
Q ss_pred chhhccCCCCchh--hhhhhcCCC--CcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 298 GAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 298 ~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
..+..+..-.||+ +.+|.++|. .-.|.++++. ++.+.+... .....++ ..+|.-+-..+..|+-+ .-..++
T Consensus 192 ~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-~~~~~G~-~l~p~dA~l~lRGlkTL--~~Rm~~ 267 (396)
T COG0626 192 VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-QRANTGA-VLSPFDAWLLLRGLRTL--ALRMER 267 (396)
T ss_pred cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH-HHhhcCC-CCCHHHHHHHHhccchH--HHHHHH
Confidence 1223333345777 688999974 4466566554 455544210 0001122 34555555444444322 334456
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEec
Q 011856 373 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 410 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~ 410 (476)
..++...+.+.|++ ++.+.. ..+.|.|+.|++.+
T Consensus 268 ~~~nA~~IA~~L~~----~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 268 HNENALKIAEFLAD----HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred HHHHHHHHHHHHhc----CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 66666666666665 222211 22588999999964
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-13 Score=127.61 Aligned_cols=194 Identities=23% Similarity=0.209 Sum_probs=119.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCC--
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-- 193 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg-- 193 (476)
.+|++.+++.+. ..+...+..++...+|.+++++.+ +.+.++|++||+.||..+++... .+.+.||.-+ ..|-
T Consensus 7 ~~~~m~~a~~~a-~~gd~~Yg~D~~~~~l~~~i~~l~-g~e~a~f~~sGT~An~~al~~~~--~~~~~vi~~~-~aHi~~ 81 (290)
T PF01212_consen 7 PTPAMLEAMAAA-NVGDDAYGEDPTTARLEERIAELF-GKEAALFVPSGTMANQLALRAHL--RPGESVICAD-TAHIHF 81 (290)
T ss_dssp S-HHEEHHHHHT-TSB-CCTTSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHHHH--HTTEEEEEET-TEHHHH
T ss_pred CCHHHHHHHHcc-ccCCcccCCChhHHHHHHHHHHHc-CCCEEEEeCCCChHHHHHHHHHH--hcCCceeccc-cceeee
Confidence 689999999443 344333456788889999999988 77888999999999999999532 2344444443 3332
Q ss_pred CchhHH-hhcCCCCccCCCCCCC-CCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCC-CCcccCCHH
Q 011856 194 HADPFL-VKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGN-SGFIAPKPD 267 (476)
Q Consensus 194 ~~~~~~-~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~-~G~i~~~~~ 267 (476)
+...+. ..+|..+.. ++... |.. |+++|++.++. |..++++|.+|...+. ||.+.+ .+
T Consensus 82 ~E~ga~~~~~G~~~~~--l~~~~~G~l-------------~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s-~~ 145 (290)
T PF01212_consen 82 DETGAIEELSGAKLIP--LPSDDDGKL-------------TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYS-LE 145 (290)
T ss_dssp SSTTHHHHHTTCEEEE--EBECTGTBB--------------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB----HH
T ss_pred eccchhhHhcCcEEEE--CCCcccCCC-------------CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCC-HH
Confidence 222333 334443332 12222 211 79999999986 4457888888877665 565554 55
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc---cccccchhhccCCCCchh--hhhhhcCCCCcEEEE-EecHHHHHh
Q 011856 268 FLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 334 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~-~~~~~i~~~ 334 (476)
.|++|.++|++||+.|++|-+...- ..+. ...+.. -..|++ +++|.++ .+.|++ ++++++++.
T Consensus 146 el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~-~~~e~~-~~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 146 ELRAISELAREHGLPLHMDGARLANAAAALGV-SLAEIA-AGADSVSFGGTKNGG--APGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH-HHHHHH-TTSSEEEEETTSTT---SSSEEEEEESHHHHHH
T ss_pred HHHHHHHHHHhCceEEEEehhhHHHhhhcccc-cHHHHh-hhCCEEEEEEEcccc--cccceEEEechHHHHH
Confidence 5999999999999999999665210 0010 111222 235766 4667654 467766 778886554
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=118.92 Aligned_cols=305 Identities=12% Similarity=-0.023 Sum_probs=169.7
Q ss_pred cHHHHHHHHHHHHhcC---CCC-CCCHHHHHHHHHHHhhCCC--CCeEEEe-CCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 117 DDQVLAALGETMKKGT---SFG-APCLLENVLAEMVISAVPS--IEMVRFV-NSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~---~~~-~~~~~~~~la~~l~~~~~~--~e~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
+|+|.+|+..+..... +.+ ...+...+..+.+++++.. ..+|+|+ +|||.+++.++.. +..+ +.+....
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~---l~~~-~~l~i~~ 90 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFG---LIEK-KSLHLSF 90 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHh---cccc-cccEEec
Confidence 6888888764421111 111 1235556777778777752 3378885 7799999999983 3322 2333333
Q ss_pred CCCCCchhHHhhc---CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 190 CYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 190 ~yhg~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+.||....-.... ...+ ..+.++.+ +.++..+ .+++++|.+..+.+.+|.+.|
T Consensus 91 G~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~--~~~~~~~---~~~~~lV~~~h~et~tG~~~p-- 146 (361)
T TIGR01366 91 GEFSSKFAKAVKLAPWLGEP-----------------IIVTADPG--SAPEPQA---DPGVDVIAWAHNETSTGVAVP-- 146 (361)
T ss_pred CHHHHHHHHHHHhhhccCCc-----------------eEEecCCC--CCCCCcc---CCCCCEEEEcccCCccceecc--
Confidence 4444322222211 0111 11222211 1122112 236888999998888999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCC---CC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPA---GP 340 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~---~~ 340 (476)
+++| ++++|+++|+|-+++ + |. ...++ ..|++++| |.+++---++.++.++++++.+.+. +.
T Consensus 147 --i~~I---~~~~g~~~iVDavqs-~--g~----~~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~ 214 (361)
T TIGR01366 147 --VRRP---EGSDDALVVIDATSG-A--GG----LPVDIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGR 214 (361)
T ss_pred --cccc---cccCCCeEEEEcCcc-c--cC----CCCCHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCC
Confidence 5555 689999999999995 1 11 11111 14777655 9988310155557799888776521 00
Q ss_pred ---cc-----------ccCCCCCcHHH-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEee-ee
Q 011856 341 ---MY-----------QAGTLSGNPLA-MTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YI 400 (476)
Q Consensus 341 ---~~-----------~~~t~~~~~~~-~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~ 400 (476)
.+ ..+|.+.+++. ..+..++++.+.+. ...++.+++.+++++.|.+...-......-. ..
T Consensus 215 ~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s 294 (361)
T TIGR01366 215 WVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRS 294 (361)
T ss_pred CCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcc
Confidence 01 02334443333 33566778877653 3345666677777777776642111110000 01
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.....+.|.+ .....++...|.++||.+.++. ...+|++ ..+|++|+++++++|+++++++
T Consensus 295 ~~v~~v~~~~-------------g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 295 QVVGTIDFVD-------------DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred cceEEEECCC-------------ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 1112222321 1123567788888999987652 2346774 5679999999999999988763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-11 Score=116.24 Aligned_cols=309 Identities=14% Similarity=0.047 Sum_probs=168.1
Q ss_pred CcHHHHHHHHHHHHhcCCCC-----CC------CHHHHHHHHHHHhhCC--CCCeEEEeCC-HHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-----AP------CLLENVLAEMVISAVP--SIEMVRFVNS-GTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-----~~------~~~~~~la~~l~~~~~--~~e~v~~~~s-GseA~~~al~~ar~~~~~ 181 (476)
-++.|++|+.+.+.+..+.+ .. .+...+..+.+++++. ..+.|+|++| ||++++.++.....-.++
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~ 89 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGT 89 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCe
Confidence 47899999999875421111 11 1556677888888886 3567888866 999999999842110113
Q ss_pred ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC-HHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
..+|+. +.|.-+........|..+.....+. .+ .+.+ .+..+..+. +++++|.+..+.+.+|
T Consensus 90 ~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~-~g------------~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG 152 (355)
T cd00611 90 ADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKE-EG------------KYTKIPDVETWDLA---PDAAYVHYCSNETIHG 152 (355)
T ss_pred EEEEEC-CHHHHHHHHHHHhcCCCcEEEeccc-cc------------CCCCCCCHhhcCCC---CCCCEEEEeCCccccc
Confidence 333332 2221111111122232222111110 00 0112 121222222 3677787777777778
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~ 339 (476)
.+.+ ++++.||+++++|-+++ |- ...-.+.+++ ++.+--|.+|. ..+|.+++++++.+.+.+..
T Consensus 153 ~~~~---------~i~~~~g~~~~VDa~qs~g~---~~idv~~~~~--~~ss~~K~lGP-~G~g~l~~~~~~~~~~~~~~ 217 (355)
T cd00611 153 VEFD---------EVPDTGGVPLVADMSSNILS---RPIDVSKFGV--IYAGAQKNLGP-AGVTVVIVRKDLLGKARKIT 217 (355)
T ss_pred EEcc---------eecccCCCeEEEEccccccC---CCCCHHHhCE--EEeecccccCC-CceEEEEECHHHHhhcccCC
Confidence 7633 45566999999999995 11 1111122221 23234588862 23899999999987765321
Q ss_pred C-cc-------ccC-CCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHH-hhhcCCceEeeee-ceeE
Q 011856 340 P-MY-------QAG-TLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDA-GKKAGHAICGGYI-SGMF 404 (476)
Q Consensus 340 ~-~~-------~~~-t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~v~~~-g~~~ 404 (476)
+ .. ... .++.|.....+..++|+.+.+. ...++.+++.+++++.|+++ +. +....+.... +..+
T Consensus 218 ~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl-~~~~~~~~~rs~~vv 296 (355)
T cd00611 218 PSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF-YRGPVDKRARSRMNV 296 (355)
T ss_pred CCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc-cccCCCHHHcCceEE
Confidence 1 11 011 1234555667777888887643 44566667777777777765 21 1011110111 2334
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEeCCC--cHHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLAH--SSDDIQHTITAAEKV 470 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~~~~--t~e~i~~~~~~l~~~ 470 (476)
.+.+.+. ....++...+.++|+.+.++. .+.+|+++.+ |++|||+++++|+++
T Consensus 297 sf~~~~~-------------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 297 PFRLGKE-------------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred EEEcCCh-------------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 4443220 111455567888999854442 2457886544 999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-10 Score=102.00 Aligned_cols=330 Identities=17% Similarity=0.116 Sum_probs=196.4
Q ss_pred EcCCCEEEecccChhhccCCCCcHHHHHHHHHHH-Hh-c-----CCC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCC
Q 011856 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM-KK-G-----TSF-G--APCLLENVLAEMVISAVP-SIEMVRFVNS 163 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l-~~-~-----~~~-~--~~~~~~~~la~~l~~~~~-~~e~v~~~~s 163 (476)
+.+|-.||| + |.||..++.+.+...+.. +. + ..+ + ..-.+-+.|..+|+-+.+ ...+|.+++|
T Consensus 28 lp~~viyLd---g---nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dt 101 (407)
T COG3844 28 LPGGVIYLD---G---NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDT 101 (407)
T ss_pred CCCCeEEee---c---cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCC
Confidence 455666766 4 678876655555444433 22 1 111 0 112334556666666665 4678888887
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
-+--+.-.+..+...+.++.||++++..+..-... ...-..+. .... ++.. -..++++++.++
T Consensus 102 ts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~-a~g~~~~~----~~~~--------~~~~--~~~P~~~~~~~~-- 164 (407)
T COG3844 102 TSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYI-AEGLADLL----GIGY--------DLEG--VIAPRALEEAIT-- 164 (407)
T ss_pred cchHHHHHHHHHhccCCCceEEeecCCCCCcchhh-hcchhhhh----cccc--------ccee--eeChHHHHHhhc--
Confidence 77766667766555666788888887654422111 10000000 0000 0000 014678888887
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccccccchhhc--cCCCCchhhhhhhcCCC-
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEY--FGVTPDLTTLGKIIGGG- 319 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~--~g~~pDi~t~sK~lg~G- 319 (476)
++++.|++..++.-+|.... +.+|-+++++||++++.|=+|+ |- ...+. .|..--|-|-=|.+++|
T Consensus 165 -dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHsaGa-----vp~~Lh~~gaDfaigcsyKYLNgGP 234 (407)
T COG3844 165 -DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHSAGA-----VPVDLHAAGADFAIGCSYKYLNGGP 234 (407)
T ss_pred -cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcccCC-----cceeecccCCCeeeeeeceeccCCC
Confidence 48999999999999999998 9999999999999999999995 22 11121 23322244566988865
Q ss_pred -CcEEEEEecHHHHHhhcC--------CCCccc------------cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 011856 320 -LPVGAYGGRRDIMEMVAP--------AGPMYQ------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNK 375 (476)
Q Consensus 320 -~~iG~~~~~~~i~~~l~~--------~~~~~~------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 375 (476)
-|.|.++.+ +..+...+ ..++.. +-.-..+.+++++...+|++..+ .+++++.-.
T Consensus 235 Gapa~l~v~~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSla 313 (407)
T COG3844 235 GAPAGLFVAP-RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLA 313 (407)
T ss_pred CCceeEEecc-ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhH
Confidence 444444443 33222211 011100 00112345677777788887665 556667777
Q ss_pred HHHHHHHHHHHHhhhcCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE
Q 011856 376 ITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 451 (476)
+.+++.+.++.....+++....+ ..|.-+.+... ...++.+.|.++||+..-.....+|+
T Consensus 314 LTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp----------------~~~~V~qaLi~rGVigD~R~P~vlRf 377 (407)
T COG3844 314 LTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP----------------HGYQVMQALIDRGVIGDFREPDVLRF 377 (407)
T ss_pred HHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC----------------cHHHHHHHHHHcCccccccCCCeeee
Confidence 77888777776654444322111 12333333321 23678899999999865554556666
Q ss_pred ---eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 ---SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ---~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++..+.+|+=.+++.|+++++..
T Consensus 378 gftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 378 GFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred cCccceechhHHHHHHHHHHHHHHhh
Confidence 68889999999999999998764
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=108.26 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|.++++.+-++ --.+.+.||..|+..|+.. ....+++|+....-|-|.+..+....
T Consensus 60 ~NPT~~vlE~RiAaLEGG-~aa~a~aSG~AA~~~ai~~--la~aGD~iVss~~LYGGT~~lf~~tl-------------- 122 (426)
T COG2873 60 MNPTTDVLEERIAALEGG-VAALAVASGQAAITYAILN--LAGAGDNIVSSSKLYGGTYNLFSHTL-------------- 122 (426)
T ss_pred cCchHHHHHHHHHHhhcc-hhhhhhccchHHHHHHHHH--hccCCCeeEeeccccCchHHHHHHHH--------------
Confidence 355567888888877643 3456788899999999984 23457788887777877554332211
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
+..+-++..+..+|++.+++.+++ ++++|++|.+-|+.+.+.. +++|.++|+++|++||+|...+.
T Consensus 123 --~~~Gi~v~fvd~~d~~~~~~aI~~---nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at----- 188 (426)
T COG2873 123 --KRLGIEVRFVDPDDPENFEAAIDE---NTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT----- 188 (426)
T ss_pred --HhcCcEEEEeCCCCHHHHHHHhCc---ccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCc-----
Confidence 111224667777789999999985 7999999999999999998 99999999999999999998852
Q ss_pred cchhhccCCCCchh--hhhhhcCC-CCcEEEEEecHHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRRDIME 333 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~~~i~~ 333 (476)
.+.+..+....||+ +++|.+|| |--+|.++...--.+
T Consensus 189 pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FD 228 (426)
T COG2873 189 PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFD 228 (426)
T ss_pred ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccc
Confidence 12233344456887 68999996 778888866544333
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=124.22 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCCCC
Q 011856 139 LLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPG 216 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~-v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~~ 216 (476)
..-.+..+..++.+ +.++ .+.+||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+. .-...|
T Consensus 205 G~I~eAq~~aA~~f-gA~~t~FlvNGST~gn~a~i~---a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~G 280 (755)
T PRK15029 205 GAFGESEKYAARVF-GADRSWSVVVGTSGSNRTIMQ---ACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYG 280 (755)
T ss_pred cHHHHHHHHHHHHh-CCCcEEEEeCChhHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccC
Confidence 33344444555556 5554 5557777778887777 4556666777888889999999999887554321 111122
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
++... ...+-+.+.+++.++++++.. ++|++.|.+ .|.+.. ++.|.++|+++|++|++||+
T Consensus 281 i~~~i-----~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 281 IIGPI-----YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred CccCC-----CccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEECc
Confidence 21100 000114899999998776544 677778876 577887 99999999999999999999
Q ss_pred ccCc-cccccchh-hcc-----C-CCCc-hhh--hhhhcCCCCc-EEEEEecHH--HH--HhhcCCCCccccCCCCCcHH
Q 011856 289 MTGF-RLAYGGAQ-EYF-----G-VTPD-LTT--LGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNPL 352 (476)
Q Consensus 289 ~~g~-r~g~~~~~-~~~-----g-~~pD-i~t--~sK~lg~G~~-iG~~~~~~~--i~--~~l~~~~~~~~~~t~~~~~~ 352 (476)
|.+. +....+.. ... . ..+| +++ .=|.+++ +. .+++..+.. .+ +.++. .+....|.|.+-+
T Consensus 350 hGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~--~l~~~qSTSPSY~ 426 (755)
T PRK15029 350 WYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLYA 426 (755)
T ss_pred cccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHH--HHHHHcCCCcHHH
Confidence 9544 44433321 111 1 3467 554 4487763 43 333433222 11 22221 1223345577888
Q ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011856 353 AMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 353 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
.++..-.+...++. .++.++..+....+++.++++.
T Consensus 427 LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 427 ICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 88877777776653 4567778888888888887653
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=114.89 Aligned_cols=230 Identities=17% Similarity=0.166 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+|.+.++++. +.+.++.++||+.|+.+++... ...+++||+....|.+.......... ..|
T Consensus 62 ~~P~~~~lE~~la~le-g~~~av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~~~----------~~G 128 (384)
T PRK06434 62 GNPTVQAFEEKYAVLE-NAEHALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKVLK----------TLG 128 (384)
T ss_pred CChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHHHH----------hcC
Confidence 3556677888888887 5678899999999999999842 44567788766666554332211100 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
+ ++..++.++.+.++ +. ++++++|++|.+.++.+.+.+ +++|.++|++++ +++|.++..
T Consensus 129 i------~v~fvd~~~~~~~~--l~--~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s----- 187 (384)
T PRK06434 129 I------HVDYIDTDRLNSLD--FD--PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS----- 187 (384)
T ss_pred c------EEEEECCCChhhee--ec--CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-----
Confidence 1 23333333333333 22 236889999998888888877 999999999998 456999831
Q ss_pred cchhhccCCCCchhh--hhhhcCC-C-CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 297 GGAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 297 ~~~~~~~g~~pDi~t--~sK~lg~-G-~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
.......+...|+++ ..|.++| | .-.|.++. ++++.+.++. .........+|+.++.++..|+.+ +..++
T Consensus 188 ~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~---~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~ 262 (384)
T PRK06434 188 PYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE---RRKTLGSNPDPIQAYLALRGLKTL--GLRME 262 (384)
T ss_pred cccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhCCCcH--HHHHH
Confidence 111122344567775 5599985 3 43565656 4556565541 110112244676666555555433 45666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCce------------EeeeeceeEEEEEe
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAI------------CGGYISGMFGFFFT 409 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~------------~v~~~g~~~~i~~~ 409 (476)
+..++...+.+.|++. |.+. ...+.|.|+.|++.
T Consensus 263 r~~~~a~~~a~~L~~~----p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 263 KHNKNGMELARFLRDS----KKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred HHHHHHHHHHHHHHcC----CCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 7777777777777653 3221 12367889999985
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-10 Score=111.75 Aligned_cols=251 Identities=21% Similarity=0.177 Sum_probs=157.4
Q ss_pred CcHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHHHhccC----C----
Q 011856 116 ADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTG----R---- 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~----~~~~~~~~~~~la~~l~~~~~~~e--~v~~~~sGseA~~~al~~ar~~~~----~---- 181 (476)
.++...+++...+.+.. .+....+.+.++..++.+.+...+ .-.||+||||||+.++.++|.... .
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 46777777777777632 122345778888899998885323 468999999999999999875431 0
Q ss_pred ---ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE-EEEEcccCC
Q 011856 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA-AIILEPVVG 257 (476)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a-~vi~ep~~~ 257 (476)
...|++....|-+..-++...|.+....+..... +. -|+++|++++.+. .+. +|+..-...
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~----------~~---id~~~l~~~i~~~--t~~g~vV~~aGtT 218 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTD----------YR---IDVDALEEAIDEN--TIGGVVVGTAGTT 218 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCc----------cc---cCHHHHHHHHHhh--ccCceEEEEecCC
Confidence 1146666678888888877777654432211100 01 1899999999864 222 255555556
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-c-cccchhhccCC-CCchhhh--hhhcCCCCcEEEEEecHH-
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-L-AYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRRD- 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~-g~~~~~~~~g~-~pDi~t~--sK~lg~G~~iG~~~~~~~- 330 (476)
+.|.+.| +++|.++|++||+++++|-++.|| - . ...+.+ .+++ ..|-+++ =|....-++.|+++.+++
T Consensus 219 ~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e 293 (460)
T COG0076 219 DTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEE 293 (460)
T ss_pred CCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCCCCceEEEEECHH
Confidence 6888988 999999999999999999999988 3 2 111110 1344 2355554 476656677999987655
Q ss_pred -HHHhhcCCCCcccc------CCCCCc--HHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 331 -IMEMVAPAGPMYQA------GTLSGN--PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 331 -i~~~l~~~~~~~~~------~t~~~~--~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+.+.+... ..+.. .|..++ .-..++..+.+..+.. .++.++..++.+++.+.|++.
T Consensus 294 ~l~~~~~~~-~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~ 361 (460)
T COG0076 294 ALRRILIFA-DYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL 361 (460)
T ss_pred Hhhhhhhcc-cccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44443311 11111 011111 2234455566666644 445555557788888877765
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.3e-09 Score=101.07 Aligned_cols=344 Identities=15% Similarity=0.043 Sum_probs=179.4
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
..|||+.+-.++ +...++..+||.. |.-.+.-++...+|.+.+++.+ +.+.++++.+|..+...++++ +
T Consensus 41 dV~IDLrSDTgT---~apS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~-G~E~alpthqGRgaE~Il~~~---~ 109 (467)
T TIGR02617 41 DVFIDLLTDSGT---GAVTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPV---L 109 (467)
T ss_pred CeEEECccCCCC---CCCCHHHHHHHHc----CCcccccCchHHHHHHHHHHHh-CCceEEECCCCchHHHHHHHh---h
Confidence 347899887432 3346777777764 4322233444567777777777 889999999999999999884 3
Q ss_pred cC--CceEE------EEeCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCC-C
Q 011856 179 TG--RERII------KFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-G 245 (476)
Q Consensus 179 ~~--~~~ii------~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~ 245 (476)
.+ ++.++ ++...+|-.+ -+....+|..+.....+.... .....++ -|+++|++.|++++ +
T Consensus 110 ~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~-------~~~~~~fkG~~dl~~le~~I~~~g~~ 182 (467)
T TIGR02617 110 IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFD-------TGVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_pred cccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcc-------cccCCCCCCCcCHHHHHHHHhhcCCC
Confidence 33 12222 1122333332 233444554322211110000 0001111 18999999998643 4
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc----Cc---cc-ccc-c-----hhhccCCCCchh-
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT----GF---RL-AYG-G-----AQEYFGVTPDLT- 310 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~----g~---r~-g~~-~-----~~~~~g~~pDi~- 310 (476)
++..+.+.-.+|..|..+.+.+.+++++++|++||+.++.|-+-. -| |. +.. . +.+.+. ..|.+
T Consensus 183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aDsvt 261 (467)
T TIGR02617 183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YADMLA 261 (467)
T ss_pred CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCCEEE
Confidence 566555555555434444456669999999999999999996551 11 00 100 0 001111 23544
Q ss_pred -hhhhhcCCCCcEEEE-EecHH----HHHhhcCCCC-ccccCCCCCcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 311 -TLGKIIGGGLPVGAY-GGRRD----IMEMVAPAGP-MYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 311 -t~sK~lg~G~~iG~~-~~~~~----i~~~l~~~~~-~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
|+||.++. |+|.+ +++++ +.+..+.... ...+.||++=.-- +.|....|+..-+++++.+--+..+||.+
T Consensus 262 ~slsKglgA--pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~ 339 (467)
T TIGR02617 262 MSAKKDAMV--PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVN 339 (467)
T ss_pred EEcCCCCCC--cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Confidence 68898865 77776 55544 3344332111 2234566642221 22222235444446677776777888888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEe---ccC---C----------
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYF---APS---Q---------- 445 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~---~~~---~---------- 445 (476)
+|.+. +++... ..|.-+.++-.. +.+...++.--+..++-.| ++-||-. ... .
T Consensus 340 ~L~~~----Gvpi~~-~Gghav~iDa~~-----~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~ 409 (467)
T TIGR02617 340 GLEEI----GVVCQQ-AGGHAAFVDAGK-----LLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPC 409 (467)
T ss_pred HHHhC----CCcEEe-cCccEEEEehhh-----hCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCC
Confidence 88774 444322 333333333211 1111111111123343333 3445431 111 0
Q ss_pred -CcceEEe---CCCcHHHHHHHHHHHHHHHHH
Q 011856 446 -FEAGFTS---LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 -~~~~~~~---~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|+. -.-|.+++|...+++..+.+.
T Consensus 410 ~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred ccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1123442 356899999999999987653
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=110.27 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (476)
+....+.+.+++.. +...++.++||..|...+++. .....++|+.++..|.|.. ..+..... ..|
T Consensus 77 Pt~~~le~~iaal~-ga~~~l~fsSGmaA~~~al~~--L~~~g~~iV~~~~~Y~gT~-~~l~~~~~---------~~g-- 141 (409)
T KOG0053|consen 77 PTRDVLESGIAALE-GAAHALLFSSGMAAITVALLH--LLPAGDHIVATGDVYGGTL-RILRKFLP---------KFG-- 141 (409)
T ss_pred CchHHHHHHHHHHh-CCceEEEecccHHHHHHHHHH--hcCCCCcEEEeCCCcccHH-HHHHHHHH---------HhC--
Confidence 33455566666555 667799999999999999985 3356788999999998843 33221111 011
Q ss_pred CCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccc
Q 011856 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298 (476)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~ 298 (476)
.....+..+|++.+++.+++ ++.+|++|.+-|+...+.. +++|+++|+++|+++|+|++..+. .
T Consensus 142 ----ie~~~vd~~~~~~~~~~i~~---~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p-----~ 205 (409)
T KOG0053|consen 142 ----GEGDFVDVDDLKKILKAIKE---NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP-----Y 205 (409)
T ss_pred ----ceeeeechhhHHHHHHhhcc---CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc-----c
Confidence 12333333456666666664 7999999999888888888 999999999999999999999643 1
Q ss_pred hhhccCCCCchh--hhhhhcCCC--CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH
Q 011856 299 AQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 362 (476)
Q Consensus 299 ~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~ 362 (476)
.++.+.+-.||+ +.+|.|+|. +-.|.++.+ +++...+.. ....--++.+|..+.-....++
T Consensus 206 ~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~---~~~~lg~~~~p~~~~ll~Rglk 271 (409)
T KOG0053|consen 206 NQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF---LQEDLGWCEDPFDLFLLSRGLK 271 (409)
T ss_pred ccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH---HHHHhcCCCCHHHHHHHhcCcc
Confidence 223333446888 578999974 556666775 777776652 1122234567776665544443
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-09 Score=105.16 Aligned_cols=269 Identities=17% Similarity=0.101 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCC------CHH
Q 011856 162 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFN------DVS 234 (476)
Q Consensus 162 ~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~ 234 (476)
-||+.||.+++.. ...++++|+..+..+-|+....... .+..+ ...++ .-+++.++.+ |.+
T Consensus 221 ~SGs~AN~aV~~A--Ll~PGD~IL~ldl~~GGHlshg~~~~~g~~v------s~sG~----~~~~vpY~~d~~~g~IDyd 288 (586)
T PLN02271 221 YSCTSANFAVYTG--LLLPGDRIMGLDSPSGGHMSHGYYTPGGKKV------SGASI----FFESLPYKVNPQTGYIDYD 288 (586)
T ss_pred ccHHHHHHHHHHH--hcCCCCEEEEecCCCCCchhccccccccccc------ccccc----eEEEEEcccccccCccCHH
Confidence 3899999999973 2445677777766544432211100 00000 00010 0112222222 789
Q ss_pred HHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh-
Q 011856 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT- 311 (476)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t- 311 (476)
++++..... ++++|++...... ...+ +++++++|+++|++|++|-+| .|+ -.+.. . ..+. ..|++|
T Consensus 289 ~lek~a~~~--rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~-sP~~-~aDvvt~ 357 (586)
T PLN02271 289 KLEEKALDF--RPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAKEC-V-NPFD-YCDIVTS 357 (586)
T ss_pred HHHHHhhhc--CCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccCcC-C-CCCc-CCcEEEe
Confidence 999865543 6788888664332 3455 899999999999999999999 566 32211 0 1111 358775
Q ss_pred -hhhhcCCCCcEEEEEecHH--------------------HHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHhcC---
Q 011856 312 -LGKIIGGGLPVGAYGGRRD--------------------IMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE--- 366 (476)
Q Consensus 312 -~sK~lg~G~~iG~~~~~~~--------------------i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~--- 366 (476)
.-|+|.| -+.|.+..+++ +.+.+... -+.+++++... ..++-..+++....
T Consensus 358 TTHKtLrG-PrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~---~IAalAvalkea~~~ef 433 (586)
T PLN02271 358 TTHKSLRG-PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNN---HIAALAIALKQVATPEY 433 (586)
T ss_pred CCcccCCC-CCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHH---HHHHHHHHHHHHhChHH
Confidence 5699974 23466666653 33333321 12333333221 23333344555544
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ- 445 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~- 445 (476)
.++.+++.++.+.|.+.|.+.+.+ +... .-...++.+++....+ ....+.+.|-+.||.+....
T Consensus 434 k~Ya~QVv~NAkaLA~~L~~~G~~--vv~g-gTdnHlvLvDl~~~g~------------~G~~ae~~Le~~~I~~Nkn~i 498 (586)
T PLN02271 434 KAYMQQVKKNAQALASALLRRKCR--LVTG-GTDNHLLLWDLTTLGL------------TGKNYEKVCEMCHITLNKTAI 498 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCe--EeeC-CCCcceeeecCcccCC------------CHHHHHHHHHHcCeEeccccC
Confidence 457777888888888888775322 1110 0123355555532100 11344455556688875431
Q ss_pred --------CcceEE------eCCCcHHHHHHHHHHHHHHHH
Q 011856 446 --------FEAGFT------SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 446 --------~~~~~~------~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...+|+ .....++|++++.+.|.++++
T Consensus 499 P~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 499 FGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 123555 245678888888888887765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-11 Score=120.47 Aligned_cols=231 Identities=15% Similarity=0.111 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDS 214 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~ 214 (476)
|.....+..+..++.+ +.++.+| +||.|.+|.+++. +..++++.|.++...|-+...++.+.|..+..+. ....
T Consensus 64 p~G~I~eAe~~aA~~f-GAd~t~flvnGsT~g~~a~i~---a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 64 PEGIIKEAEELAARAF-GADKTFFLVNGSTSGNQAMIM---ALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp TBTHHHHHHHHHHHHH-TESEEEEESSHHHHHHHHHHH---HHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred CccHHHHHHHHHHHhc-CCCeEEEEecCchHHHHHHHH---HhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 4444455555566666 6666655 5666777877777 4556777788888899998889988887543211 1111
Q ss_pred CCCCCCCCCceeeccC--CCHHHHHHHHhcCCCCeE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 215 PGVPKGATYETLTAPF--NDVSALENLFENNKGEIA---AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~--~d~~~le~~l~~~~~~~a---~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
.|+. ..++. -+.+.+++.++++++..+ +||+.|.+ .|.+.. +++|.++|++++++|++||+|
T Consensus 140 ~gi~-------~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAh 206 (417)
T PF01276_consen 140 YGII-------GGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAH 206 (417)
T ss_dssp TS-B-------EEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT
T ss_pred cCCc-------cCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccc
Confidence 1221 11111 135899999998876666 78888876 588888 999999999999999999999
Q ss_pred cCc-cccccchhhccCCCCc-------hhh--hhhhcCCCCcEEEEEecHHH---HHhhcCCCCccccCCCCCcHHHHHH
Q 011856 290 TGF-RLAYGGAQEYFGVTPD-------LTT--LGKIIGGGLPVGAYGGRRDI---MEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pD-------i~t--~sK~lg~G~~iG~~~~~~~i---~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
.+. +.. .+.........| +++ .=|.+++=-..+++..+.+. .+.++. .+....|.+.+-+.++.
T Consensus 207 Gah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~--~l~~~~TTSPSY~lmAS 283 (417)
T PF01276_consen 207 GAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNE--ALSMHQTTSPSYPLMAS 283 (417)
T ss_dssp -TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHH--HHHHHS-SS--HHHHHH
T ss_pred cccccCC-CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHH--HHHHHcCCChHHHHHHH
Confidence 544 433 222233445556 665 44888732245666554431 233331 12234455888888888
Q ss_pred HHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHH
Q 011856 357 GIHTLKRLK-E--PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 357 a~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~ 387 (476)
.-.+.+.++ . .++.++..++.+.+|+.|++.
T Consensus 284 lD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~ 317 (417)
T PF01276_consen 284 LDVARAQMEEEEGRELLEEAIELAEEFRKKINRL 317 (417)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 888877772 2 678888899999999999663
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=98.22 Aligned_cols=301 Identities=15% Similarity=0.138 Sum_probs=167.5
Q ss_pred cHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 117 DDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 117 ~p~v~~a~~~~l~~-~~~~~------~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
+..+++.....++. +.+.| +..-.+..+|+.+.++-+ ++++|++|.|.+.|+...+++..+ ..++.|++
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~-~~~~Gvli 166 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA-GKKTGVLI 166 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc-CCCCceEe
Confidence 44555555566655 21222 234567788888877643 578999999999999999997533 35677888
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---CCeEEEEEcccCCCCCccc
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIA 263 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~ 263 (476)
.-+-|.-++.. +.+.|.....+-+....++. -|.+.|++.+++.. +..++|+++|-|++ |.+.
T Consensus 167 PiPQYPLYsAt-i~l~~~~~v~YyLdEe~~W~------------ld~~el~~~~~eA~k~i~~r~lvvINPGNPT-Gqvl 232 (475)
T KOG0258|consen 167 PIPQYPLYSAT-ISLLGGTQVPYYLDEESNWS------------LDVAELERSVDEARKGINPRALVVINPGNPT-GQVL 232 (475)
T ss_pred ecCCCchhHHH-HHHhCCcccceeeccccCCC------------CCHHHHHHHHHHHhccCCceEEEEECCCCcc-chhh
Confidence 87777664433 33333322221111111110 17888888886532 24578888987664 5554
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccC-c-ccc-ccchhh----ccC-CCCch---h---hhhhhcC--CCCcEEEE-E
Q 011856 264 PKPDFLNAIRRITKENGALLIFDEVMTG-F-RLA-YGGAQE----YFG-VTPDL---T---TLGKIIG--GGLPVGAY-G 326 (476)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g-~-r~g-~~~~~~----~~g-~~pDi---~---t~sK~lg--~G~~iG~~-~ 326 (476)
+++-+++|..+|.+++++|+.||||-. + -.+ .+..+. +.| ..||- . +.||++. .|.|.|++ +
T Consensus 233 -s~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv 311 (475)
T KOG0258|consen 233 -SEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMES 311 (475)
T ss_pred -cHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeec
Confidence 445599999999999999999999943 3 333 222221 122 23432 2 5789887 48999998 4
Q ss_pred e--cHHHHHhhcCCCCccccCCCCCcHHHHHHH----------HHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 327 G--RRDIMEMVAPAGPMYQAGTLSGNPLAMTAG----------IHTLK--RLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 327 ~--~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa----------~aal~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
. .+++.+.+.+....... .+..+++.. ....+ .-+.+...+.++++.+.+.+.++.+ .
T Consensus 312 ~n~~prv~~qi~Kl~si~lc----~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~----~ 383 (475)
T KOG0258|consen 312 LNRDPRVKQQIKKLASIKLC----PQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL----E 383 (475)
T ss_pred ccCChhHHHHHHHHHhhhhc----CCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc----C
Confidence 3 34454444321110011 111111110 00111 1122566677777777777766654 3
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhc----ccchHHHHHHHHHHH-HCCeEeccCC
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAK----KSETTKFARFYRGML-EEGVYFAPSQ 445 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~-~~Gv~~~~~~ 445 (476)
.+.+-+..|.|+.+--..-+......+. .||. -.+..|+ .-||.+.|+.
T Consensus 384 gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~----FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 384 GISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDE----FYCLKLLEATGICVVPGS 437 (475)
T ss_pred ceeeccCccceeecccccCCHHHHHHHHHhCCCCcH----HHHHHHHHhcCeEEecCC
Confidence 4555566788876643221111111111 1221 1234555 4599999874
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=112.62 Aligned_cols=311 Identities=12% Similarity=0.040 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHhhCCCCCeE-EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH-HhhcCCCCccCC-CCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVATLG-LPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v-~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~-~~~~ 214 (476)
.....+-.+..++.+ +.++. +++||.|.+|.+++. +..++++.|+++...|-+.... +.++|..+..+. .-..
T Consensus 173 eG~i~eAq~~AA~~f-gAd~tyFlvNGTS~gn~a~i~---a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~ 248 (720)
T PRK13578 173 EGAAKDAQKHAAKVF-NADKTYFVLNGTSASNKVVTN---ALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNP 248 (720)
T ss_pred ChHHHHHHHHHHHHh-CCCceEEEeCChhHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccc
Confidence 333344444555556 55554 557777788888887 5567777888888999887764 788777543221 1111
Q ss_pred CCCCCCCCCceeeccCC--CHHHHHHHHhcCC-C-------CeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHhCCEE
Q 011856 215 PGVPKGATYETLTAPFN--DVSALENLFENNK-G-------EIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALL 283 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~--d~~~le~~l~~~~-~-------~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l-~~~~g~ll 283 (476)
.|+.. .++.. +.+.+++.|++++ + -.++||+.|.+ .|.+.. ++.|.++ |++++ .|
T Consensus 249 ~Gi~g-------~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~l 314 (720)
T PRK13578 249 FGFIG-------GIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YI 314 (720)
T ss_pred cCCcC-------CCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cE
Confidence 22211 11111 3577999998762 2 24567777766 588888 8999998 78888 99
Q ss_pred EEeccccCc-ccccc---chhhccCCCCc----hhh--hhhhcCCCCc-EEEEEecHHHH---------HhhcCCCCccc
Q 011856 284 IFDEVMTGF-RLAYG---GAQEYFGVTPD----LTT--LGKIIGGGLP-VGAYGGRRDIM---------EMVAPAGPMYQ 343 (476)
Q Consensus 284 I~DEv~~g~-r~g~~---~~~~~~g~~pD----i~t--~sK~lg~G~~-iG~~~~~~~i~---------~~l~~~~~~~~ 343 (476)
++||+|.+. +.... +........+| ++| .=|.+++ +- .+++..+...+ +.++. .+..
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~--al~m 391 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNN--AFML 391 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHH--HHHH
Confidence 999999655 44332 11111234456 554 4487763 32 34443333211 12221 1112
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCc--eEeee-------------------
Q 011856 344 AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA--ICGGY------------------- 399 (476)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~v~~------------------- 399 (476)
..|.|.+-+.++..-.+-..++. .++.++..+....+|+.|.+....+... ..+.+
T Consensus 392 ~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~ 471 (720)
T PRK13578 392 HASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS 471 (720)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence 33446666666665554444442 5677788888888888883332211111 00100
Q ss_pred ---eceeEEEE-E-----ecCCCcCchhhcccchH-----------HHHHHHHHHHHCCeEeccCCCcceE--EeCCCcH
Q 011856 400 ---ISGMFGFF-F-----TEGPVYNFEDAKKSETT-----------KFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSS 457 (476)
Q Consensus 400 ---~g~~~~i~-~-----~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~~~~~~~~~~~--~~~~~t~ 457 (476)
.-.+.++. + .-++..-.. ..+.-. -...+.+.|.++||.+.-.+...+. ++...|+
T Consensus 472 ~~p~~~whgf~~~~~~~~~lDP~KltI--~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~ 549 (720)
T PRK13578 472 FEPGEKWHGFEGYAEDQYFVDPCKLLL--TTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDM 549 (720)
T ss_pred cccCccccccccccccccccCCceEEE--EcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCH
Confidence 00000000 0 000000000 001000 0356778888899998877655543 3788899
Q ss_pred HHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVK 471 (476)
Q Consensus 458 e~i~~~~~~l~~~~ 471 (476)
++++.++++|.++-
T Consensus 550 ~~~~~Lv~aL~~f~ 563 (720)
T PRK13578 550 AKLQQLVAMLARFE 563 (720)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-08 Score=106.91 Aligned_cols=310 Identities=10% Similarity=-0.017 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHhhCCCCCeEE-EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVR-FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSP 215 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~-~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~ 215 (476)
.....+..+..++.+ +.++.+ ++||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+. .-...
T Consensus 194 ~G~i~eAe~~aA~~f-gAd~tyfvvNGTS~~n~av~~---a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~ 269 (713)
T PRK15399 194 TGPHLEAEEYIARTF-GAEQSYIVTNGTSTSNKIVGM---YAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNAL 269 (713)
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEEeCChHHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeeEEeccccccc
Confidence 333444445555556 666555 46666788888887 4567777888899999988888888887544321 11112
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCC---eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE-EEeccccC
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL-IFDEVMTG 291 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~---~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ll-I~DEv~~g 291 (476)
|++..... ..-+.+.+++.++++++. .++||+.|.+ .|.+.. ++.|.++| |+.+ ++||+|.+
T Consensus 270 Gi~g~I~~-----~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAhga 335 (713)
T PRK15399 270 GILGGIPR-----REFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAWVP 335 (713)
T ss_pred CCcCCCCh-----hhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccchh
Confidence 22110000 001458999999887643 4778888865 688887 88888888 6766 59999965
Q ss_pred c-cccccc----hhhccCCCCchh---h--hhhhcCCCC-cEEEEEecHHHH-HhhcCCCCccccCCCCCcHHHHHHHHH
Q 011856 292 F-RLAYGG----AQEYFGVTPDLT---T--LGKIIGGGL-PVGAYGGRRDIM-EMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (476)
Q Consensus 292 ~-r~g~~~----~~~~~g~~pDi~---t--~sK~lg~G~-~iG~~~~~~~i~-~~l~~~~~~~~~~t~~~~~~~~aaa~a 359 (476)
. +....+ +.. .+-.+|.+ | .=|.+++ + ..+++..+..+- +.++. .+....|.|.+-+.++..-.
T Consensus 336 h~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~--a~~m~~STSPsY~LmASLD~ 411 (713)
T PRK15399 336 YTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNE--AFMMHTSTSPSYPIVASVET 411 (713)
T ss_pred hhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHH--HHHHHcCCCcHHHHHHHHHH
Confidence 5 433221 111 11145765 3 4487763 3 344554433221 12221 11233444777777777777
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeee------ecee------EEEEEec--------CCCcC
Q 011856 360 TLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGY------ISGM------FGFFFTE--------GPVYN 415 (476)
Q Consensus 360 al~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~------~g~~------~~i~~~~--------~~~~~ 415 (476)
+...++. .++.++..+....+|+.|.++..... +...+.+ ...+ -|.-|.. ++..-
T Consensus 412 a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~Kl 491 (713)
T PRK15399 412 AAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKV 491 (713)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceE
Confidence 7666652 56778888888889988887632110 0011110 0000 0000000 00000
Q ss_pred chhhccc----------chHHHHHHHHHHHHCCeEeccCCCcceE--EeCCCcHHHHHHHHHHHHHHH
Q 011856 416 FEDAKKS----------ETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 416 ~~~~~~~----------~~~~~~~~~~~l~~~Gv~~~~~~~~~~~--~~~~~t~e~i~~~~~~l~~~~ 471 (476)
. ...| ...-...+.+.|.++||.+.-.+...+. ++...|+++++.++++|.++-
T Consensus 492 t--I~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~ 557 (713)
T PRK15399 492 T--ILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFK 557 (713)
T ss_pred E--EEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0 0001 0112356778888999998877655543 378889999999999998763
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-08 Score=91.22 Aligned_cols=309 Identities=16% Similarity=0.144 Sum_probs=171.3
Q ss_pred CcHHHHHHHHHHHHh----c---CCCCC----CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKK----G---TSFGA----PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~----~---~~~~~----~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (476)
..+.|.+|.-..+.+ | -.|+. .++.+.-..++..++| +.+.+-+ -.||+.||.+++.. ...+++.
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LF-ga~~anVQPhSGs~AN~av~~A--ll~pGDt 114 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLF-GAEYANVQPHSGSQANQAVYLA--LLQPGDT 114 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHh-CCCccccCCCCchHHHHHHHHH--HcCCCCe
Confidence 579999999888876 1 11221 2334444445555566 5554433 35899999999983 2345566
Q ss_pred EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------CHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
|+..+-+.-|+.... .++ ...|. .-+++.++.+ |.|+++++.+++ +.++||+--.
T Consensus 115 imgm~l~~GGHltHg-----~~v------~~sG~----~~~~v~Y~vd~et~~IDyD~~~k~a~e~--kPK~ii~G~S-- 175 (413)
T COG0112 115 IMGLDLSHGGHLTHG-----SPV------NFSGK----LFNVVSYGVDPETGLIDYDEVEKLAKEV--KPKLIIAGGS-- 175 (413)
T ss_pred EecccCCCCCcccCC-----CCC------Cccce----eEEeEecccccccCccCHHHHHHHHHHh--CCCEEEECcc--
Confidence 666543332321110 000 00010 0122333322 789999999876 4555665321
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecH-HHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR-DIM 332 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~-~i~ 332 (476)
.--...+ +++++++|++.|++|++|=+| .|+ -.|.+ . ..+.. .|++| .-|+|-| -|.|.+++++ ++.
T Consensus 176 aY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~-p-~P~~~-AdvVTtTTHKTlrG-PrGG~Il~~~eel~ 247 (413)
T COG0112 176 AYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVH-P-NPLPH-ADVVTTTTHKTLRG-PRGGIILTNDEELA 247 (413)
T ss_pred ccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccC-C-CCCCc-cceEeCCcccCCCC-CCceEEEeccHHHH
Confidence 1112344 999999999999999999999 777 33322 1 11221 57774 5599874 4677778874 888
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
+.+.. ...-+..+++-+-..||. -++....+ .++.+++.++.+.|.+.|.+.+.+. .. -.-...++.+++
T Consensus 248 kkin~---aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~v--vs-GgTdnHl~lVDl 321 (413)
T COG0112 248 KKINS---AVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKV--VS-GGTDNHLVLVDL 321 (413)
T ss_pred HHhhh---hcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeE--ec-CCccceEEEEEc
Confidence 88873 112223233222222222 22333333 4567778888888888888754321 11 011233555665
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC----------cceEE------eCCCcHHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFT------SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~~------~~~~t~e~i~~~~~~l~~~~~ 472 (476)
..... ........|-+.||.+....- ..+|+ .....++|.+++.+.+.+++.
T Consensus 322 ~~~~~------------~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~ 389 (413)
T COG0112 322 RSKGL------------TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD 389 (413)
T ss_pred ccCCC------------CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 42110 113334455566888764421 12465 245678888888888887765
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=110.31 Aligned_cols=307 Identities=9% Similarity=0.004 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDS 214 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~ 214 (476)
+.....+..+..++.+ +.++.+| +||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+. .-..
T Consensus 193 ~~G~i~eAe~~AA~~f-gAd~tyfvvNGTS~~n~av~~---a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 193 HSGPHKEAEEYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred CChHHHHHHHHHHHHh-CCCcEEEEeCchHHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 3334445555555556 6666555 6666778887777 4557777888899999998888888887544321 1111
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
.|+..... .. .-+.+.+++.++++++.. .+||+.|.+ .|.+.. ++.|.++|+.++ |++||+|.+
T Consensus 269 ~Gi~g~I~--~~---~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwga 335 (714)
T PRK15400 269 YGILGGIP--QS---EFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWVP 335 (714)
T ss_pred cCCccCCC--cc---ccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccchh
Confidence 22211000 00 014799999998876433 578888866 688888 899999999887 689999965
Q ss_pred c-cccccc----hhhccCCCC-c--hhh--hhhhcCCCCc-EEEEEe----c-HHHHHhhcCCCCccccCCCCCcHHHHH
Q 011856 292 F-RLAYGG----AQEYFGVTP-D--LTT--LGKIIGGGLP-VGAYGG----R-RDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (476)
Q Consensus 292 ~-r~g~~~----~~~~~g~~p-D--i~t--~sK~lg~G~~-iG~~~~----~-~~i~~~l~~~~~~~~~~t~~~~~~~~a 355 (476)
. +....+ +.. .|-.+ | ++| .=|.+++ +. .+++.. . +.+-+.+. ...|.|.+-+.++
T Consensus 336 h~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~------m~~STSPsY~l~A 407 (714)
T PRK15400 336 YTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM------MHTTTSPHYGIVA 407 (714)
T ss_pred hhccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH------HHcCCCcHHHHHH
Confidence 5 433222 111 22221 3 444 4477763 22 222211 1 22222222 3334477777777
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCceEeeeece--------------eEEEE-E-----ecC
Q 011856 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISG--------------MFGFF-F-----TEG 411 (476)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~--------------~~~i~-~-----~~~ 411 (476)
..-.+...++. .++.++..+....+|+.|.++.... ++...+.+.-. +.++. + .-+
T Consensus 408 SLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD 487 (714)
T PRK15400 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (714)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence 77777666653 5677888888888998887753210 00011110000 00000 0 000
Q ss_pred CCcCchhhcccc----------hHHHHHHHHHHHHCCeEeccCCCcceE--EeCCCcHHHHHHHHHHHHHH
Q 011856 412 PVYNFEDAKKSE----------TTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 412 ~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~~~~~~--~~~~~t~e~i~~~~~~l~~~ 470 (476)
+..-. ...|. ..-...+.+.|.++||.+.-.+...+. ++...|+++++.++++|.++
T Consensus 488 P~Klt--i~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 488 PIKVT--LLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred CceEE--EEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00000 00000 111346777888999999877655543 37889999999999999876
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-08 Score=96.94 Aligned_cols=311 Identities=10% Similarity=-0.021 Sum_probs=177.5
Q ss_pred CcHHHHHHHHHHHHh--cCC-------CCC--CCHHHHHHHHHHHhhCCCCC--eE-EEeCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKK--GTS-------FGA--PCLLENVLAEMVISAVPSIE--MV-RFVNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~--~~~-------~~~--~~~~~~~la~~l~~~~~~~e--~v-~~~~sGseA~~~al~~ar~~~~~ 181 (476)
-+++|++++.+.+.+ +.. ... ..+...+..+.|.+++.-++ +| ++..|||.++++++.. ...++
T Consensus 18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~n--l~~~~ 95 (365)
T PLN02452 18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLN--LCKPG 95 (365)
T ss_pred CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHh--cCCCC
Confidence 378999988877643 111 111 12455667777777764222 44 5558899999999984 22345
Q ss_pred ceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
+++++...+++|....-... .|...... ...... ... ..+++++ +. .++...|.+.++...+|
T Consensus 96 ~~~l~~~~G~fg~r~~~~a~~~g~~~~~~-~~~~~~--------~~~--~~~~~~~----~~-~~~~~~v~~~hnETstG 159 (365)
T PLN02452 96 DKADFVVTGSWSKKAAKEAKKYCKTNVIA-SGKDEK--------YTK--IPSVSEW----EL-TPDAKFVHICANETIHG 159 (365)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCCcEEE-ecCCCC--------CCC--CCChHHc----CC-CCCCcEEEECCCCCCCc
Confidence 67777777776644332222 22211100 000000 000 0134443 22 23567777777777778
Q ss_pred cc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCC
Q 011856 261 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 338 (476)
Q Consensus 261 ~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~ 338 (476)
.. .+ ++++. ++++|+|-+++=. +...-.+.+++ |+.+--|.+| .| +|.+++++++++.+...
T Consensus 160 v~~~~----~~~i~------~~~lvVDa~Ss~g--~~pidv~~~~v--~~~saqK~lGP~G--l~~v~vr~~~l~~~~~~ 223 (365)
T PLN02452 160 VEFKD----YPDVG------NVPLVADMSSNFL--SKPVDVSKYGV--IYAGAQKNVGPSG--VTIVIIRKDLIGNARPI 223 (365)
T ss_pred EecCc----ccccC------CCeEEEECCcccc--CcccCHHHcCE--EEEecccccCCCC--eEEEEEcHHHHhhcccC
Confidence 84 55 44443 3899999888511 11223344554 5667779997 34 88999999998776532
Q ss_pred CCcc--------ccCCC-CCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeE
Q 011856 339 GPMY--------QAGTL-SGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 404 (476)
Q Consensus 339 ~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~ 404 (476)
.+.+ ..+++ +.|.....+..++|+.+.+ +...++.+++.+++++.|++...-+....+.. .....+
T Consensus 224 ~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~v 303 (365)
T PLN02452 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNV 303 (365)
T ss_pred CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEE
Confidence 1111 11233 4456666777788888765 34566667777777777776310011111101 112223
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.+. +.....+|.+.+.++|+...++. ...+|++ -.++.++++.+++.+++.-++
T Consensus 304 sF~~~-------------~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 304 PFTLG-------------GSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEEcC-------------CchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 33332 22355789999999999987763 2246775 467999999999999987654
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=99.18 Aligned_cols=308 Identities=17% Similarity=0.138 Sum_probs=152.0
Q ss_pred CcHHHHHHHHHHHHhcCC-------CCCCC----HHHHHHHHHHHhhCCCCC----eEEE-eCCHHHHHHHHHHHHHhcc
Q 011856 116 ADDQVLAALGETMKKGTS-------FGAPC----LLENVLAEMVISAVPSIE----MVRF-VNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-------~~~~~----~~~~~la~~l~~~~~~~e----~v~~-~~sGseA~~~al~~ar~~~ 179 (476)
..|.+.+++...+.+-.. +..-. +.+.-..++..+++ +.+ .+-+ ..||+.||.+++.. ...
T Consensus 32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF-~~~~~~w~anvqp~SGs~An~av~~a--Ll~ 108 (399)
T PF00464_consen 32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELF-GAEPKEWYANVQPHSGSQANLAVYMA--LLK 108 (399)
T ss_dssp --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHH-T-STTTEEEE---SSHHHHHHHHHHH--HT-
T ss_pred cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHh-CCCcccceEEeecCCchHHHHHHHHH--HHh
Confidence 357777766655544211 11112 33333344455555 434 3322 45899999999983 234
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------CHHHHHHHHhcCCCCeEEEEEc
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~e 253 (476)
++++|+.++...-|+..........++-. ....-+.+.++.+ |.+.++++++++ +.++||+.
T Consensus 109 pGD~Im~l~l~~GGHlshg~~~~~~~~~~----------~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G 176 (399)
T PF00464_consen 109 PGDTIMGLSLPHGGHLSHGSSVNFKKISA----------SGLYFESVPYPVDPDTGLIDYDELEKLAKEH--KPKLIICG 176 (399)
T ss_dssp TT-EEEEEEGGGT--GGGT-TTSHSBSSH----------HHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEEE
T ss_pred hcCcEEecChhhccccccccccccccccc----------ccceEEEEeeeeecCCCeECHHHHHHHHhhc--CCCEEEEC
Confidence 56778877654323211000000000000 0000011111111 799999999876 66778887
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec-
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR- 328 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~- 328 (476)
...-. ...+ +++++++|++.|++|++|-.| .|+ -.| .+ ...+.. .|++|. -|+|.| -+.|.++.+
T Consensus 177 ~S~y~--~~~d----~~~~reIad~vga~l~~D~sH~~GLIa~g-~~-~~P~~~-ADvvt~sThKtl~G-PrggiI~~~~ 246 (399)
T PF00464_consen 177 ASSYP--RPID----FKRFREIADEVGAYLMADISHIAGLIAGG-LF-PNPFPY-ADVVTGSTHKTLRG-PRGGIILTNK 246 (399)
T ss_dssp -SSTS--S-------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS---GCCT-SSEEEEESSGGG-S-SS-EEEEES-
T ss_pred chhcc--CccC----HHHHHHHHHhcCcEEEecccccccceehh-ee-cCcccc-ceEEEeeccccccc-cCceEEEEcC
Confidence 64321 1233 899999999999999999999 676 333 22 123333 688865 499974 467777888
Q ss_pred -------------HHHHHhhcCCCCccccCCCCCcHHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 329 -------------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 329 -------------~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+++.+.+.. ...-+..+++.....|++ .++....+ .++.+++.++.+.|.+.|.+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~l~~~I~~---avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v 323 (399)
T PF00464_consen 247 GSKNVDKKGKEIDEELAEKIDS---AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKV 323 (399)
T ss_dssp SEEEE-TTS-EEEHHHHHHHHH---HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EE
T ss_pred CccccCCcccccHHHHHHHhcc---ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence 778887763 111112222222222222 33444333 5677888899999999988864332
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe------CCCc
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS------LAHS 456 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~------~~~t 456 (476)
... .-...++++++.... ....++.+.|.+.||.+.... ...+|+. -...
T Consensus 324 --~~g-gTd~H~vlvd~~~~~------------~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~ 388 (399)
T PF00464_consen 324 --VTG-GTDNHQVLVDLRSFG------------IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMK 388 (399)
T ss_dssp --GGG-S-SSSEEEEEGGGGT------------S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--
T ss_pred --EEC-CCCCCeEEEEecccc------------cchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCC
Confidence 110 113345566653211 112456677778899886431 1246773 4557
Q ss_pred HHHHHHHHHH
Q 011856 457 SDDIQHTITA 466 (476)
Q Consensus 457 ~e~i~~~~~~ 466 (476)
++|++++.+.
T Consensus 389 e~dm~~iA~~ 398 (399)
T PF00464_consen 389 EEDMKEIAEL 398 (399)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777776553
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-08 Score=104.14 Aligned_cols=310 Identities=11% Similarity=0.139 Sum_probs=169.3
Q ss_pred EEecccChhhccCCC-CcHHHHHHHHHHHHhcCCCC-CCC-------HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG-APC-------LLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~~~-~~~-------~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~ 170 (476)
|.+|.+. .+.+| -++.|.+++.+...-.+.|+ |.. +...++...++++++ +.+++-++.++|.+.++
T Consensus 104 ~~~fiG~---G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea 180 (993)
T PLN02414 104 FKSYIGM---GYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEA 180 (993)
T ss_pred cccccCC---CCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHH
Confidence 4454443 55566 56677688877655433333 221 223466777888876 56789999999999997
Q ss_pred HHHHHHhcc--CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 171 VLRLARAFT--GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 171 al~~ar~~~--~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
++... ..+ ++++|++.+..| ..+...+..... ..|+ ++..++..+.+ ...+.++
T Consensus 181 ~~~a~-~~~~g~~~~VlVs~~~h-P~~~~v~~t~a~---------~~Gi------eV~~v~~~~~~-------~~~~~v~ 236 (993)
T PLN02414 181 MAMCN-NILKGKKKKFLIASNCH-PQTIDVCQTRAD---------GLGL------EVVVADEKDFD-------YSSGDVC 236 (993)
T ss_pred HHHHH-hcccCCCCEEEEcCccC-HhHHHHHHHhhh---------hcCC------EEEEecchhhc-------cccCceE
Confidence 77633 333 335666655544 444333322100 0111 24444432211 1122455
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCccccccchhhccCCCCchhhh-hhhcC-----CCC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGL 320 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~r~g~~~~~~~~g~~pDi~t~-sK~lg-----~G~ 320 (476)
+++ ..+.+..|.+.+ +++|.++|+++|+++++ |-+..+. . -....+ ..|+++. ++.++ ||-
T Consensus 237 ~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iVaad~lal~~-l---~~pge~--GADi~vgsgqKwg~P~G~GGP 305 (993)
T PLN02414 237 GVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVMATDLLALTM-L---KPPGEW--GADIVVGSAQRFGVPMGYGGP 305 (993)
T ss_pred EEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEEEECHHHhcC-C---CCHhhc--cCcEEEECCCccccCCCCCCC
Confidence 554 334456899988 99999999999999999 4332111 0 011122 3466642 22223 454
Q ss_pred cEEEEEecHHHHHhhcCC----------CCcc---------c--cCCCCCcHH---HHHHHHHHH--HHhcC---CCHHH
Q 011856 321 PVGAYGGRRDIMEMVAPA----------GPMY---------Q--AGTLSGNPL---AMTAGIHTL--KRLKE---PGTYE 371 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~----------~~~~---------~--~~t~~~~~~---~~aaa~aal--~~~~~---~~~~~ 371 (476)
..|++.+++++.+.+-.. .+.+ | .-....|.- +..+++++. ..+.. ++..+
T Consensus 306 ~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ 385 (993)
T PLN02414 306 HAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQ 385 (993)
T ss_pred CeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 589999999886644210 0110 0 001112332 222333222 11121 44567
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 451 (476)
++.++..+++++|.+.+. .+... .....+.+.+ ++ ..++.+.|.++||.++....+.+++
T Consensus 386 ri~~la~~l~~~L~~~G~--~~~~~--~~f~~vt~~~-------------~~---~~~v~~~L~~~gI~l~~~~~~~lrv 445 (993)
T PLN02414 386 RVHGLAGVFAAGLKKLGF--QVQSL--PFFDTVKVKC-------------SD---ADAIADAAAKVGINLRVVDANTVTV 445 (993)
T ss_pred HHHHHHHHHHHHHhhcCC--ccCCC--CCcCeEEEec-------------CC---HHHHHHHHHHCCCeeEEecCCeEEE
Confidence 788888888888866431 11111 1111122221 11 1578899999999887665445555
Q ss_pred --eCCCcHHHHHHHHHHHH
Q 011856 452 --SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~ 468 (476)
...+|++|||.++++|.
T Consensus 446 s~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 446 SFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EeeccCCHHHHHHHHHHHc
Confidence 46789999999999996
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-08 Score=94.75 Aligned_cols=289 Identities=11% Similarity=0.026 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHHHhcc--CCceEEEEeCCCCCCchh--HHhhcCCC-CccCC
Q 011856 139 LLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFT--GRERIIKFEGCYHGHADP--FLVKAGSG-VATLG 210 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ar~~~--~~~~ii~~~~~yhg~~~~--~~~~~g~~-~~~~~ 210 (476)
+...+..+.|.+.+.. .+-++++.|||.++++++.. +. +++++++. + ++|.... .+...|.+ +..
T Consensus 39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~n---l~~~~g~~vLv~-g-~FG~r~~~eia~~~g~~~v~~-- 111 (374)
T TIGR01365 39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWS---MLGCRGVDVLAW-E-SFGKGWVTDVTKQLKLPDVRV-- 111 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHH---cCCCCCCeEEEE-C-HHHHHHHHHHHHhcCCCCcEE--
Confidence 4455666677777642 22356799999999999994 33 34466653 3 5554322 22223331 222
Q ss_pred CCCCCCCCCCCCCceeeccCC---CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEe
Q 011856 211 LPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFD 286 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~D 286 (476)
+.+++. |+++++. + .. |.+..+-..+|...| ++ +++++ +++++|+|
T Consensus 112 ---------------l~~~~g~~~~~~~ve~--~---~~---v~~vhnETSTGv~np----v~---~i~~~~~~~lliVD 161 (374)
T TIGR01365 112 ---------------LEAEYGKLPDLKKVDF--K---ND---VVFTWNGTTSGVRVP----NG---DFIPADREGLTICD 161 (374)
T ss_pred ---------------EcCCCCCCCCHHHcCC--C---CC---EEEecCCCchheecc----cc---ccccccCCCcEEEE
Confidence 222332 5676652 1 12 344444455788887 44 33333 58999999
Q ss_pred ccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCC-----c--------------cccC
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-----M--------------YQAG 345 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~-----~--------------~~~~ 345 (476)
-+-+ |. +..+-.+ + .|++ +-.|+|++---++.++.+++.++......+ . ....
T Consensus 162 avSs-~g-~~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T TIGR01365 162 ATSA-AF-AQDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGS 235 (374)
T ss_pred ccch-hc-CCCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCC
Confidence 7664 20 1112222 2 5665 355999841127888889988776542111 0 0112
Q ss_pred CC-CCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCce--EeeeeceeEEEEEecCCCcCchh
Q 011856 346 TL-SGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPVYNFED 418 (476)
Q Consensus 346 t~-~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~~~~~~~ 418 (476)
|. ..+..+..+...+|+.+.+ ++..++.+++.+.+++.++++..-..... ..+ .-....+.+..+.+....
T Consensus 236 t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~r-S~tvt~v~~~~~~~~~~~- 313 (374)
T TIGR01365 236 TINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIR-SNTSVCLKVVDPAIDALD- 313 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhc-CCCeEEEEeCCccccccc-
Confidence 32 2333444555566665544 34566666777777777776641111111 111 111223333211110000
Q ss_pred hcccchHHHHHHHHHHHHCCeEeccCCC----cceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 419 AKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..+..+...++.+.|.++||.+.++.. ..+|+ .-.++.+|++.+++.|+=+.++
T Consensus 314 -~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 314 -EDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred -cchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 001111136788999999998887643 45677 3567999999999999877654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.1e-08 Score=91.23 Aligned_cols=290 Identities=14% Similarity=0.111 Sum_probs=157.3
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHH-HHHHHHHHHhc--c---------CCceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEA-CMGVLRLARAF--T---------GRERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA-~~~al~~ar~~--~---------~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
..++.+.+++.++ ..++++...+.|-. +.-++..+..+ . ++-+++...++|-.+ ...+..-|-
T Consensus 71 ipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRH-Fai~E~~Gi--- 146 (425)
T PF12897_consen 71 IPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRH-FAITEHFGI--- 146 (425)
T ss_dssp -HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHH-HHHHHHCT----
T ss_pred hHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHH-HHHHHhhCc---
Confidence 3455555555554 56777765544444 44444433222 1 245788888888653 233322222
Q ss_pred cCCCCCCCCCCCCCCCceeeccCC----CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHhCCE
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFN----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGAL 282 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l-~~~~g~l 282 (476)
+.+.+|.+ |++.+|+++.+. +.++.++|-|.++|...+..+++-.++|.++ +...++.
T Consensus 147 ----------------emi~VpM~~dGPDmD~Ve~LV~~D-~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFR 209 (425)
T PF12897_consen 147 ----------------EMIPVPMTEDGPDMDMVEELVAED-PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFR 209 (425)
T ss_dssp ----------------EEEEEEEETTEE-HHHHHHHTHTS-TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-E
T ss_pred ----------------EEEecCCCCCCCCHHHHHHHHhcC-CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeE
Confidence 34445543 899999999754 4799999999998855556677778888888 4468999
Q ss_pred EEEecccc--Ccc-ccccc-------hhhccCCCCchh----hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCC
Q 011856 283 LIFDEVMT--GFR-LAYGG-------AQEYFGVTPDLT----TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348 (476)
Q Consensus 283 lI~DEv~~--g~r-~g~~~-------~~~~~g~~pDi~----t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~ 348 (476)
++.|.+|+ .+. ....- ..+..| .||.+ +.||.--+|-.++++.++++-++.+.+ .....|.+
T Consensus 210 I~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~---~~~~~tIg 285 (425)
T PF12897_consen 210 IFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKK---HLSVQTIG 285 (425)
T ss_dssp EEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHH---HHHHH-S-
T ss_pred EEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHH---HhcCceeC
Confidence 99999995 111 11000 001111 35533 689976667779999999988877762 23344566
Q ss_pred CcHHHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHHHHH-------Hhh-hcCC-ceEeeeeceeEEEEEecCCCcCch
Q 011856 349 GNPLAMTAGIHTLKRLKE-P-GTYEYLNKITGELTQGIID-------AGK-KAGH-AICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 349 ~~~~~~aaa~aal~~~~~-~-~~~~~~~~~~~~l~~~L~~-------~~~-~~~~-~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
.+-+.|..-.. ++.+ + .+.++.++..+.++-+++. .+. ..++ .+..+..|.|+.++..+.
T Consensus 286 pdKvNQLRHvr---ff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------ 356 (425)
T PF12897_consen 286 PDKVNQLRHVR---FFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------ 356 (425)
T ss_dssp --HHHHHHHHH---HHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT------
T ss_pred ccHHHHHHHHH---HhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC------
Confidence 66666554333 3444 4 6778888877777655432 222 3333 344556677778776442
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCC--Cc--------ceEE-eCCCcHHHHHHHHHHHHHHHH
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQ--FE--------AGFT-SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~--------~~~~-~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+.++++.+.+.||.+.+.+ ++ .+|+ +..-+.+|++.+++.+.-++.
T Consensus 357 --------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 357 --------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp ---------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 24788999999999998854 11 3577 556689999999998876653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-07 Score=90.60 Aligned_cols=301 Identities=17% Similarity=0.183 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
++..+|.++|++.. +.|.|.+ -|+|+++=.+.+.+.|+|- +.+++++...+-||.-.......|..+..+...
T Consensus 109 ~li~~Lq~~L~~IT-G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~ 187 (496)
T COG1003 109 ELIYELQEWLKEIT-GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCD 187 (496)
T ss_pred HHHHHHHHHHHHhc-CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecC
Confidence 44568888998888 7777766 4688888888777777762 245667777789998777777777765543322
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc---
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM--- 289 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~--- 289 (476)
....+ |+++|++.+.+ +++++.+... ++-|.. +++ +.+|+++.+++|..|..|-+-
T Consensus 188 ~~G~V--------------DlddLk~k~~~---~~AalMiTnP-sT~GvF--E~~-I~ei~~ivH~~Gg~vY~DGANlNA 246 (496)
T COG1003 188 ENGNV--------------DLDDLRAKAED---NLAALMITNP-STLGVF--EED-IREICEIVHEAGGQVYYDGANLNA 246 (496)
T ss_pred CCCCc--------------cHHHHHHHhcc---ceeEEEeccC-cccccc--hhh-HHHHHHHHHHcCCEEEecCcchhh
Confidence 22222 89999999873 6776655432 334543 334 999999999999999999765
Q ss_pred -cCc-cccccch-hhccCCCCchhhhhhhcCC-CCcEEEEEecHHHHHhhcC------CCC----------ccccCCCCC
Q 011856 290 -TGF-RLAYGGA-QEYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAP------AGP----------MYQAGTLSG 349 (476)
Q Consensus 290 -~g~-r~g~~~~-~~~~g~~pDi~t~sK~lg~-G~~iG~~~~~~~i~~~l~~------~~~----------~~~~~t~~~ 349 (476)
.|. |.|.++. ..|+++. -||+=--|| |-..|-+.++.++...+-. ... ......+-+
T Consensus 247 ~vG~~rPGd~G~DV~HlNLH---KTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G 323 (496)
T COG1003 247 IVGLARPGDMGFDVVHLNLH---KTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG 323 (496)
T ss_pred hhccccccccccceEEeecc---cccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccC
Confidence 466 6665432 1222211 034433343 3456777777777665431 000 001223444
Q ss_pred cHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 350 NPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 350 ~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
|......+.+.+..+..+.+ -+..--+..|+.++|+.. ++++. .+.. ...-++.-+ ...........
T Consensus 324 s~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~---y~~~y--~~~~-~~~HE~ild----~r~l~~~~Gv~ 393 (496)
T COG1003 324 SASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY---YPVPY--TGEN-RVAHECILD----ARPLKKETGVR 393 (496)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc---Ccccc--CCCC-cceeEEEee----chHhHhhcCCc
Confidence 55555555566655544333 344445677888888763 33221 1111 122222110 00011111233
Q ss_pred HHHHHHHHHHCCeEeccCCCc-----ceEE-e-CCCcHHHHHHHHHHHHHHHHHh
Q 011856 427 FARFYRGMLEEGVYFAPSQFE-----AGFT-S-LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 427 ~~~~~~~l~~~Gv~~~~~~~~-----~~~~-~-~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+++.|++.|++.-...++ .+.+ + =.-+.+++|++++++.++.++.
T Consensus 394 ~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea 448 (496)
T COG1003 394 ALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEA 448 (496)
T ss_pred HHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 568899999999976555444 2233 2 3447899999999999887653
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-08 Score=95.75 Aligned_cols=175 Identities=23% Similarity=0.242 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHhhCCCC--------CeEEEeCCHHHHHHHHHHHHHhcc-------C----CceEEEEeCCCCCCchhH
Q 011856 138 CLLENVLAEMVISAVPSI--------EMVRFVNSGTEACMGVLRLARAFT-------G----RERIIKFEGCYHGHADPF 198 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~--------e~v~~~~sGseA~~~al~~ar~~~-------~----~~~ii~~~~~yhg~~~~~ 198 (476)
.+.+.++.+++++.++-+ -.-+||+|||++|..|+..||... + .+.+++....-|-+..-+
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 467788889999988522 257899999999999999887541 1 234666666667777777
Q ss_pred HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCCeE-EEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIA-AIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a-~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
+...|.++..++......+ |+++|++.+++. .+.+. +|+..--..+.|.+.| +++|.++
T Consensus 158 a~~lGlg~~~I~~~~~~~m--------------d~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i 219 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRM--------------DIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADI 219 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB---------------HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHH
T ss_pred cceeeeEEEEecCCcchhh--------------hHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhh
Confidence 7777765443322111111 789999888642 11233 4444544456888988 9999999
Q ss_pred HHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH
Q 011856 276 TKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 276 ~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~ 330 (476)
|++|+++|.+|-++.|. ......-.-..++ ..|-++ .-|.++..++.|+++.+.+
T Consensus 220 ~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 220 CEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp HHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred ccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 99999999999999873 1111111112232 235454 5699887788999977654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=90.76 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=143.3
Q ss_pred cCCC--CcHHHHHHHHHHHHhcCC--CC-CCC---HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCce
Q 011856 112 IIGH--ADDQVLAALGETMKKGTS--FG-APC---LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 112 ~lG~--~~p~v~~a~~~~l~~~~~--~~-~~~---~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (476)
++|- -+|++.+++.+.+..... +. ... .-...+++.++... +.+.+..+|.-+.|+..++- ++..+..
T Consensus 33 ~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~-~aea~~ivnnn~aAVll~~~---al~~~~E 108 (395)
T COG1921 33 NLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLT-GAEAAAIVNNNAAAVLLTLN---ALAEGKE 108 (395)
T ss_pred cCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhccc-chhheeeECCcHHHHHHHHh---hhccCCe
Confidence 4554 379999999988876321 11 111 11224455554444 67889999989999888887 4554545
Q ss_pred EEEEeC----CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 184 IIKFEG----CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 184 ii~~~~----~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
+|+..+ ++|......+...|.+....... + .....+++.++.++. ....-+..++++..
T Consensus 109 vVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n-------------~t~~~d~~~AIne~t-a~llkV~s~~~~f~ 171 (395)
T COG1921 109 VVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---N-------------RTHLKDYELAINENT-ALLLKVHSSNYGFT 171 (395)
T ss_pred EEEEccccccCCCCChhHHHHHcCCEEEEeccc---C-------------cCCHHHHHHHhccCC-eeEEEEeecccccc
Confidence 554322 46666667777776654332111 0 115788999998641 22233445555545
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhc
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
+.+. ++++.++|++||+++|+|..-... + -.....+.+...+|++++| |.|+ |.+.|.++|++++++.++
T Consensus 172 ~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq 244 (395)
T COG1921 172 GMLS-----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQ 244 (395)
T ss_pred cccc-----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHHH
Confidence 5443 788999999999999999876322 2 1122234455568999887 8777 456888899999999987
Q ss_pred CCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 337 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
... ..-.+-......++..++|+....++
T Consensus 245 ~~~---l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 245 SHP---LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred hhh---hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 421 12234456778888889999877643
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-06 Score=81.81 Aligned_cols=283 Identities=14% Similarity=0.176 Sum_probs=159.9
Q ss_pred HHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCC
Q 011856 143 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 221 (476)
Q Consensus 143 ~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 221 (476)
++-..++++++ +.-+.-....+|.+-|+++..-|...++.+-++.+...|-.+...+..... ..
T Consensus 124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~---------------~~ 188 (450)
T COG0403 124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAE---------------GL 188 (450)
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcc---------------cC
Confidence 45556666664 333445556666666666654334333445555566677766666543211 11
Q ss_pred CCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCc--ccccc
Q 011856 222 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGF--RLAYG 297 (476)
Q Consensus 222 ~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~--r~g~~ 297 (476)
+-.+..++++|+++|++. .. +++.+++++-++.-|..+.. ++.|.+.++++|+++++ |=.-.++ .+|.+
T Consensus 189 g~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~ 261 (450)
T COG0403 189 GIEIEVVDADDLDDLESA-DD--GDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLKPPGEF 261 (450)
T ss_pred ceEEEEeccchhhhhhhc-cc--cCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccCCcccc
Confidence 124667777788888888 43 37888988866544435554 99999999999998774 5444444 33433
Q ss_pred chhhccCCCCchhh-----hhhhcC-CCCcEEEEEecHHHHHhhcC----------CCCc---------------cccCC
Q 011856 298 GAQEYFGVTPDLTT-----LGKIIG-GGLPVGAYGGRRDIMEMVAP----------AGPM---------------YQAGT 346 (476)
Q Consensus 298 ~~~~~~g~~pDi~t-----~sK~lg-~G~~iG~~~~~~~i~~~l~~----------~~~~---------------~~~~t 346 (476)
+ .||++ ||=-++ ||--.|++.++++++..+-- ..+. .-.+.
T Consensus 262 G--------ADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSN 333 (450)
T COG0403 262 G--------ADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSN 333 (450)
T ss_pred C--------CceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchh
Confidence 3 25552 565566 66678999999988765420 0000 01222
Q ss_pred CCCcHHHHHHHHHHHH-HhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc
Q 011856 347 LSGNPLAMTAGIHTLK-RLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (476)
Q Consensus 347 ~~~~~~~~aaa~aal~-~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (476)
.+.|..-++-+.+..- .+.. .++-++..++..++.++|++....+ .+.....|--+.+.- +
T Consensus 334 ICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~----~~~~~~fFdt~~v~~-----------~ 398 (450)
T COG0403 334 ICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV----ELVFDHFFDTFTVRV-----------P 398 (450)
T ss_pred hhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce----EeccccceeeEEEec-----------c
Confidence 2333322222211111 1221 3455667777778888887653211 111112222222211 1
Q ss_pred chHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 423 ETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
. .....+..+....|+-++......+.++ =.+|+++|+.+++.|....
T Consensus 399 ~-~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 399 E-EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred h-hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 1 3345666777778888877655555554 4668999999999887653
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-07 Score=89.43 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=91.9
Q ss_pred HHHHHHHHhhCCCCC-eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCC-CCCC
Q 011856 142 NVLAEMVISAVPSIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDS-PGVP 218 (476)
Q Consensus 142 ~~la~~l~~~~~~~e-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~-~~~~ 218 (476)
.+..+..++.+ +.+ ..+++||-|.||..++. +..++++.|.++...|-+....+.++|..+..+. ..+. .|+.
T Consensus 73 ~eAqe~aA~~f-gAd~tyFvvNGTS~ank~vi~---a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ 148 (557)
T COG1982 73 KEAQELAARVF-GADHTYFVVNGTSTANKAVIN---AVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGII 148 (557)
T ss_pred HHHHHHHHHHh-CCCceEEEECCccHHHHHHHH---hhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCcccccc
Confidence 34444444555 566 45567777888888888 6677788888889999988888888887443221 1111 1211
Q ss_pred CCCCCceeeccCCCHHHHHHHHhcCCCC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 219 KGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~-~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
.. -+.+.+++.+.++++. ..+||++|.+ .|.+.. +++|.+++.++++++.+||+|
T Consensus 149 gg----------I~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah 204 (557)
T COG1982 149 GG----------IPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAH 204 (557)
T ss_pred CC----------CCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcC
Confidence 10 1688999888877666 7788888876 578888 999999999999999999999
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-06 Score=86.55 Aligned_cols=231 Identities=14% Similarity=0.083 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccC--------Cc-------------------------
Q 011856 137 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG--------RE------------------------- 182 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~--------~~------------------------- 182 (476)
....+.++.+++++.++ +...-.||+|||+||..+|.+||.... +.
T Consensus 121 ~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~ 200 (608)
T TIGR03811 121 TSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLES 200 (608)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccc
Confidence 45788899999999986 334567999999999999999986420 00
Q ss_pred ----------------------eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-----CHHH
Q 011856 183 ----------------------RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSA 235 (476)
Q Consensus 183 ----------------------~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 235 (476)
.++.....-|-+..-++...|.+. ..++.+|.+ |+++
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~----------------~~vv~VpvD~~~rmd~~~ 264 (608)
T TIGR03811 201 AGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL----------------DQVIPVPVDSNYRMDINE 264 (608)
T ss_pred cccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc----------------ccEEEeecCCCCcCCHHH
Confidence 022222233444443433333321 123333322 7999
Q ss_pred HHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH---HHhCC--EEEEeccccCc-cc---c-c----c-
Q 011856 236 LENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT---KENGA--LLIFDEVMTGF-RL---A-Y----G- 297 (476)
Q Consensus 236 le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~---~~~g~--llI~DEv~~g~-r~---g-~----~- 297 (476)
|++.|++ .+..+.+|+..--..+.|.+-| +++|.++| +++|+ +|++|-+|.|+ +. . . .
T Consensus 265 L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~ 340 (608)
T TIGR03811 265 LEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPY 340 (608)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccccccccc
Confidence 9988863 2223445555544455888999 88888888 77898 69999999885 21 0 0 0
Q ss_pred ------------c-----------hhhccCC-CCchhh--hhhhcCCCCcEEEEEecH-HHHHhhcCCCCccc-------
Q 011856 298 ------------G-----------AQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEMVAPAGPMYQ------- 343 (476)
Q Consensus 298 ------------~-----------~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~-~i~~~l~~~~~~~~------- 343 (476)
| ....-++ ..|-+| .-|.+..-++.|+++.+. ++.+.+....++..
T Consensus 341 ~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p 420 (608)
T TIGR03811 341 DDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIP 420 (608)
T ss_pred chhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCc
Confidence 0 0000122 234444 348776667899887764 44444432111110
Q ss_pred ----cCCCCCcHH--HHHHHHHHHHHh--cC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 344 ----AGTLSGNPL--AMTAGIHTLKRL--KE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 344 ----~~t~~~~~~--~~aaa~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
..+..++.. .+++.-.+++.+ .. .++.++..+..+++.+.|++.
T Consensus 421 ~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 421 ALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 012223322 234444566655 22 567777778888888888774
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-06 Score=79.98 Aligned_cols=309 Identities=13% Similarity=0.043 Sum_probs=167.5
Q ss_pred cHHHHHHHHHHHHh--cCC-------CCC--CCHHHHHHHHHHHhhCC--CCCeEEEeC-CHHHHHHHHHHHHHhcc-CC
Q 011856 117 DDQVLAALGETMKK--GTS-------FGA--PCLLENVLAEMVISAVP--SIEMVRFVN-SGTEACMGVLRLARAFT-GR 181 (476)
Q Consensus 117 ~p~v~~a~~~~l~~--~~~-------~~~--~~~~~~~la~~l~~~~~--~~e~v~~~~-sGseA~~~al~~ar~~~-~~ 181 (476)
+++|.+++.+.+.+ +.. +.. ..+...+..+.|.+++. ...+|+|.. |||.++++++. .+. ++
T Consensus 16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~---Nll~~g 92 (364)
T PRK12462 16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPM---NFSRPG 92 (364)
T ss_pred CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHH---HcCCCC
Confidence 78888888877755 211 111 12445566666777664 223566554 58999999888 343 44
Q ss_pred ceEE-EEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 182 ERII-KFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 182 ~~ii-~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++ +...+++|....-... .| .+...... ... +.-.+| +++.+ +. .++.+.|.+.++...+
T Consensus 93 ~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~--~~~------~~~~~p--~~~~~----~~-~~d~~~v~~t~NETst 156 (364)
T PRK12462 93 AAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDG--AAS------GYRTLP--SLAEL----DW-DARAPFRHYVSNETVE 156 (364)
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC-CceEecCc--CCC------CCCcCC--CHHHh----cc-CCCCcEEEEccCCCCc
Confidence 4455 5566666543322221 12 22111000 000 000011 33433 22 1245667777777667
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecHHHHHhhc
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~~i~~~l~ 336 (476)
|+..+ ++.+.+++++|+|-+-+ + .+...-.+.+ |++ ..-|+|| +| ++.++.+++.++...
T Consensus 157 Gv~~~---------~~~~~~~~llvvD~sS~-~-~s~pid~~~~----dvi~agsQKnlgP~G--ltvvivs~~al~~~~ 219 (364)
T PRK12462 157 GLQFP---------DAAGLPDSPLIADMSSD-F-MSRPFDVEAY----GMVYAHAQKNLGPAG--VTVAIIRRALLERVP 219 (364)
T ss_pred eEecC---------cccccCCCeEEEEcCch-h-hCCCCChHHc----cEEEeeccccCCCCc--eEEEEECHHHHhhcc
Confidence 87765 23334799999996653 2 1112222333 665 3559998 34 677888999887765
Q ss_pred CCCCcc--------ccCCCC-CcHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 337 PAGPMY--------QAGTLS-GNPLAMTAGIHTLKRLKEP-----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 337 ~~~~~~--------~~~t~~-~~~~~~aaa~aal~~~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+.-+.+ ..++++ .+.....+...+|+.+.++ ...++.+++.+.+++.+.+...-+....+...+..
T Consensus 220 ~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~ 299 (364)
T PRK12462 220 DTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARST 299 (364)
T ss_pred ccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCc
Confidence 321111 123443 3455566667788877554 34445555555556555554211111111122222
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
| -+.|. .++.+...+|.+.+.++|+.-..+. .+.+|.+ -+++.|+++.+++-+++.-++
T Consensus 300 m-nv~f~-----------~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 300 M-NVAFR-----------FRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred c-eEEEE-----------cCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 22222 1244556789999999999865442 2346765 467999999999998877543
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-06 Score=92.65 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=150.5
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccC--CceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCC
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSP 215 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~--~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~ 215 (476)
..++.+.++++++ +..++-+..++|.+.++++... .+.+ +++|++.+..| ..+...+.. ...+
T Consensus 123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~-~~~~~~~~~vlv~~~~h-P~~~~v~~t~a~~~G---------- 190 (954)
T PRK05367 123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAK-RVSKSKSNRFFVDDDVH-PQTLDVLRTRAEPLG---------- 190 (954)
T ss_pred HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhh-hhccCCCCEEEEcCccC-HHHHHHHHHHHHhCC----------
Confidence 3466677888875 4568889999999999766533 3433 36676666555 433333221 1111
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc---cCc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM---TGF 292 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~---~g~ 292 (476)
+ +++.++.++ +++ .++++++++ .+.+..|.+.+ +++|.++|+++|+++++|-.+ +.+
T Consensus 191 -~------ev~~~~~~~--d~~------~~~~~~vlv-q~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l 250 (954)
T PRK05367 191 -I------EVVVGDAAK--ALD------HDDVFGVLL-QYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL 250 (954)
T ss_pred -C------EEEEecCcc--CCC------cccEEEEEE-ecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC
Confidence 1 233444322 111 125655543 34466889988 999999999999999999855 222
Q ss_pred -cccccchhhccCCCCchhhh--hhh---cC-CCCcEEEEEecHHHHHhhcCC---------C-Ccc-------------
Q 011856 293 -RLAYGGAQEYFGVTPDLTTL--GKI---IG-GGLPVGAYGGRRDIMEMVAPA---------G-PMY------------- 342 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~t~--sK~---lg-~G~~iG~~~~~~~i~~~l~~~---------~-~~~------------- 342 (476)
..+ .+| .|+++. -|- +| ||--.|++.+++++.+.+... + +.+
T Consensus 251 ~~pg------e~G--aDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRr 322 (954)
T PRK05367 251 TPPG------EMG--ADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRR 322 (954)
T ss_pred CChh------hcC--CCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccc
Confidence 222 222 366532 242 23 333488889999887776421 0 000
Q ss_pred ccCCCCCc-HHHHHHHHHH--HHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCc
Q 011856 343 QAGTLSGN-PLAMTAGIHT--LKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 416 (476)
Q Consensus 343 ~~~t~~~~-~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~ 416 (476)
..+|.+.. ..+..+..+. +..+.. +++.+++..+..++.++|.+.+.+ +... .....+.+.+
T Consensus 323 ekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~--~~~~--~~f~~~~~~~-------- 390 (954)
T PRK05367 323 EKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLE--VVHD--SFFDTLTVEV-------- 390 (954)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcc--cCCC--CCCCeEEEeC--------
Confidence 01121111 1111222222 232332 455677777888888888663222 1111 1011111221
Q ss_pred hhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 417 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
+ ....++.+.|+++||.+.......+++ .-..|++|||.+++.|.
T Consensus 391 -----~--~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 391 -----G--GDAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -----C--CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 0 013678899999999986554445666 46779999999999996
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-05 Score=72.94 Aligned_cols=201 Identities=22% Similarity=0.265 Sum_probs=113.3
Q ss_pred CcHHHHHHHHHH-HHh-----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEEe---CCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGET-MKK-----GTSFGAPCLLENVLAEMVISAVPSIEMVRFV---NSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~-l~~-----~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~---~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
|..+|.+|+++. +.. -+.|||.+..++.|.+-+++.+ +.|..++= .|||.|+..+|.- .+.+++.++.
T Consensus 25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf-gaE~ALVRpq~vSGTHAi~~~Lfg--~LrpGD~ll~ 101 (403)
T PF06838_consen 25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF-GAEDALVRPQFVSGTHAIALALFG--VLRPGDELLS 101 (403)
T ss_dssp HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC-T-SEEEEETTS-SHHHHHHHHHHH--H--TT-EEEE
T ss_pred HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh-CchhhhhcccccchHHHHHHHHHh--cCCCCCeEEE
Confidence 456777777653 211 1457778888999999999999 67777764 4899999999984 3446667776
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
..+.=.-.....+-..+. ..|.....+.....++.. |.+.+++.++. ++++|.+--.-+-.-.
T Consensus 102 ~tG~PYDTL~~VIG~~g~---------~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~---~tk~v~IQRSrGYs~R 169 (403)
T PF06838_consen 102 ITGKPYDTLEEVIGIRGN---------GPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKP---NTKMVLIQRSRGYSWR 169 (403)
T ss_dssp SSSS--CCHHHHHTSSSS---------SSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT---TEEEEEEE-S-TTSSS
T ss_pred cCCCchhhHHHHhCCCCC---------CCCChHHhCceeEEEeecCCCCcCHHHHHHhhcc---CceEEEEecCCCCCCC
Confidence 655322222222222222 111111111122222221 79999999983 6888888654433222
Q ss_pred ccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCC-c-EEEEEecHHHHHh
Q 011856 262 IAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL-P-VGAYGGRRDIMEM 334 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~-~-iG~~~~~~~i~~~ 334 (476)
-..+-+.++++.++.++. ++++++|..|..| -.- |...+-.|++ +|=|-.|||+ | .||+++++++++.
T Consensus 170 ~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~-----EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 170 PSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ-----EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVER 244 (403)
T ss_dssp ----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc-----CccccchhheeccceeCCCCCccCcCCEEechHHHHHH
Confidence 222333356666666654 7899999999887 322 3334456877 6889999996 5 6677999999987
Q ss_pred hc
Q 011856 335 VA 336 (476)
Q Consensus 335 l~ 336 (476)
..
T Consensus 245 ~a 246 (403)
T PF06838_consen 245 AA 246 (403)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-06 Score=81.96 Aligned_cols=275 Identities=16% Similarity=0.224 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhhCCCCCeE--EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 140 LENVLAEMVISAVPSIEMV--RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 140 ~~~~la~~l~~~~~~~e~v--~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
...++-..+++++ +.|-+ -+..+++.+-++++...|...++++.++...+-|..+...+...... .+
T Consensus 111 ~lfe~Qs~i~eLT-GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~---------~g- 179 (429)
T PF02347_consen 111 ALFEYQSMICELT-GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP---------LG- 179 (429)
T ss_dssp HHHHHHHHHHHHH-TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH---------CC-
T ss_pred HHHHHHHHHHHhh-CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh---------CC-
Confidence 3457778888887 56543 45566776666655444444343345555667777666554432210 01
Q ss_pred CCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc----cCc-
Q 011856 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM----TGF- 292 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~----~g~- 292 (476)
.+++.++.++-.... .+++++|++..++ .-|.+.. +++|.++++++|+++|+ -+- .++
T Consensus 180 -----~~iv~~~~~~~~~~d------~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~ 242 (429)
T PF02347_consen 180 -----IEIVEVPLDEDGTTD------DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLK 242 (429)
T ss_dssp -----EEEEEE-BBTTCSB-------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC-
T ss_pred -----eEEEEecccccCCcc------ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcC
Confidence 124444432210000 3578888886554 3577776 99999999999999886 322 222
Q ss_pred cccccchhhccCCCCchhh-hhhhc----C-CCCcEEEEEecHHHHHhhcC----------CCCcc--------------
Q 011856 293 RLAYGGAQEYFGVTPDLTT-LGKII----G-GGLPVGAYGGRRDIMEMVAP----------AGPMY-------------- 342 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t-~sK~l----g-~G~~iG~~~~~~~i~~~l~~----------~~~~~-------------- 342 (476)
++|. +| .||++ .+|.| + ||--.|++.++++++..+-- ..+.+
T Consensus 243 ~Pge------~G--ADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrRe 314 (429)
T PF02347_consen 243 SPGE------YG--ADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRRE 314 (429)
T ss_dssp -GGG------GT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGC
T ss_pred Chhh------cC--ccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeecccccccccccc
Confidence 3333 23 36652 34544 4 34458888889887766521 11110
Q ss_pred -ccCCCCCcHHHHH-HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCch
Q 011856 343 -QAGTLSGNPLAMT-AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 343 -~~~t~~~~~~~~a-aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
-.+..+.|...++ ++...+..+.. .++-++...+..|+.++|.+. ...++. + ..|+-+.+..
T Consensus 315 KAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~~----~-~~f~e~v~~~------- 381 (429)
T PF02347_consen 315 KATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPFD----N-PFFFEFVVVF------- 381 (429)
T ss_dssp CSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECSS----S-SSBSSEEEEE-------
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccC----C-CCceeeeeec-------
Confidence 1233444544433 22222333322 456677778888888888775 222211 1 1111111111
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHH
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAA 467 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l 467 (476)
..+ ....++.+.+...|+.........+.++ =.+|++|||.++++|
T Consensus 382 ---~~~-~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 382 ---SKD-KEVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ---SS--HHHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ---CCc-HHHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 111 2333466666666766554444444443 467899999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=90.62 Aligned_cols=223 Identities=19% Similarity=0.270 Sum_probs=53.9
Q ss_pred ccCCCC--cHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 111 AIIGHA--DDQVLAALGETMKKGTSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 111 ~~lG~~--~p~v~~a~~~~l~~~~~~~~------~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
.+||-+ ++++.+++.+.+......-+ -..-...+.+.++..+ +.|..+++|+...|+..++. .+..++
T Consensus 11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt-gAeaA~VvNnnaAAv~L~l~---~la~~~ 86 (367)
T PF03841_consen 11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT-GAEAALVVNNNAAAVLLALN---TLAKGK 86 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc---cccccc
Confidence 356763 67888888776654221111 0111233445555555 88999999999999988887 444455
Q ss_pred eEEEEeCC---CCCC--chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCCCCeEEEE-Ec
Q 011856 183 RIIKFEGC---YHGH--ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAII-LE 253 (476)
Q Consensus 183 ~ii~~~~~---yhg~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi-~e 253 (476)
+||+..+- +-|. ....+..+|... +.+-. ..+++.+++|.+ ++++++ +-
T Consensus 87 EvIvsRGelVeiGgsFRip~vm~~sGa~l-------------------vEVGttN~t~~~Dye~AI~e---~Ta~ll~Vh 144 (367)
T PF03841_consen 87 EVIVSRGELVEIGGSFRIPDVMRQSGARL-------------------VEVGTTNRTHLSDYEKAITE---NTAALLKVH 144 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-------------------cccccccccccccccccccc---ccccccccc
Confidence 56654332 1111 112222222211 11111 136778888874 566654 33
Q ss_pred c-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc---c---ccchhhccCCCCchhhhh--hhcCCCCcEE
Q 011856 254 P-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL---A---YGGAQEYFGVTPDLTTLG--KIIGGGLPVG 323 (476)
Q Consensus 254 p-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~---g---~~~~~~~~g~~pDi~t~s--K~lg~G~~iG 323 (476)
+ ++...|....+ . ++++.+++++|++++|+|-.-..+ .. | ..-..+....-.|++||| |.+|| -..|
T Consensus 145 ~Sn~~i~GFt~~~-~-~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQaG 221 (367)
T PF03841_consen 145 TSNFRIQGFTGEV-S-LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQAG 221 (367)
T ss_dssp ------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-E
T ss_pred ccccccccccccc-c-HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CCeE
Confidence 2 33333333222 1 899999999999999999655222 11 1 111223344457999998 88875 3478
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
.++|++++++.+++. -..-.+-.+-+..++..++|+.+.
T Consensus 222 iI~Gkk~lI~~lk~~---pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 222 IIVGKKELIEKLKKH---PLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp EEEEEHHHHHHHHHH---HHTTT-B--HHHHHHHHHHHHH--
T ss_pred EEEeCHHHHHHHhhC---CCcceEeeCHHHHHHHHHHHHHHH
Confidence 889999999998731 122234557788888888888654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-05 Score=76.47 Aligned_cols=304 Identities=17% Similarity=0.227 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (476)
++-.+|.+.|++.. +.|.+.| -|||.++-.+-++..|+|. +.+.|....-+-||.........|..+......
T Consensus 582 ~lf~~Le~~Lc~iT-G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~ 660 (1001)
T KOG2040|consen 582 QLFTELEKDLCEIT-GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCD 660 (1001)
T ss_pred HHHHHHHHHhheee-cccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeecc
Confidence 44457788888877 7787766 5788888888888777772 456777778899998877777777766543322
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc----
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV---- 288 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv---- 288 (476)
....+ |+.+|++.-+++.++.+++.+.-. ++-|...+ + +++++++.++||--+..|-+
T Consensus 661 ~~G~i--------------d~~dLk~kaekh~~~Laa~MvTYP-ST~GvfE~--~-i~d~cd~iHehGGQVYlDGANMNA 722 (1001)
T KOG2040|consen 661 ANGNI--------------DMVDLKAKAEKHKDNLAALMVTYP-STHGVFEE--G-IDDICDIIHEHGGQVYLDGANMNA 722 (1001)
T ss_pred CCCCc--------------cHHHHHHHHHHhhhhhheeEEecc-cccccccc--c-HHHHHHHHHhcCCEEEecCCCccc
Confidence 22222 899999999888888888776543 33454433 3 89999999999999999965
Q ss_pred ccCc-cccccch-hhccCCCCchhhhhhhcCC-CCcEEEEEecHHHHHhhcCCCCcc---------ccCCCC----CcHH
Q 011856 289 MTGF-RLAYGGA-QEYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMY---------QAGTLS----GNPL 352 (476)
Q Consensus 289 ~~g~-r~g~~~~-~~~~g~~pDi~t~sK~lg~-G~~iG~~~~~~~i~~~l~~~~~~~---------~~~t~~----~~~~ 352 (476)
|.|+ |.|..++ ..|+++. -||.=--|| |-.+|-+.+++.+...+- ..+.. -.++.+ ++..
T Consensus 723 qVGlc~pGd~GaDV~HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP-~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ 798 (1001)
T KOG2040|consen 723 QVGLCRPGDIGADVCHLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLP-SHPVVSPGRPEDTSPVGSVSAAPWGSAL 798 (1001)
T ss_pred eecccCCccccccceeeccc---ceeeecCCCCCCCCCccchhhhccccCC-CCCccCCCCCCCCCCccceeccCCCcce
Confidence 4677 7665432 1122211 022222343 344666666666655442 11111 011222 2333
Q ss_pred HHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHH
Q 011856 353 AMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (476)
Q Consensus 353 ~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (476)
......+.++.+....+ -+-.--+..|+.++|+.. +.+. .++.-..+.-+|-- +.++.+.....++..
T Consensus 799 ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h---Ykil--~~~~~~~vaHEFIl----D~r~fK~~agieavD 869 (1001)
T KOG2040|consen 799 ILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH---YKIL--FRGENGLVAHEFIL----DLRPFKKTAGIEAVD 869 (1001)
T ss_pred eehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc---ccee--EecCCcceeeeeee----echhhccccCCcHHH
Confidence 33444566666654333 333445677888888764 3322 12222244444421 111222222234567
Q ss_pred HHHHHHHCCeEeccCCCc---ceEE-e-CCCcHHHHHHHHHHHHHHHHHh
Q 011856 430 FYRGMLEEGVYFAPSQFE---AGFT-S-LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 430 ~~~~l~~~Gv~~~~~~~~---~~~~-~-~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.|.+-|+..-....+ .+.+ + -.-+.+++|++++++-.+-+++
T Consensus 870 vAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 870 VAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred HHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 889999999875443322 2333 2 2336689999999987665443
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=75.98 Aligned_cols=305 Identities=14% Similarity=0.133 Sum_probs=156.5
Q ss_pred HHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHHHhc--cC--------CceEEEE-eCCCCCCchhHHhhcCCCCcc
Q 011856 142 NVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAF--TG--------RERIIKF-EGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 142 ~~la~~l~~~~~~-~-e~v~~~~sGseA~~~al~~ar~~--~~--------~~~ii~~-~~~yhg~~~~~~~~~g~~~~~ 208 (476)
.++-.++.+..+. . .+-+|++||+-+|+.++..||.- .+ =...|.| ..--|=+...+....|.+.
T Consensus 144 ~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gt-- 221 (510)
T KOG0629|consen 144 EEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGT-- 221 (510)
T ss_pred HHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCC--
Confidence 4444455555542 2 37789999999999999998742 11 1234444 3334444433333333221
Q ss_pred CCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcCCCC--eEEEEEcccCCC--CCcccCCHHHHHHHHHHHHHh
Q 011856 209 LGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGE--IAAIILEPVVGN--SGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~--~a~vi~ep~~~~--~G~i~~~~~~l~~l~~l~~~~ 279 (476)
.+++.++-+ ++++||+.|.+...+ +.. +++..-++ -|...| |+.|.++|++|
T Consensus 222 --------------d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf-~vnaTaGTTV~GAFDd----L~~iadiC~k~ 282 (510)
T KOG0629|consen 222 --------------DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPF-FVNATAGTTVLGAFDD----LNGIADICEKH 282 (510)
T ss_pred --------------ceeEEecccccCccchHHHHHHHHHHHhcCCCCe-EEEecCCceeeeccCc----HHHHHHHHHhc
Confidence 123333332 589999888643222 223 33333332 566777 99999999999
Q ss_pred CCEEEEeccccC-c-cccccchhhccCCC-Cchhhh--hhhcCCCCcEEEEEecHH-HHHhhcC--------CCCccccC
Q 011856 280 GALLIFDEVMTG-F-RLAYGGAQEYFGVT-PDLTTL--GKIIGGGLPVGAYGGRRD-IMEMVAP--------AGPMYQAG 345 (476)
Q Consensus 280 g~llI~DEv~~g-~-r~g~~~~~~~~g~~-pDi~t~--sK~lg~G~~iG~~~~~~~-i~~~l~~--------~~~~~~~~ 345 (476)
++++.+|-+..| + -.-.. -+...|+. .|-++. -|-+|..++.++.+.+.+ +++.-.+ ..+.+..+
T Consensus 283 ~lWmHvDAAwGGglLmS~k~-R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS 361 (510)
T KOG0629|consen 283 KLWMHVDAAWGGGLLMSRKH-RHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVS 361 (510)
T ss_pred CEEEEeecccccccccChhh-HhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecc
Confidence 999999999965 3 11111 11223443 355554 488988889998887765 3333221 11111111
Q ss_pred CCCCcHHHHHHHH------HH--HHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec--CC
Q 011856 346 TLSGNPLAMTAGI------HT--LKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE--GP 412 (476)
Q Consensus 346 t~~~~~~~~aaa~------aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~--~~ 412 (476)
--.++- +..-+. -. ++.-.. +..++++-++.+||.++|++..... ...+ ...-..-+.|.. +.
T Consensus 362 ~DTgdK-~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~-~l~~--~~pe~~nv~fw~vp~~ 437 (510)
T KOG0629|consen 362 YDTGDK-AIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFE-MLFE--LEPEHVNVCFWYVPPS 437 (510)
T ss_pred cccccc-hhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccce-ehhc--CCCceEEEeeccCchH
Confidence 101111 111110 01 111111 4556777888999999998753211 1111 111122222211 11
Q ss_pred CcCchhhcccch---HHHHHHHHHHHHCCeEe---ccCCC--cceEE---eCCCcHHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSET---TKFARFYRGMLEEGVYF---APSQF--EAGFT---SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 413 ~~~~~~~~~~~~---~~~~~~~~~l~~~Gv~~---~~~~~--~~~~~---~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.+........+. ..+-.+-..|.++|... .|.+. +.+|+ +.+.+++|+|.+++.|++.-+
T Consensus 438 lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq 508 (510)
T KOG0629|consen 438 LRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ 508 (510)
T ss_pred hccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence 111111000000 11223456778888543 23321 22333 467799999999999887643
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00018 Score=78.02 Aligned_cols=272 Identities=10% Similarity=0.103 Sum_probs=146.1
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccC-CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCC
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (476)
..++-..++++++ +..++-+..+++.+.++++...|.-.+ +++|++. ..-|..+...+..... ..|+
T Consensus 111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~-~~~hP~~~~v~~t~a~---------~~g~- 179 (939)
T TIGR00461 111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVA-KDLHPQTKSVLHTRAK---------PFGI- 179 (939)
T ss_pred HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEEC-CCCCcchHHHHHHHHH---------hcCc-
Confidence 3467777888874 333667778888887765553322222 3555554 4555554433321110 0111
Q ss_pred CCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc---Cc-c
Q 011856 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT---GF-R 293 (476)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~---g~-r 293 (476)
+++.+ |+++|++.+ +++++++ .| +..|.+.. +++|.++++++|++++++--.. .+ +
T Consensus 180 -----~v~~~---~~~~l~~~~-----~~~~v~~q~P--n~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~ 240 (939)
T TIGR00461 180 -----EVIVV---DCSDIKKAV-----DVFGCLLQYP--ATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTP 240 (939)
T ss_pred -----EEEEE---cHHHHhhcC-----CEEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCC
Confidence 23333 455555444 3565555 44 34677776 9999999999999999865442 22 3
Q ss_pred ccccchhhccCCCCchhh-hhhhc----C-CCCcEEEEEecHHHHHhhcCC----------CCccc--------------
Q 011856 294 LAYGGAQEYFGVTPDLTT-LGKII----G-GGLPVGAYGGRRDIMEMVAPA----------GPMYQ-------------- 343 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~t-~sK~l----g-~G~~iG~~~~~~~i~~~l~~~----------~~~~~-------------- 343 (476)
.|.++ .||++ .+|.| + ||--.|++.+++++.+.+-.. .+.+.
T Consensus 241 Pge~G--------aDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRek 312 (939)
T TIGR00461 241 PGHYG--------ADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDK 312 (939)
T ss_pred HHHcC--------CcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccc
Confidence 33332 36652 33444 3 344488888888877665310 00000
Q ss_pred -cCCCCCcHHHHH-HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchh
Q 011856 344 -AGTLSGNPLAMT-AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 418 (476)
Q Consensus 344 -~~t~~~~~~~~a-aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~ 418 (476)
.+..+.+...++ .+...+..+.. .++-+++..+..++.++|.+.+.+. .. ...|--+.+..+
T Consensus 313 AtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~--~~----~~fF~~~~v~~~------- 379 (939)
T TIGR00461 313 ATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHEL--IN----KTWFDTLTVKVG------- 379 (939)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cC----CCccceEEEEeC-------
Confidence 111122222222 11111233332 2345566677778888887743221 11 111111222110
Q ss_pred hcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 419 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
.....++.+.++++||.++....+.+.+ .-.+|++||+.+++.|.
T Consensus 380 -----~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 380 -----NGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -----CCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 0113678899999999988654444554 46789999999999984
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=73.29 Aligned_cols=277 Identities=18% Similarity=0.181 Sum_probs=142.2
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcC-CCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
-+-|||.|+..+......+-.+..|.+..+.+-.+. ......| ..+...++-+.. ...+ |++.+-.
T Consensus 104 QslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~-~if~~aGf~tv~~Y~yWd~~---------~k~~---d~e~~Ls 170 (410)
T KOG1412|consen 104 QSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHH-AIFEKAGFTTVATYPYWDAE---------NKCV---DLEGFLS 170 (410)
T ss_pred eeccccchhhhhHHHHHHhcccceeEecCCchhHHH-HHHHHcCCceeeeeeeecCC---------Ccee---cHHHHHH
Confidence 456899999888875444445555666566554433 3333333 112111111110 0111 6777777
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc----ccchhhcc---CCCCchh-
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA----YGGAQEYF---GVTPDLT- 310 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g----~~~~~~~~---g~~pDi~- 310 (476)
.|+..++....++.-.-++++| +.|+.|-+..|.++-++.+.+-++|-+|-||-.| ..|+..+| |. +=++
T Consensus 171 dl~~APe~si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~-e~fv~ 248 (410)
T KOG1412|consen 171 DLESAPEGSIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGF-ELFVC 248 (410)
T ss_pred HHhhCCCCcEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCC-eEEEE
Confidence 7776543332333333355555 5677777999999999999999999999999333 23444332 21 1123
Q ss_pred -hhhhhcC-CCCcEEEE--Ee-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH-----------HHHH
Q 011856 311 -TLGKIIG-GGLPVGAY--GG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY-----------EYLN 374 (476)
Q Consensus 311 -t~sK~lg-~G~~iG~~--~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~-----------~~~~ 374 (476)
+|+|-+| -|=|+|.+ ++ ++..+..+...-.....++++ ||++.-|-+ +-+.+..++++ .++.
T Consensus 249 QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~S-NPPAyGArI-V~kvL~tP~lre~W~~sik~MssRI~ 326 (410)
T KOG1412|consen 249 QSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS-NPPAYGARI-VHKVLSTPELREQWIQSIKTMSSRIK 326 (410)
T ss_pred hhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccC-CCcchhhHH-HHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 6999998 46788876 33 455554443211122344555 333333222 22334333332 3344
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeC
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL 453 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~ 453 (476)
+++..|++.|..+.. .+-...+...-+|+.+. .- ...-++.|. .+.|++.+.| .+.+ .
T Consensus 327 ~MR~aLrd~L~aL~T-PGtWDHI~~QiGMFSyT--GL---------------tp~qV~~li~~h~vyLl~~G--RIni-s 385 (410)
T KOG1412|consen 327 KMRTALRDHLVALKT-PGTWDHITQQIGMFSYT--GL---------------TPAQVDHLIENHKVYLLSDG--RINI-S 385 (410)
T ss_pred HHHHHHHHHHHhcCC-CCcHHHHHhhccceeec--CC---------------CHHHHHHHHHhceEEEecCC--cEee-e
Confidence 444444555544421 12222222222233322 10 012344555 5578877764 2333 2
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+...+|....+++++++.+
T Consensus 386 GLN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 386 GLNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred ccccccHHHHHHHHHHHHHhh
Confidence 345566777777777777654
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00024 Score=67.00 Aligned_cols=315 Identities=16% Similarity=0.104 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh---ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA---FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~---~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
+.....|++.+.+.+ +.+.++.+.-|-.|=...+...+. .-++.+.+++.+.|+-.+.+-....|.-+.....+..
T Consensus 78 srs~~~L~~avkdif-Gfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea 156 (471)
T COG3033 78 SRSYYALADAVKDIF-GFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEA 156 (471)
T ss_pred cccHHHHHHHHHHhc-CceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCcccccccccc
Confidence 444567888888888 678888888766554443333222 2233566666665555555555555543322211111
Q ss_pred CCCCCCCCCceeeccCC---CHHHHHHHHhcCC-CCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 215 PGVPKGATYETLTAPFN---DVSALENLFENNK-GEIAAIILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~-~~~a~vi~e-p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
....+..|+. |++.|+++|++-+ +++..|++. .+|+.+|.-..-+. ++++++||++||+.++.|-+.
T Consensus 157 -------~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n-~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 157 -------FDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMAN-MKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred -------ccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHh-HHHHHHHHHHcCCcEEeehhh
Confidence 1112233332 8999999998744 345554443 33444665544444 999999999999999999766
Q ss_pred c----Cc---cc-cc-cchhhc-----cCCCCchhhhh-hhcCCC-CcEEEE-EecHH----HHHhhcCCCC-ccccCCC
Q 011856 290 T----GF---RL-AY-GGAQEY-----FGVTPDLTTLG-KIIGGG-LPVGAY-GGRRD----IMEMVAPAGP-MYQAGTL 347 (476)
Q Consensus 290 ~----g~---r~-g~-~~~~~~-----~g~~pDi~t~s-K~lg~G-~~iG~~-~~~~~----i~~~l~~~~~-~~~~~t~ 347 (476)
. -| |. |+ .+..+. +. ..|-.++| |- -| ..+|.+ +.+++ +.+.++...- ..-+.||
T Consensus 229 faENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~KK--D~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tY 305 (471)
T COG3033 229 FAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSAKK--DGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTY 305 (471)
T ss_pred hhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeeccc--cceeccccEEEecCccHHHHHHHHHhheEeecccccc
Confidence 2 12 11 11 111110 00 11222333 21 13 256666 44554 4444432111 1112333
Q ss_pred CCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 348 SGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 348 ~~~-~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
++- --.+.+....|...-+.+++++--+..+||.++|.+. +++..-+..|.-..++... +.+....+.--
T Consensus 306 Ggl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~----GVpi~~paGGHavfvda~~-----~lphip~eqFp 376 (471)
T COG3033 306 GGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA----GVPIVQPAGGHAVFVDAGK-----FLPHIPAEQFP 376 (471)
T ss_pred CcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc----CCeeEecCCCceEEeehhh-----hcCCCChhhCc
Confidence 321 1122222223433334677777777888999998875 3433333334333333211 11111111111
Q ss_pred HHHHHHHH-HHCCeEeccCC-----------------CcceEE---eCCCcHHHHHHHHHHHHHHHHH
Q 011856 427 FARFYRGM-LEEGVYFAPSQ-----------------FEAGFT---SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 427 ~~~~~~~l-~~~Gv~~~~~~-----------------~~~~~~---~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++.++-.| ++.||-....+ ...+|+ ...-|.+++|..++.++++.+.
T Consensus 377 aqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 377 AQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred HHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 23444333 35566433211 012344 2466899999999999988753
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8e-05 Score=68.56 Aligned_cols=328 Identities=16% Similarity=0.112 Sum_probs=184.8
Q ss_pred ccCCCCcHHHHHHHHHHHHhcC---CCC---C--C-CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccC
Q 011856 111 AIIGHADDQVLAALGETMKKGT---SFG---A--P-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~---~~~---~--~-~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
|.||.-+....+.+.+.+++.. .++ + | ...-+-+-..++...+ ..+.|-++||=|--+...+.....-|.
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTe 153 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTE 153 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcc
Confidence 7899999999998888888731 111 1 1 0111223334444444 356788888766555554443222243
Q ss_pred -CceEEEEeCCCCCCchhHHhh---cCCCCccCC--CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 181 -RERIIKFEGCYHGHADPFLVK---AGSGVATLG--LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 181 -~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
|-+|+.-..+|...+...-.. .|..+.... +....| .+. -..+++-+.|++++++++.|+...
T Consensus 154 kR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG------Eet-----lRteDILd~IEkngDeiA~v~fSG 222 (465)
T KOG3846|consen 154 KRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG------EET-----LRTEDILDTIEKNGDEIALVCFSG 222 (465)
T ss_pred hhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc------ccc-----hhHHHHHHHHHhcCCeEEEEEeec
Confidence 445555555666554443322 232111000 000001 001 135777778888889999999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhh--hhhhcCCCC-cEEEEEecHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGL-PVGAYGGRRD 330 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t--~sK~lg~G~-~iG~~~~~~~ 330 (476)
++--+|.... +.+|-.--+..|+++-+|=+|. + |. ..-...+|+ |..| -=|.+.+|- .||.+...+.
T Consensus 223 vqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-v--gNVpL~LHdWgV--DFACWCSYKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 223 VQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-V--GNVPLQLHDWGV--DFACWCSYKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred ceeecccccc----hhhhhhcccCCCcEechhhhhh-h--cCCceEEeecCC--ceEEEeeecccccCCCccceeeeehh
Confidence 9988998888 7777766677799999998884 2 11 111123454 5554 447766442 4666655443
Q ss_pred HHHhhcCC----------CC-----------ccccCCCCCcH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 331 IMEMVAPA----------GP-----------MYQAGTLSGNP-LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 331 i~~~l~~~----------~~-----------~~~~~t~~~~~-~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
......++ .+ ...+.-.+.+| +..+|....|+...+-. .+.++++.-+|..-|+.+.
T Consensus 294 h~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTgYleyL~ 372 (465)
T KOG3846|consen 294 HTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTGYLEYLL 372 (465)
T ss_pred hhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHhHHHHHH
Confidence 32221110 00 11111223333 34445556677665422 4556665555544444432
Q ss_pred h-----hcCC-----------ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 389 K-----KAGH-----------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 389 ~-----~~~~-----------~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
+ +++. +..+...|.-+.+.|..+. ..+.+.|.++|+.+.....+.+|+
T Consensus 373 k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~---------------~~vfqeL~krGv~~DkR~PNvIRvA 437 (465)
T KOG3846|consen 373 KASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPT---------------PKVFQELHKRGVIGDKRRPNVIRVA 437 (465)
T ss_pred HHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCc---------------hHHHHHHHHcCeeccccCCCceEee
Confidence 2 1111 1223345666666654321 467899999999988777777776
Q ss_pred --eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 --SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 --~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++..+-.|+-.++..|.+++..+
T Consensus 438 PvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 438 PVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred cchhhccHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999988653
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-05 Score=72.03 Aligned_cols=301 Identities=13% Similarity=0.054 Sum_probs=149.1
Q ss_pred HHHHHHHHhhCC--CCCeEEEeCCHHHHHHH-HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCC
Q 011856 142 NVLAEMVISAVP--SIEMVRFVNSGTEACMG-VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (476)
Q Consensus 142 ~~la~~l~~~~~--~~e~v~~~~sGseA~~~-al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (476)
..|..-+.+..+ +...++..+-.|--... .+...| ...+.+.+++..--|-+..-++...|..+..++...
T Consensus 59 n~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~-~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~----- 132 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR-MRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVL----- 132 (389)
T ss_dssp HHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH-HHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEE-----
T ss_pred HHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh-cccCCceEEEeeccccchHHHHHhcCCeEEEeeccC-----
Confidence 344444445554 35667777654433222 222222 234455555555555555555555565433221100
Q ss_pred CCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
..+.+.. |.+.+|+.+++.+++..+.++.......+..+ +-+++|.++|++||++.|+.-+|+ + ..-..
T Consensus 133 ---~~d~l~t---d~~~ie~~i~~~G~~~iLcvltttscfapr~~---D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~ 202 (389)
T PF05889_consen 133 ---EGDELIT---DLEAIEAKIEELGADNILCVLTTTSCFAPRLP---DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCM 202 (389)
T ss_dssp ---ETTEEEE---HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHH
T ss_pred ---CCCeeec---cHHHHHHHHHHhCCCCeEEEEEecCccCCCCC---ccHHHHHHHHHHcCCceEEccchh-hhHHHHH
Confidence 0111111 68889999976554544444444433333332 238999999999999999999994 3 11000
Q ss_pred c-hh--hccCCCCc-hhhhhhhcCCCCcEEEEE-ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCH
Q 011856 298 G-AQ--EYFGVTPD-LTTLGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGT 369 (476)
Q Consensus 298 ~-~~--~~~g~~pD-i~t~sK~lg~G~~iG~~~-~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~ 369 (476)
- .. ...|..|- +-++.|-|--+...+-+. ..+..++.+.+. +-+-. +.+|. .- ...+|..+.. ..+
T Consensus 203 ~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~---YpGRa-s~sp~-ld-~~itLl~LG~~g~~~l 276 (389)
T PF05889_consen 203 HLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKE---YPGRA-SASPS-LD-LFITLLSLGCTGYGAL 276 (389)
T ss_dssp HHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHT---SHSHB-TSHHH-HH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHH---hhhhh-hcccc-hH-HHHHHHHHhhhHHHHH
Confidence 0 00 12344433 236778775221122232 345677766531 11111 11221 12 2223333322 556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE----eccC
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY----FAPS 444 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----~~~~ 444 (476)
+....+.-.+++++|+++..+++. ..+.+.....+.+++..-. . . .. .....|...|..+||. +.+.
T Consensus 277 l~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~--~---~--~~-k~~~~lgs~Lf~R~VsG~RvV~~~ 348 (389)
T PF05889_consen 277 LKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLY--E---I--SQ-KDGTFLGSMLFKRGVSGIRVVTPG 348 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCC--T---C--CS-SHHHHHHHHHHHTTEESSEEEETS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccch--h---h--cc-chhhhHHHHHHhCCcccceeeccC
Confidence 777788888999999998877762 2233344445566553211 0 0 01 2235677888899764 2222
Q ss_pred C---------C--cceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 445 Q---------F--EAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 445 ~---------~--~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+ + +++.+ .+..++||+|.++++|+++++
T Consensus 349 ~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 349 GKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 1 22333 367899999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00045 Score=67.48 Aligned_cols=335 Identities=16% Similarity=0.139 Sum_probs=173.0
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCe--EEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-----~~~~~~~~~~~~la~~l~~~~~~~e~--v~~~~sGseA~ 168 (476)
.||+.-+..+++. .+.+ +++..+-+.+.+.+. .-|......+.+.-..++..+.+.+. =.-|.||||+.
T Consensus 76 ld~~~~~~~vS~~--v~~~--~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~ 151 (491)
T KOG1383|consen 76 LDGNPRLGLASGV--VYWG--EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG 151 (491)
T ss_pred cCCCcccCeeeEE--EecC--CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence 4555333333332 4444 455555455555442 12344567788888888888864332 24577899998
Q ss_pred HHHHHHHHhccC------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 169 MGVLRLARAFTG------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 169 ~~al~~ar~~~~------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
.++.+.-|.... +..++.. ...|...+.+...-+..... +|..++ .+.+ |+..+.+.+.+
T Consensus 152 l~~~k~~~~~r~~~k~I~~p~iv~~-~~v~~a~eK~a~yf~v~l~~--V~~~~~--------~~~~---D~~k~~~~i~e 217 (491)
T KOG1383|consen 152 LAAKKSYRNRRKAQKGIDKPNIVTP-QNVHAAFEKAARYFEVELRE--VPLDEG--------DYRV---DPGKVVRMIDE 217 (491)
T ss_pred HHHHHHHHHHHHhccCCCCccccch-HHHHHHHHHHHhhEEEEEEe--eecccc--------ceEe---cHHHHHHHhcc
Confidence 887774432211 2223332 12222222111111110001 111111 1111 78888888875
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-cccccchhhccCCC-C---chhhhh-h-
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF-RLAYGGAQEYFGVT-P---DLTTLG-K- 314 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~-r~g~~~~~~~~g~~-p---Di~t~s-K- 314 (476)
++.+++.+-.+-+.|.+.+ .++|.++.-+ +++.+.+|-.-.|| -.........||+. | .+.+-+ |
T Consensus 218 ---Nti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKY 290 (491)
T KOG1383|consen 218 ---NTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKY 290 (491)
T ss_pred ---ceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeecccee
Confidence 6788887777767788888 9999999988 99999999999998 54111122234442 2 222333 2
Q ss_pred hcC-CCCcEEEEEec-HHH-HHhhcC----CCCccccCCCCCcH--HHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH
Q 011856 315 IIG-GGLPVGAYGGR-RDI-MEMVAP----AGPMYQAGTLSGNP--LAMTAGIHTLKRLKEP---GTYEYLNKITGELTQ 382 (476)
Q Consensus 315 ~lg-~G~~iG~~~~~-~~i-~~~l~~----~~~~~~~~t~~~~~--~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~ 382 (476)
+|. .| +||++-+ +++ .+++.- .+..+-..|.+++- ...+++.+++-.+..+ +..+++.+....+++
T Consensus 291 Gl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~e 368 (491)
T KOG1383|consen 291 GLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLRE 368 (491)
T ss_pred eeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 6777443 332 222221 01122222333321 2233344444334333 344566677778888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---ceEEeCCCcHHH
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---AGFTSLAHSSDD 459 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~~~~~~t~e~ 459 (476)
+++++. ... +-+...+ .+...+.. ...--++...|.+.|-.+..-..+ ++++...+.+++
T Consensus 369 gie~i~-~i~----i~gkp~v-s~~~~~s~-----------~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~ 431 (491)
T KOG1383|consen 369 GIENIK-GIK----IVGKPLV-SFILFGSN-----------DVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHARED 431 (491)
T ss_pred hhhccc-cce----ecCCCcE-EEEEccCC-----------ccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHH
Confidence 887742 111 1122222 22222211 011246778899999877654433 234444555555
Q ss_pred -HHHHHHHHHHHHHHh
Q 011856 460 -IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 -i~~~~~~l~~~~~~~ 474 (476)
.|+++.-+++++.++
T Consensus 432 ~A~~~v~Di~~~~~el 447 (491)
T KOG1383|consen 432 VADRFVADIRKVVEEL 447 (491)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 688888888888765
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=66.50 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=102.7
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC-CCCc
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLP 321 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~ 321 (476)
...=+++.|+|+.|.... .+++.-+..+|.|=+|--= .+.-.. -..-||+ |+||.-| +|.|
T Consensus 138 ~~IElVTSPNNPDG~lr~----------~V~~g~~~k~I~D~AYYWPhyTpI~~-----~aD~DiMLFT~SK~TGHAGSR 202 (363)
T PF04864_consen 138 PYIELVTSPNNPDGQLRE----------AVLNGSSGKVIHDLAYYWPHYTPITA-----PADHDIMLFTLSKLTGHAGSR 202 (363)
T ss_dssp GEEEEEESS-TTT----------------SSTTTEEEEEEE-TT-STTTS---S------B--SEEEEEHHHHCS-GGG-
T ss_pred CeEEEEeCCCCCcccccc----------hhcCCCCcceeeeeeeecccccccCC-----CCCCceEEEEEecccCccccc
Confidence 455577788766543221 2234455667999888410 111111 1123655 8999999 8999
Q ss_pred EEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 322 VGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--------PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 322 iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--------~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+||.+.++ ++.+.+. .+...+|.+.+-=+|.-++..|+.+.+ .++.+.-.+..+.--++|+++.....
T Consensus 203 ~GWAlVKD~~Va~kM~---~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~ 279 (363)
T PF04864_consen 203 FGWALVKDEEVAKKMT---KYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK 279 (363)
T ss_dssp EEEEEES-HHHHHHHH---HHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred cceeeecCHHHHHHHH---HHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99997765 4555554 344566778777777777766665432 13444333333333334444433221
Q ss_pred C-------------ceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeC
Q 011856 393 H-------------AICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSL 453 (476)
Q Consensus 393 ~-------------~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~ 453 (476)
. ...+ .....+.|+....+.. ......|++.||+.+.+. ...+|+++
T Consensus 280 rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed--------------~DC~~~l~~~~I~tr~G~~fga~~ryVRlSm 345 (363)
T PF04864_consen 280 RFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED--------------EDCYAVLREAKIITRSGVLFGADSRYVRLSM 345 (363)
T ss_dssp SEEE---SCEEETTTTCEEE---SEEEEEESSCGG--------------SSHHHHHHCTTEEEEEGGGGTS-TTEEEEES
T ss_pred ceecCcCCchhccccccccCCCCCeEEEecCCccc--------------ccHHHHHHhCCcccCCCCccCCCCCeEEEec
Confidence 1 1112 2234555665532211 234567778899887662 34689999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 011856 454 AHSSDDIQHTITAAEKV 470 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~ 470 (476)
..++++.|.++++|...
T Consensus 346 l~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 346 LKRDDDFDQLLERLSKL 362 (363)
T ss_dssp SS-HHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0072 Score=65.58 Aligned_cols=268 Identities=15% Similarity=0.115 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHHHhccC--CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 141 ENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 141 ~~~la~~l~~~~~~~e--~v~~~~sGseA~~~al~~ar~~~~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
..++-..+++++ +.| +.-+...+|.+-|+++ +++.+++ ++++ +.+...|..+...+..... ..|
T Consensus 126 l~e~Qtmi~~Lt-Gm~vaNASl~D~atA~aEA~~-ma~~~~~~k~~~~-~v~~~~hP~~~~v~~t~~~---------~~g 193 (954)
T PRK12566 126 LLNFQQMTIDLT-GLDLANASLLDEATAAAEAMA-LAKRVAKSKSNRF-FVDEHCHPQTLSVLRTRAE---------GFG 193 (954)
T ss_pred HHHHHHHHHHHh-CchhhhhhhccchhHHHHHHH-HHHHHhhcCCCEE-EECCCCCHHHHHHHHHhhh---------cCC
Confidence 346667777777 444 4455556666666333 3434443 4454 4455666655544432111 111
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccc-cCc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVM-TGF 292 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~-~g~ 292 (476)
+ +++ .+++++.+. +++++|++ .|+ .-|.+.. +++|.++++++|+++|+ |=.- +.+
T Consensus 194 ~------~i~------~~~~~~~~~---~~~~~v~vq~P~--~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL~ll 252 (954)
T PRK12566 194 F------ELV------VDAVDNLAA---HAVFGALLQYPD--THGEIRD----LRPLIDQLHGQQALACVAADLLSLLVL 252 (954)
T ss_pred c------EEE------EcchhhcCC---CCEEEEEEECCC--CceEEcc----HHHHHHHHHHcCCEEEEEeCHHHHhCC
Confidence 1 111 133444443 26888877 443 3577765 89999999999998773 2222 222
Q ss_pred -cccccchhhccCCCCchh-----hhhhhcC-CCCcEEEEEecHHHHHhhcC----------CCCc--------------
Q 011856 293 -RLAYGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAP----------AGPM-------------- 341 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~-----t~sK~lg-~G~~iG~~~~~~~i~~~l~~----------~~~~-------------- 341 (476)
..|.++ .||+ .||=-++ ||--.|++.++++++..+-- ..+.
T Consensus 253 ~~Pge~G--------ADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRR 324 (954)
T PRK12566 253 TPPGELG--------ADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRR 324 (954)
T ss_pred CChhhcC--------CcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhh
Confidence 333332 3665 2444445 44458888888887766521 0000
Q ss_pred -cccCCCCCcHHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCc
Q 011856 342 -YQAGTLSGNPLAMTAGIHTLKRL-KEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 416 (476)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~-~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~ 416 (476)
.-.+..+.|...++...+..-.+ ..+ ++-+++..+..++.++|.+.+.+. . ....|--+.+...
T Consensus 325 eKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~--~----~~~fF~~~~v~~~----- 393 (954)
T PRK12566 325 EKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKR--L----NRHFFDTLTLEVG----- 393 (954)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCcc--c----cCCccceEEEEcc-----
Confidence 00122233333222222222122 212 334456667778888887743221 1 1111212222110
Q ss_pred hhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 417 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
. ...++.+..+++|+.++-.....+.++ =.+|++|++.++..|.
T Consensus 394 ------~--~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 394 ------G--AQAAIIESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred ------C--CHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 0 135677888899998887655556555 4678999999999883
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=56.46 Aligned_cols=322 Identities=17% Similarity=0.121 Sum_probs=154.9
Q ss_pred CcHHHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHH-----hhCC-CCCe--EE-EeCCHHHHHHHHHHHHHhcc
Q 011856 116 ADDQVLAALGETMKKGT-------SFGAPCLLENVLAEMVI-----SAVP-SIEM--VR-FVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~-------~~~~~~~~~~~la~~l~-----~~~~-~~e~--v~-~~~sGseA~~~al~~ar~~~ 179 (476)
.+..|.+|+-..+.+-. .|++-++...++ |.|+ +.+. +++. |- -.-||+-||.++-.. ...
T Consensus 52 ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~i-E~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYta--ll~ 128 (477)
T KOG2467|consen 52 TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQI-ELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTA--LLK 128 (477)
T ss_pred hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHH-HHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhh--hcC
Confidence 46788888888887622 222233333222 2222 3343 3322 22 234799999888773 234
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
+.++|.-.+-.--|+........+..+-. ..-.+..+|......+=. -|.|.||+..... +.+++|+-..- -
T Consensus 129 Ph~RiMGLDLP~GGHLsHGy~T~~kkISa-~SiyFeSmPYkv~~~TG~---IDYD~Le~~A~~f--rPk~iiaG~Sa--Y 200 (477)
T KOG2467|consen 129 PHERIMGLDLPSGGHLSHGYQTPTKKISA-TSIYFESMPYKVDPSTGY---IDYDKLEKTATLF--RPKLIIAGTSA--Y 200 (477)
T ss_pred CCCeeeeccCCCCCccccccccCCceeee-eeeecccCceeeCCCCCc---eehHHHHHHHHhc--CCcEEEecccc--c
Confidence 66777776543323211111111111000 000111111111111111 1677887766544 44555553211 1
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccc-cchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH---
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI--- 331 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~-~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i--- 331 (476)
-..+. ..+++++|++.|++|++|=+| +|+ -.+. ...+++ .||+ |.-|++-| -|.|-+.-++-+
T Consensus 201 ~R~~D----YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRG-PRg~mIFyRkGvk~~ 271 (477)
T KOG2467|consen 201 SRLID----YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRG-PRGAMIFYRKGVKSI 271 (477)
T ss_pred hhhcc----HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccC-CcceeEEEeccCCcC
Confidence 11223 789999999999999999999 777 4332 223343 3666 45688874 344444434321
Q ss_pred ------------HHhhcC-CCCccccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 332 ------------MEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 332 ------------~~~l~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
-+.+.. .-+..+++..+-...+.| .+|+....+ .+.+++.++.+.|.+.|.+.+.+. ..
T Consensus 272 ~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalA---vALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~l--vt 346 (477)
T KOG2467|consen 272 KPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALA---VALKQAMTPEFKEYQKQVLKNAKALASALISRGYKL--VT 346 (477)
T ss_pred CCCCCCcceechhhhhhhhccccccCCCCcchHHHHH---HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceE--ec
Confidence 111111 123445555443222222 345444443 456777788888888888764332 10
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH---HHCCeEeccC---CCcceEE------eCCCcHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM---LEEGVYFAPS---QFEAGFT------SLAHSSDDIQHT 463 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~Gv~~~~~---~~~~~~~------~~~~t~e~i~~~ 463 (476)
. ...-.++.+++....+ +....+.+.+.+ +.+.-..... .+..+|+ +-...++|.++.
T Consensus 347 g-GTDnHlvLvDLr~~G~---------dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v 416 (477)
T KOG2467|consen 347 G-GTDNHLVLVDLRPKGV---------DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKV 416 (477)
T ss_pred C-CccceEEEEeccccCC---------chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHH
Confidence 0 1123355666643211 223333333332 2222111100 1223565 224468888888
Q ss_pred HHHHHHHHH
Q 011856 464 ITAAEKVKM 472 (476)
Q Consensus 464 ~~~l~~~~~ 472 (476)
.+-|.++++
T Consensus 417 ~~fi~~av~ 425 (477)
T KOG2467|consen 417 ADFIDRAVK 425 (477)
T ss_pred HHHHHHHHH
Confidence 888877654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=64.53 Aligned_cols=207 Identities=19% Similarity=0.166 Sum_probs=110.7
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHhhC-----C--
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAV-----P-- 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~~~~~~~~la~~l~~~~-----~-- 153 (476)
|.-+.=|-|.|- |.+|+.|+ -|.|++|=.+.+.... --+.|-....++.+.-+++. |
T Consensus 52 ~~KiNLgvGaYR-dd~gKp~v--------------L~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~i 116 (427)
T KOG1411|consen 52 PKKINLGVGAYR-DDNGKPYV--------------LPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVI 116 (427)
T ss_pred cceeeeccccee-cCCCCeee--------------eHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhh
Confidence 556667788864 45666653 2556665443333211 11122222233333333322 1
Q ss_pred CCCeEEE--eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 154 SIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 154 ~~e~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
..+++.. +-|||-|+..+-.....+-...+|.+.++++-.+. ......|. .+..+.|-
T Consensus 117 k~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~-~if~~ag~-------------------~~~~yrYy 176 (427)
T KOG1411|consen 117 KEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK-NIFKDAGL-------------------PVKFYRYY 176 (427)
T ss_pred hccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccC-ccccccCc-------------------ceeeeeec
Confidence 1234443 56888888877765444555666777777653321 11111111 12122211
Q ss_pred -------CHHHHHHHHhcCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc----ch
Q 011856 232 -------DVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG----GA 299 (476)
Q Consensus 232 -------d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~----~~ 299 (476)
|.+.+-+-+.+.++.- .|++ ..-++++| +.|..+-+++|+++.++.+.+-++|-+|-||-.|.. ++
T Consensus 177 d~~t~gld~~g~ledl~~~p~gs-~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~a 254 (427)
T KOG1411|consen 177 DPKTRGLDFKGMLEDLGEAPEGS-IILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQA 254 (427)
T ss_pred cccccccchHHHHHHHhcCCCCc-EEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHH
Confidence 5555555555544332 3444 33344444 677888899999999999999999999999943321 12
Q ss_pred hhcc-CCCCchh---hhhhhcC-CCCcEEEE
Q 011856 300 QEYF-GVTPDLT---TLGKIIG-GGLPVGAY 325 (476)
Q Consensus 300 ~~~~-g~~pDi~---t~sK~lg-~G~~iG~~ 325 (476)
..+| ...-++. +++|-+| =|=|+|++
T Consensus 255 vR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 255 VRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred HHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 2122 1111222 6889998 47788887
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.011 Score=54.75 Aligned_cols=201 Identities=20% Similarity=0.240 Sum_probs=114.3
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
|..+|.+|.++.--. .+.||+.+..+..|.+-+++.+. .|..++ .-|||.|+..|+.- .+.+++..+.
T Consensus 36 Nq~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~-aE~a~VRpq~isGTHAI~~aLfg--~LRpgDell~ 112 (416)
T COG4100 36 NQKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFG-AEAALVRPQIISGTHAIACALFG--ILRPGDELLY 112 (416)
T ss_pred HHHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhc-cccceeeeeeecchhHHHHHHHh--ccCCCCeEEE
Confidence 445677776653211 13456666677888888888884 443332 24699999999973 3456677776
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
..+.-.-.....+-..|.+.-. +. ..++ ....+|. -|.+.++..++. ++++|.+--.-+-.-.
T Consensus 113 i~G~PYDTLeevIG~rg~~~gS--L~-dfgi------~Y~~v~Lt~~gkiD~~~v~~~i~~---~tkli~IQRS~GY~~R 180 (416)
T COG4100 113 ITGSPYDTLEEVIGLRGEGQGS--LK-DFGI------KYKAVPLTADGKIDIQAVKTAISD---RTKLIGIQRSKGYAWR 180 (416)
T ss_pred ecCCcchhHHHHhccCCCCccc--HH-HhCc------ceeecccccCCcccHHHHHHhcCc---cceEEEEEeccCcCCC
Confidence 6553222122222222211100 00 0010 0111111 178888888873 6888877554332211
Q ss_pred ccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCC--cEEEEEecHHHHHh
Q 011856 262 IAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL--PVGAYGGRRDIMEM 334 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~--~iG~~~~~~~i~~~ 334 (476)
-..+-..++++.++.++- ++++.+|..|..| -. .+...+-.|++ +|=|--|||+ -.||+.+++++++.
T Consensus 181 pS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~ 255 (416)
T COG4100 181 PSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA 255 (416)
T ss_pred CcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHHh
Confidence 111222366666666664 6889999999877 22 13334556877 6779999886 46777999999887
Q ss_pred hc
Q 011856 335 VA 336 (476)
Q Consensus 335 l~ 336 (476)
..
T Consensus 256 ~~ 257 (416)
T COG4100 256 AA 257 (416)
T ss_pred hc
Confidence 54
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.34 Score=46.59 Aligned_cols=198 Identities=19% Similarity=0.098 Sum_probs=107.8
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchhhhh--hhcC-CCCcE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTLG--KIIG-GGLPV 322 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~t~s--K~lg-~G~~i 322 (476)
.+-|...++....|+-.++.. .+... .++|+|-.-. + ++ ...++ .-|++.+| |.+| .| +
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p------~~~~~--~~~v~D~SS~-i-----ls-r~iDvsk~dviyagaQKnlGpaG--l 207 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELP------DIGSD--GLLVADASSA-I-----LS-RPIDVSKYDVIYAGAQKNLGPAG--L 207 (365)
T ss_pred ccEEEEecCCcccceEccCCC------CCCCC--ceEEEecccH-H-----hc-CCCChhHcceEEEehhhccCccc--e
Confidence 444666776666777665322 11112 7888884332 1 11 11122 12566554 9999 47 8
Q ss_pred EEEEecHHHHHhhcCC-CC--------ccccCCCCCcHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 323 GAYGGRRDIMEMVAPA-GP--------MYQAGTLSGNPLAM-TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~-~~--------~~~~~t~~~~~~~~-aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+.++.++++++.+... -+ ....++|+.+|..+ ....-+++.+....-++.+.++.+.-.+.|-+..++.+
T Consensus 208 tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 208 TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999998887542 11 22356666555433 34445667676643333333333333333433333333
Q ss_pred Cce---EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHH
Q 011856 393 HAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTIT 465 (476)
Q Consensus 393 ~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~ 465 (476)
+.. .-..+..| -+.|. ..+.+....|...+.++|+..-.+. .+.+|.+ -+...|+++.+++
T Consensus 288 fy~~~v~~~~RS~m-nV~f~-----------~~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~ 355 (365)
T COG1932 288 FYRNLVAKANRSRM-NVTFT-----------LVDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTD 355 (365)
T ss_pred ccccccchhhccce-eEEEE-----------cCcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHH
Confidence 211 11222333 22221 1234455778888888888765442 2235654 5678999999999
Q ss_pred HHHHHHHH
Q 011856 466 AAEKVKMR 473 (476)
Q Consensus 466 ~l~~~~~~ 473 (476)
-++++.++
T Consensus 356 fm~~f~~~ 363 (365)
T COG1932 356 FMDWFEET 363 (365)
T ss_pred HHHHHHHh
Confidence 99887654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=50.29 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=66.5
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCC-----------ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCC
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGR-----------ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 221 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~-----------~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 221 (476)
-++-.|++|++..++..||.- ..+ +-|+.+..--|.+..-+....+.+...++.....++
T Consensus 142 GviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~m---- 217 (511)
T KOG0628|consen 142 GVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGM---- 217 (511)
T ss_pred ceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCC----
Confidence 345567899999999887643 111 224444444454444333333332111111111111
Q ss_pred CCceeeccCCCHHHHHHHHhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 222 TYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 222 ~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
+.+.|++++++. .+-+..++ ..+.|++|...- +.|.+|..+|+++|++|.+|-+|.|
T Consensus 218 ----------r~~~L~~AIe~D~arGlIPf~v-~at~GTT~~ca~--D~l~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 218 ----------RGDTLRKAIEEDIARGLIPFFV-CATLGTTSSCAF--DELEELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred ----------CHHHHHHHHHHHHhCCCccEEE-EEeecCcccccc--ccHHHhcchhhhcCEEEEeehhhcc
Confidence 578888888752 12234444 444455554332 2299999999999999999999975
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.03 Score=47.90 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
+.+++++.+. .....+.+..++++++++++.+.++ .+++|++++|+++|++.+++. ....++.|++.++.|.
T Consensus 76 ~~i~~~~~~~-a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~--l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 76 EGTIDSFKDI-ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFC--IADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHH--HcCCCCEEEEeCCCCC
Confidence 4445555552 2222334567889999999988643 468999999999999999984 2345677888888886
Q ss_pred C
Q 011856 193 G 193 (476)
Q Consensus 193 g 193 (476)
|
T Consensus 153 ~ 153 (153)
T PLN02994 153 A 153 (153)
T ss_pred C
Confidence 5
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.4 Score=40.45 Aligned_cols=99 Identities=24% Similarity=0.246 Sum_probs=57.4
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc--cchhh-ccCCCC
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQE-YFGVTP 307 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~~-~~g~~p 307 (476)
|++++++.+++.+++-...|.... .-..+-.++-+++|..+|..|+++-|+..+| |+ .... ..+.. ..| ..
T Consensus 142 dleav~~~iee~g~dcilci~stt---scfapr~pd~leaiaaica~~diphivnnay-glqsee~i~~iaa~~~~g-ri 216 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTT---SCFAPRSPDNLEAIAAICAAHDIPHIVNNAY-GLQSEECIHKIAAAAECG-RI 216 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeecc---cccCCCCCchHHHHHHHHHccCchhhhcccc-ccchHHHHHHHHHHhhhc-cH
Confidence 789999999876555222222111 1222344556999999999999999999998 44 2111 11111 122 23
Q ss_pred chh--hhhhhcCCCCcEEEE-E--ecHHHHHhhcC
Q 011856 308 DLT--TLGKIIGGGLPVGAY-G--GRRDIMEMVAP 337 (476)
Q Consensus 308 Di~--t~sK~lg~G~~iG~~-~--~~~~i~~~l~~ 337 (476)
|.+ ++-|.|-- |+|.. + .+...++.+.+
T Consensus 217 da~vqsldknf~v--pvggaiia~fk~n~iq~iak 249 (432)
T KOG3843|consen 217 DAFVQSLDKNFMV--PVGGAIIAAFKDNFIQEIAK 249 (432)
T ss_pred HHHHHHhhhccee--ecchhHhhHhHHHHHHHHHH
Confidence 433 67787752 45443 2 25566666653
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.21 E-value=48 Score=34.92 Aligned_cols=109 Identities=11% Similarity=0.284 Sum_probs=60.0
Q ss_pred HHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCcee
Q 011856 148 VISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 226 (476)
Q Consensus 148 l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 226 (476)
++++.+ +..+.-+..-||.|-++..... ...++++ ++.+...|..+...+.....+ .++ .
T Consensus 172 i~dlTGL~~aNASLLDEgTAaaEAm~l~~-~~~krkk-~vvd~~~hpqtlsV~~TRa~~---------~~i------~-- 232 (1001)
T KOG2040|consen 172 ITDLTGLPMANASLLDEGTAAAEAMALCN-RINKRKK-FVVDSNCHPQTLSVVKTRAKG---------FGI------K-- 232 (1001)
T ss_pred hhhccCCcccchhhhccchhHHHHHHHHH-hhcccce-EEecCCCCcchhhhhhccccc---------cce------e--
Confidence 344443 3344555556777776655543 3345555 556677777666554332210 111 1
Q ss_pred eccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 227 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 227 ~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
+...|++..... .+++..+++--. ...|.+.+ ..++.++++++|.++++
T Consensus 233 -v~~~~~~~~~~s----~~~v~gvlvQYP-~t~G~i~d----~~el~~~a~~~~s~vv~ 281 (1001)
T KOG2040|consen 233 -VVVSDIKEADYS----SKDVSGVLVQYP-DTEGSVLD----FDELVELAHANGSLVVM 281 (1001)
T ss_pred -EEecCHHHhhcc----ccceeEEEEEcC-CCCCcccC----HHHHHHHhhccCceEEE
Confidence 111133332221 236777777543 34677888 88899999999988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 476 | ||||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 1e-179 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 1e-179 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 1e-178 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 1e-178 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-178 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-174 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 1e-134 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 1e-121 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-119 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 1e-119 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 1e-106 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-85 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 3e-46 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 5e-45 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 1e-42 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 3e-32 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 4e-32 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 4e-32 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-31 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 2e-30 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-24 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 7e-23 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 2e-22 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-20 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-20 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 6e-20 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 1e-19 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 3e-19 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 3e-19 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 3e-19 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 4e-19 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 4e-19 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-18 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-18 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 4e-18 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 3e-17 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 5e-17 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-16 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-15 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-15 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 4e-15 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 4e-15 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 5e-15 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 9e-15 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-14 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 2e-14 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 2e-14 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 4e-14 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 4e-14 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 5e-14 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 5e-14 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 5e-14 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 5e-14 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 7e-14 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 4e-12 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-12 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 7e-11 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 4e-10 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 1e-09 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-09 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 2e-09 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 9e-09 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 2e-08 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-07 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 8e-07 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 4e-06 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 6e-06 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 8e-06 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 1e-05 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 2e-05 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 1e-04 |
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 476 | |||
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 0.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 0.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 0.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 0.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 0.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 0.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 2e-67 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 1e-66 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 2e-66 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 3e-66 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 4e-64 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 6e-59 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 7e-57 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 7e-54 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 4e-53 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 8e-53 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 6e-52 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 2e-51 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 3e-51 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 3e-51 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 6e-48 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 4e-47 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 3e-44 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 2e-41 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 3e-41 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 3e-39 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 8e-39 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 9e-39 | |
| 3nui_A | 478 | Pyruvate transaminase; amino transferase, transfer | 5e-38 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 1e-37 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 3e-37 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 2e-36 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 3e-34 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 1e-33 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 1e-06 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 1e-06 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 1e-06 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 2e-06 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 3e-06 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 3e-05 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 4e-05 |
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 807 bits (2086), Expect = 0.0
Identities = 306/423 (72%), Positives = 357/423 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
V+TGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKV 470
V
Sbjct: 421 RTV 423
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 802 bits (2075), Expect = 0.0
Identities = 226/425 (53%), Positives = 295/425 (69%), Gaps = 1/425 (0%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVG 106
+ + KSE + A++L+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVG
Sbjct: 1 SNAMSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVG 60
Query: 107 SWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTE 166
SWGP I+GH + A+ E +++G SFGAP +E +A++V VP+++MVR VNSGTE
Sbjct: 61 SWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTE 120
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
A M +RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TL
Sbjct: 121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTL 180
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286
T +ND++++ FE E+A II+EPV GN I P P+FL +R + E GALLI D
Sbjct: 181 TCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID 240
Query: 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346
EVMTGFR+A GAQ+Y+ V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGT
Sbjct: 241 EVMTGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGT 300
Query: 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406
LSGNP+AM AG L + + G YE L ++T L G+ A K+ + ++ GMFG
Sbjct: 301 LSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGL 360
Query: 407 FFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTIT 465
FFT V ++D + +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+
Sbjct: 361 FFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVN 420
Query: 466 AAEKV 470
AA +
Sbjct: 421 AARRC 425
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 800 bits (2070), Expect = 0.0
Identities = 201/422 (47%), Positives = 284/422 (67%), Gaps = 1/422 (0%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KSE A E + GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++
Sbjct: 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAY 64
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA + A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA
Sbjct: 65 GPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +R+ARA+TGR +I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T
Sbjct: 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV 184
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
PFN+V L+ + E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV
Sbjct: 185 PFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+T FR YGGAQ+ GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++
Sbjct: 245 ITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMA 304
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNP +M +GI L+ L++ G YE L+++ L +GI++ K I + G +F
Sbjct: 305 GNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYF 364
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T + +++ A+ ++ F +F++ ML+EGV APS++EA F + H+ +DI++TI A
Sbjct: 365 TTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVG 424
Query: 469 KV 470
+
Sbjct: 425 RA 426
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 798 bits (2064), Expect = 0.0
Identities = 244/422 (57%), Positives = 299/422 (70%), Gaps = 1/422 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KS AF A++LMPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SW
Sbjct: 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSW 62
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA
Sbjct: 63 GPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT 122
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T
Sbjct: 123 MSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITV 182
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
+ND+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
MTGFR+AY Q Y+GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLS
Sbjct: 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLS 302
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNPLAM AG TL +L P +Y + L G+ A +K G M G FF
Sbjct: 303 GNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFF 361
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T+ PV N++ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE
Sbjct: 362 TDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAE 421
Query: 469 KV 470
Sbjct: 422 IA 423
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 785 bits (2030), Expect = 0.0
Identities = 227/421 (53%), Positives = 285/421 (67%), Gaps = 2/421 (0%)
Query: 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
SE F AK +PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP
Sbjct: 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGP 63
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I+GHA +VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M
Sbjct: 64 LILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMS 123
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
LRLAR +TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY 183
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
ND L + + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMT
Sbjct: 184 NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMT 242
Query: 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
GFRLA+GGA E G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGN
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGN 302
Query: 351 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
PLAM AG+ TL+ L+E PG Y YL + L G+ + K+ G + M FFT
Sbjct: 303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
EGPV F+DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K
Sbjct: 363 EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRK 422
Query: 470 V 470
Sbjct: 423 A 423
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 785 bits (2031), Expect = 0.0
Identities = 175/422 (41%), Positives = 248/422 (58%), Gaps = 2/422 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
+ +KS F KEL PGGVNSPVRA +V P +G++++ +DG +D V ++
Sbjct: 8 SGEKSRMLFERTKELFPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAY 65
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I+GH +VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA
Sbjct: 66 GPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT 125
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +RLAR +TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL
Sbjct: 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVT 185
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
P+NDV ALE +F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV
Sbjct: 186 PYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEV 245
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+TGFRL GAQ YF + D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT +
Sbjct: 246 VTGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFN 305
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
+P+ M AG+ TLK L+E Y + L + + + G + M F
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFI 365
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
V N A+K++ + + + ML GV+ APS EA FT L H + ++ +
Sbjct: 366 GVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLR 425
Query: 469 KV 470
Sbjct: 426 SS 427
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 735 bits (1900), Expect = 0.0
Identities = 135/442 (30%), Positives = 203/442 (45%), Gaps = 19/442 (4%)
Query: 37 MSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI 96
MS+ + +RK + S A+ +MP GV + RAF + +G H D+
Sbjct: 1 MSILNDYKRKT---EGSVFWAQRARSVMPDGVTADTRAFDPH---GLFISDAQGVHKTDV 54
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
DGN Y+D+ G G ++GH +V AA+ E + G + A LE AE +++A PSI
Sbjct: 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIR 114
Query: 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216
+RF SGTE + LR+ARAFTGR I++FEG YHG D +G G P +PG
Sbjct: 115 KLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APG 171
Query: 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
V T TL +D+ + +F N+ +IAA I EPV + G FL +
Sbjct: 172 VLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231
Query: 277 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336
++ GAL I DEV++GFR+ G Q V PDLT L K GGLP G GGR D+M +++
Sbjct: 232 RQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLS 291
Query: 337 PAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
+ GT +GNP+ A I + + E +N + + + + G
Sbjct: 292 RGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 395 ICGGYISGMFGFF------FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448
F T+ + + + A ++ EGV +
Sbjct: 352 WLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--S 409
Query: 449 GFTSLAHSSDDIQHTITAAEKV 470
F S H + ++H +T ++V
Sbjct: 410 VFLSAQHEREHVEHLVTTFDRV 431
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 720 bits (1861), Expect = 0.0
Identities = 134/448 (29%), Positives = 204/448 (45%), Gaps = 22/448 (4%)
Query: 25 SSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIV 84
S S +++ S A+ MPGG + + P+V
Sbjct: 29 GRSPASDTAEKAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFHRPF---PLV 85
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 144
GS D+DG+ Y++++G + + GH+ + AA+ + G + E +
Sbjct: 86 IAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALF 145
Query: 145 AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 204
AE V PSI++VRF NSGTEA + L A A TGR+ ++ F+G YHG L+ S
Sbjct: 146 AEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGG----LLNFAS 201
Query: 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264
G P A Y + +NDV +L + + + AAI++EP++G G +
Sbjct: 202 G----------HAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPA 251
Query: 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 324
+ FL+ +R GALLIFDEVMT RL+ GGAQE G++ DLTTLGK IGGG+ GA
Sbjct: 252 ERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGA 310
Query: 325 YGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
+GGRRD+ME PA G AGT + N L M+AG L ++ L+
Sbjct: 311 FGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA 370
Query: 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442
+ + + + + F+ P+ + D + ++ F+ ML +G+Y A
Sbjct: 371 NLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA 430
Query: 443 PSQFEAGFTSLAHSSDDIQHTITAAEKV 470
P A +A + A
Sbjct: 431 PRGMYALSLEIADA--GRDAFAEALADF 456
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-67
Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 53
Query: 112 IIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSG 164
GH +V+AA+ +KK LE L E++ VP + V +G
Sbjct: 54 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTG 111
Query: 165 TEACMGVLRLARAFTGRERIIKFEGCYHG----------HADPFLVKAGSGVATLGLPDS 214
+EA +++ARA T R I F G YHG +P+ AG G
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPY--SAGMG------LMP 163
Query: 215 PGV---PKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFL 269
V ++ + ++++ +F+N+ +IAAI++EPV G GF A P F+
Sbjct: 164 GHVYRALYPCPLHGIS-EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFM 222
Query: 270 NAIRRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGGLPVG 323
+R + E+G +LI DEV +G G A E GV PDLTT K I GG P+
Sbjct: 223 QRLRALCDEHGIMLIADEVQSGA-----GRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLA 277
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
GR ++M+ VAP G GT +GNP+A A + LK ++
Sbjct: 278 GVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQEN 319
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 1e-66
Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 69/372 (18%)
Query: 37 MSVSVEEQRKNFTL---KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHM 93
M E+ R T +S+ + + GV + + P+ G +
Sbjct: 5 MVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTM---------PVYAVRAGGGIV 55
Query: 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMV 148
D+DGN ID +G++ +V+ A+ + + + E +
Sbjct: 56 EDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVA--VCEQL 113
Query: 149 ISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----------HAD 196
P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 114 NRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVM 173
Query: 197 PFLVKAGSGVATLGLPDSPGV------------PKGATYETLTAPFNDVSALENLFENNK 244
P+ K G G P +P + G T + +
Sbjct: 174 PY--KDGFG------PFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVIDKQI 223
Query: 245 G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---- 298
G +AA+++EP+ G GFI P FL + ++N + I DEV TGF
Sbjct: 224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----ARTGA 278
Query: 299 --AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
A E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+A A
Sbjct: 279 MFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPIACAA 335
Query: 357 GIHTLKRLKEPG 368
+ T++ ++ G
Sbjct: 336 ALATIETIESEG 347
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 2e-66
Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----- 193
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 145
Query: 194 ----------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243
P G + P + + ++ L+ F+
Sbjct: 146 ASATYSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLI 196
Query: 244 K----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GR 251
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A + GVTPD+ TL K +G GLP+ A I E T +PL
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLP 310
Query: 354 MTAGIHTLKRLKEPG 368
G+ L ++ G
Sbjct: 311 AAVGLRVLDVVQRDG 325
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 3e-66
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 44/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 136
P+ G + D DGN +ID +G + V AA+ +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
++ +AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 107 EQYVQ--VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGR 164
Query: 195 --------ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241
A K+ V + G T E + E
Sbjct: 165 TNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIE 218
Query: 242 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AAII+EP+ G GFI P P FL + ENG + I DEV TGF
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----AR 273
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+
Sbjct: 274 TGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVT 330
Query: 354 MTAGIHTLKRLKEPG 368
A + L ++E
Sbjct: 331 CAAAVAALGVMRELD 345
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 4e-64
Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGA 136
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
+ LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVT--LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG- 142
Query: 195 ADPFLVKAGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFEN 242
V ++ + G+ P Y A+ L
Sbjct: 143 ---------CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTE 192
Query: 243 NK-----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL----- 247
Query: 298 G------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP
Sbjct: 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNP 303
Query: 352 LAMTAGIHTLKRLKEPG 368
++ AG+ L+ +
Sbjct: 304 ISAAAGLAVLETIDRDD 320
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 6e-59
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 35/323 (10%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ +
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86
Query: 137 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195
P E + + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 87 PMRGE--FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT 144
Query: 196 DPFLVKAGSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIA 248
+ +L + P + + P+NDV AL+ + A
Sbjct: 145 ----------MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TA 187
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 307
A+ILEPV G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ P
Sbjct: 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +GGG+P+G R ++ + G T GNPLAM AG+ ++ L+
Sbjct: 248 DILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERT 304
Query: 368 GTYEYLNKITGELTQGIIDAGKK 390
+E ++ + +
Sbjct: 305 RLWERAAELGPWFMEKLRAIPSP 327
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 7e-57
Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 46/340 (13%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADD 118
+++++ + + P+V D +G ++D+DGN+Y+D+ G +G +
Sbjct: 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHP 62
Query: 119 QVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGV 171
+V+ E M+K F LE LA+ +++ P + F NSGTEA
Sbjct: 63 EVIKIGIEQMQKLAHAAANDFYNIPQLE--LAKKLVTYSPGNFQKKVFFSNSGTEAIEAS 120
Query: 172 LRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAG-----SGVATLGLPDSPGVP 218
+++ + TGR+ II F G +HG A + ++ GV + P+ P
Sbjct: 121 IKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP 179
Query: 219 KGATY-----ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
E + + + E+A I EP+ G G++ P +F ++
Sbjct: 180 WHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQ 239
Query: 274 RITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGG-LPVGAYG 326
++ K+ G LL+ DEV G G A E F PD+ TL K +GGG +P+GA
Sbjct: 240 KLAKKYGILLVDDEVQMGL-----GRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATI 294
Query: 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
R+D+ P + T GN LA G + +K+
Sbjct: 295 FRKDLDF-----KPGMHSNTFGGNALACAIGSKVIDIVKD 329
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 7e-54
Identities = 84/336 (25%), Positives = 139/336 (41%), Gaps = 56/336 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +F +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L E ++ + + EMV +N+G EA ++ AR + R II E
Sbjct: 79 QLGP--WYEK-VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCED 135
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+HG + + + + +G + + P+ D+ AL+ N
Sbjct: 136 NFHGRT----------MGAVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN- 182
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
AA ILEP+ G +G P FL + K+ L + DE+ TG A
Sbjct: 183 --TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC--- 237
Query: 300 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ VTPD+ LGK +GGG+ P+ RDI+ + P G T GNPLA
Sbjct: 238 -DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLAC 289
Query: 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
I L+ L+E E ++ +L + +
Sbjct: 290 AVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-53
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 55/315 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA 136
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +F
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFE 188
L E E I+ + + V +N+G EA +LAR + + +I+
Sbjct: 118 NVLGE--YEEY-ITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAA 174
Query: 189 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENN 243
G + G ++ + P G + P+ND+ ALE ++
Sbjct: 175 GNFWGRT----------LSAISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDP 222
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGG 298
+AA ++EP+ G +G + P P +L +R + + L I DE+ TG LA
Sbjct: 223 N--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-- 278
Query: 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 353
+Y V PD+ LGK + GGL PV A DIM + P G T GNPL
Sbjct: 279 --DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLG 329
Query: 354 MTAGIHTLKRLKEPG 368
I L+ L+E
Sbjct: 330 CRVAIAALEVLEEEN 344
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 8e-53
Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+V KG ++D++ Y D++ ++ GH +L A+ K T +F +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L ++ + + V +N+G EA +L R + +I+ +
Sbjct: 108 PLGI--CERY-LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 164
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+ G + + + + P++D+ ALE ++
Sbjct: 165 NFSGRT----------LGCISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
+ A I+EP+ G +G I P ++L + I K+ L + DEV TG L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--- 267
Query: 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ V PD+ LGK + GG P+ A DIM ++ P G T GNPLA
Sbjct: 268 -HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAA 319
Query: 355 TAGIHTLKRLKEPG 368
+ + L L
Sbjct: 320 SICVEALNVLINEK 333
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 6e-52
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 51/309 (16%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K S +
Sbjct: 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN 69
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
P E LA ++ + V F NSGTE+ ++LAR + + + I FE +
Sbjct: 70 PWQEE--LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSF 127
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG +L P KG +E L A ND+ ++ L +
Sbjct: 128 HGRT----------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE--- 172
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A II+E + G G DFL+ ++ I KE LLI DEV TG R AY +
Sbjct: 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY----Q 228
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+F + PD+ L K +GGG+P+GA + + G T GNPLA AG
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAG 281
Query: 358 IHTLKRLKE 366
+ +++
Sbjct: 282 TVVVDEVEK 290
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-51
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K S F
Sbjct: 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWN 81
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+E LAE++ V F N+GTEA +++AR + + RI+ +
Sbjct: 82 RPQME--LAELLSKNTFG-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + +L P K +E L FN+V L +
Sbjct: 139 HGRT----------LGSLTATGQPKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED--- 183
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
+ A+ LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV
Sbjct: 184 VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV 243
Query: 306 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 361
PD+ T K +GGG+P+GA +V + + G T GNPLA AG+ +
Sbjct: 244 VPDVLTTAKGLGGGVPIGAV--------IVNERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393
K L + G E + + L + + + ++
Sbjct: 296 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDV 327
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-51
Identities = 88/333 (26%), Positives = 138/333 (41%), Gaps = 51/333 (15%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
IV + +G +++D +Y+D+ G +G+ + A + + K TS +
Sbjct: 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYN 77
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+ A+ + A E V F NSGTE+ G ++ AR + + I F+ +
Sbjct: 78 ENIAA--AAKNLAKASAL-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSF 134
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + L L + K ++ L A +ND+S++E L
Sbjct: 135 HGRT----------LGALSLTANEKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK--- 179
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
AIILE V G G DF A+R++ E LLI DE+ G R AY E
Sbjct: 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAY----E 235
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+ + PD+ T K +G GL VGA+ + + A +AG T GNPL
Sbjct: 236 HAQILPDIMTSAKALGCGLSVGAFVINQKV------ASNSLEAGDHGSTYGGNPLVCAGV 289
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
+ KE E +NK+T L Q + + +
Sbjct: 290 NAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-51
Identities = 92/326 (28%), Positives = 138/326 (42%), Gaps = 53/326 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
+ KGS +WD G EYID+ G +GH ++ AL + TS F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 191
L L +I A + E V F+NSGTEA +LAR + + +II F +
Sbjct: 100 PALR--LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAF 156
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + + T+ + P G + PFND+ A++ + +++
Sbjct: 157 HGRS----------LFTVSVGGQPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH--- 201
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A+++EP+ G G A P+FL +R + E+ ALL+FDEV G R AY
Sbjct: 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAY----M 257
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
++GVTPD+ T K +GGG PV A M + G T GNPLA
Sbjct: 258 HYGVTPDILTSAKALGGGFPVSA-------MLTTQEIASAFHVGSHGSTYGGNPLACAVA 310
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQG 383
+ P + ++ + Q
Sbjct: 311 GAAFDIINTPEVLQGIHTKRQQFVQH 336
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 6e-48
Identities = 70/356 (19%), Positives = 112/356 (31%), Gaps = 54/356 (15%)
Query: 59 VAKELMPGGVNSPVRAFKSVG--------GQPIVFDSVKGSHMWD-IDGNEYIDYVGSWG 109
V + G +P R + +G + GS++ D I G Y+D
Sbjct: 5 VKSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVA 64
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENV-------LAEMVISAVPSIEMVR--F 160
+ +G ++ + + +V E + + F
Sbjct: 65 SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFF 124
Query: 161 VNSGTEACMGVLRLARAFTGRE------------RIIKFEGCYHG---------HADPFL 199
V G A L+ A + R +++ G +HG + P +
Sbjct: 125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTI 184
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLT-APFNDVSALENLFENNKGEIAAIILEPVVGN 258
A D+P + G + + FE +IA + EP+ G
Sbjct: 185 -TARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGE 243
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF----RL-AYGGAQEYFGVTPDLTTLG 313
G +P+F A+R + E ALLIFDEV TG AY + V PD+ G
Sbjct: 244 GGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAY----QQLDVAPDIVAFG 299
Query: 314 K-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
K G+ G A P T GN M L+ ++ G
Sbjct: 300 KKTQVCGVMAGRRVDEVADN---VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-47
Identities = 58/344 (16%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 139
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105
Query: 140 -----LENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER---------- 183
L E ++S P + + + G+ + + + +
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 184 ----------------IIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVP 218
I+ F G +HG H+ K + P +
Sbjct: 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPIAPFPRLK 224
Query: 219 KGATYETLTAPFNDVSALENL------FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
+ LE + + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 273 RRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVT--PDLTTLGKIIGGGLPVGA 324
R I++++G + DEV TG G A E++G+ D+ T K + G
Sbjct: 285 RDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
Query: 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
E P P T G+P + +K
Sbjct: 340 --------EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 375
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 44/359 (12%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
+R F V +G + DI G Y+D + G+ ++ A + ++
Sbjct: 23 GMRPFSPNS--TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80
Query: 131 ----GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TG 180
S ++ LAE + + ++ F NSG+EA ++AR +
Sbjct: 81 LSYFPMSQSHEPAIK--LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPH 138
Query: 181 RERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYE 224
R + + YHG +PF SG + PD +P
Sbjct: 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIEREN 194
Query: 225 TLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
V ++ + E IAA I+EP++ G + D++ A+ +++GALL
Sbjct: 195 IYDVEC--VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALL 252
Query: 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP- 340
I DEV+ GF R + V PD+ T+ K I LP+ A +R+I E G
Sbjct: 253 ISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEY 312
Query: 341 -MYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397
++ T GNP A + L+ ++ E ++ L + + + H + G
Sbjct: 313 EFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-41
Identities = 83/349 (23%), Positives = 128/349 (36%), Gaps = 68/349 (19%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ +S G + DI+G EY D S + GH ++ A+ + + K +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK---------IA 77
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRE 182
+ LAE +I P + V + +SG EA L++A + ++
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 183 RIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
+ I + YHG H P + +P G E
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECR 193
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIF 285
+ L L E + EIAA+ +E +V G SG I +L +R + L+I
Sbjct: 194 DQ---CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250
Query: 286 DEVMTGF-RLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP 340
DEV TGF R G A E+ V PDL GK I GG LP+ DI + A
Sbjct: 251 DEVATGFGRT---GKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDD 305
Query: 341 MYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383
T +GN L + L + E + + + +L
Sbjct: 306 YENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL 354
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK-----GT 132
V +G ++D G Y+D GS G + IGH +V + + G+
Sbjct: 10 KPYPVAVRGEGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGS 67
Query: 133 SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERII 185
F + L E A + V V+ G+EA ++LAR + GR ++I
Sbjct: 68 QFSSDVLEE--YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPF 230
YHG + + +L P++ A
Sbjct: 126 TRVPSYHG----------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA-- 173
Query: 231 NDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEV 288
D L L E E +AA + EPVVG S +AP P + +R I E G + I DEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 289 MTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG 345
M+G R + + GVTPD+ LGK + G P+ + E V + G
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 346 -TLSGNPLAMTAGIHTLKRLKEPG 368
T +G+P+++ AG+ L ++
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVERED 317
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-39
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 55/369 (14%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + + +G +WD +G + ID +G+ ++ A+ K
Sbjct: 22 THMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAK 81
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
G + LA+M+I P + V F SG++A ++L +
Sbjct: 82 NLAYYHAYVGHGTEASIT--LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVL 139
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGVPK-GATYE 224
+++II YHG SGV T L V A Y
Sbjct: 140 GRPEKKKIISRWRGYHG----------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189
Query: 225 TLTAPFND---------VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRR 274
+ LE + E IAA I EP++G G + P + I+
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249
Query: 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+ K+ LL+ DEV+TGF RL +++G+ PDL T+ K + P+ +
Sbjct: 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVW 309
Query: 333 EMVA----PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388
+++ G + T S +P+ + AG+ L+ + E + + A
Sbjct: 310 QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA- 368
Query: 389 KKAGHAICG 397
GH G
Sbjct: 369 -VGGHKNVG 376
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-39
Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 42/334 (12%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + G V +G ++WD +GN+ ID + +G+ A M+
Sbjct: 23 TDTASLNQAG--ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME 80
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
+ P ++E L+ ++ P + V + NSG+E+ ++R+ R +
Sbjct: 81 ELPFYNTFFKTTHPAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQ 138
Query: 179 --TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKG 220
++ +I YHG H D + G+A + P K
Sbjct: 139 GKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKD 194
Query: 221 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279
T + LE + +AA + EP+ G G I P + I RI ++
Sbjct: 195 MTPDEFGVVA--ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY 252
Query: 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337
LL+ DEV+ GF R ++FG PDL T K + G LP+GA + + E +
Sbjct: 253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA 312
Query: 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
G T SG+P+ + L++ G +
Sbjct: 313 GGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-39
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 54/356 (15%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 131 ---GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 178
F P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATL---GLP----------------DSPGVPK 219
+ ++I YHG +A G+ +
Sbjct: 140 ATKTKMIGRARGYHG----------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189
Query: 220 GATYETLTAPFNDVSA--LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
A + A L L E + IAA+ +EP+ G++G + P +L R I
Sbjct: 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249
Query: 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEM 334
++ LL+FDEV+TGF R + FGVTPDL + K + G +P+GA +I +
Sbjct: 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQT 309
Query: 335 VAPAGPMYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
A S +P+A AG+ L L++ + + ++ + +
Sbjct: 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 5e-38
Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 36/335 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
+V +G ++ D++G Y+D + G ++ A ++
Sbjct: 44 TVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRM 103
Query: 136 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 188
+ + L+E ++ P V + NSG+EA ++++ + +I+
Sbjct: 104 SDQTVM--LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRW 161
Query: 189 GCYHGHADPFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSAL 236
YHG + + +G GLP P + F L
Sbjct: 162 NAYHG--VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 219
Query: 237 ENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E + + IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 220 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 279
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSG 349
+ TPD K + G P+GA ++ + + T SG
Sbjct: 280 GNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 339
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+P+ + + + G E + ++ + +
Sbjct: 340 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL 374
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 87/339 (25%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
S +G + DG +D + SW AI G+ Q+ AA+ + +
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---------MS 76
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF-----TG 180
+V L +++ P +E V +SG+ A V +++A +
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVA---VEVAMKMALQYWQAKGEA 133
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFNDV 233
R+R + F YHG D F + LP++ P + D+
Sbjct: 134 RQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191
Query: 234 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF
Sbjct: 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251
Query: 293 -RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQAG 345
R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 252 GRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
T GNPLA A +L L+ + + I +L + +
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 65/345 (18%)
Query: 82 PIVFDSVKGSH---MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 138
P+V + G+ + D E +D + SW AI GH + AL ++
Sbjct: 55 PVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------- 106
Query: 139 LLENV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF---- 178
+ +V LA++++ P ++ V F +SG+ + V ++A +
Sbjct: 107 -MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVS---VEVAAKMALQYWRGR 162
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF---- 230
G+ R++ + G YHG D F ++ P + + AP
Sbjct: 163 GLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD 214
Query: 231 ---NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFD 286
+A E + GE+AA+++EPVV G G P +L+ +R I + LLIFD
Sbjct: 215 YDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274
Query: 287 EVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAG 339
E+ TGF R G A ++ GV+PD+ +GK + GG L + A D+ AG
Sbjct: 275 EIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAG 331
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+ T NPLA + +++ L + ++ LT G+
Sbjct: 332 ALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 78/374 (20%), Positives = 130/374 (34%), Gaps = 47/374 (12%)
Query: 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG 114
+A + A L P S A G V +G + D +G E +D + IG
Sbjct: 16 QALDAAHHLHP---FSANNALGEEG--TRVITRARGVWLNDSEGEEILDAMAGLWCVNIG 70
Query: 115 HADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167
+ D++ M++ + LA+ + P + V F G+EA
Sbjct: 71 YGRDELAEVAARQMRELPYYNTFFKTTHVPAIA--LAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 168 CMGVLRLARAF------TGRERIIKFEGCYHG--------------HAD-PFLVKAGSGV 206
+R+ R + + II + YHG HA + V
Sbjct: 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI----PDV 184
Query: 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 265
+ P+ E LE +AA I EPV G G I
Sbjct: 185 HHINQPNWWAEGGDMDPEEFGLAR--ARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 323
+ I+RI + LLI DEV+ GF R + G+ P + T+ K + G P+G
Sbjct: 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIG 302
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383
++ ++ T SG+P+A + L+ L+E +++ + +
Sbjct: 303 GSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361
Query: 384 IIDAGKKAGHAICG 397
+A H + G
Sbjct: 362 KWEA--LTDHPLVG 373
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-34
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 57/343 (16%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ V +G ++ DG ID A +G+ +++ A+
Sbjct: 27 QEMAKLGKSA--QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAM 84
Query: 130 K-----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----- 178
LAE + + P + + F G+ A LR + +
Sbjct: 85 VLPYASPWYMATSPAAR--LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142
Query: 179 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGV--------- 217
++RII YHG S T +
Sbjct: 143 RPQKKRIIVRYDGYHG----------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192
Query: 218 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 275
+ E V E+ E+ + IAA + EP++ + G I P + + I
Sbjct: 193 HAGNRSQEAFLDDL--VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250
Query: 276 TKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+++ L I DEV+TGF R + +++ FGV PD+ T K + G +P+G ++
Sbjct: 251 CEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVL 310
Query: 333 EMVA---PAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 371
++ G + G T S P+A A + ++ ++ G +
Sbjct: 311 ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVD 353
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-33
Identities = 69/390 (17%), Positives = 117/390 (30%), Gaps = 87/390 (22%)
Query: 82 PIVFDSVKGSHMWDID------GNEYIDYVGSWGPAIIGHADDQVLAA--------LGET 127
V DS G + ++ D SW LA G
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF------- 178
M L+ AE+++ V R F ++G+ A L++A
Sbjct: 417 MFPE--NVYEPALK--CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF 472
Query: 179 --------TGRERIIKFEGCYHG----------------------------HADPFLVKA 202
++I G YHG DP V
Sbjct: 473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFL 532
Query: 203 GSGVATLGLPD--SPGVPKGATYETLTAPFND-----------VSALENLFE-----NNK 244
+G + LP+ S P+ T+ + F+ + L +
Sbjct: 533 SNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS 592
Query: 245 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302
+ A+I+EPV+ G G P F + + +IFDEV TGF RL E
Sbjct: 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTEL 652
Query: 303 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGI 358
G PD+ K++ GG +P+ + + + + + S + +
Sbjct: 653 LGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 712
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAG 388
++ K+P T + L + +
Sbjct: 713 KAIQWFKDPETNHNITSQGKTLRELWDEEL 742
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-07
Identities = 62/435 (14%), Positives = 111/435 (25%), Gaps = 136/435 (31%)
Query: 12 LGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNS- 70
LSC LT RF + +S++ T + + K L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL---DCRPQ 316
Query: 71 --PVRAFKSVGGQPIVFDSV-----KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
P + P + G WD +V
Sbjct: 317 DLPREV---LTTNPRRLSIIAESIRDGLATWD-----NWKHVNCD--------------K 354
Query: 124 LGETMKKGTSFGAPCLLENVLAEMVI----SAVPSIEMVRF-VNSGTEACMGVL-RLARA 177
L ++ + P + + + + +P+I + + M V+ +L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
LV+ +T+ +P Y L + AL
Sbjct: 415 --------------------SLVEKQPKESTISIPS--------IYLELKVKLENEYALH 446
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPD--FLNAIRR--ITKENGALLIFDEVMTGFR 293
+ + + I P D F + I E+ E MT FR
Sbjct: 447 RSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------PERMTLFR 494
Query: 294 LAYGGAQEYFGVTPDLTTLG-KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
+ + D L KI A G +
Sbjct: 495 MVF----------LDFRFLEQKIRHDSTAWNASGSILN---------------------- 522
Query: 353 AMTAGIHTLKRLKEPGTYE-YLNKITGELTQGIIDAGK---KAG-HAICGGYISGM-FGF 406
TL++LK Y+ Y+ + + + K + IC Y +
Sbjct: 523 -------TLQQLK---FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 407 FFTEGPVYNFEDAKK 421
+ ++ E+A K
Sbjct: 573 MAEDEAIF--EEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 56/386 (14%), Positives = 98/386 (25%), Gaps = 102/386 (26%)
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K+++ V AF V D K I E ID++ + A
Sbjct: 19 KDILS--VFED--AFVDNFDCKDVQDMPKS-----ILSKEEIDHI-----IMSKDAVSGT 64
Query: 121 LAALGETMKKGTSFGAPCLLENVLA---EMVISAV------PSIEMVRFVNSGTEACMGV 171
L + K +E VL + ++S + PS+ ++
Sbjct: 65 LRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 172 LRLARAFTGRERIIKF--EGCYHGHADPFLV---KAGSG---VATLGLPDSP---GVPKG 220
A+ R + + ++ GSG VA +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 221 ATYETL---TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
+ L +P + L+ L + S +RR+ K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLK 239
Query: 278 ENG---ALLIFDEV-----MTGFRL---------------AYGGAQEY--------FGVT 306
LL+ V F L A +T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 307 PD--LTTLGKIIG---GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
PD + L K + LP + L+ NP + + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR--------------------EV--LTTNPRRL-SIIAES 336
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDA 387
R T++ + + II++
Sbjct: 337 IR-DGLATWDNWKHVNCDKLTTIIES 361
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 290 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 334
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 50/263 (19%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 290 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 343
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 344 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 400
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 451
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 452 SLAHSSDDIQHTITAAEKVKMRF 474
+ + + I I
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 58/266 (21%), Positives = 80/266 (30%), Gaps = 57/266 (21%)
Query: 231 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 393
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 449
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 450 ----FT-SLAHSSDDIQHTITAAEKV 470
FT S H I + A + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLL 396
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 55/266 (20%), Positives = 91/266 (34%), Gaps = 58/266 (21%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 393
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 449
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 450 ----FT-SLAHSSDDIQHTITAAEKV 470
+ H+ IQ + +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAA 411
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 52/266 (19%), Positives = 85/266 (31%), Gaps = 60/266 (22%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 289 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 340
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 393
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 450
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 451 T------SLAHSSDDIQHTITAAEKV 470
+ H+ D I I KV
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKV 388
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 60/266 (22%), Positives = 94/266 (35%), Gaps = 56/266 (21%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 285
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 286 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 338
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 339 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 393
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 449
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 450 ----FT-SLAHSSDDIQHTITAAEKV 470
S H+ + I A +V
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQV 392
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 256
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 257 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 307
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 308 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 354
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 355 TA 356
Sbjct: 312 MV 313
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.98 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.98 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.98 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.98 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.98 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.96 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.98 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.98 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.98 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.97 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.97 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.97 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.97 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.96 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.96 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.95 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.95 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.95 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.95 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.94 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.94 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.94 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.94 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.94 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.94 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.93 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.93 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.93 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.93 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.93 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.93 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.93 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.93 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.93 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.93 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.92 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.92 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.92 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.92 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.92 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.91 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.91 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.91 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.91 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.91 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.91 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.91 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.9 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.9 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.9 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.9 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.9 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.89 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.89 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.89 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.89 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.89 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.89 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.89 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.89 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.88 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.88 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.88 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.88 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.88 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.88 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.88 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.88 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.87 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.87 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.86 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.86 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.85 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.84 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.84 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.83 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.83 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.83 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.82 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.82 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.81 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.81 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.81 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.8 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.8 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.8 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.79 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.79 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.79 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.78 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.78 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.77 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.77 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.76 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.76 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.75 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.75 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.74 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.74 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.74 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.72 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.72 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.64 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.62 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.62 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.61 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.54 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.51 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.5 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.4 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.4 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.05 |
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-80 Score=622.75 Aligned_cols=408 Identities=33% Similarity=0.539 Sum_probs=374.6
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
....++|+++++++++++|+|+++++|.|.++ |+++++++|+|+||+|||+||||+++|+++++||+||+|++|+.+
T Consensus 38 ~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~ 114 (454)
T 4ao9_A 38 TDANPASQRQFEAQARYMPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIE 114 (454)
T ss_dssp HHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHH
T ss_pred hhcCcHhHHHHHHHhhhCCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHH
Confidence 34478899999999999999999999988764 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 127 ~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
|++++.+++.++..+.+|+++|++.+|+.++|+|+|||+||++.|||+||.+++|++||.|+++|||+++......+.
T Consensus 115 q~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~-- 192 (454)
T 4ao9_A 115 AMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP-- 192 (454)
T ss_dssp HHHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT--
T ss_pred HHhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC--
Confidence 999988888888889999999999999999999999999999999999999999999999999999988765432221
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
.....+...+||||++++++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+|
T Consensus 193 ------------~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D 260 (454)
T 4ao9_A 193 ------------TTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260 (454)
T ss_dssp ------------TSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ------------ccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE
Confidence 11223577889999999999999888899999999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC-CCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
||||| |+|.+|+++++|+.||++|++|++|+|+|+|++++++++++.+.+ .++.+|++||++||++|+|++++|+.++
T Consensus 261 EV~tG-R~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~ 339 (454)
T 4ao9_A 261 EVMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF 339 (454)
T ss_dssp CTTGG-GGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS
T ss_pred CCCcC-CCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh
Confidence 99998 999999999999999999999999999999999999999999975 3567799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC
Q 011856 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 445 (476)
++++++++++++++|+++|+++..+++++.++++.|+|++++|.++++.++.+....+......++..|+++||++.|.+
T Consensus 340 ~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~ 419 (454)
T 4ao9_A 340 TPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG 419 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC
T ss_pred ccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC
Confidence 89999999999999999999999999999999999999999998887788777777777788889999999999999875
Q ss_pred CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+++++.||++|||+++++|++++.+.
T Consensus 420 --~~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 420 --FVVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp --EEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred --CEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999864
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-73 Score=574.69 Aligned_cols=402 Identities=25% Similarity=0.347 Sum_probs=347.5
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..+.|+|++++++++++++.|+.++ +|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.+
T Consensus 21 ~iPGP~s~~l~~r~~~~~~~~~~~~---------~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ 91 (456)
T 4atq_A 21 AFPGPKSQALAERRSAVVAAGVASG---------VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQE 91 (456)
T ss_dssp SSSCHHHHHHHHHHHHHBCTTCCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCCCCC---------CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHH
Confidence 5668899999999999999988654 4999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh
Q 011856 127 TMKKGTS---FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 127 ~l~~~~~---~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
|+++..+ +..+++...+|+++|.+..| ..++++|+|||+||++.|+|+||.+++|.+||.++++|||++++++..
T Consensus 92 q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 92 AAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccccc
Confidence 9998543 34568889999999999998 378999999999999999999999999999999999999999999988
Q ss_pred cCCCCc-cCCC-CCCCCCCCCCCCceeeccC-----------CCHHHHHHHHhc-----CCCCeEEEEEcccCCCCCccc
Q 011856 202 AGSGVA-TLGL-PDSPGVPKGATYETLTAPF-----------NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIA 263 (476)
Q Consensus 202 ~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-----------~d~~~le~~l~~-----~~~~~a~vi~ep~~~~~G~i~ 263 (476)
++.... ...+ |.. ..+..+|+ ++.+.+++.++. .++++++||+||+++++|.+.
T Consensus 172 t~~~~~~~~~~~p~~--------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 172 TAKAMPYKTNFGPFA--------PEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp CCCCTTTTTTSCSCC--------SSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccCccccccCCCCcc--------ccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 876431 1111 111 12333332 234444444331 345899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc
Q 011856 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (476)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~ 342 (476)
|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.|||+|++|+++||+|+|++++++++++.+. +..
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~ 320 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGG 320 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhccc---ccC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999887 456
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-----CCceEeeeeceeEEEEEecCCCcCch
Q 011856 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
|++||++||++|++++++|+.++++++.+++++++++++++|+++..++ +++.+|||.|+|++++|.++..
T Consensus 321 ~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~---- 396 (456)
T 4atq_A 321 LGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS---- 396 (456)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS----
T ss_pred CCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC----
Confidence 8999999999999999999999999999999999999999999998775 5688999999999999976421
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++.+...++...|+++|+++.+.+. +.+++ ++++|++++|+++++|++++++.
T Consensus 397 --~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 397 --KEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp --CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --CCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 235667778899999999999987654 34554 78999999999999999999863
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-70 Score=555.66 Aligned_cols=414 Identities=17% Similarity=0.204 Sum_probs=336.8
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-
Q 011856 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (476)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~- 133 (476)
.+.++++++...+. +.++.+... .|++|++|+|+|+||+|||+||||.++|+++++||+||+|.+|+.+|+++...
T Consensus 26 ~~~~~~~~~~~h~~-t~~~~~~~~--~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~ 102 (473)
T 4e3q_A 26 SWEARAETYSLYGF-TDMPSLHQR--GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY 102 (473)
T ss_dssp SHHHHHHHHBCCSS-CCHHHHHHH--CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHhhhcCCCC-CChhhhccC--CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccc
Confidence 35666777766544 234444333 39999999999999999999999999999999999999999999999998543
Q ss_pred ---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcC
Q 011856 134 ---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 134 ---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
++.+++...+|+++|++..| +.++|+|+|||+||++.|+|+||.+ +++.+||.++++|||.+.+++..++
T Consensus 103 ~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg 182 (473)
T 4e3q_A 103 HAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTG 182 (473)
T ss_dssp CCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred cccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccc
Confidence 34467889999999999998 6899999999999999999999876 6778999999999999999999888
Q ss_pred CCCccCCCCCCCCCCCCCCCceeeccC-C---------CHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 204 SGVATLGLPDSPGVPKGATYETLTAPF-N---------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
........+..++......+..+.... . ..+++++.+.+ .++++++||+||+++++|.+.|+++||++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~l 262 (473)
T 4e3q_A 183 KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAI 262 (473)
T ss_dssp CGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHH
Confidence 643321112122211000000011100 0 13456666643 456899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC----CCCccccCC
Q 011856 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGT 346 (476)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~----~~~~~~~~t 346 (476)
+++|++||++||+|||+||| |+|.+|+++++|+.||++|++|++++| +|+|++++++++++.+.. .....|++|
T Consensus 263 r~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T 342 (473)
T 4e3q_A 263 LPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFT 342 (473)
T ss_dssp HHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCT
T ss_pred HHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCC
Confidence 99999999999999999999 999999999999999999999999988 899999999999987753 135679999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 347 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
|++||++|++++++|+.++++++.+++++++++|+++|+++. +++.+.++++.|+|+++++..+..... ...++...
T Consensus 343 ~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~~ 419 (473)
T 4e3q_A 343 ASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLSV 419 (473)
T ss_dssp TTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCH
T ss_pred CCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccc--cccccHHH
Confidence 999999999999999999999999999999999999999985 456788999999999999975432210 01123345
Q ss_pred HHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 427 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 427 ~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..++.+.|+++|+++.+.+ +.+++ ++++|++|+|+++++|++++++++
T Consensus 420 ~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 420 SERIANTCTDLGLICRPLG-QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp HHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999876 34544 689999999999999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-67 Score=533.92 Aligned_cols=427 Identities=47% Similarity=0.866 Sum_probs=375.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
+++++|+++++++++++|+|+++++|.|..++ .+|+++++++|+++||.|||+||||.++++++++||+||+|.+|+.+
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~ 82 (434)
T 3l44_A 3 VKFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITT 82 (434)
T ss_dssp SCCHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence 34778999999999999999999999887665 67999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 127 ~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
+++++..++++++...+|++++++.+++.++++|++||+||++.|+++++.++++++||+++++|||++..++...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 162 (434)
T 3l44_A 83 AAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGP 162 (434)
T ss_dssp HHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-----
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcc
Confidence 99987767889999999999999999888999999999999999999998888999999999999999998888777655
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
.....|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D 242 (434)
T 3l44_A 163 STLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242 (434)
T ss_dssp --CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred cccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 44444545555443445688899999999999998655579999999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (476)
|+|+|||+|.+++.+++++.||++||||++++|+|+|++++++++++.+.+.++..+++|+++|++++++++++|+.+++
T Consensus 243 Ev~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~ 322 (434)
T 3l44_A 243 EVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ 322 (434)
T ss_dssp CTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred ccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 99999988888888999999999999999999999999999999999887555567888999999999999999999887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 446 (476)
+++.++++++++++++.|+++...++.+..+++.|.|+++++......++.....++.....++.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 402 (434)
T 3l44_A 323 EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY 402 (434)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999999887788888899999999999975544444443445556667889999999999999887
Q ss_pred cceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+++++.+|++++++++++|+++++++
T Consensus 403 ~~~rl~~~~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 403 EAWFLTTEHTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp CCEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999998765
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=535.27 Aligned_cols=425 Identities=57% Similarity=0.964 Sum_probs=378.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
++++|+++++++++++|+|+++++|.|..++.+|+++++++|+++||.|||+||||+++++++++||+||+|.+|+.+++
T Consensus 3 ~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~ 82 (429)
T 3k28_A 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVA 82 (429)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||.++++|||++..++...+.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 83 ERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred hhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999988899999999999999999999888899999999999999999888777765544
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 163 LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp ---CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44454455543334568889999999999999865567999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
|+||++|.+++.+++++.||++||||++++|+|+|++++++++++.+.+..+..+.+|+++|++++++++++|+.++ ++
T Consensus 243 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~ 321 (429)
T 3k28_A 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PE 321 (429)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HH
T ss_pred ccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HH
Confidence 99997777788889999999999999999999999999999999988754556688899999999999999999776 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++++++++++++.|+++...++.+..+++.|.++++++.+.+..++.....++.....++.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 401 (429)
T 3k28_A 322 SYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEG 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCC
Confidence 89999999999999999988788888889999999999997666666666666677777889999999999999987777
Q ss_pred eEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 449 GFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 449 ~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++++.+|++++++++++|+++++++
T Consensus 402 ~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 402 LFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp BCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-66 Score=527.98 Aligned_cols=423 Identities=53% Similarity=0.948 Sum_probs=366.6
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
++|.++++++++++|+|+++++|.|..++++|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 84 (429)
T 4e77_A 5 SKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER 84 (429)
T ss_dssp CHHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999888888777789999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 131 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 131 ~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
+..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++...+...+.+.....
T Consensus 85 ~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 164 (429)
T 4e77_A 85 GLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 164 (429)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC-----------------
T ss_pred CcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccC
Confidence 76677899999999999999998889999999999999999999999999999999999999999877766555443333
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.+...+++......+..++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~ 244 (429)
T 4e77_A 165 QPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT 244 (429)
T ss_dssp -CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 34445555555567888999999999999987666899999999999999999999999999999999999999999999
Q ss_pred CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 291 g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|||+|..+..+++++.||++||||++++|+|+|++++++++++.+.+.+...+.+||++|++++++++++|+.++++++.
T Consensus 245 g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 324 (429)
T 4e77_A 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVY 324 (429)
T ss_dssp BTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHH
T ss_pred CcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 99888888889999999999999999999999999999999998875445568889999999999999999999778999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC-CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
++++++++++++.|+++..+++.+..+++.|+|+++++.+. ...++.....++.....++.+.|+++||++.+++.+.+
T Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~ 404 (429)
T 4e77_A 325 ETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAG 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCE
Confidence 99999999999999998878888888999999999999764 35566655666667778899999999999999887778
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 450 FTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 450 ~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++++.+|++++++++++|++++++
T Consensus 405 ~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 405 FMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999865
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-66 Score=523.01 Aligned_cols=425 Identities=72% Similarity=1.202 Sum_probs=379.3
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
.+++|.++++++++++|+|+++++|.|..++++|+++++|+|+++||.||++||||.++++++++||+||+|.+|+.+++
T Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (427)
T 3fq8_A 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++.+...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 82 EKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp TTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98766777899999999999999987899999999999999999999999999999999999999998877766655443
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....++..+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 241 (427)
T 3fq8_A 162 LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp HTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33455555544444568889999999999999877678999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
|+|||+|..+..+++++.||++|+||++++|+|+|++++++++++.+.+.....+.+|+++|++++++++++|+.+++++
T Consensus 242 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 321 (427)
T 3fq8_A 242 ITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp TTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT
T ss_pred ccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99997777788889999999999999999999999999999999988754456688899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++.....++.+.|+++||++.+++.+.
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r 401 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 99999999999999999988777777788999999999997655555555555666667789999999999999988777
Q ss_pred eEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+++++.+|++++++++++|++++++
T Consensus 402 ~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 402 GFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999875
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-70 Score=550.75 Aligned_cols=405 Identities=32% Similarity=0.522 Sum_probs=357.0
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+++|+++++++++++|+|+++++|.|.+ +|+++++++|+|+||+|||+||||+++++++++||+||+|++|+.++++
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~---~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~ 130 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRP---FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA 130 (465)
Confidence 6678999999999999999999988765 4999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++++...+|+++|++++|+.++++|+|||+||++.|++++|.++++++||+++++|||+++..+ ++
T Consensus 131 ~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg------ 202 (465)
T 2yky_A 131 VGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG------ 202 (465)
Confidence 8766778899999999999999987889999999999999999999999999999999999999988777 22
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
|...+++. .++.+||||+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 203 --~~~~g~~~----~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 203 --HAPTNAPY----HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 11223321 466778999999999998655689999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
+ ||+|.+++++++|+.||++||||++++|+|+||+++++++++.+.+ .+..++.+||++||++|++++++|+.++++
T Consensus 277 ~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~ 355 (465)
T 2yky_A 277 T-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR 355 (465)
Confidence 9 8888888899999999999999999999999999999999998875 233567889999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
++.+++++++++++++|+++..+++++.++++.|+|++++|.++++.++.....++.....++++.|+++||++.|++++
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~ 435 (465)
T 2yky_A 356 QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY 435 (465)
Confidence 89999999999999999998777787788999999999999753333444433444455678899999999999987654
Q ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 448 AGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 448 ~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
. +++.+|++||++++++|+++++++
T Consensus 436 ~--~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 436 A--LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 3 788999999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-63 Score=499.89 Aligned_cols=422 Identities=54% Similarity=0.914 Sum_probs=357.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
++++++++++++++++|+|+++++|.|..++..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (424)
T 2e7u_A 2 ERPISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETL 81 (424)
T ss_dssp CCHHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence 46688999999999999999999998876666799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++.+...+|++++++++++.++|+|++||+||++.++++||.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (424)
T 2e7u_A 82 ERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALT 161 (424)
T ss_dssp HTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999877899999999999999999999989999999999999999988776555442211
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....+++.+|++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++ ++||++||+||+
T Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 162 LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp BCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred cCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 1112222332111235778889999999999975334789999999999999999999999999999 999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-C
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (476)
|+||++|..++.+++++.||++||||++++|+|+|++++++++++.+.+.....+.+||++|+++++++.++|+.+++ +
T Consensus 241 ~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 320 (424)
T 2e7u_A 241 MTGFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP 320 (424)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999977777788889999999999999999999999999999999887533455778999999999999999998877 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
++.+++++++++++++|+++..+++....+++.|+|+++++......++.....++.....++.+.|+++||++.+++..
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 400 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE 400 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence 89999999999999999998766776667889999999998642222222222233445568889999999999998766
Q ss_pred ceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 448 AGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 448 ~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+++++.+|++++++++++|++++
T Consensus 401 ~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 401 AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ceEeeccCCHHHHHHHHHHHHHhC
Confidence 678899999999999999998763
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-62 Score=495.24 Aligned_cols=424 Identities=41% Similarity=0.718 Sum_probs=354.5
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
.++++++++++++++++|+.+++|.|.. .+|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~ 86 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVK--PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA 86 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCS--SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccC--CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888776521 24999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++.+...++++++++++++.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+......
T Consensus 87 ~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 87 RGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 87666778999999999999998778999999999999999999998889999999999999999887765544321111
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
..|...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 167 ~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 167 GVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 11222233211123467788999999999997543478999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
+||++|..++.+++++.||++||||++++|+|+|++++++++++.+.+.+...+.+||++|+++++++.++|+.++++++
T Consensus 247 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~ 326 (434)
T 2epj_A 247 TGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV 326 (434)
T ss_dssp TTTTSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred hceeCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 99977777788889999999999999999999999999999999887533445778999999999999999998877889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
.++++++++++++.|+++..++++...+++.|.|+++++.+.+..++.....++.....++.+.|+++||++.+++...+
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 327 YSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcE
Confidence 99999999999999998866667766788999999999864222222222222334457788999999999999876677
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 450 FTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 450 ~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++++.+|++++++++++|+++++++.
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988753
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-61 Score=492.00 Aligned_cols=401 Identities=25% Similarity=0.335 Sum_probs=341.6
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
.+.+++++++++.+++++.|+.+. +|+++++++|+|+||.|||+||||+++++++++||+||+|++|+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~ 92 (453)
T 4ffc_A 22 LPGPRSGALAERRRAAVSAGVGST---------APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQ 92 (453)
T ss_dssp SSCHHHHHHHHHHHHHBCTTTCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCC---------CCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHH
Confidence 446788999999999999887532 48999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhc
Q 011856 128 MKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 128 l~~~~~~---~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~ 172 (453)
T 4ffc_A 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALT 172 (453)
T ss_dssp HHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHC
T ss_pred HHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhc
Confidence 9986543 3678999999999999997 3689999999999999999999988999999999999999999999887
Q ss_pred CCC-CccCCCCCCCCCCCCCCCceeeccCC----C-------------HHHHHHHHhcCCCCeEEEEEcccCCCCCcccC
Q 011856 203 GSG-VATLGLPDSPGVPKGATYETLTAPFN----D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (476)
Q Consensus 203 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (476)
+.. .....+. .....+..+|++ | ++.|++.+. ++++++||+||+++++|.+.+
T Consensus 173 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~~ 243 (453)
T 4ffc_A 173 AKSMPYKSQFG-------PFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIVP 243 (453)
T ss_dssp CCCTTTTTTSC-------SCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBCC
T ss_pred CCCcccccCCC-------CCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCcccC
Confidence 753 2111110 011123333332 3 244444443 347999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccc
Q 011856 265 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343 (476)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~ 343 (476)
+++||++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+. +..+
T Consensus 244 ~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~---~~~~ 320 (453)
T 4ffc_A 244 APGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY---AGGL 320 (453)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTSS
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhc---ccCc
Confidence 9999999999999999999999999999 99988889999999999999999999999999999999999887 3457
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
.+|+++||++|++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. ...++
T Consensus 321 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~ 394 (453)
T 4ffc_A 321 GGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG------TLEPD 394 (453)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT------SCCBC
T ss_pred CCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc------ccCCC
Confidence 889999999999999999988778999999999999999999998888888899999999999996411 12245
Q ss_pred hHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.....++.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|+++++++.
T Consensus 395 ~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 395 AALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999999998764 45565 688999999999999999998753
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=492.60 Aligned_cols=402 Identities=22% Similarity=0.302 Sum_probs=342.3
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..+.+++++++++.+++++.|+.+. +|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 88 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGTT---------MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRS 88 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhccCCcCCC---------CCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHH
Confidence 3457789999999999999876532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh
Q 011856 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 127 ~l~~~~~~---~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
+++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 89 QVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp HHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHh
Confidence 99886443 3678899999999999997 468999999999999999999998899999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceeeccCC------------------CHHHHHHHHhc--CCCCeEEEEEcccCCCCC
Q 011856 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN------------------DVSALENLFEN--NKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 202 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G 260 (476)
++.. .....+ ......+..+|++ +++.+++.+++ .++++++||+||+++++|
T Consensus 169 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG 241 (451)
T 3oks_A 169 TAKVMPYKDGF-------GPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGG 241 (451)
T ss_dssp CCCCTTTTTTC-------CSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTT
T ss_pred cCCCcccccCC-------CCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCC
Confidence 7753 211111 0111234444443 24445555543 235799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~ 339 (476)
.+.++++|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+.
T Consensus 242 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~--- 318 (451)
T 3oks_A 242 FIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPH--- 318 (451)
T ss_dssp CBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSC---
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhc---
Confidence 99999999999999999999999999999999 99988889999999999999999999999999999999999886
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhh
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
+..+.+|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. .
T Consensus 319 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~ 392 (451)
T 3oks_A 319 VSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG------T 392 (451)
T ss_dssp TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT------S
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc------c
Confidence 3457889999999999999999988778999999999999999999998888888899999999999996411 1
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..++.....++.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 393 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 224455667899999999999998764 45666 6889999999999999999864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-61 Score=489.84 Aligned_cols=408 Identities=19% Similarity=0.228 Sum_probs=332.1
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
+.++.++.++++..... ..+.+. ..+|+++++++|+|+||.|||+||||++|++++++||+||+|++|+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFS-ANNALG--EEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHHHHHEECTTE-EHHHHH--HHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccCCcc-cccccc--cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45666666666543221 111111 124899999999999999999999999999999999999999999999999853
Q ss_pred ----CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhh
Q 011856 133 ----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 133 ----~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
.+.++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhc
Confidence 224678999999999999998 5789999999999999999999887 47889999999999999999888
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceeeccC----CC-----------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCC
Q 011856 202 AGSGVATLGLPDSPGVPKGATYETLTAPF----ND-----------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-----------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
++.......+....+ ...+.+|+ ++ +++|++++++. ++++++||+||+++++|.+.++
T Consensus 169 ~~~~~~~~~~~~~~~------~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~ 242 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPD------VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242 (472)
T ss_dssp SCCHHHHHTTCCCSS------EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCC
T ss_pred cCChhhccccCCCCC------cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCC
Confidence 775432211110011 11222222 22 78899988743 2579999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccc
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQ 343 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~ 343 (476)
++||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. .....+
T Consensus 243 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~ 321 (472)
T 3hmu_A 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNH 321 (472)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccc
Confidence 999999999999999999999999999 999888899999999999999999976 89999999999999984 345678
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc
Q 011856 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (476)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (476)
++||++||++|+|++++|+.++++++.++++ ++++++++.|+++ .+++.+.++++.|+|+++++..+.... .. ..+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~-~~-~~~ 398 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASR-AK-FAS 398 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGT-CC-BSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCcccc-cc-ccc
Confidence 8899999999999999999987789999999 9999999999776 457888899999999999996432110 00 001
Q ss_pred c-hHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 423 E-TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 423 ~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ ......+.+.|+++||++.+.+ ..+|++ +.+|++++++++++|+++++++
T Consensus 399 ~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 399 EPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 3345678899999999999877 677774 8999999999999999998765
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-60 Score=487.34 Aligned_cols=407 Identities=19% Similarity=0.241 Sum_probs=333.1
Q ss_pred HHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 54 EEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
..+.++.++++... +..+..+. ..|+++++++|+|+||.|||+||||+++++++++||+||+|++|+.+++++..
T Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~ 87 (476)
T 3i5t_A 12 GAVGAAMRDHILLP----AQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP 87 (476)
T ss_dssp -CHHHHHHHHBCCT----TEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC
T ss_pred hHHHhhcccccccC----cccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 34555555555432 22222222 25899999999999999999999999999999999999999999999999843
Q ss_pred C---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhc
Q 011856 133 S---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 133 ~---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
. +.++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..+
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~ 167 (476)
T 3i5t_A 88 YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACT 167 (476)
T ss_dssp CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhcccc
Confidence 2 25788999999999999998 7899999999999999999999988 889999999999999999998887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceeeccC-----CC---------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCH
Q 011856 203 GSGVATLGL-PDSPGVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 203 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~d---------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+.......+ +...+ ...+.+|+ ++ +++||+++++. ++++++||+||+++++|.+.+++
T Consensus 168 ~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~ 241 (476)
T 3i5t_A 168 GRTGNWPNFDIAQDR------ISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPA 241 (476)
T ss_dssp CCGGGCTTSCCCCTT------EEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred CChhhccccCCCCCC------cEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCH
Confidence 765432211 11111 11222333 22 78999998753 25799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccchhh-ccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----C
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----G 339 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~-~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~ 339 (476)
+||++|+++|++||++||+||||+|| |+|.+++.+ ++++.||++||||++++| +|+|++++++++++.+.+. +
T Consensus 242 ~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~ 321 (476)
T 3i5t_A 242 GYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGS 321 (476)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTC
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccc
Confidence 99999999999999999999999999 999888888 999999999999999999 8999999999999988742 2
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhh
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
.+.+++||++||++|+|++++|+.++++++.++++++++++++.|+++ .+++.+..+++.|+|+++++.++..... .
T Consensus 322 ~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~-~- 398 (476)
T 3i5t_A 322 WFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRAD-G- 398 (476)
T ss_dssp EECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC------C-
T ss_pred cccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccc-c-
Confidence 246778999999999999999999887899999999999999999965 3678888999999999999865321100 0
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|+++++++
T Consensus 399 ~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 399 TAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp CHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00112235678899999999999876 677875 8999999999999999998765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-59 Score=475.21 Aligned_cols=412 Identities=21% Similarity=0.267 Sum_probs=339.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.+++++.++.++++.... +.|.. .+|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 80 (452)
T 3n5m_A 7 KQTDELLAKDEQYVWHGM----RPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80 (452)
T ss_dssp HHHHHHHHHHHHHBCCTT----SCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhhhhccccc----ccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh
Confidence 456778888888876532 11211 248999999999999999999999999999999999999999999999988
Q ss_pred cCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc---c---CCceEEEEeCCCCCCchhHHhhc
Q 011856 131 GTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 131 ~~~--~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
+.. .+++++...+|++++++.++....|+|++||+||++.|+++++.+ + ++++||+++++|||++...+..+
T Consensus 81 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~ 160 (452)
T 3n5m_A 81 LSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160 (452)
T ss_dssp CCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSC
T ss_pred cCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcC
Confidence 532 356789999999999999873323999999999999999998866 6 78999999999999998888887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceeeccCCC---------HHHHHHHHh-cCCCCeEEEEEccc-CCCCCcccCCHHHHH
Q 011856 203 GSGVATLGL-PDSPGVPKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLN 270 (476)
Q Consensus 203 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d---------~~~le~~l~-~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~ 270 (476)
+.......+ |...++........+.+++|| +++||+.++ .+++++++|++||+ +| +|.+.|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~ 239 (452)
T 3n5m_A 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMK 239 (452)
T ss_dssp CCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHH
T ss_pred CchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHH
Confidence 765432211 222222111222334456677 999999997 44457999999999 88 999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC---CCCccccC
Q 011856 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAG 345 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~---~~~~~~~~ 345 (476)
+|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.+ .+...+++
T Consensus 240 ~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (452)
T 3n5m_A 240 AVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHIN 319 (452)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCC
T ss_pred HHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccC
Confidence 9999999999999999999999 999888899999999999999999999 999999999999999864 34556788
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|.|+++++..+.... ..-+..
T Consensus 320 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~----~~~~~~ 395 (452)
T 3n5m_A 320 TFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK----EPIDND 395 (452)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTT----EECCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCccc----CCCCHH
Confidence 9999999999999999988778999999999999999999987788888889999999999986432110 000123
Q ss_pred HHHHHHHHHHHCCeEeccCC------CcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 426 KFARFYRGMLEEGVYFAPSQ------FEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~------~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...++.+.|+++||++.+.+ ...+|+ ++.+|+++|++++++|++++++
T Consensus 396 ~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 396 KIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 44678899999999999876 356777 5899999999999999999865
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-59 Score=474.53 Aligned_cols=395 Identities=24% Similarity=0.338 Sum_probs=329.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEc-CCC--EEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~-dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
.+++.++.++++...... +......|+++++++|+|+||. ||| +||||+++++++++||+||+|.+|+.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 30 PEQIIAVDGAHLWHPYSS----IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHHHHBCCTTCC----SSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccc----ccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH
Confidence 466777777776543321 1001224899999999999999 999 999999999999999999999999999998
Q ss_pred hcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+..+ ..++.+...+|+++|++.++ +.++|+|+|||+||++.|+++++.+ +++++||.++++|||++..++
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhh
Confidence 8543 23578899999999999998 6789999999999999999999887 788899999999999998888
Q ss_pred hhcC-CCCccCCC-CCCCCCCCCCCCceeecc-------CCCHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHH
Q 011856 200 VKAG-SGVATLGL-PDSPGVPKGATYETLTAP-------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFL 269 (476)
Q Consensus 200 ~~~g-~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l 269 (476)
..++ .......+ +...+ ...++ ++|+++|+++++++++++++|++|| +++++|.+.++++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l 257 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAA--------QVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257 (457)
T ss_dssp TTSCCC----------CCC--------CEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHH
T ss_pred cccCCcccccccccCCCCC--------ceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHH
Confidence 7743 21111101 11111 22222 2589999999986555899999999 999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhc--CCCCccccC
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAG 345 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~--~~~~~~~~~ 345 (476)
++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. +.+...+++
T Consensus 258 ~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~ 337 (457)
T 3tfu_A 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGP 337 (457)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCC
T ss_pred HHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEec
Confidence 99999999999999999999999 999988999999999999999999988 69999999999999885 233456889
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
||++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++.++. +
T Consensus 338 t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~----------~-- 404 (457)
T 3tfu_A 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV----------D-- 404 (457)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC----------C--
T ss_pred CCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc----------c--
Confidence 9999999999999999999888999999999999999999875 56777789999999999985421 1
Q ss_pred HHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++.+.|+++||++.+.+ ..+|+ ++.+|++|+++++++|+++++++
T Consensus 405 -~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 405 -LAVATPAALDRGVWLRPFR-NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -HHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999875 45676 47899999999999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-59 Score=474.81 Aligned_cols=416 Identities=31% Similarity=0.486 Sum_probs=324.4
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+++++++++++++++|+|++++.|.|.+ +|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~ 87 (453)
T 2cy8_A 11 TEGSVFWAQRARSVMPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS 87 (453)
T ss_dssp CHHHHHHHHHHHHHSCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHhhcCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHH
Confidence 6788999999999999999888777653 4899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++.+++.++++++++.+++.++|+|++||+||++.|+++||.++++++||+++++|||++...+...+...
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--- 164 (453)
T 2cy8_A 88 HGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHF--- 164 (453)
T ss_dssp TTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred hCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCcc---
Confidence 87667789999999999999998778999999999999999999988888999999999999998887665443200
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
..+...+++.....+++.++++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 165 DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 00111233222233577888899999999997543478999999999888999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHH-hcC
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKE 366 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~-~~~ 366 (476)
+||+.|..+..+++++.||++|+||++++|+|+|++++++++++.+... ....+.+|+++||++++++.++|+. + .
T Consensus 245 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~ 323 (453)
T 2cy8_A 245 SGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E 323 (453)
T ss_dssp TTTTTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H
T ss_pred cccccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h
Confidence 9997677777888999999999999999999999999999999988641 2234677999999999999999998 7 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec-----C-CCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
+++.+++++++++++++|+++..+++....+++.|.|+++++.. . ...++.....++.....++.+.|+++||+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~ 403 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVD 403 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeE
Confidence 78999999999999999998866667766788999999999853 1 00011011112233456788999999999
Q ss_pred eccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 441 ~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.+ .+++++.++++++++++++|+++++++
T Consensus 404 v~~~~--~~~l~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 404 IGGRG--SVFLSAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp CBTTT--EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCC--CEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 97653 367789999999999999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-58 Score=470.76 Aligned_cols=389 Identities=19% Similarity=0.237 Sum_probs=325.8
Q ss_pred CCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-
Q 011856 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP- 153 (476)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~~~~~~~la~~l~~~~~- 153 (476)
.++|+++++++|+|+||.||++||||+++++++++||+||+|++|+.++++++. ..+++++...+|+++|++.++
T Consensus 31 ~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 110 (460)
T 3gju_A 31 ESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPK 110 (460)
T ss_dssp CSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCT
T ss_pred CCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCC
Confidence 445799999999999999999999999999999999999999999999998743 235678899999999999987
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCcee
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETL 226 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 226 (476)
+.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...++ ..+
T Consensus 111 ~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 184 (460)
T 3gju_A 111 GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPV------LHT 184 (460)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTE------EEE
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCC------EEe
Confidence 6789999999999999999999876 678999999999999999998887764432211 111111 112
Q ss_pred eccC----CC------------HHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 227 TAPF----ND------------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 227 ~~~~----~d------------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
.+|+ +| +++||+++++ .++++++|++||+++++|.+.++++||++|+++|++||++||+||||
T Consensus 185 ~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 264 (460)
T 3gju_A 185 EAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVV 264 (460)
T ss_dssp CCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 2222 33 6899998874 23479999999999999999999999999999999999999999999
Q ss_pred cCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHH
Q 011856 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKR 363 (476)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~ 363 (476)
+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+... ....+.+||++||++|++++++|+.
T Consensus 265 ~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 344 (460)
T 3gju_A 265 TGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLEL 344 (460)
T ss_dssp TTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred cCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 999 999888889999999999999999988 7999999999999988521 2556788999999999999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc
Q 011856 364 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~ 443 (476)
++++++.++++++.++++++|.+...+++.+..+++.|.|+++++..+..... ...++.....++.+.|+++||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gv~v~~ 422 (460)
T 3gju_A 345 IDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRV--FFDASQKIGPQVATALAASGVIGRA 422 (460)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccc--cccchHHHHHHHHHHHHHCCeEEec
Confidence 87789999999999999999988877888888999999999999974321110 0012223456788999999999998
Q ss_pred CCC-cceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 444 SQF-EAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 444 ~~~-~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+. ..+|++ +.+|++++++++++|+++++++.
T Consensus 423 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 423 MPQGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 753 567775 89999999999999999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=470.04 Aligned_cols=405 Identities=23% Similarity=0.288 Sum_probs=315.7
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-
Q 011856 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (476)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~- 133 (476)
++.++.++++.... ..++.+...|+++++|+|+|+||.||++||||.++++++++||+||+|.+|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 79 (448)
T 3dod_A 4 DLIEKSKKHLWLPF----TQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS 79 (448)
T ss_dssp HHHHHHHHHBCCTT----CCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCC
T ss_pred HHHHhhhhcccccc----cccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc
Confidence 45556666664322 2222222358999999999999999999999999999999999999999999999988632
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc---cC---CceEEEEeCCCCCCchhHHhhcCC
Q 011856 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGS 204 (476)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~---~~---~~~ii~~~~~yhg~~~~~~~~~g~ 204 (476)
.+++.+...+|++++++.++ +.++|+|+|||+||++.|+++++.+ ++ +++||+++++|||++...+..++.
T Consensus 80 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 80 TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp CCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 34677899999999999997 6789999999999999999999887 77 899999999999999888877665
Q ss_pred CCccCCC-CCCCCCCCCCCCceeeccC----------------CCHHHHHHHHhcCCCCeEEEEEcccC-CCCCcccCCH
Q 011856 205 GVATLGL-PDSPGVPKGATYETLTAPF----------------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKP 266 (476)
Q Consensus 205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~ 266 (476)
......+ |... .+..+|+ +|+++||++++++++++++|++||++ +++|.+.+++
T Consensus 160 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~ 231 (448)
T 3dod_A 160 ELFHHVYGPLMF--------ESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPE 231 (448)
T ss_dssp ---------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCT
T ss_pred ccccccccCCCC--------CceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCH
Confidence 3322111 1111 1222222 35899999998544579999999999 9999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC----CCC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGP 340 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~----~~~ 340 (476)
+|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.+ ...
T Consensus 232 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~ 311 (448)
T 3dod_A 232 GYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT 311 (448)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCc
Confidence 99999999999999999999999999 999888889999999999999999999 599999999999998863 123
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhc
Q 011856 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
..+.+|+++||+++++++++|+.++++++.++++++.+++++.|++ ...++.+..+++.|.|+++++..+..... ..
T Consensus 312 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~- 388 (448)
T 3dod_A 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKE-PY- 388 (448)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTB-CC-
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCccccc-cc-
Confidence 5678899999999999999999887789999999999999999999 66778888899999999999964321100 00
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
........++.+.|+++||++.|.+ ..+|+ ++.+|+++|++++++|+++++++.
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 0011123578899999999999876 67787 789999999999999999998753
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-58 Score=468.03 Aligned_cols=385 Identities=20% Similarity=0.273 Sum_probs=320.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++++. .+.++++...+|++++++.++ +.
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999999999999999999999998843 224678999999999999998 68
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...+ ...+.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 185 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPG------MAHIEQ 185 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSS------EEEECC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCC------CEEeCC
Confidence 99999999999999999998876 478999999999999999988887764432111 11111 112222
Q ss_pred cC----C---C--------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 229 PF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 229 ~~----~---d--------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
|+ + | +++||+++++. ++++++|++||+++++|.+.++++||++|+++|++||++||+||||+||
T Consensus 186 p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 186 PWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 33 2 2 78899988742 2478999999999999999999999999999999999999999999999
Q ss_pred -cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|+|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+.+||++||+++++++++|+.++++++.
T Consensus 266 gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 266 GRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred CcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHH
Confidence 999888889999999999999999977 899999999999998863234557789999999999999999988778999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 371 EYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 371 ~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
++++ ++++++++.|.+...+++.+..+++.|+|+++++..+.... ....++.....++.+.|+++||++.+.+ ..+
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~i 422 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFFRNNLIMRACG-DHI 422 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHHHTTEECEEET-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHHHCCeEEecCC-CEE
Confidence 9999 99999999995444567788899999999999986432110 0011234456788899999999999976 677
Q ss_pred EEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|++ +.+|++++++++++|+++++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 775 8999999999999999998765
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-59 Score=498.97 Aligned_cols=413 Identities=18% Similarity=0.252 Sum_probs=321.6
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCC--EEEEcCCC----EEEecccChhhccCCCC-cHHHHHHHH
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALG 125 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lG~~-~p~v~~a~~ 125 (476)
.+++.++.++++..... ..+.+.. ..|+++++++|. |+||.||| +|||++++|+++++||+ ||+|.+|+.
T Consensus 331 l~~~~~~~~~~~whp~t-~~~~~~~--~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~ 407 (831)
T 4a0g_A 331 LNGMAKLAGEVFWWPFT-QHKLVHQ--ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407 (831)
T ss_dssp HHHHHHHHHHHBCCTTC-CGGGCCG--GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCcc-CcccccC--CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHH
Confidence 34555666666654332 1222221 138899999995 99999999 99999999999999999 999999999
Q ss_pred HHHHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHH-Hhcc--------------CCceEE
Q 011856 126 ETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERII 185 (476)
Q Consensus 126 ~~l~~~~~~---~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~a-r~~~--------------~~~~ii 185 (476)
+|+++..+. ++.++...+|+++|++..| + .++|+|+|||+|||+.|||+| |.++ ++.+||
T Consensus 408 ~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI 487 (831)
T 4a0g_A 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVI 487 (831)
T ss_dssp HHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEE
T ss_pred HHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEE
Confidence 999985432 4568899999999999998 3 689999999999999999999 5553 467899
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCC--CCCCCCC----CCC-----CCCceeecc------------CCC----------
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLG--LPDSPGV----PKG-----ATYETLTAP------------FND---------- 232 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~--~~~~~~~----~~~-----~~~~~~~~~------------~~d---------- 232 (476)
.++++|||.+.+++..++....... .+...+. +.. .....+.+| |++
T Consensus 488 ~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (831)
T 4a0g_A 488 ALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRD 567 (831)
T ss_dssp EETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGG
T ss_pred EecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhccccc
Confidence 9999999999999999886543220 0111000 000 000011122 233
Q ss_pred --------HHHHHHHHhc-----CCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 233 --------VSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 233 --------~~~le~~l~~-----~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
.++|++.|++ +++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+
T Consensus 568 ~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~ 647 (831)
T 4a0g_A 568 ASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVE 647 (831)
T ss_dssp GSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBS
T ss_pred chhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCc
Confidence 2567887763 3568999999997 8999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCC---CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 373 (476)
|+++++|+.||++||||++++| +|+|++++++++++.+.+.. .+.|++||++||++|++++++|+.++++++.+++
T Consensus 648 fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~ 727 (831)
T 4a0g_A 648 TTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNI 727 (831)
T ss_dssp STHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTB
T ss_pred hhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999 79999999999999987532 3568899999999999999999999887788888
Q ss_pred HHHHHHHHH----HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 374 NKITGELTQ----GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 374 ~~~~~~l~~----~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
+++++++++ .+.+...+++.+.++++.|+|+++++..+... ..++.....++.+.|+++||++.|.+ +.+
T Consensus 728 ~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~l 801 (831)
T 4a0g_A 728 TSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVI 801 (831)
T ss_dssp CTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEE
Confidence 777666543 45455566788999999999999999753211 01233455778899999999999876 456
Q ss_pred EE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++ ++.+|++||++++++|+++++++
T Consensus 802 rl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 802 YLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 65 58999999999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-56 Score=449.66 Aligned_cols=390 Identities=21% Similarity=0.312 Sum_probs=314.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
++++++++++.++++..+.. ..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~ 95 (433)
T 1z7d_A 26 LKTPEDYINNELKYGAHNYD----------PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK 95 (433)
T ss_dssp -CCHHHHHHHHHHHBCCCCC----------CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhcccccC----------CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHH
Confidence 34577888888887765321 13889999999999999999999999999889999999999999999998
Q ss_pred hcCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~--~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++.. ..++.+...+|++++++.+ +.++|+|++||+||++.|+++++.+ +++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~ 174 (433)
T 1z7d_A 96 NLTICSRAFFSVPLGICERYLTNLL-GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI 174 (433)
T ss_dssp TCSCCCTTSEEHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------
T ss_pred hCCCccCCcCCHHHHHHHHHHHhhc-CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhh
Confidence 7532 2356788899999999988 5799999999999999999998753 245899999999999987776
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...+.......+ . .....+..+|++|+++|+++++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 175 ~~~g~~~~~~~~--~-----p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 175 SASTTKKCTSNF--G-----PFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred cccCCccccccC--C-----CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 655532111000 0 01124677889999999999962 37899999999999999988999999999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+|| |+|.+++++++++.||++||||++++| +|+|++++++++++.+.+ ..+.+||++||++++++
T Consensus 246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 322 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASIC 322 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHH
T ss_pred CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHH
Confidence 9999999999999 888888888899999999999999999 899999999999988763 34678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
.++|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++.... ....++.+.|+++
T Consensus 323 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 323 VEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHC
Confidence 9999988777899999999999999999875566766778899999999985321 0125788899999
Q ss_pred CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 438 Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
||++.+.+...+|+ ++.+|++|+++++++|+++++++
T Consensus 391 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 391 GLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999876567777 56789999999999999998765
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=448.27 Aligned_cols=388 Identities=23% Similarity=0.342 Sum_probs=323.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
..++++++++.++++..... ..|+++.+++|+++||.||++||||.+++++.++||+||+|.+|+.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~ 106 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNYH----------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 106 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCCC----------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccccC----------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHH
Confidence 44578888888877754321 24899999999999999999999999999889999999999999999998
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++..+ .++.+...++++++++.+ +.++++|++||+||++.++++++.+ .++++||+++++|||++...+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~ 185 (439)
T 2oat_A 107 KLTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185 (439)
T ss_dssp TCSCCCTTSEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH
T ss_pred hcCcccCccCCHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh
Confidence 75322 245667789999999888 5799999999999999999998753 245899999999999988777
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...+.......+ . .....+..+|++|+++|++.++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 186 ~~~g~~~~~~~~--~-----p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 256 (439)
T 2oat_A 186 SSSTDPTSYDGF--G-----PFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH 256 (439)
T ss_dssp TTCCCHHHHTTS--C-----SCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT
T ss_pred hcCCChhcccCC--C-----CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 665532211111 0 01124677889999999999963 37899999999999999999999999999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+|| |+|.+++++++++.||++|+||++++| +|+|++++++++++.+.+ ..+.+||++||++++++
T Consensus 257 gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 333 (439)
T 2oat_A 257 QVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVA 333 (439)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT---TSSCCSSTTCHHHHHHH
T ss_pred CCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCC---CCcccCCCcCHHHHHHH
Confidence 9999999999999 888888888999999999999999999 999999999999988763 44678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
.++|+.++++++.++++++++++++.|+++ .++.+..+++.|+|+++++.... . ....++.+.|+++
T Consensus 334 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~--~---------~~~~~l~~~l~~~ 400 (439)
T 2oat_A 334 IAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK--D---------WDAWKVCLRLRDN 400 (439)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCS--S---------CCHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCc--c---------HHHHHHHHHHHHC
Confidence 999998877889999999999999999876 35556678899999999985421 0 0125788899999
Q ss_pred CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 438 Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
||++.+.+...+|+ ++.+|++|+++++++|++++++
T Consensus 401 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp TEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 99999876667787 6789999999999999999875
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=446.92 Aligned_cols=397 Identities=21% Similarity=0.299 Sum_probs=333.3
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
.++++++++++++.|+.++ +|+++++++|+++||.||++||||.++++++++||+||+|.+++.+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 76 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRF---------FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA 76 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCS---------SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhccCccCCC---------CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 3668899999999887542 4899999999999999999999999999999999999999999999998864
Q ss_pred CC---CCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-
Q 011856 133 SF---GAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (476)
Q Consensus 133 ~~---~~~~~~~~~la~~l~~~~~-~~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (476)
++ .++.+...++++++++.++ +. ++++|++||++|++.++++++.++++++||+++++|||.+..++..++...
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 33 3578899999999999997 56 799999999999999999988888999999999999999988887766532
Q ss_pred -ccCCCCCCCCCCCCCCCceeeccCC----------CHHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 207 -ATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
....+. .....+..+|++ |+++|+++++ .+++++++|++||+++++|.+.++++|+++|++
T Consensus 157 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~ 229 (439)
T 3dxv_A 157 ADAAKAD-------GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFAD 229 (439)
T ss_dssp --------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred hhccccC-------CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 111000 001112334444 6899999994 444579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
+|++||++||+||+|+|| ++|.++..+++++.||++||||++++|+|+||+++++++++.+.+ ..+.+|+ +|+++
T Consensus 230 l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~~ 305 (439)
T 3dxv_A 230 ICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPIS 305 (439)
T ss_dssp HHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHHH
T ss_pred HHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHHH
Confidence 999999999999999999 888878888999999999999999999999999999999988873 3467788 99999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
+++++++|+.++++++.++++++.+++++.|+++...++.+..+++.|.|+++++...... ..++.....++.+.
T Consensus 306 ~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 380 (439)
T 3dxv_A 306 AAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQS-----REPARAETAKLIYR 380 (439)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCCHHHHHHHHHH
Confidence 9999999998877889999999999999999998878888888999999999998643211 12344556788999
Q ss_pred HHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 434 MLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 434 l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|+++||++.+++. ..+|+ ++.+|++++++++++|+++++++
T Consensus 381 l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 381 AYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred HHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 56777 57889999999999999998765
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=438.61 Aligned_cols=410 Identities=22% Similarity=0.295 Sum_probs=329.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.++++++++.+++++.+... + .|+++.+++|+++||.||++||||.+++++.++||+||+|.+|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 74 (433)
T 1zod_A 4 NDDATFWRNARHHLVRYGGT----F-----EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK 74 (433)
T ss_dssp TTCHHHHHHHHHHCCCCSSC----C-----CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhcccccc----c-----CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence 45678888888888754421 1 38889999999999999999999999998889999999999999999987
Q ss_pred cC--CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 131 GT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 131 ~~--~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
+. ..+++.+...++++++++.++ +.++|+|++||+||++.++++++.++++++||+++++|||.+...+..++....
T Consensus 75 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 154 (433)
T 1zod_A 75 LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154 (433)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCC
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccc
Confidence 52 246778889999999999997 689999999999999999998877788889999999999999888876654221
Q ss_pred cCCCCCCCCCCCCCCCceeeccCC---------CHHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
....+...++........+..+++ |+++|++.++++ ++++++|++||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred cccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 100011111100000001112344 389999999752 2478999999999989988889999999999999
Q ss_pred HhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHH
Q 011856 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
+||++||+||+|+|| ++|..++.+++++.||++|+||++++|+|+||+++++++++.+.+. ...+.+|+++|++++++
T Consensus 235 ~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a 313 (433)
T 1zod_A 235 ARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAV 313 (433)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHH
T ss_pred HhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHH
Confidence 999999999999999 8887777788899999999999999999999999999999888642 23345789999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
+.++|+.++++++.+++++++++++++|+++..+++.+..+++.|.|+++++...... ..++.....++.+.|++
T Consensus 314 ~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~ 388 (433)
T 1zod_A 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMN 388 (433)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCChHHHHHHHHHHHH
Confidence 9999998877889999999999999999988666776677889999999988642100 01112234678889999
Q ss_pred CCeEeccCCC----cceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 437 EGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 437 ~Gv~~~~~~~----~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+||++.+++. ..+|+ ++.+|++++++++++|++++++++
T Consensus 389 ~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~~ 433 (433)
T 1zod_A 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL 433 (433)
T ss_dssp TTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999998752 45777 568999999999999999988753
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=433.90 Aligned_cols=367 Identities=24% Similarity=0.276 Sum_probs=320.5
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++++.+ ..++.+...++++++++.+ +.++
T Consensus 17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~ 95 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKAS-ALER 95 (395)
T ss_dssp SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHH-TCSE
T ss_pred CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCe
Confidence 458999999999999999999999999999999999999999999999987532 2357889999999999988 4789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
++|++||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ .....++..++++|
T Consensus 96 v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d 168 (395)
T 3nx3_A 96 VFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPF-------KPLISGVKFAKYND 168 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGG-------CSCCSCEEEECTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCccccccc-------CCCCCCcEEeCCCC
Confidence 999999999999999988777 678999999999999998888776643222111 01123477889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
+++|++.++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++|
T Consensus 169 ~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t 245 (395)
T 3nx3_A 169 ISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT 245 (395)
T ss_dssp HHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE
Confidence 999999986 378999999999999999999999999999999999999999999999 8888888889999999999
Q ss_pred hhhhcCCCCcEEEEEecHHH-HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 312 LGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i-~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+||++++|+|+|++++++++ ++.+. +..+.+|+++|+++++++.++|+.++++++.++++++.+++++.|+++..+
T Consensus 246 ~sK~~~~G~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 246 SAKALGCGLSVGAFVINQKVASNSLE---AGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp ECGGGTTTSCCEEEEECHHHHHHHSC---TTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCceEEEEEchhhhhhhcC---CcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 88886 345678899999999999999998877899999999999999999998877
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
++.+..+++.|.++++++.+.. ...++.+.|+++||++.+++...+|+ ++.+|++++++++++|+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSV-------------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeEEEEEEEEeCCcc-------------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8877788999999999985421 13578889999999999987777888 57889999999999999
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++++
T Consensus 390 ~~l~~ 394 (395)
T 3nx3_A 390 KALKS 394 (395)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-54 Score=436.11 Aligned_cols=385 Identities=22% Similarity=0.283 Sum_probs=304.0
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CC
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.+|+++.+++|+++||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+|++++++.++ +.
T Consensus 10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 89 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPT 89 (430)
T ss_dssp SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTT
T ss_pred CCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999988542 24678899999999999997 67
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
++|+|+|||+||++.++++++.+ +++++||+++++|||++..++...+........ .+.. ...++..+|
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~ 164 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY--TPLM---RPEAWPKLP 164 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------------------CGGGSCEEC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc--CCcC---CCCCceEcC
Confidence 89999999999999999998776 788999999999999988777666543222111 0000 000234445
Q ss_pred CC--------CHHHHHHHHhcCC-CCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 230 FN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 230 ~~--------d~~~le~~l~~~~-~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
++ |+++||+++++.. +++++|++||+++ ++|.+.++++|+++|+++|++||++||+||+|+|| ++|.++
T Consensus 165 ~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~ 244 (430)
T 3i4j_A 165 KPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL 244 (430)
T ss_dssp CCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh
Confidence 44 4589999997532 4789999999999 99999999999999999999999999999999999 998888
Q ss_pred hhhcc-CCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 011856 299 AQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (476)
Q Consensus 299 ~~~~~-g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (476)
+.+++ ++.||++||||++++| +|+||+++++++++.+.+. +.+.+.+|+++|++++++++++|+.++++++.+++++
T Consensus 245 ~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 324 (430)
T 3i4j_A 245 ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKE 324 (430)
T ss_dssp GGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88999 9999999999999999 9999999999999988642 1245778999999999999999998877889999999
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc-c-hHHHHHHHHHHHHCCeEeccC-------CC
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-E-TTKFARFYRGMLEEGVYFAPS-------QF 446 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Gv~~~~~-------~~ 446 (476)
+.+++++.|+++..+++.+..+++.|.|+++++.+.... .+ + .....++.+.|+++||++.++ +.
T Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~ 398 (430)
T 3i4j_A 325 RGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATG------QAFETPGIASRIGAAALKRGLITYPGSGAEPNGRG 398 (430)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC-----------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccccc------CCCccHHHHHHHHHHHHhCCCEEEecccccCCCCC
Confidence 999999999998877888888999999999998531100 00 0 112357889999999999987 23
Q ss_pred cceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 447 EAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 447 ~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..+|++ +.+|++++++++++|++++++++
T Consensus 399 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 399 DHLLLGPPLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456764 56999999999999999998764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=442.43 Aligned_cols=395 Identities=17% Similarity=0.228 Sum_probs=310.9
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
...+++++++++++++++.. ..+ +|+++.+++|+|+||.|||+||||+++++++++||+||+|++|+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~ 91 (472)
T 1ohv_A 22 VPGPRSRELMKQLNIIQNAE---AVH-------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQP 91 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCT---TCC-------CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCG
T ss_pred CCCccHHHHHHHHHhhhccc---ccc-------CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHH
Confidence 34567889999999987542 111 36778999999999999999999999999999999999999999998
Q ss_pred HHh-----cCCCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-----------c---------
Q 011856 128 MKK-----GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T--------- 179 (476)
Q Consensus 128 l~~-----~~~~~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-----------~--------- 179 (476)
+.. ...++. ..+++.+++++|++.++ +.++|+|+|||+||++.|+++++.+ |
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~ 171 (472)
T 1ohv_A 92 QNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMI 171 (472)
T ss_dssp GGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccc
Confidence 643 122322 35778888888888776 6889999999999999999999743 2
Q ss_pred ----C--CceEEEEeCCCCCCchhHHhhcCCCCc-cCCCCCCC----CCCCCCCCceeeccCC------CHHHHHHHHhc
Q 011856 180 ----G--RERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDSP----GVPKGATYETLTAPFN------DVSALENLFEN 242 (476)
Q Consensus 180 ----~--~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~------d~~~le~~l~~ 242 (476)
+ +++||+++++|||++..++..++.... ....+... .++.........+++| |+++|++++++
T Consensus 172 ~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 251 (472)
T 1ohv_A 172 NQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251 (472)
T ss_dssp TCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHh
Confidence 3 589999999999999999888775422 11111100 0110000000011133 68899999975
Q ss_pred CCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCC--Cchhhhhhh-
Q 011856 243 NKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI- 315 (476)
Q Consensus 243 ~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pDi~t~sK~- 315 (476)
+.+ ++++|++||+++++|.+.++++||++|+++|++||++||+||||+|| ++|.+++.+++|+. ||++||||+
T Consensus 252 ~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~ 331 (472)
T 1ohv_A 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM 331 (472)
T ss_dssp HHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGG
T ss_pred cCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEcccc
Confidence 322 68999999999999999999999999999999999999999999999 88887888889987 999999999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HA 394 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 394 (476)
++|| +++ ++++. . ..+..+++|+++||+++++++++|+.+.++++.+++++++++++++|+++..+++ .+
T Consensus 332 l~GG----~~~-~~~~~-~---~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v 402 (472)
T 1ohv_A 332 MTGG----FFH-KEEFR-P---NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI 402 (472)
T ss_dssp SSEE----EEE-CGGGS-C---SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred ccCC----ccC-chhhc-c---cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcE
Confidence 6654 444 66552 1 2255678899999999999999999887788999999999999999998866666 36
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
..+++.|.|+++++.+ ......+.+.|+++||++.+.+...+|+ ++.+|++||++++++|+++++
T Consensus 403 ~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 403 SRVRGRGTFCSFDTPD-------------ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA 469 (472)
T ss_dssp EEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeecCCceEEEEEeCC-------------hhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 6788999999987632 1234678899999999999876567777 788999999999999999987
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 470 ~~ 471 (472)
T 1ohv_A 470 DF 471 (472)
T ss_dssp TC
T ss_pred hc
Confidence 64
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=430.28 Aligned_cols=369 Identities=25% Similarity=0.361 Sum_probs=312.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+++||.||++||||.++++++++||+||+|.+++.+++++... ..++.+...+|++++++++ +.+++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 117 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAERV 117 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 48999999999999999999999999999999999999999999999987532 2357789999999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
+|++||+||++.++++++.+ +++++||+++++|||.+...+...+.......+ |. ..++..+|++
T Consensus 118 ~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 189 (420)
T 2pb2_A 118 LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPK--------PADIIHVPFN 189 (420)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSC--------CSCEEEECTT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCC--------CCCeEEecCC
Confidence 99999999999999988765 566799999999999988877776653221111 11 1246777888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|.+++.+.+++.||++
T Consensus 190 d~~~le~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 99999999973 79999999999988888888999999999999999999999999999 888877778889999999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||||++++|+|+|++++++++++.+.. ..+..|+++|+++++++.++|+.++++++.++++++++++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887763 34667889999999999999999877788999999999999999987555
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
++.+..+++.|+|+++++.... .....++.+.|+++||++.+++.+.+|++ +.++++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6666678889999999885320 00135788899999999998876678875 7899999999999999
Q ss_pred HHHHHhh
Q 011856 469 KVKMRFL 475 (476)
Q Consensus 469 ~~~~~~~ 475 (476)
+++++++
T Consensus 413 ~~l~~~~ 419 (420)
T 2pb2_A 413 QAVGKVV 419 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=432.45 Aligned_cols=366 Identities=21% Similarity=0.281 Sum_probs=307.3
Q ss_pred EEeecCCEEEE-cCCCEEEecccChhhccCCCCcHHHH-H-HHHH---HHHhcCCCC--CCCHHHHHHHHHHHhhCC--C
Q 011856 85 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSFG--APCLLENVLAEMVISAVP--S 154 (476)
Q Consensus 85 ~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~l~~~~~~~--~~~~~~~~la~~l~~~~~--~ 154 (476)
+.+++|+++|| .||++||||.++++++++||+||+|+ + |+.+ +++++.+++ ++.+...++++++++.++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 46999999999 99999999999999999999999999 9 9999 888764433 678889999999999885 6
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHhccC------------CceEEEEeCCCCCCchhHHhhcCC-CCccCCCCCCCCCCCCC
Q 011856 155 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGA 221 (476)
Q Consensus 155 ~e~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 221 (476)
.++|+|++||+||++.|+++++.+++ +++||+++++|||++..++..++. ......+.. .
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~ 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPK-------F 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCC-------C
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCC-------C
Confidence 78999999999999999999887654 789999999999999888777664 111111100 1
Q ss_pred CCceeeccCCC--H-------------HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 222 TYETLTAPFND--V-------------SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 222 ~~~~~~~~~~d--~-------------~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
..++..+|++| . ++|++.++++.+++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 271 (449)
T 2cjg_A 192 DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271 (449)
T ss_dssp CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 12356666666 3 34888887544589999999999999998999999999999999999999999
Q ss_pred ccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHH
Q 011856 287 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKR 363 (476)
Q Consensus 287 Ev~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~ 363 (476)
|+|+|| |+|.+++++++++.||++|+||++ |+|++++++++++.+.+ ..+..+.+|+++|+++++++.++|+.
T Consensus 272 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~ 347 (449)
T 2cjg_A 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV 347 (449)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred ccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 999999 988887888899999999999999 89999999999886432 12345678999999999999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec
Q 011856 364 LKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 442 (476)
++++++.+++++++++++++|+++..+++. +..+++.|+|+++++.. .....++.+.|+++||++.
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v~ 414 (449)
T 2cjg_A 348 IEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIVL 414 (449)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEEe
Confidence 877789999999999999999998666775 66788999999988742 1223578889999999999
Q ss_pred cCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 443 PSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 443 ~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++...+|+ ++.+|+++|++++++|+++++++
T Consensus 415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 987677787 67899999999999999998875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-51 Score=417.39 Aligned_cols=379 Identities=22% Similarity=0.295 Sum_probs=309.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~-~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+++||.||++|||+.++++++++||+||+|.+|+.+++++.. .+ +++.+...++++++++.++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3889999999999999999999999999999999999999999999998742 23 5678889999999999987 678
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeecc
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 229 (476)
+|+|++||++|++.++++++.++ ++++||+++++|||.+...+...+.......+ |...++ ..+.+|
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~------~~v~~~ 185 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDV------DHLPHT 185 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSE------EEECCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCC------eEecCC
Confidence 99999999999999999887654 67899999999999988777766542211100 000111 011111
Q ss_pred C--------CC--------HHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 230 F--------ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 230 ~--------~d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
. -| +++|++.+++++ +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 1 14 899999997532 478999999999989999999999999999999999999999999999
Q ss_pred -cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC------CCccccCCCCCcHHHHHHHHHHHHHh
Q 011856 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRL 364 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~------~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (476)
++|..+..+++++.||++|+||++++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.+
T Consensus 266 g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 888777778889999999999999988 9999999999999988642 12245678999999999999999988
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 365 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
+++++.+++++++++++++|+++ .+++.+..+++.|.++++++...... ......++.+.|+++||++.++
T Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~Gv~v~~~ 416 (449)
T 3a8u_X 346 QKENLVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGD--------AIVRPFEAGMALWKAGFYVRFG 416 (449)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTB--------SSHHHHHHHHHHHHHTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCccc--------ccccHHHHHHHHHHCCcEEecC
Confidence 77789999999999999999874 34566667788999999998542100 0001235788888999999987
Q ss_pred CCcceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 445 QFEAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 445 ~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+ ..+|++ +.+|++++++++++|++++++++
T Consensus 417 g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~~ 448 (449)
T 3a8u_X 417 G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKLL 448 (449)
T ss_dssp T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 6 678886 78999999999999999998754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=403.17 Aligned_cols=379 Identities=26% Similarity=0.373 Sum_probs=302.6
Q ss_pred HHHHHHHHhhh-CCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCC-cHHHHHHHHHHHHh
Q 011856 53 SEEAFNVAKEL-MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK 130 (476)
Q Consensus 53 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~ 130 (476)
++++.++..++ +..+... | .+|+++.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~ 74 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP----E----LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS----C----CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhccccccc----c----CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh
Confidence 45666776666 5443321 1 1488999999999999999999999999998999998 99999999999987
Q ss_pred cCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC
Q 011856 131 GTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205 (476)
Q Consensus 131 ~~~~---~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~ 205 (476)
...+ .++.+...++++++++.++ + .++|+|++||+||++.++++++.++ +++||+++++|||.+...+...+..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 75 LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred CccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5432 3678889999999999997 3 6799999999999999999887666 7899999999999998888776642
Q ss_pred -CccCCC-CCCCCCCCCCCCceeeccCC---------------------CHHHHH-HHHhcCC--CCeEEEEEcccCCCC
Q 011856 206 -VATLGL-PDSPGVPKGATYETLTAPFN---------------------DVSALE-NLFENNK--GEIAAIILEPVVGNS 259 (476)
Q Consensus 206 -~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~a~vi~ep~~~~~ 259 (476)
.....+ +. ...+..+|++ |+++|+ +.++++. +++++|++||+++++
T Consensus 154 ~~~~~~~~~~--------~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~t 225 (419)
T 2eo5_A 154 AVQRSIVGPF--------MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEG 225 (419)
T ss_dssp GGGGCSSCCC--------CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTT
T ss_pred cccccccCCC--------CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCC
Confidence 111111 10 0123333332 367888 8887421 368999999998889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~ 337 (476)
|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+++++.||++||||++++| +|+||++++++++ .+ .
T Consensus 226 G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~ 303 (419)
T 2eo5_A 226 GYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P 303 (419)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C
Confidence 988889999999999999999999999999999 888767778889999999999999999 9999999999887 55 2
Q ss_pred CCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCch
Q 011856 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
..+.+|+++|+++++++.++|+.+++ +.++++++++++.+.|+++ ...+++.|+|+++++..
T Consensus 304 ---~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------- 365 (419)
T 2eo5_A 304 ---GMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------- 365 (419)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------
T ss_pred ---cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------
Confidence 24567899999999999999997754 8888999999998888664 34567889999888731
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+..... +.+.|+++||++.+++...+|+ ++.+|++++++++++|+++++++
T Consensus 366 -----~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 366 -----KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp -----HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 112235 8888999999999976567888 56899999999999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=399.32 Aligned_cols=369 Identities=26% Similarity=0.367 Sum_probs=318.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+++||.||++||||.++++++++||+||++.+++.+++++... ..++.+...++++++++++ +.+++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~v 99 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CCCeE
Confidence 58999999999999999999999999999999999999999999999987432 3467888999999999999 56799
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||++|++.++++++.+ +++++||+.+++||+.....+...+.......+. ....++..+|++|
T Consensus 100 ~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 172 (406)
T 4adb_A 100 FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA-------PLPADIRHAAYND 172 (406)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC-------SCCSSEEEECTTC
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC-------CCCCCceEeCCCc
Confidence 99999999999999987655 6779999999999999888887776543221111 1123577788999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
+++|++.++ +++++|+++|+++++|.+.++.+++++|.++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t 249 (406)
T 4adb_A 173 INSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT 249 (406)
T ss_dssp HHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE
Confidence 999999886 379999999999989888888889999999999999999999999999 8888777888899999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+|++++++++++.+. +..+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 250 TAKALGGGFPVGALLATEECARVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp ECGGGGTTSCCEEEEECHHHHHTCC---TTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCCCeEEEEEcHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887 3446678899999999999999988778889999999999999999987667
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+.+.++++.|.++++.+..... ....++.+.|+++||++.+++...+|+ ++.++++++++++++|++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYA-----------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTT-----------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCcH-----------HHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7777888899999999864210 113578899999999999987778888 688999999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 396 ~l~~~ 400 (406)
T 4adb_A 396 ACEHF 400 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=400.11 Aligned_cols=401 Identities=27% Similarity=0.423 Sum_probs=322.1
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
+++++.++..++++.++... +|+++.+++|+++||.||++||||.++.++.++||++|++.+++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 73 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHhcCcccccc---------CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC
Confidence 46778889999998776432 388999999999999999999999999888899999999999999998764
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 132 TS---FGAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~-~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
.. .+++.+...+|++.+++++++ . ++|+|++||++|++.++++++.++++++|++++++||+.....+...+...
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcc
Confidence 22 235678889999999999953 4 899999999999999999888787777999999999999887776655421
Q ss_pred ccCCCCCCCCCCCCCCCceeeccC-----C-----CHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPF-----N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-----d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
.. ..++. .....+..+|+ + |+++|++.+++ +++++++|+++|+++|+|.+.++++++++|.+
T Consensus 154 ~~-----~~~~~-~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~ 227 (426)
T 1sff_A 154 PY-----SAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRA 227 (426)
T ss_dssp TT-----TTTSC-CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHH
T ss_pred cc-----ccccC-CCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 00 00000 00011222332 2 68899998874 12368999999998889988899999999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
+|++||++||+||+|+|| +.|..+..+.+++.||+++|||++++|+|+||+++++++++.+.. ..+..|++.|+++
T Consensus 228 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~~ 304 (426)
T 1sff_A 228 LCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPIA 304 (426)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHHH
T ss_pred HHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHHH
Confidence 999999999999999999 877766677888899999999999999999999999999887763 3356788999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
++++.++|+.++++++.+++++++++++++|+++...++.+..+++.|.++++++..... ...|+.....++.+.
T Consensus 305 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ 379 (426)
T 1sff_A 305 CVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HNKPDAKLTAEIVAR 379 (426)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC-----TTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHH
Confidence 999999999887778999999999999999998765566556677789999999853110 011223345678889
Q ss_pred HHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 434 MLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 434 l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
|+++||++.++. ...+|++ +.++++++++++++|+++++++.
T Consensus 380 l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 380 ARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999876 3567875 47899999999999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=397.10 Aligned_cols=360 Identities=25% Similarity=0.346 Sum_probs=307.6
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
+|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++... ..++.+...++++++++.+ +.+++
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 96 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-NKEMV 96 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCEE
Confidence 58999999999999999999999999999999999999999999999987432 2245677889999999988 58999
Q ss_pred EEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||++|++.++++++.. +++++|++.+++|||.+..++...+.......+ .....++..+++
T Consensus 97 ~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 169 (392)
T 3ruy_A 97 LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF-------GPMLPGIIVIPY 169 (392)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC-------CSCCSSEEEECT
T ss_pred EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc-------CCCCCCCeeeCc
Confidence 99999999999999988766 567899999999999998888776653322111 011123667888
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi 309 (476)
+|+++|+++++ +++++|++++++|++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+..+.+++.||+
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 246 (392)
T 3ruy_A 170 GDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246 (392)
T ss_dssp TCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred ccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCE
Confidence 99999999997 379999999999999999999999999999999999999999999999 88887788888999999
Q ss_pred hhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 310 ~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+||||++++| +|+|++++++++++.+. ...+..+++.|+++++++.++|+.++.+++.++++++.+++++.|+++.
T Consensus 247 ~~~SK~l~gG~~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (392)
T 3ruy_A 247 YILGKALGGGVFPISCAAANRDILGVFE---PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID 323 (392)
T ss_dssp EEECGGGGTTTSCCEEEEECHHHHTTCC---TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEchhhhCChhhhEEEEECHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999988876 3446678899999999999999988768899999999999999988752
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~ 466 (476)
.+....+++.|.++++.+... ..++.+.|+++||++.+++...+|++ +.+|++++++++++
T Consensus 324 --~~~~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 324 --NPMITEVRGKGLFIGIELNEP---------------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp --CTTEEEEEEETTEEEEEESSC---------------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred --CCCceEEEeeeeEEEEEEcch---------------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 245566778899999987431 15788899999999999877778886 78899999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 387 l~~~l 391 (392)
T 3ruy_A 387 IKAVL 391 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=401.42 Aligned_cols=372 Identities=25% Similarity=0.328 Sum_probs=301.9
Q ss_pred CeE-EEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011856 82 PIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 82 p~~-~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~e 156 (476)
|++ +.+++|+++||.||++|+|+.++++++++||++|+|++|+.+++++... .+++.+...+++++++++++ +.+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 555 9999999999999999999999999999999999999999999987432 24567888999999999997 789
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccC-----CceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCceeecc
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP 229 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 229 (476)
+|+|++||+||++.++++++.+++ +++||+++++||++....+...+... ....+ +...++ ..+.++
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 178 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPAP 178 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCCC
Confidence 999999999999999998776554 78999999999998887766554321 00000 000010 111111
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 230 ---------FNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
..|+++|++.++++++++++|++||+ ++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 179 QSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp CSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence 24789999999754457899999999 8889998889999999999999999999999999999 888766
Q ss_pred hhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 011856 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (476)
..+++++.||++|+||++++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.++++++.+++++
T Consensus 259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778889999999999999999 9999999999999888642 1123567899999999999999998877788899999
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--C
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--L 453 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~ 453 (476)
++++++++|+++.. ++....+++.|.++++++... . + ..++.+.|+++||++.+.+ ..+|++ +
T Consensus 339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-~---------~---~~~l~~~l~~~Gi~v~~~~-~~iRis~~~ 403 (429)
T 1s0a_A 339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-V---------N---MAALQKFFVEQGVWIRPFG-KLIYLMPPY 403 (429)
T ss_dssp HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-B---------C---HHHHHHHHHHTTEECCCBT-TEEEECCCT
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-c---------c---HHHHHHHHHHCCCEEeccC-CEEEEECCC
Confidence 99999999987632 444555778899999987431 0 1 2467888899999999864 567876 7
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|++++++++++|+++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSG
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999987654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=378.00 Aligned_cols=365 Identities=26% Similarity=0.352 Sum_probs=302.1
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
.+|+++.+++|+++||.||++|+||.++++++++||++|++.+++.+++++... ..++.+...++++++++++ +.++
T Consensus 21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~ 99 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNT-FGGK 99 (397)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTT-TSCE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhc-CCCe
Confidence 459999999999999999999999999999999999999999999999987432 2246688899999999998 5789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
++|++||++|++.+++.++.+ +++++||+++++||+.+...+...|.......+ |. ..++..+|++
T Consensus 100 v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 171 (397)
T 2ord_A 100 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPL--------VPGFEYFEFN 171 (397)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSC--------CTTEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCC--------CCCeeEecCC
Confidence 999999999999999976544 467789999999999888666665542111000 11 1236777888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.++..||++
T Consensus 172 d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 248 (397)
T 2ord_A 172 NVEDLRRKMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL 248 (397)
T ss_dssp CHHHHHHHCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee
Confidence 99999999863 78999999999999986677788999999999999999999999999 777666566778889999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||||++++|+|+|+++++++++ .+. ...+..+++.|+++++++.++|+.++++++.++++++++++.+.|+++...
T Consensus 249 s~sK~~~~G~r~G~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (397)
T 2ord_A 249 TTAKGLGGGVPIGAVIVNERAN-VLE---PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 324 (397)
T ss_dssp EECGGGGTTSCCEEEEECSTTC-CCC---TTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCeEEEEEchHhc-ccC---CCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998876 554 234566888999999999999998877789999999999999999887544
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
++....+++.|.++++.+.... ...++.+.|+++||++.+++...+|++ +.++++++++++++|+
T Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~ 391 (397)
T 2ord_A 325 YDVVADVRGMGLMIGIQFREEV-------------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391 (397)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEeEEEEEEECChH-------------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 5655556788999998875310 125788899999999998866678886 6789999999999999
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++++
T Consensus 392 ~~l~~ 396 (397)
T 2ord_A 392 KVLQG 396 (397)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=368.22 Aligned_cols=360 Identities=30% Similarity=0.431 Sum_probs=297.7
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
.|+++.+++|+++||.+|++|+||.++.+++++||.+|.+.+++.+++++.... .++.+...+++++++++++ +.++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 106 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNR 106 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEE
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCE
Confidence 588999999999999999999999999888999999999999999999874321 2467889999999999986 6789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
+++++||++|++.+++.++.++++++||+++++||+.....+...|....... .|. ..++..++++|+++|
T Consensus 107 v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~~l 178 (395)
T 1vef_A 107 VFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVEAL 178 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHHHH
Confidence 99999999999999997665567889999999999988766665554321100 011 123556677899999
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~ 315 (476)
++.+++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+.+++.+|+++|||.
T Consensus 179 ~~~i~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~ 255 (395)
T 1vef_A 179 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKA 255 (395)
T ss_dssp HHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred HHHhcc---CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEccc
Confidence 999973 68999999999889999899999999999999999999999999999 77766566777888999999999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
+++|+|+|++++++++++.+.. ..+..+++.|+++++++.++|+.+.++++.++++++.+++++.|+++.. +...
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 330 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PKIR 330 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TTEE
T ss_pred ccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--CceE
Confidence 9999999999999999888763 2345678899999999999999876667889999999999999887532 3334
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
.+++.|.++++.+..+ ..++.+.|+ ++||++.+++...+|++ +.++++++++++++|++++
T Consensus 331 ~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 331 EVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4667888999887421 156788888 99999998766678884 5789999999999999876
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=348.00 Aligned_cols=355 Identities=27% Similarity=0.387 Sum_probs=288.9
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
.+|+++.+++|+++||.+|+.|+||.++...+.+||.+|.+.+++.+++++.. ...++.....+++++++++++-+++
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~ 88 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK 88 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEE
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCe
Confidence 35899999999999999999999999998878999999999999999997642 2245677788999999999842389
Q ss_pred EEEeCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 158 VRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
+++++||++|++.++++++.++ ++++|++.+++||+....+....+..+..... |. ..++..++++
T Consensus 89 v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 160 (375)
T 2eh6_A 89 VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL--------VPGFSYAKLN 160 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC--------CSSEEEECTT
T ss_pred EEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC--------CCCceeCCCc
Confidence 9999999999999999765554 44889999999999887776665543211000 11 1236667778
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++| +.+..+..+.++..+|++
T Consensus 161 d~~~l~~~l~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 161 DIDSVYKLLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp CHHHHHTTCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred hHHHHHHHhcC---CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 99999998863 68999999999999999899999999999999999999999999988 666545556778789999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
++||.+++|+|+|++++++++++.+.+ ..+..+++.++++++++.++|+.++ ++.++++++.+++.+.|+++.
T Consensus 238 s~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-- 310 (375)
T 2eh6_A 238 ALAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG-- 310 (375)
T ss_dssp EECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT--
T ss_pred EEcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999998887763 2345677889999999999998775 678888889999988887752
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
. ..+++.|.++++.+..+ ..++.+.|+++||.+.+++...+|++ ..++++++++++++|+
T Consensus 311 --~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 311 --K-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp --S-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --c-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 34567888988887421 14678888999999998766678886 5789999999999998
Q ss_pred HH
Q 011856 469 KV 470 (476)
Q Consensus 469 ~~ 470 (476)
++
T Consensus 373 ~~ 374 (375)
T 2eh6_A 373 EI 374 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=331.30 Aligned_cols=366 Identities=19% Similarity=0.198 Sum_probs=285.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEE-eecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGE 126 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~-~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~ 126 (476)
.+.+++++.++.+++.+.|+. +| .+.++. +++|+++|| ||++||||.++ +++| +.+|++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~g~~--~r-------~~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~ 89 (427)
T 2w8t_A 23 LLSKFDGLIAERQKLLDSGVT--DP-------FAIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKE 89 (427)
T ss_dssp TTGGGHHHHHHHHHHHHTTCC--CT-------TCCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCc--ce-------eeeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHH
Confidence 355778899999999998843 22 134667 999999999 99999999999 6899 589999999999
Q ss_pred HHHh-cCCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 127 TMKK-GTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 127 ~l~~-~~~~~------~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++.+ +..++ ++.+...+|++.+++++ +.+++++++||++|++.+++. ++++++.|+++..+|+.+...+
T Consensus 90 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~al~~---l~~~gd~vl~~~~~h~~~~~~~ 165 (427)
T 2w8t_A 90 ALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GTTGAIVFSTGYMANLGIIST---LAGKGEYVILDADSHASIYDGC 165 (427)
T ss_dssp HHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHH---HSCTTCEEEEETTCCHHHHHHH
T ss_pred HHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CCCceEEecCcHHHHHHHHHH---hcCCCCEEEECCcccHHHHHHH
Confidence 9987 43222 14678889999999988 567889999999999999884 4566666777777887666555
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (476)
...|. +++.++++|+++|++++++..+ ++++|+++++++++|.+.+ +++|+++|++
T Consensus 166 ~~~g~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~ 222 (427)
T 2w8t_A 166 QQGNA-------------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK 222 (427)
T ss_dssp HHSCS-------------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred HHcCC-------------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence 44432 3566778899999999986543 6899999999999999998 9999999999
Q ss_pred hCCEEEEeccccCcccc--ccchhhccCCCCc----hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHH
Q 011856 279 NGALLIFDEVMTGFRLA--YGGAQEYFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (476)
Q Consensus 279 ~g~llI~DEv~~g~r~g--~~~~~~~~g~~pD----i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~ 352 (476)
||++||+||+|+++..+ ..+..+++++.+| +.|+||++| ++.||+++++++++.+.+....+.. +.+.|++
T Consensus 223 ~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~-~~~~~~~ 299 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIF-TASLPPS 299 (427)
T ss_dssp TTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHS-SCCCCHH
T ss_pred cCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccc-cCCCCHH
Confidence 99999999999876222 2345566787766 558999996 4669999999999988753222222 5578899
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHH
Q 011856 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (476)
Q Consensus 353 ~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (476)
.++++.++|+.++. ++.+++++++++++++.|+++ ++.....+ .|.++++.+.+ .....++
T Consensus 300 ~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~l 362 (427)
T 2w8t_A 300 VVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLED-------------QEQAAMM 362 (427)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEESS-------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEECC-------------HHHHHHH
Confidence 99999999998876 678899999999999999886 22221133 67788887732 2335678
Q ss_pred HHHHHHCCeEeccCCC-------cceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 431 YRGMLEEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 431 ~~~l~~~Gv~~~~~~~-------~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.|+++||++.++.. ..+|+++. +|++++++++++|+++++++
T Consensus 363 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 363 WQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp HHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999987643 35677544 69999999999999998765
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=325.38 Aligned_cols=356 Identities=11% Similarity=0.009 Sum_probs=257.9
Q ss_pred cCCCCeEEEeecCCEEEEcC--CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC
Q 011856 78 VGGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP 153 (476)
Q Consensus 78 ~~~~p~~~~~~~G~~~~d~d--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~ 153 (476)
+++.+++..+++|+++||.+ |++||||..+ ++..+.+|+|.+|+.++++++. .|. ...++..++++++.+.++
T Consensus 38 y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g 114 (421)
T 3l8a_A 38 YDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHD 114 (421)
T ss_dssp CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHC
T ss_pred ccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhC
Confidence 44457888999999999999 8999999877 5555689999999999998743 222 236778889999888764
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 ---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
..++|+|++||+||++.+++.+ ...+++|++..++||+....+.. .|..+...++....+ .+.
T Consensus 115 ~~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~-~g~~~~~~~~~~~~~--------~~~--- 180 (421)
T 3l8a_A 115 YAVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIRL-NDHRLVENSLQIING--------RFE--- 180 (421)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHH-TTEEEEEEECEEETT--------EEE---
T ss_pred CCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHH-CCCEEEeccccccCC--------Cee---
Confidence 5789999999999999999963 33457899999999996554433 333222111100000 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hh-----hcc
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ-----EYF 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~-----~~~ 303 (476)
.|+++|++.+++ +++++|+++++++++|.++ +++++++|+++|++||++||+||+|++| ++|... .. +..
T Consensus 181 ~d~~~le~~i~~--~~~~~vil~~p~nptG~~~-~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 257 (421)
T 3l8a_A 181 IDFEQLEKDIID--NNVKIYLLCSPHNPGGRVW-DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYK 257 (421)
T ss_dssp CCHHHHHHHHHH--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGG
T ss_pred eCHHHHHHHhhc--cCCeEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhc
Confidence 289999999974 2688999999999999665 4555999999999999999999999999 766421 11 223
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCcc-ccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (476)
+..+++.++||+++ +|+|+|+++++ +++++.+.. .. ..+++++|+++++++.++++..++ ++..++++++.+
T Consensus 258 ~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~---~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 258 DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQY---RQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp GTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH---HHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHH---HHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44466779999998 79999999998 889888763 22 334568899999999999985332 445555666666
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEE-EEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFG-FFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGF 450 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~ 450 (476)
++++.|++. +.+..+++.|.++. +++...... ..++.+.|++ +||++.++. ...+|
T Consensus 335 ~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iR 398 (421)
T 3l8a_A 335 LVIKELEAK----TKIKVMEPEGTYLVWLDFSAYAIA------------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFAR 398 (421)
T ss_dssp HHHHHHHHH----CSCEEECCSBSSEEEEECGGGTCC------------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhC----CCceEeCCCeeEEEEEeccccCCC------------HHHHHHHHHHhCCEEEECchhhCCCCCCEEE
Confidence 666666554 33445566666655 766431100 1467788875 599998742 35689
Q ss_pred EeCCCcHHHHHHHHHHHHHHHH
Q 011856 451 TSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+++.+++++|++++++|+++++
T Consensus 399 i~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 399 LNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EECCSCHHHHHHHHHHHHHHC-
T ss_pred EEecCCHHHHHHHHHHHHHHHh
Confidence 9888999999999999998865
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=302.99 Aligned_cols=342 Identities=17% Similarity=0.248 Sum_probs=264.3
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~ 153 (476)
+.++.+++|+++|| ||++||||.++ +++| +++|++.+++.+++.+. ... ....+...++++++++++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~- 101 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL- 101 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-
Confidence 67788999999999 99999999999 8899 68999999999998872 111 124577889999999988
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|+
T Consensus 102 ~~~~~i~~~sGt~a~~~~l~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 102 GTDDTILYSSCFDANGGLFE---TLLGPEDAIISDELNHASIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp TCSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred CCCcEEEECchHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 44567777889999999988 4455555666666677655555444332 3556667789
Q ss_pred HHHHHHHhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCC--C
Q 011856 234 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (476)
Q Consensus 234 ~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (476)
++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ ........+.+++ .
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADR 235 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTC
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCC
Confidence 999999975332 6899999999999999998 999999999999999999999 576 3222234566676 7
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~~~~~~~~l~~ 382 (476)
+|++ ++||.++ |++.||+++++++++.+......+.. +.+.+++.++++.++++.+ +. ++..++++++.+++.+
T Consensus 236 ~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 313 (399)
T 3tqx_A 236 VDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLF-SNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRA 313 (399)
T ss_dssp CSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHS-SCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceec-cCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7887 8999998 78889999999999888642222222 4467899999999999987 43 6788889999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeC--
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL-- 453 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~-- 453 (476)
.|+++. ..+ +++.|.++++.+.. .....++.+.|+++||++.++.+ ..+|+++
T Consensus 314 ~L~~~g--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 375 (399)
T 3tqx_A 314 GMEKLG--FQL---VPGNHPIIPVMLGD-------------AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSA 375 (399)
T ss_dssp HHHHHT--CCB---CCCSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCT
T ss_pred HHHHcC--CCc---CCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeec
Confidence 998872 221 25678888887742 23346888999999999986532 3567765
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++++++++++|+++++++
T Consensus 376 ~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 376 VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=294.92 Aligned_cols=343 Identities=19% Similarity=0.256 Sum_probs=260.4
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCCC---C---CCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG---A---PCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~~---~---~~~~~~~la~~l~~~~ 152 (476)
+|.++.+++|+++||.||++||||.++ +++|+ .+|++.+++.+++.+ +..++ + ..+...++++.+++++
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 378899999999999999999999999 78997 899999999999876 33221 1 2567788999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+ .++.++++||++|++.+++. +.++++.|++...+|+.....+...|. +++.++.+|
T Consensus 104 g-~~~~i~~~sGs~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 G-MEDAILYSSCFDANGGLFET---LLGAEDAIISDALNHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp T-CSEEEEESCHHHHHHTTHHH---HCCTTCEEEEETTCCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCChHHHHHHHHHH---HcCCCCEEEEcchhHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 4 44677888899999999884 455555666666677655444333332 345566679
Q ss_pred HHHHHHHHhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-c-ccccchhhccCCC
Q 011856 233 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-R-LAYGGAQEYFGVT 306 (476)
Q Consensus 233 ~~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r-~g~~~~~~~~g~~ 306 (476)
+++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ . .+..+ .+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999999875221 5788999999899999998 999999999999999999999 588 3 44432 3445655
Q ss_pred C--chh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 011856 307 P--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 307 p--Di~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~ 381 (476)
+ |++ ++||.++++. .|++++++++++.+...... ...+++.|+++++++.++|+.+.+ +++.++++++.+++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4 666 7999996554 59999999999887632111 222567899999999999998765 678888999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeCC
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 454 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~~ 454 (476)
+.|+++ ...+ +++.|.++++.+.+ .....++.+.|+++||++.++.. ..+|+++.
T Consensus 314 ~~L~~~--g~~~---~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA--GFTL---AGADHAIIPVMLGD-------------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT--TCCB---CCSSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc--CCcc---cCCCCCEEEEEcCC-------------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 998875 2222 24678888888742 12346788899999999987642 24777654
Q ss_pred --CcHHHHHHHHHHHHHHHHHh
Q 011856 455 --HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 --~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=291.21 Aligned_cols=356 Identities=12% Similarity=0.084 Sum_probs=253.6
Q ss_pred eEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC---CCCe
Q 011856 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP---SIEM 157 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~~la~~l~~~~~---~~e~ 157 (476)
++..+++|+++||.+|++||||..+ ++....+|.|.+++.+++.++. .|+. ..+++.++++++.+.++ +.++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6677999999999999999999987 5555589999999999998742 2222 45677888888887653 4789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
+++++||++|++.+++.. ..+++.|++.+++||+....+ ...|..+...+.....+ ... .|+++|+
T Consensus 88 i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~ 153 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSVI-EGNGRRVISSDLIYENS--------KYS---VNWADLE 153 (391)
T ss_dssp EEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHHHH
T ss_pred EEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHH-HHcCCEEEEeeeeecCC--------cee---ecHHHHH
Confidence 999999999999999963 345678888888998854433 33444332211100011 000 2899999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCC-CCc----hh
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD----LT 310 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~-~pD----i~ 310 (476)
+.+++. ++++|+++.+++++|.+.+..+ +++|.++|++||++||+||+|+++ +.|. ......++. .+| +.
T Consensus 154 ~~l~~~--~~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~ 230 (391)
T 3dzz_A 154 EKLATP--SVRMMVFCNPHNPIGYAWSEEE-VKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230 (391)
T ss_dssp HHHTST--TEEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred HHHhcc--CceEEEEECCCCCCCcccCHHH-HHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence 999742 6788877777888888776444 999999999999999999999988 6653 233333332 267 44
Q ss_pred hhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 311 TLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 311 t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
++||.++ +|+|+|+++++ +++++.+... ....++++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 231 SPSKTFNLAALHAACAIIPNPDLRARAEES--FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp CSHHHHTCTTTCCEEEECCSHHHHHHHHHH--HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccccchhheEEEECCHHHHHHHHHH--HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999998 89999999997 8888887631 11234567899999999999876321 45556666667777777665
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHH
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDD 459 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~ 459 (476)
... ++....+..+.++++.+.... ....++.+.|+ ++||++.++. ...+|+++.+++++
T Consensus 309 ~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~ 374 (391)
T 3dzz_A 309 EVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374 (391)
T ss_dssp HCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHH
T ss_pred hCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHH
Confidence 311 222222233444556664211 01357888886 8999998753 24578988899999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 375 i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 375 VIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=293.09 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=243.1
Q ss_pred EEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---CCCeE
Q 011856 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SIEMV 158 (476)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~---~~e~v 158 (476)
...+++|+++||.||++||||.++. +.++ .+|+|.+++.+++.++. .|. ...+++.++++++.+.++ +.+++
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3458999999999999999999883 3343 79999999999998732 222 125677788888775542 46899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++||++|++.+++.. ..+++.|++..++||++...+ ...|..+...+... + .|+++|++
T Consensus 85 ~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~--~--------------~d~~~l~~ 145 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHLL-SATQREGIFIDATG--G--------------INLHDVEK 145 (377)
T ss_dssp EEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHHH-HHHTCCEEEEECTT--S--------------CCHHHHHH
T ss_pred EEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHH-HHcCCEEEEccCCC--C--------------CCHHHHHH
Confidence 99999999999999953 345678999999999865443 33344322211110 0 28999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-c-c---chhhccCCCCchhhh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-G---GAQEYFGVTPDLTTL 312 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~---~~~~~~g~~pDi~t~ 312 (476)
.++++ +++++++.++|++|.+.+.++ +++|+++|++||++||+||+|+++ +.+ . . ......+..+++.++
T Consensus 146 ~l~~~---~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 221 (377)
T 3fdb_A 146 GFQAG---ARSILLCNPYNPLGMVFAPEW-LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAP 221 (377)
T ss_dssp HHHTT---CCEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECS
T ss_pred HhccC---CCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeC
Confidence 99853 445555555777888776544 999999999999999999999988 655 1 1 111122233456689
Q ss_pred hhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHh
Q 011856 313 GKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 313 sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
||.+| +|+|+||+++ ++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++..
T Consensus 222 sK~~g~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 222 SKAWNIAGLKCAQIIFSNPSDAEHWQQ---LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp TTTTTCGGGCCEEEECCSHHHHHHHHH---SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHhccCcchhheEEEeCCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99997 7999998865 7888888763 33445678899999999999885422 4556666677777777776642
Q ss_pred hhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHH
Q 011856 389 KKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 389 ~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i 460 (476)
+......+.+. ++++.+...... .++...|+++ ||++.++. ...+|+++..+++++
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i 362 (377)
T 3fdb_A 299 ---PGAKITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVL 362 (377)
T ss_dssp ---TTCEECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ---CCceEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHH
Confidence 21222334444 446766432110 2456667665 99998763 346789888899999
Q ss_pred HHHHHHHHHHHHHh
Q 011856 461 QHTITAAEKVKMRF 474 (476)
Q Consensus 461 ~~~~~~l~~~~~~~ 474 (476)
++++++|+++++++
T Consensus 363 ~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 363 EEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=283.36 Aligned_cols=340 Identities=19% Similarity=0.222 Sum_probs=256.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhcC-CC------CCCCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~-~~------~~~~~~~~~la~~l~~~~ 152 (476)
+|+++.+++|+++| .+|++++||.++ +++|+ .+|.+.+++.+++++.. .+ .+..++..++++++++.+
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 37889999999999 999999999998 55888 79999999999987632 11 124688899999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+.+++++++||++|++.+++. +.++++.|+....+|+.+...+...|. .++.+|..|
T Consensus 102 -g~~~v~~~~ggt~a~~~~~~~---~~~~gd~V~~~~p~~~~~~~~~~~~g~-------------------~~~~v~~~d 158 (398)
T 3a2b_A 102 -GKEAAILFSTGFQSNLGPLSC---LMGRNDYILLDERDHASIIDGSRLSFS-------------------KVIKYGHNN 158 (398)
T ss_dssp -TCSEEEEESSHHHHHHHHHHH---SSCTTCEEEEETTCCHHHHHHHHHSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEECCHHHHHHHHHHH---HhCCCCEEEECCccCHHHHHHHHHcCC-------------------ceEEeCCCC
Confidence 568999999999999999994 455555555556666666655554443 244556679
Q ss_pred HHHHHHHHhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---cccccchhhccCCC--
Q 011856 233 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 306 (476)
Q Consensus 233 ~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~-- 306 (476)
+++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|..+ +.+.. ..+.+++.
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAG-TASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC-HHHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCc-hHhhcCCCcC
Confidence 9999999986433 6789999999999999988 999999999999999999999644 22322 23445553
Q ss_pred Cchh--hhhhhcCC-CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 307 pDi~--t~sK~lg~-G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (476)
+|++ ++||.++. | ||+++++++++.+..... .+..+...++..++++.++|+.++. ++..++++++.+++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5777 89999983 5 999999999888763111 1233445567766677788877644 5788889999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeCC-
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 454 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~~- 454 (476)
.|+++ ...+ +++.|.++++.+.. .....++.+.|+++||++.++.. ..+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIRS-------------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECCC-------------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcCC-------------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 99875 2222 23457888887631 22346788999999999988643 35788766
Q ss_pred -CcHHHHHHHHHHHHHHHHHh
Q 011856 455 -HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 -~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=293.49 Aligned_cols=332 Identities=15% Similarity=0.101 Sum_probs=250.7
Q ss_pred eecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
++.+.+++|.||++||||.++ +++|+ .||++.+++.+++++. ... ....+...++++++++++ +.+..
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~~~ 122 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFDEC 122 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCSEE
T ss_pred CCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCCeE
Confidence 567778888999999999998 78888 6999999999999872 111 122344566777777777 56678
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.++.+|+++|++
T Consensus 123 i~~~sGt~a~~~~l~---~~~~~gd~Vl~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~le~ 180 (409)
T 3kki_A 123 LLSQSGWNANVGLLQ---TICQPNTNVYIDFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHLRM 180 (409)
T ss_dssp EEESCHHHHHHHHHH---HHCCTTCEEEEETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHHHH
T ss_pred EEecchHHHHHHHHH---HhcCCCCEEEECCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHHHH
Confidence 888999999999998 4556666666777777766655554443 244556679999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-cccccchhhccCC--CCch--hh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL--TT 311 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~--~pDi--~t 311 (476)
.++++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ + +.|..+. ..+++ .+|+ .+
T Consensus 181 ~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s 253 (409)
T 3kki_A 181 LIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTAS 253 (409)
T ss_dssp HHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEE
T ss_pred HHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEee
Confidence 99853 3589999999999999998 99999999999999999999987 5 4554433 55666 4566 57
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+||++++| .|++++++++++.+......+..+ .+.++++++++.++++.+++ ++++++++++.+++.+.|+++.
T Consensus 254 ~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 328 (409)
T 3kki_A 254 LAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFS-STLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-- 328 (409)
T ss_dssp SSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHS-BCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cchhhCCC--ceEEEECHHHHHHHHHhCcCcccc-CCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--
Confidence 99999965 699999999888765321222222 24688999999999998765 5778888899999998888752
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEeC--CCcHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~~--~~t~e~i~ 461 (476)
+. +.+.+.++++.+.. .....++.+.|+++||++.+.. ...+|+++ .+|+++++
T Consensus 329 ~~----~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~ 391 (409)
T 3kki_A 329 LT----IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIA 391 (409)
T ss_dssp CC----CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHH
T ss_pred Cc----cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHH
Confidence 22 23578888888742 2234578899999999986542 34567754 57999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|+++++.
T Consensus 392 ~~~~~l~~~l~~ 403 (409)
T 3kki_A 392 KIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.77 Aligned_cols=337 Identities=17% Similarity=0.195 Sum_probs=253.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHHHHHh-cCC-----CC-CCCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK-GTS-----FG-APCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~l~~-~~~-----~~-~~~~~~~~la~~l~~~~ 152 (476)
.|+++.+++|+++| .+|++||||.++ .++| +.+|++.+++.+++++ +.. +. ...+...++++.+++++
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 37888999999999 899999999998 5588 4899999999999876 321 11 24577889999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+.+++++++||++|+..+++. +.++++.|+++..+|+.+...+...|. +++.+|++|
T Consensus 98 -g~~~~i~~~sGt~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 -GYSRALLFISGFAANQAVIAA---MMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp -TCSEEEEESCHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEeCCcHHHHHHHHHH---hCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 455788888899999999984 456666777777788866655544333 345566779
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCCCch
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pDi 309 (476)
+++|++.+++..+.+++|+++++++++|.+.+ +++|.++|++||++||+||+|. |+ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865434788999989999999998 9999999999999999999995 43 233332 2456667898
Q ss_pred h--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011856 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (476)
+ ++||.++. +.|++++++++++.+...... +..+.+.|++.++++.++|+.+.+ ++..++++++.+++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARH-LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHH-HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchh-hhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7 89999983 459999999998887632111 222346899999999999988763 466777778888887777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeC--CC
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 455 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~--~~ 455 (476)
+++ ++.. ..+.|.++++.+.. .....++.+.|+++||.+.++.. ..+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVGD-------------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEES-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 654 3211 13567777777631 22346788999999999987642 3466654 45
Q ss_pred cHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKV 470 (476)
Q Consensus 456 t~e~i~~~~~~l~~~ 470 (476)
+++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999864
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.16 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=228.4
Q ss_pred eEEEeecCCEEEEcCCC-----EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCH-HHHHHHHHHHhhCC-
Q 011856 83 IVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCL-LENVLAEMVISAVP- 153 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~-~~~~la~~l~~~~~- 153 (476)
++-.+++|+++||.+|+ ++|||..+. +.++ .+|+|.+++.+++++.. .|.. ..+ ++.++++++.+.++
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 45678999999999998 789998774 3466 78999999999987632 2221 356 77888888876553
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 154 --~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
..++|++++||++|++.+++.. ..++++|++.+++||++...+ ...|..+...+.....+ .+. .
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~--------~~~---~ 149 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAI-EGNQRTVMPVALEKQAD--------GWF---C 149 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEECEECSS--------SEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHH-HHCCCEEEEeecccCCC--------ccc---c
Confidence 4689999999999999999942 234578999999999965544 33343332211100000 000 3
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC---
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP--- 307 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p--- 307 (476)
|+++|++.+++. ++++|+++..++++|.+.+. +++++|.++|++||++||+||+|++| +.|.... ....+.+
T Consensus 150 d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~ 225 (390)
T 1d2f_A 150 DMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTC-DELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW 225 (390)
T ss_dssp CHHHHHHHHTST--TEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred CHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence 899999999743 56777765556778887654 56999999999999999999999988 5553221 1222322
Q ss_pred c-hhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccc-cCCC-CCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 011856 308 D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGEL 380 (476)
Q Consensus 308 D-i~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l 380 (476)
| +.++||.++ +|+|+||++++ +++++.+.. ... ..++ +.|+++++++.++|+...+ ++..++++++.+++
T Consensus 226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (390)
T 1d2f_A 226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI 302 (390)
T ss_dssp EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3 779999999 89999999885 788887752 222 3454 7789999999998875321 33445555666666
Q ss_pred HHHHHHHhhhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEe
Q 011856 381 TQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTS 452 (476)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~ 452 (476)
.+.|++. ++....+++.|. ++++.+..... ...++.+.|+ ++||++.++. ...+|++
T Consensus 303 ~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris 367 (390)
T 1d2f_A 303 ADKMNAA---FPELNWQIPQSTYLAWLDLRPLNI------------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN 367 (390)
T ss_dssp HHHHHHH---CSSCCCCCCSBCSEEEEECGGGCC------------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHhh---CCCCEEecCCccEEEEEEccccCC------------CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence 6666552 221222344444 44677642100 1256788888 6899998763 2467898
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+..+++++++++++|+++++++
T Consensus 368 ~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 368 AGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999998764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=281.47 Aligned_cols=351 Identities=12% Similarity=0.060 Sum_probs=244.9
Q ss_pred CeEEEeecCCEEEEcCCCEE-----EecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011856 82 PIVFDSVKGSHMWDIDGNEY-----IDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (476)
.++..+++|+++||.+|++| +||..+ .+..+.+|+|.+++.++++++. .++ +..+++.++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45567899999999987555 999887 5555579999999999998642 222 346788899999988764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccC
Q 011856 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 --~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (476)
+.+++++++||++|++.+++.. ..+++.|++..++||+....+ ...|..+...+.. ...+ ...
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~--- 152 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVV-KNNNRELIISPLQKLENG--------NYI--- 152 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHH-HHTTCEEEECCCEECTTS--------CEE---
T ss_pred CCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHH-HHcCCeEEeeeeeecCCC--------ceE---
Confidence 4789999999999999999953 345678888898998855443 3344433322211 0011 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhcc-----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----- 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~----- 303 (476)
-|+++|++.+++ +++|+++.+++++|.+.+..+ +++|+++|++||++||+||+|++| +.|... ....+
T Consensus 153 ~d~~~l~~~l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 153 MDYEDIENKIKD----VKLFILCNPHNPVGRVWTKDE-LKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp CCHHHHHHHCTT----EEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred eeHHHHHHHhhc----CCEEEEECCCCCCCcCcCHHH-HHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 189999999873 777777777778888766554 999999999999999999999988 655321 11111
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (476)
+....+.++||.++ +|+|+||+++++ ++++.+... .....+++.|+++++++.++++..++ ++..++++++.++
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA--FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH--HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 11223458999998 799999998875 888877631 12334567899999999999875321 3445555566666
Q ss_pred HHHHHHHHhhhcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEE
Q 011856 380 LTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFT 451 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~ 451 (476)
+.+.|++. .+....+++.+.+ +++.+.... ....++.+.|+++ ||++.++. ...+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 370 (391)
T 4dq6_A 306 AIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRI 370 (391)
T ss_dssp HHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEE
T ss_pred HHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEE
Confidence 66666553 2222333444444 446664211 0125788899998 99998752 246889
Q ss_pred eCCCcHHHHHHHHHHHHHHH
Q 011856 452 SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~ 471 (476)
++.++++++++++++|++++
T Consensus 371 s~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 371 NLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECCSCHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999876
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=278.16 Aligned_cols=354 Identities=14% Similarity=0.081 Sum_probs=239.4
Q ss_pred eEEEeecCCEEEEcCCC-------EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC
Q 011856 83 IVFDSVKGSHMWDIDGN-------EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP 153 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~~la~~l~~~~~ 153 (476)
++..+++|+++||.||+ +++||..+. +.++ .+|.+.+++.+++++.. .|.. ..++++++++++.+.++
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 44568999999998884 789998774 3344 68999999999987632 2221 34566667776665443
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 ---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+.++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+...+.....+ .+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~--- 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDG--------YYT--- 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETT--------EEE---
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEEEecccccCCC--------CEE---
Confidence 4679999999999999999953 2345789999999999654433 3343322211100000 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc-----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----- 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----- 303 (476)
.|+++|++.+++. ++++|+++..++++|.+.+ ++++++|.++|++||++||+||+|++| +.+.. .....+
T Consensus 151 ~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 IDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp CCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred EcHHHHHHHhccC--CCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 3899999999742 5777777666777887764 567999999999999999999999988 55531 122111
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (476)
+....+.++||.++ +|+|+||++++ +++++.+.. .....++ +.|+++++++.++|+...+ ++..++++++.+
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQR 304 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 22233458999999 89999999986 678887763 2222233 5789999999998875321 334445555666
Q ss_pred HHHHHHHHHhhhcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGF 450 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~ 450 (476)
++.+.|++. ++....+++.|.+ +++.+.... ....++.+.|+ ++||++.++. ...+|
T Consensus 305 ~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 305 IVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 666666542 2222223444544 456764210 01256788887 6899998763 24678
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 451 TSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++..+++++++++++|+++++++
T Consensus 370 is~~~~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 370 INLAAPSSVIQESLERLNKALKDL 393 (399)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCHHHHHHHHHHHHHHHHHH
Confidence 988888999999999999998765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.56 Aligned_cols=338 Identities=15% Similarity=0.095 Sum_probs=224.5
Q ss_pred CeEEEeecCCEEEE-cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011856 82 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVR 159 (476)
Q Consensus 82 p~~~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~ 159 (476)
++++.+|.+.+.++ .+|+++|||.++. ++++ .+|++.+++.+++++... ++.....++.++++++++ ..++++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~l~~~la~~~~~~~~~i~ 82 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGV--YPDVNYRRLNKSIENYLKLKDIGIV 82 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGS--CCCTTCHHHHHHHHHHHTCCSCEEE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHhCCCcceEE
Confidence 34555555555444 4899999999986 4555 689999999999987433 344455677888887776 578999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
+++||++|++.+++. + ++|++.+++||+....+ ...|..+...+.....+ -++++|++.
T Consensus 83 ~~~g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------------~~~~~l~~~ 141 (361)
T 3ftb_A 83 LGNGASEIIELSISL---F---EKILIIVPSYAEYEINA-KKHGVSVVFSYLDENMC--------------IDYEDIISK 141 (361)
T ss_dssp EESSHHHHHHHHHTT---C---SEEEEEESCCTHHHHHH-HHTTCEEEEEECCTTSC--------------CCHHHHHHH
T ss_pred EcCCHHHHHHHHHHH---c---CcEEEecCChHHHHHHH-HHcCCeEEEeecCcccC--------------CCHHHHHHh
Confidence 999999999999994 4 88999999999865443 33343332221111111 167899998
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhh
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKI 315 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~ 315 (476)
+++ +++|+++.+++++|.+.+.++ +++|.++|++||++||+||+|+++ +..........+..++++ ++||.
T Consensus 142 l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 216 (361)
T 3ftb_A 142 IDD----VDSVIIGNPNNPNGGLINKEK-FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF 216 (361)
T ss_dssp TTT----CSEEEEETTBTTTTBCCCHHH-HHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST
T ss_pred ccC----CCEEEEeCCCCCCCCCCCHHH-HHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh
Confidence 874 455555555677788776555 999999999999999999999988 532222223333333433 79999
Q ss_pred cC-CCCcEEEEE-ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 316 IG-GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 316 lg-~G~~iG~~~-~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
++ +|+|+||++ +++++++.+... ..+++.|+++++++.++|+. ++..++.++.....++.|.+...+++.
T Consensus 217 ~~~~G~r~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (361)
T 3ftb_A 217 FAMPGIRFGYGITNNKEIAAKIKAK-----QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGF 288 (361)
T ss_dssp TSCGGGCCEEEEESCHHHHHHHHTT-----SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCcceeEEEeCCHHHHHHHHhh-----CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 799999998 899999988742 23568899999998888762 233344444444444444444444544
Q ss_pred ce-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHH
Q 011856 394 AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 466 (476)
Q Consensus 394 ~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~ 466 (476)
.. ..++.|.++++.+... ...++.+.|+++||++.++. ...+|+++. ++++++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~ 353 (361)
T 3ftb_A 289 IKRVFSPHANFVLCRLENI--------------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRA 353 (361)
T ss_dssp EEEEECCSSSEEEEEESSS--------------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHH
T ss_pred CceecCCCCeEEEEEcCCC--------------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHH
Confidence 44 5667888888877431 12578889999999998863 245788765 88889999999
Q ss_pred HHHHHHH
Q 011856 467 AEKVKMR 473 (476)
Q Consensus 467 l~~~~~~ 473 (476)
|+++.+.
T Consensus 354 l~~~~~~ 360 (361)
T 3ftb_A 354 LKGVENN 360 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=271.57 Aligned_cols=353 Identities=14% Similarity=0.060 Sum_probs=235.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
.+|||..+. ..+| .+|.+.+++.+++++. ..|+. ..++++++++++.+.++ +.+ +|++++||++|+
T Consensus 38 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 478888875 3456 6899999999998761 22321 34667777777766443 467 999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~ 247 (476)
+.+++.+ ...++.|++.+++||++...+ ...|..+...+...... ........+ .|+++|++.++ +++
T Consensus 115 ~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~l~---~~~ 183 (429)
T 1yiz_A 115 YATIQGH--VDEGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKT-----GGTISSADWVLDNNELEALFN---EKT 183 (429)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECBCCCS-----SSSEEGGGCBCCHHHHHHHCC---TTE
T ss_pred HHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEeCCcccc-----cccccccCcccCHHHHHHHhc---cCc
Confidence 9999963 334678999999999965543 33444333222111000 000000111 38999999886 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhh----ccCCCCchhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE----YFGVTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~----~~g~~pDi~t~sK~lg-~G~ 320 (476)
++|+++++++++|.+.+ ++++++|.++|++||++||+||+|++| +.|.. .... ..+..+++.++||.++ +|+
T Consensus 184 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMD-RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 88888888888888765 667999999999999999999999988 55431 1111 2334445668999999 799
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+.. ..+..+++.|+++++++.++|+. ...+++.+++++..+..++.|.+...++++..
T Consensus 263 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 339 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 339 (429)
T ss_dssp CCEEEESCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ceEEEEeCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999988762 33456788999999999999987 43244554444444444444433333334433
Q ss_pred EeeeeceeEEEEEecCCCc-CchhhcccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQH 462 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~ 462 (476)
..+..|.++++.+...... .+.. ........++.+.|+ ++||++.++. ...+|+++..++++|++
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 417 (429)
T 1yiz_A 340 TVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQK 417 (429)
T ss_dssp EECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHH
T ss_pred cCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHH
Confidence 3344577888887532000 0000 000012356777776 7999998752 34678888889999999
Q ss_pred HHHHHHHHHH
Q 011856 463 TITAAEKVKM 472 (476)
Q Consensus 463 ~~~~l~~~~~ 472 (476)
++++|+++++
T Consensus 418 ~l~~l~~~l~ 427 (429)
T 1yiz_A 418 AAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9999998865
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=271.40 Aligned_cols=347 Identities=11% Similarity=0.008 Sum_probs=238.9
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC----C
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP----S 154 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~----~ 154 (476)
|+....+.+.+++|.+|+++|||.++. ..++ .+|.+.+++.++++....|+. ..+++.++++++.+.++ +
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~ 89 (396)
T 3jtx_A 13 PFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD 89 (396)
T ss_dssp HHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 444446677778889999999999885 3444 689999999998865433432 35788889998887664 3
Q ss_pred CC-eEEEeCCHHHHHHHHHHHHHhccCC----ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 155 IE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 155 ~e-~v~~~~sGseA~~~al~~ar~~~~~----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
++ ++++++||++|++.+++.... .++ +.|++.+++||++... +...|..+...+. ...++.
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~-~~~g~~----------- 155 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGA-TLLGGGEIHFANC-PAPSFN----------- 155 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHH-HHHTTCEEEEEEC-CTTTCC-----------
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHH-HHHcCCEEEEeec-CCCCCc-----------
Confidence 67 999999999999999995422 222 6899999999886553 3334443332222 111110
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-ccchh-h-----
Q 011856 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQ-E----- 301 (476)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~-~----- 301 (476)
-|+++|++.+++ ++++|+++..+|++|.+.+.++ +++|.++|++||++||+||+|++| +.+ ..... .
T Consensus 156 -~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 156 -PDWRSISEEVWK---RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp -CCGGGSCHHHHH---TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred -cCHHHHHHhhcc---CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 167888888875 5777777666777888876555 999999999999999999999988 655 22221 1
Q ss_pred --ccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011856 302 --YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (476)
Q Consensus 302 --~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (476)
..+..+++.++||.++ +|+|+||+++++++++.+.. .....+++.|+++++++.++|+. ++..++.++...
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL---YRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH---HHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1344455668999987 68999999999999988862 33445678899999999988863 333333333333
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------------
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------ 445 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------ 445 (476)
..++.+.+...+. .....+..|.++++.+... ...++.+.|+ ++||++.++.
T Consensus 305 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~ 369 (396)
T 3jtx_A 305 EKFERVIPILQQV-FDVKLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG 369 (396)
T ss_dssp HHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred HHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence 3333333333322 1122234567777777421 1246777775 5699998752
Q ss_pred CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 446 FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...+|+++..+++++++++++|++++
T Consensus 370 ~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 370 EGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24678888889999999999998864
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=262.04 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=238.0
Q ss_pred ecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011856 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (476)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGse 166 (476)
.+|.++++.+|+++|||.++. ++++ .+|++.+++.+++++. ..|+.....++.++++++++ ..+++++++||++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456777889999999999885 4555 7899999999988763 44567777899999999986 5789999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ...++.|++..++|+++... +...|..+...+.....++ |+++|++.++++ ++
T Consensus 80 a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~ 141 (354)
T 3ly1_A 80 GIRAAIEAY--ASLEAQLVIPELTYGDGEHF-AKIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SG 141 (354)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSSCTHHHHH-HHHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SS
T ss_pred HHHHHHHHH--hCCCCeEEECCCCchHHHHH-HHHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CC
Confidence 999999953 34567888888888875433 3334443322221111111 899999999853 25
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhh---cc-CCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE---YF-GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~---~~-g~~pDi~t~sK~lg-~G 319 (476)
+++|+++.+++++|.+.+.++ +++|.++| +||++||+||+|.++ +.+.. .... .+ +....+.++||.++ +|
T Consensus 142 ~~~v~l~~p~nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 219 (354)
T 3ly1_A 142 PSIVYLVNPNNPTGTITPADV-IEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG 219 (354)
T ss_dssp CEEEEEESSCTTTCCCCCHHH-HHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG
T ss_pred CCEEEEeCCCCCcCCCcCHHH-HHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh
Confidence 777777777777888887444 66677777 699999999999988 54421 1111 12 32233458999999 89
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
+|+||+++++++++.+.... ..++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..+
T Consensus 220 ~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~-~~~ 289 (354)
T 3ly1_A 220 MRVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLP-YLP 289 (354)
T ss_dssp GCCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCC
T ss_pred hhheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCe-ECC
Confidence 99999999999999887421 2367899999999888863321 445566666666777666665 222 235
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+.|.++++.+.. ...++.+.|.++||++. +. ...+|+++. +++++++++++|++++++
T Consensus 290 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 290 SEGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 678888777642 12578888999999988 32 245788866 899999999999999875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-32 Score=270.39 Aligned_cols=356 Identities=10% Similarity=0.090 Sum_probs=232.2
Q ss_pred EEEeecCCEEEEcCCC---EEEecccChhhccCCC-CcHHHHHHHHHHHHhcC--CC---CCCCHHHHHHHHHHHhhCCC
Q 011856 84 VFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVPS 154 (476)
Q Consensus 84 ~~~~~~G~~~~d~dG~---~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~--~~---~~~~~~~~~la~~l~~~~~~ 154 (476)
++..++|.++++.+++ ++|||.+| ++.++ .+|+|++|+.+++++.. .| .+..+++.++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4667788777655444 59999987 55544 68999999999987531 12 23457888999999887752
Q ss_pred ---C-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 155 ---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 155 ---~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
. +++++++||++|+..+++.. ..+++.|++.+++|+++.. .+...|..+...+....... .+.. .
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~---~ 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRK-LVEFFEGEMVPVQLDYVSAD-----ETRA---G 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEBCCCSSC-----CSSC---C
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHH-HHHHcCCEEEEeeccccccc-----CcCC---C
Confidence 3 79999999999999999842 3456788888888887543 33344443322211000000 0000 0
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccC----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---- 304 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g---- 304 (476)
-|+++|++.+++ ++++|+++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++
T Consensus 167 ~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 242 (407)
T 3nra_A 167 LDLTGLEEAFKA---GARVFLFSNPNNPAGVVYS-AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 242 (407)
T ss_dssp BCHHHHHHHHHT---TCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCG
T ss_pred cCHHHHHHHHhh---CCcEEEEcCCCCCCCcccC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccC
Confidence 189999999985 4555555555777887765 555999999999999999999999988 55432 2222222
Q ss_pred -CCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 305 -VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 305 -~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
....+.++||.++ +|+|+||+++++++++.+.. .....+++.++++++++.++|+. .+++.++..+..+.+++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~ 317 (407)
T 3nra_A 243 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK---LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRD 317 (407)
T ss_dssp GGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHH---HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHH---HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHH
Confidence 2233558999999 79999999999999988763 33445667788888887776642 13344444444444444
Q ss_pred HHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCC
Q 011856 383 GIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLA 454 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~ 454 (476)
.|.+...+++....+. ..|.++++.+.... ....++.+.|++ +||++.++. ...+|+++.
T Consensus 318 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 318 ELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 4444333342222223 33566666653211 112567788875 599998753 346789888
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 011856 455 HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+++++++++++|+++++++
T Consensus 386 ~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 386 QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998875
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-31 Score=263.01 Aligned_cols=339 Identities=16% Similarity=0.121 Sum_probs=238.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
|+++|||.++.. +..++.++.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|+
T Consensus 33 g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 678899988764 3457889999999999988631 1322 24667777777766443 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh----cCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNK 244 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~----~~~ 244 (476)
+.+++.+ ...++.|++.+++||+.... +...|..+...+... .+ .|+++|++.++ +.
T Consensus 112 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~- 172 (407)
T 2zc0_A 112 DLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKIEGVPVDN-DG--------------MRVDLLEEKIKELKAKG- 172 (407)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-
T ss_pred HHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEEEEcccCC-CC--------------CCHHHHHHHHHhhhccc-
Confidence 9999964 33567899999999985443 333333222111100 00 28999999997 42
Q ss_pred CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCC---CCchhhhhhhcCC
Q 011856 245 GEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGV---TPDLTTLGKIIGG 318 (476)
Q Consensus 245 ~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~---~pDi~t~sK~lg~ 318 (476)
.++++|+ ++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++. ..++.++||.+++
T Consensus 173 ~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 251 (407)
T 2zc0_A 173 QKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGT 251 (407)
T ss_dssp CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCT
T ss_pred CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCC
Confidence 2577765 4555667888765 666999999999999999999999988 54432 22222322 2345589999999
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
|+|+|++++++++++.+.. .....+++.+++++.++.++|+.. .. ++..++++++.+++.+.|++......
T Consensus 252 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 327 (407)
T 2zc0_A 252 GFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAE- 327 (407)
T ss_dssp TSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSC-
T ss_pred CcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-
Confidence 9999999999999888763 223445677899999999988753 22 66777888888888888876422221
Q ss_pred ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC--------CcceEEeCCC-cHHHHHHH
Q 011856 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 394 ~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--------~~~~~~~~~~-t~e~i~~~ 463 (476)
...+..|.++++.+... . ...++.+.|+++ ||++.++. ...+|+++.. ++++++++
T Consensus 328 -~~~~~~~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~ 393 (407)
T 2zc0_A 328 -FTKPIAGMFVMFFLPEG-A------------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIG 393 (407)
T ss_dssp -BCCCSBSSEEEEECSTT-C------------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHH
T ss_pred -EecCCCcEEEEEEcCCC-C------------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHH
Confidence 11234567778877421 0 125688888888 99998752 2457887665 79999999
Q ss_pred HHHHHHHHHHhh
Q 011856 464 ITAAEKVKMRFL 475 (476)
Q Consensus 464 ~~~l~~~~~~~~ 475 (476)
+++|++++++++
T Consensus 394 ~~~l~~~l~~~~ 405 (407)
T 2zc0_A 394 IKKLAKLYKEKF 405 (407)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-31 Score=260.87 Aligned_cols=326 Identities=13% Similarity=0.075 Sum_probs=230.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~a 175 (476)
.+.+|||.++. +.++ .+|+|.+++.+++.+...++|+.....+++++++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 35789999885 4444 78999999999988532334444455778888888774 3479999999999999999942
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...+++|++.+++|+++...+. ..|..+...+..... ..|+++|++.++++ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~--------------~~d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADF--------------TLDRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTS--------------CCCHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCC--------------CCCHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456789999999999765543 333322221111100 12899999999853 4667777777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
++++|.+.+.++ +++|.++|++| |+++|+||+|++| +.+........+...++.++||...+|+|+||++++++++
T Consensus 167 ~nptG~~~~~~~-l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFDAAD-MEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCCHHH-HHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCCHHH-HHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 777888775444 99999999999 9999999999988 4443333333444455668999933799999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
+.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++ ++.....++.|.++++.+.
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~~~~-- 314 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HGGVTVFPSAANFLLARVP-- 314 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----STTCEECCCSSSEEEEECS--
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEEEEECC--
Confidence 988742 23567899999999998875211 33444555555555555543 4322345667788877763
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...++.+.|.++||++.++.. ..+|+++. +++|+++++++|+++++
T Consensus 315 --------------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 --------------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --------------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred --------------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 125678889999999987642 45788866 99999999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=264.64 Aligned_cols=335 Identities=15% Similarity=0.101 Sum_probs=223.2
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.+|+++|||.+|. ..++ .+|++.+++.++++++. .|+. ..++++++++++.+.++ +.++|++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 3688899999886 3444 38899999999887632 2221 34566777777765433 578999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
+.+++.. ...++.|++.+++|++.... +...|..+...+.....++ .-|+++|++. +++
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~------~~~ 163 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQI-LRALGLVPVDLPTAPENRL------------QPVPADFAGL------DLA 163 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHHTTCEEEEEECCGGGTT------------SCCHHHHTTS------CCS
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHH-HHHcCCEEEEeecCcccCC------------CCCHHHHHhc------CCe
Confidence 9999953 34567899999999886543 3333432222111100000 0167777654 456
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchhhhhhhcC-CCCcEEEE
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAY 325 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~t~sK~lg-~G~~iG~~ 325 (476)
+|+++.+++++|.+.+.++ +++|.++|++||++||+||+|++| +.+... ..+..+....+.++||.+| +|+|+||+
T Consensus 164 ~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 242 (391)
T 3h14_A 164 GLMVASPANPTGTMLDHAA-MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWM 242 (391)
T ss_dssp EEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEE
T ss_pred EEEECCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEE
Confidence 6666666778888776555 999999999999999999999988 555322 2222121222337999998 89999999
Q ss_pred EecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee-cee
Q 011856 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGM 403 (476)
Q Consensus 326 ~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~ 403 (476)
++++++++.+. ......+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. +....+++. +.+
T Consensus 243 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~ 315 (391)
T 3h14_A 243 VVPEDQVRVVE---RIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA----GFTRIAPPDGAFY 315 (391)
T ss_dssp ECCGGGHHHHH---HHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCBCCCCBTTE
T ss_pred EeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCCcccCCCeeEE
Confidence 99999988876 233455778899999998888861111 334455555555555555543 433323333 456
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC-------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.+.... ....++.+.|+++ ||++.++. ...+|+++..+++++++++++|++++++.
T Consensus 316 ~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 316 VYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp EEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 666663211 0125677887775 99998752 23578988889999999999999998753
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-34 Score=288.20 Aligned_cols=352 Identities=11% Similarity=0.016 Sum_probs=236.0
Q ss_pred CeEEEeecCCEEEEcCCC--EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---
Q 011856 82 PIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP--- 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~--- 153 (476)
.++..+++|+++||.+|+ +++||..+. ..++ .+|++.+++.+++.++. ++| ..+++.++++++.+.++
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~-~~y~~~~~~l~~~la~~l~~~~g~~~ 87 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLV-YGYTYASDELLQAVLDWEKSEHQYSF 87 (392)
Confidence 456678999999999999 999998873 2334 58999999999887532 222 23455566666655443
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.++|++++||++|++.+++.. ..++++|++.+++||++...+.. .|..+...+.....+ .+. .|+
T Consensus 88 ~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g--------~~~---~d~ 153 (392)
T 3b1d_A 88 DKEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVRL-NNRKLVSNSLKEENG--------LFQ---IDF 153 (392)
Confidence 4689999999999999999953 34567899999999997654332 232222111100000 000 167
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhhc--cCCC
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVT 306 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~--~g~~ 306 (476)
++|++.+++. ++++|+++..++++|.+.+. +++++|+++|++||++||+||+|++| +.+.. ..... .+..
T Consensus 154 ~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 230 (392)
T 3b1d_A 154 EQLENDIVEN--DVKLYLLCNPHNPGGRVWER-EVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFA 230 (392)
Confidence 8888888632 56677777667778877654 45999999999999999999999988 55421 11111 3344
Q ss_pred CchhhhhhhcC-CCCcEEEEEecH-HHHHhhcCCCCccccCC-CCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 011856 307 PDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELT 381 (476)
Q Consensus 307 pDi~t~sK~lg-~G~~iG~~~~~~-~i~~~l~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~ 381 (476)
+++.++||+++ +|+|+||+++++ ++++.+... ....+ .+.|+++++++.++|+...+ ++..++++++.+++.
T Consensus 231 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 231 LVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQ---QLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAV 307 (392)
Confidence 56678999999 899999999865 588877632 22222 24688999999888874322 344455555555555
Q ss_pred HHHHHHhhhcCCceEeeeeceeE-EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeC
Q 011856 382 QGIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSL 453 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~ 453 (476)
+.|++. .+....+++.|.++ ++.+... .....++.+.|+ ++||++.++. ...+|+++
T Consensus 308 ~~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~ 372 (392)
T 3b1d_A 308 EYFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNI 372 (392)
Confidence 555541 22222344555554 4666321 011246778886 7899998763 23578888
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 011856 454 AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~ 472 (476)
..+++++++++++|+++++
T Consensus 373 ~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 373 AAPKSLVEEICKRIVCCLP 391 (392)
Confidence 8889999999999998875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=263.94 Aligned_cols=320 Identities=14% Similarity=0.130 Sum_probs=230.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|++++||.++. ..+|+ +|.+.+++.++++++. .|+. ..+++.++++++.+.++ +++++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 467789998875 35665 8999999999987642 2321 34677788888776542 5689999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ..++++|++.+++||+....+ ...|. .++.+| .|+++|++.+++ ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~-------------------~~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGA-------------------KPVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTC-------------------EEEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCC-------------------EEEEeC-CCHHHHHHhccc---CceE
Confidence 999963 345578999999999865443 22332 133334 589999999864 5777
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc-CC-CCc--hhhhhhhcC-CCCcEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GV-TPD--LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g~-~pD--i~t~sK~lg-~G~~iG 323 (476)
|+++++++++|.+.+ ++ |.++|++||++||+||+|+++ +.|.......+ +. ..| +.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 777777778899888 66 999999999999999999988 54432222222 11 123 347999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
|+++++++++.+.. .....+++.|+++++++.++|+. ..+ ++..++++++.+++.+.|+++ ++....+..
T Consensus 233 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAILK---LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 99999999888762 33445678899999998888865 222 456667777778888777764 222111233
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
|.++++.+.. ...++.+.|+ ++||++.++. ...+|+++.++++++++++++|+++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5555555531 1256788887 7899998752 346899888999999999999998875
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=263.94 Aligned_cols=331 Identities=15% Similarity=0.081 Sum_probs=222.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHhhC----C---CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-LLENVLAEMVISAV----P---SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~-~~~~~la~~l~~~~----~---~~e-~v~~~~sGseA 167 (476)
+|+++|||.++. ..+| .+|.+.+++.+++++...++|+. ....++.+.+++++ + .++ +|++++||++|
T Consensus 23 ~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (376)
T 2dou_A 23 RGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEG 99 (376)
T ss_dssp TTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHH
T ss_pred cCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 578899999885 3566 58999999999886532334444 23445555555543 4 235 99999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.+++.. ..+++.|++.+++||++...+ ...|..+...+. ..++ ..|+++|++.++. ++
T Consensus 100 ~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~~~~--~~~~------------~~d~~~l~~~l~~---~~ 159 (376)
T 2dou_A 100 LAHLLLAL--TEPEDLLLLPEVAYPSYFGAA-RVASLRTFLIPL--REDG------------LADLKAVPEGVWR---EA 159 (376)
T ss_dssp HHHHHHHH--CCTTCEEEEESSCCHHHHHHH-HHTTCEEEEECB--CTTS------------SBCGGGSCHHHHH---HE
T ss_pred HHHHHHHh--cCCCCEEEECCCCcHhHHHHH-HHcCCEEEEeeC--CCCC------------CCCHHHHHHhhcc---Cc
Confidence 99999953 234578999999999865543 333443322211 1111 0267888888863 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhc---cCCCCchhhhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
++|+++..++++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ..... .+....+.++||.++ +|+|
T Consensus 160 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 160 KVLLLNYPNNPTGAVAD-WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCcCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 77777766677887764 566999999999999999999999988 54422 11222 222334558999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-e
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-I 400 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~ 400 (476)
+||+++++++++.+.. .....+++.|+++++++.++|+.. ++..++.++..+..++.|.+...++ + ..+++ .
T Consensus 239 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~-~~~~~~~ 311 (376)
T 2dou_A 239 LGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV-L-SLLPPRA 311 (376)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT-S-EECCCCB
T ss_pred eEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh-c-CccCCCe
Confidence 9999999999988763 233445677899999988888642 2233333333333333343333333 2 22233 4
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
|.++++.+... ....++.+.|+++||++.++. ...+|+++..+++++++++++|++++
T Consensus 312 ~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 312 TMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp SSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 56677777421 012468889999999998753 34678988889999999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=267.90 Aligned_cols=352 Identities=13% Similarity=0.090 Sum_probs=238.6
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~-~-~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.|+++|||..|.. .++ .++.+.+++.+++++ + ..|+. ..+++.++++++.+.++ ++++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899988852 344 689999999999875 2 22322 24677888888876654 357899999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC-CCCCCCCCceeeccC-CCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (476)
+.+++.. ..+++.|++.+++||++... +...|..+...+..... +... ......+ .|+++|++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQR----NTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGTS----CBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCccccccc----cccccCcccCHHHHHHhhc---cC
Confidence 9999953 34568899999999985543 34444433322111000 0000 0000011 27999998886 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc---hh--hccCCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---AQ--EYFGVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---~~--~~~g~~pDi~t~sK~lg-~G 319 (476)
+++|++++++|++|.+.+ ++++++|.++|++||++||+||+|+++ +.+... .. +..+..+.+.++||.++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~~-~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFT-REELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 788888877788888765 667999999999999999999999988 554211 11 12355556678999999 89
Q ss_pred CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 320 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 320 ~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+|+||+++ ++++++.+.. ..+..+++.+++.++++.++|+.... ++..++++++.+++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAK---AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 9999988762 33445778899999999999987532 345566666677777776664 333
Q ss_pred eEeeeeceeEEEEEecCCCc-C--chhhcccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVY-N--FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 459 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~ 459 (476)
...+..|.++++.+...... . +... ..+.....++.+.|+ ++||++.|+. ...+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 33355677888877431000 0 0000 000112356777776 5899998763 34688988889999
Q ss_pred HHHHHHHHHHH
Q 011856 460 IQHTITAAEKV 470 (476)
Q Consensus 460 i~~~~~~l~~~ 470 (476)
|++++++|+++
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=262.10 Aligned_cols=328 Identities=12% Similarity=-0.004 Sum_probs=226.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
.+| ++|||.++. +.++ .+|.+.+++.+++.....|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 356 889999885 4555 689999999988754333432 35778888888877654 5689999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.....++++.|++.+++|+++...+ ...|..+...+.....++ ++ ++++.+.+ ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAA-KFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHH-HHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 99996422122678999999999865443 333433222111111111 11 45555553 4556
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-h--------ccCCCCchhhhhhhcC-C
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 318 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~--------~~g~~pDi~t~sK~lg-~ 318 (476)
|+++.+++++|.+.+.+ .+++|.++|++||++||+||+|++| +.+..... . ..+....+.++||.+| +
T Consensus 158 v~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLSLE-ELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCCHH-HHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 66655577788877544 4999999999999999999999988 55532222 1 2344445668999997 7
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+|+||+++++++++.+.. .....+++.|+++++++.++|+. .+..++.++.....++.+.+... ++. .+
T Consensus 237 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKA---FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 9999999999999988863 33445778899999999988873 33344444444444444444332 222 45
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
..|.++++.+.+ ..++.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 307 ~~~~~~~~~~~~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQN----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECSC----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECCC----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 677788877631 2567888887 899998752 346788887899999999999999
Q ss_pred HHHH
Q 011856 470 VKMR 473 (476)
Q Consensus 470 ~~~~ 473 (476)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8864
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=258.36 Aligned_cols=338 Identities=12% Similarity=0.122 Sum_probs=233.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|++++||.++. ..++ .+|.+.+++.++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|++
T Consensus 28 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 678899999885 3455 58999999999987642 2322 34677778887776543 4679999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.+ ..+++.|++.+++||++... +...|..+...+.....+. ..|+++|++.+++ ++++
T Consensus 105 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 166 (388)
T 1j32_A 105 NLMLAM--IEPGDEVIIPAPFWVSYPEM-VKLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTKL 166 (388)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCChhHHHH-HHHcCCEEEEecCCcccCC------------CCCHHHHHHhcCc---CceE
Confidence 999964 34567899999999885543 3344443322221100000 0179999999863 5788
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhh--ccCCCCchhhhhhhcC-CCCc
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQE--YFGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~--~~g~~pDi~t~sK~lg-~G~~ 321 (476)
|+++++++++|.+.+ ++.+++|.++|++||+++|+||+|+++ +.+.. .... ..+..+++.++||.++ +|+|
T Consensus 167 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 245 (388)
T 1j32_A 167 LVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccc
Confidence 887777777888765 566999999999999999999999988 54421 1111 1334455668999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+|++++++++++.+.. .....+++.+++++.++.++|+...+ ++..++++++.+++.+.|+++ . ++....+.
T Consensus 246 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~ 319 (388)
T 1j32_A 246 VGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKPD 319 (388)
T ss_dssp CEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCCC
T ss_pred eEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCC
Confidence 9999999999888762 33455778899999998888873221 334555666666666666543 1 22211122
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.|.++++.+... .....++.+.|++ +||++.++. ...+|+++.++++++++++++|+++++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 344444444210 0012567888876 799998763 35689988899999999999999999875
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-31 Score=265.68 Aligned_cols=336 Identities=13% Similarity=0.135 Sum_probs=231.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~ 168 (476)
+..+|||.+|.. +..++.++++.+++.+++++. ..|+. ..++++++++++.+.++ +.++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p-~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLP-NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCC-CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCC-CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 346899988864 334578899999999988763 22322 34566677777654444 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHh---
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (476)
+.+++.. ...++.|++.+++|+++...+ ...|..+ +.+|. .|+++|++.++
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~~-------------------~~v~~~~~g~d~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQY-------------------IQIPLDDEGMKVEILEEKLKELK 211 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEE-------------------EEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCEE-------------------EEeccCCCCCCHHHHHHHHhhhh
Confidence 9999953 345678999999999865443 2233322 22221 27999999997
Q ss_pred -cCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhhccCCCCchhhhhh
Q 011856 242 -NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGK 314 (476)
Q Consensus 242 -~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~~g~~pDi~t~sK 314 (476)
+. .++++|++.|+ +|++|.+. +.+++++|.++|++||++||+||+|+++ +.|.. ...+..+...++.+|||
T Consensus 212 ~~~-~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 212 SQG-KKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred ccC-CCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 42 36788766554 45577765 5667999999999999999999999888 54431 12222233445668999
Q ss_pred hcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 315 ~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
.+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. .+ ++..++++++.+++.+.|++....
T Consensus 290 ~~~~GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 290 ILAPGFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp TTCGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hccccccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988762 223345677999999988888642 11 233444445556666666543110
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~ 461 (476)
++....+..|.++++.+... ....++.+.|+++||++.|+. ...+|+++.. ++++|+
T Consensus 367 -g~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~ 432 (448)
T 3aow_A 367 -GVKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIM 432 (448)
T ss_dssp -TCEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHH
T ss_pred -CeEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHH
Confidence 22222234577788877421 012578889999999998752 3457887665 799999
Q ss_pred HHHHHHHHHHHHhh
Q 011856 462 HTITAAEKVKMRFL 475 (476)
Q Consensus 462 ~~~~~l~~~~~~~~ 475 (476)
+++++|++++++..
T Consensus 433 ~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 433 EGIKRLAETIKEEL 446 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=264.98 Aligned_cols=339 Identities=13% Similarity=0.090 Sum_probs=226.8
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~-e~v~~~~sGse 166 (476)
.+|+++|||.++. +.++ .+|.+.+++.+++++...++| ..+++.++++++.+.++ ++ +++++++||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688899999885 4556 789999999988765411222 23566667777655433 35 69999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ..+++.|++.+++||++...+. ..|..+...+.....++ . .|+++|++.++. +
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~i~~---~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDF---------F---NELERAIRESIP---K 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCH---------H---HHHHHHHHTEES---C
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCC---------C---CCHHHHHHhccc---C
Confidence 999999953 3345789999999998655443 33433222111100000 0 157788887763 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-ch-hhc---cCCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEY---FGVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~---~g~~pDi~t~sK~lg-~G 319 (476)
+++|+++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .. ... .+....+.++||.++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCVE-LDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 566666444566777654 566999999999999999999999988 54431 11 111 222333458999999 89
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+|+||+++++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++. ++.. +
T Consensus 252 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~ 323 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMV-E 323 (412)
T ss_dssp SCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCC-C
T ss_pred cceEEEEcCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEe-c
Confidence 999999999999988762 33445678899999999988874322 445666667777777777765 2221 2
Q ss_pred ee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 398 GY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 398 ~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
++ .|.++++.+... .. .....++.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 324 ~~~~g~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 324 NPKASMYVWAKIPEP-YA---------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393 (412)
T ss_dssp CCSBSSEEEEECCTT-TG---------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEEcCCc-cC---------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 33 355677776321 00 0012567788865 699998763 346789888899999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 394 ~l~~~ 398 (412)
T 2x5d_A 394 MFRAD 398 (412)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=261.46 Aligned_cols=327 Identities=16% Similarity=0.118 Sum_probs=216.5
Q ss_pred EcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHH
Q 011856 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLR 173 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~ 173 (476)
+.||+++|||.++. +++| .+|++.+++.+++++...| +.....++.+.++++++ ..+++++++||+++++.+++
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~ 94 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS 94 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence 46788999999886 4577 7899999999988653333 33334677777777775 46799999999999999999
Q ss_pred HHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
.+ .+++|++.+++||++...+. ..|..+...+.....++ +.++++.+.+. +++++|++.
T Consensus 95 ~~----~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~-------------~~l~~~~~~~~---~~~~~v~i~ 153 (364)
T 1lc5_A 95 GL----KPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFLC 153 (364)
T ss_dssp HH----CCSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEEE
T ss_pred Hc----CCCeEEEeCCCcHHHHHHHH-HcCCeEEEEeCCccccc-------------chhHHHHHhcc---CCCCEEEEe
Confidence 64 44889999999999655443 33433222111100011 00233333332 245555543
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc---cCCCCchhhhhhhcC-CCCcEEEEE-e
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYG-G 327 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~---~g~~pDi~t~sK~lg-~G~~iG~~~-~ 327 (476)
..++++|.+. +.+++++|.++|++||++||+||+|++| +.+.. ..+. ++....+.++||.++ +|+|+||++ +
T Consensus 154 ~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 231 (364)
T 1lc5_A 154 TPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS 231 (364)
T ss_dssp SSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred CCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEEEEEECchhhcCCccceEEEEEC
Confidence 3366677765 5667999999999999999999999888 43321 1222 222233458999999 899999999 9
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+ +++.....++.|.++++
T Consensus 232 ~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 232 DDAAMARMRRQ-----QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALC----QLPLLTVYPGRANYLLL 302 (364)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHH----TSTTEEECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----cCCCCEECCCCCeEEEE
Confidence 99998887631 23678899999988888763110 2233334444444544444 34323334567888887
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+..+ ..++.+.|+++||++.++. ...+|+++. +++++++++++|+++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC---
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhcc
Confidence 76421 1357788889999998864 245788865 6888999999999887653
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=256.40 Aligned_cols=330 Identities=13% Similarity=0.090 Sum_probs=232.2
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-----CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-----~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGse 166 (476)
|+++|||..+ ++....+|.+.+++.+++++. ..|+. ..+++.++++++.+.++ ++++|++++||++
T Consensus 34 ~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 4678999987 444447899999999998763 22321 24677788888876643 5789999999999
Q ss_pred HHHHHHHHHHhccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..+++.. ...+ +.|++.+++|+++...+ ...|..+...+... ..++ |+++|++.+++
T Consensus 111 al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~-- 171 (398)
T 3ele_A 111 SLSICFRAL--TSDAYDEFITIAPYFPEYKVFV-NAAGARLVEVPADTEHFQI--------------DFDALEERINA-- 171 (398)
T ss_dssp HHHHHHHHH--CCSTTCEEEEESSCCTHHHHHH-HHTTCEEEEECCCTTTSSC--------------CHHHHHHTCCT--
T ss_pred HHHHHHHHH--cCCCCCEEEEeCCCchhhHHHH-HHcCCEEEEEecCCcCCcC--------------CHHHHHHHhCc--
Confidence 999999953 3345 78999999998855433 33444333222211 0011 79999998863
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-ccccc--chhhccCCCCchhhhhhh
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKI 315 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pDi~t~sK~ 315 (476)
++++|+++.++|++|.+.+.++ +++|.++|++ ||++||+||+|++| +.+.. ...+.++....+.++||.
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGTVYSEET-IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 5778888766777888876555 9999999999 99999999999988 55532 222333333444589999
Q ss_pred cC-CCCcEEEEEecHHHHH------hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 316 IG-GGLPVGAYGGRRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 316 lg-~G~~iG~~~~~~~i~~------~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
++ +|+|+||+++++++++ .+.. .....++++.+++++.++.+.++ .....++++++.+++.+.|+++
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~- 323 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCG--AGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI- 323 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHH--HHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHH--HhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc-
Confidence 99 8999999999887432 2221 01122356677787777665553 4456788999999999999876
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 464 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~ 464 (476)
++....+..|.++++.+... ...++.+.|.++||++.++. ...+|+++.++++++++++
T Consensus 324 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l 386 (398)
T 3ele_A 324 ---GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSM 386 (398)
T ss_dssp ---TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred ---CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHH
Confidence 22222233455577766321 12567788899999998864 3568898889999999999
Q ss_pred HHHHHHHHHh
Q 011856 465 TAAEKVKMRF 474 (476)
Q Consensus 465 ~~l~~~~~~~ 474 (476)
++|+++++++
T Consensus 387 ~~l~~~l~~~ 396 (398)
T 3ele_A 387 PAFEKIYKKY 396 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=253.84 Aligned_cols=320 Identities=12% Similarity=0.047 Sum_probs=221.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
++++|||.+|. ++++ .+|++.+++.++++.. .+++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 31 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~- 104 (363)
T 3ffh_A 31 LTKITKLSSNE--NPLG-TSKKVAAIQANSSVET--EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL- 104 (363)
T ss_dssp CSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCC--CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEccCCC--CCCC-CCHHHHHHHHHHHHHh--hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-
Confidence 35789999884 4555 6899999998876542 34455556788888888776 5689999999999999999953
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
..++++|++.+++|+++...+ ...|..+...+...... -|+++|++.+++ ++++|++++++
T Consensus 105 -~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~~~v~~~~p~ 165 (363)
T 3ffh_A 105 -LDTTTNTVMATPTFVQYRQNA-LIEGAEVREIPLLQDGE--------------HDLEGMLNAIDE---KTTIVWICNPN 165 (363)
T ss_dssp -CSTTCEEEEEESSCHHHHHHH-HHHTCEEEEEECCTTSC--------------CCHHHHHHHCCT---TEEEEEEESSC
T ss_pred -ccCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCCCCCC--------------cCHHHHHHhccc---CCCEEEEeCCC
Confidence 346778999999998854433 33344332221111111 189999999863 67888888778
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc----hhhhhhhcC-CCCcEEEEEecHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD----i~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+++|.+.+.++ +.+|.++|++ |+++|+||+|++| + +...........+| +.++||.++ +|+|+|+++++++
T Consensus 166 nptG~~~~~~~-l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 166 NPTGNYIELAD-IQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp TTTCCCCCHHH-HHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCcCCCcCHHH-HHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 88898887333 5555555554 9999999999988 6 43322222222233 447999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. .+ ....++.|.++++.+.
T Consensus 243 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-~~~~~~~~~~~~~~~~ 313 (363)
T 3ffh_A 243 IIRQLNIV-----RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF---EK-VKLYPANGNFVLIDLG 313 (363)
T ss_dssp HHHHHHHT-----CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC---TT-CEECCCCSSEEEEECS
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC---CC-ceECCCCCeEEEEECC
Confidence 99988742 13678899999999999873211 334445555555555555541 22 2334667888877764
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
. ...++.+.|.++||++.++. ...+|+++. +++|+++++++|+++
T Consensus 314 ~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 314 I---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp S---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 2 12578889999999999864 346788876 999999999999876
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=263.62 Aligned_cols=338 Identities=14% Similarity=0.120 Sum_probs=224.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al 172 (476)
++++|||.++.. ++.|+.++.+.+++.+++++. ..|+ +.....++.+.++++++ +.++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYS-PTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCC-CCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 456789887764 455788999999999988752 2232 22223455555555553 4679999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE-E
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI-I 251 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v-i 251 (476)
+.. ..++++|++.+++||+....+. ..|..+...+... .+ .|+++|++.+++. ++++| +
T Consensus 109 ~~~--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~-~~--------------~d~~~l~~~l~~~--~~~~v~~ 168 (397)
T 2zyj_A 109 KVF--LDEGSPVLLEAPSYMGAIQAFR-LQGPRFLTVPAGE-EG--------------PDLDALEEVLKRE--RPRFLYL 168 (397)
T ss_dssp HHH--CCTTCEEEEEESCCHHHHHHHH-TTCCEEEEEEEET-TE--------------ECHHHHHHHHHHC--CCSCEEE
T ss_pred HHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEEEecCcCC-CC--------------CCHHHHHHHHhhc--CCeEEEE
Confidence 953 2345789999999998654432 2333222111000 00 2899999999753 45666 4
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCC------CchhhhhhhcCCCCcEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVT------PDLTTLGKIIGGGLPVG 323 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~------pDi~t~sK~lg~G~~iG 323 (476)
++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .....++.. ..+.++||.+++|+|+|
T Consensus 169 ~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G 247 (397)
T 2zyj_A 169 IPSFQNPTGGLTP-LPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVA 247 (397)
T ss_dssp CCBSCTTTCCBCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCE
T ss_pred CCCCcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeE
Confidence 4555666787764 566999999999999999999999988 55532 222222222 22458999999889999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
|+++++++++.+.. .....+++.|+++++++.++|+... + ++..++++++.+++.+.|++.... ++....+..
T Consensus 248 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~~~~~ 323 (397)
T 2zyj_A 248 FAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPK-EVRYTRPKG 323 (397)
T ss_dssp EEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TSEECCCSB
T ss_pred EEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEccCCc
Confidence 99999999888762 2233456678999998888876321 0 233344445555555555543110 222222455
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITAAEKVK 471 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~~~~~~l~~~~ 471 (476)
|.++++.+.... ...++.+.|+++||++.++. ...+|+++.. +++++++++++|++++
T Consensus 324 g~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 390 (397)
T 2zyj_A 324 GMFVWMELPKGL-------------SAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRAL 390 (397)
T ss_dssp SSEEEEECSTTC-------------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCC-------------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 778888774210 12578889999999998752 2457887665 7999999999999998
Q ss_pred HHhh
Q 011856 472 MRFL 475 (476)
Q Consensus 472 ~~~~ 475 (476)
+++.
T Consensus 391 ~~~~ 394 (397)
T 2zyj_A 391 KGLL 394 (397)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=259.47 Aligned_cols=344 Identities=13% Similarity=0.025 Sum_probs=231.7
Q ss_pred EcCCCEEEecccChhhcc--CCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC------CCCeEEEeCCHH
Q 011856 95 DIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP------SIEMVRFVNSGT 165 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~------~~e~v~~~~sGs 165 (476)
+.+|+.+|||..|.. .. -...+|.|.+|+.+++++....+| +.....++.+.+++++. ..++|++++||+
T Consensus 50 ~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t 128 (427)
T 3dyd_A 50 PNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCS 128 (427)
T ss_dssp CCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHH
T ss_pred ccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcH
Confidence 356889999998852 22 224789999999999987433233 33333445555555443 468999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+|++.+++.. ..+++.|++.+++|+++... +...|..+...++....+ .. -|+++|++.+++
T Consensus 129 ~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~---------~~---~d~~~l~~~l~~--- 190 (427)
T 3dyd_A 129 QAIDLCLAVL--ANPGQNILVPRPGFSLYKTL-AESMGIEVKLYNLLPEKS---------WE---IDLKQLEYLIDE--- 190 (427)
T ss_dssp HHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGGT---------TE---ECHHHHHSSCCT---
T ss_pred HHHHHHHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEecccccC---------CC---CCHHHHHHHhcc---
Confidence 9999999964 34677899999999885443 333343222111100000 00 178999888864
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GG 319 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G 319 (476)
++++|+++..+|++|.+.+ ++++++|.++|++||+++|+||+|.+| +.+.. .....++..++++ ++||.++ +|
T Consensus 191 ~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G 269 (427)
T 3dyd_A 191 KTACLIVNNPSNPCGSVFS-KRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG 269 (427)
T ss_dssp TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG
T ss_pred CCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC
Confidence 4666666655777887664 556999999999999999999999998 66543 2334455555555 8999987 68
Q ss_pred CcEEEEEec-------HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 320 LPVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 320 ~~iG~~~~~-------~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
+|+||++++ +++++.+.. . ...+++.++++++++.++|+.... ++..++++++.+++.+.|++
T Consensus 270 ~riG~~~~~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 342 (427)
T 3dyd_A 270 WRLGWILIHDRRDIFGNEIRDGLVK---L-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA--- 342 (427)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHH---H-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cceEEEEecCcchhhHHHHHHHHHH---H-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 999999887 467776652 1 223578899999999999985322 34455566666666666654
Q ss_pred hcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHH
Q 011856 390 KAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 390 ~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~ 463 (476)
++....+ +..|.++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+++++++++
T Consensus 343 -~~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~ 413 (427)
T 3dyd_A 343 -IPGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEA 413 (427)
T ss_dssp -STTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHH
T ss_pred -CCCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHH
Confidence 3322223 4556677777742110 11111246777775 7899998863 346799988999999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|++++++.
T Consensus 414 l~~l~~~l~~~ 424 (427)
T 3dyd_A 414 CSRIQEFCEQH 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=255.78 Aligned_cols=328 Identities=18% Similarity=0.148 Sum_probs=228.7
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
++||.++. ..++ .++.+.+++.+++++...|+ ......++.+.++++++ +++++++++||++|++.+++.+ ..
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~~ 100 (381)
T 1v2d_A 27 AVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYA-PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VG 100 (381)
T ss_dssp CEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CC
T ss_pred eEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CC
Confidence 68888775 3455 68999999999887622222 12234567777777765 5678999999999999999964 45
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++|++.+++||++.. .+...|..+...+..... +.. ..|+++|++.++. ++++|+++++++++
T Consensus 101 ~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~---~~d~~~l~~~l~~---~~~~v~~~~~~npt 165 (381)
T 1v2d_A 101 PGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGF---RLDLSALEKALTP---RTRALLLNTPMNPT 165 (381)
T ss_dssp TTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEE---ECCHHHHHTTCCT---TEEEEEEESSCTTT
T ss_pred CCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccC---CcCHHHHHHhcCc---CCEEEEECCCCCCC
Confidence 66889999999998654 333444432221110000 000 1279999988853 57888888777788
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc--chhh-ccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhh
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG--GAQE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~--~~~~-~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l 335 (476)
|.+.+ .+++++|.++|++||++||+||+|+++..|.. .... ..+..+++.++||.++ +|+|+||+++++++++.+
T Consensus 166 G~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 166 GLVFG-ERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRL 244 (381)
T ss_dssp CCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHH
Confidence 88765 56699999999999999999999998822321 1111 2455566678999998 799999999999998877
Q ss_pred cCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
.. .....+++.++++++++.++|+.. .+ ++..++++++.+++.+.|++. ++....+..|.++++.+...
T Consensus 245 ~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~ 317 (381)
T 1v2d_A 245 AG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELPGW 317 (381)
T ss_dssp HH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECTTC
T ss_pred HH---HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecChH
Confidence 62 223446788999999999999865 33 456667777777777777763 33222233466677665321
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ +.+.+.++||++.++. ...+|+++..+++++++++++|++++++.
T Consensus 318 ----------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 318 ----------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSP 371 (381)
T ss_dssp ----------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC---
T ss_pred ----------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 1 4566789999998752 34678888779999999999999987653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=256.65 Aligned_cols=334 Identities=14% Similarity=0.104 Sum_probs=230.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~-v~~~~sGseA~~~a 171 (476)
.++||..+. ..++ .+|++.+++.++++++. .|+. ..+++.++++++.+.++ ..++ +++++||++|++.+
T Consensus 27 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 568888775 3455 68999999999997642 2321 34677777777766543 4678 99999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..+++.|++.+++||+.... +...|..+...+.....+. .-|+++|++.+++ ++++|+
T Consensus 104 ~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v~ 165 (389)
T 1gd9_A 104 LSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEF------------RLNVDELKKYVTD---KTRALI 165 (389)
T ss_dssp HTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTT------------CCCHHHHHHHCCT---TEEEEE
T ss_pred HHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccCC------------CCCHHHHHHhcCc---CceEEE
Confidence 9842 33467899999999996543 3344443322211100000 0179999999864 577777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhcc-CC-CCc--hhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GV-TPD--LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~-g~-~pD--i~t~sK~lg-~G~~iG~ 324 (476)
++++++++|.+.+ ++.+++|.++|++||++||+||+|+++ +.+. ......+ +. ..| +.++||.++ +|+|+||
T Consensus 166 ~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 244 (389)
T 1gd9_A 166 INSPCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF 244 (389)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEE
T ss_pred EECCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEE
Confidence 7777777887764 556999999999999999999999988 5543 2222222 21 234 347999998 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+++++++++.+.. .....+++.+++++.++.++|+.... ++..++++++.+++.+.|+++ ++....+..
T Consensus 245 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 317 (389)
T 1gd9_A 245 VAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKPKG 317 (389)
T ss_dssp EECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCCCB
T ss_pred EEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCe
Confidence 9999999888763 23445678899999998888864322 334555666666666666654 222212233
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
|.++++.+.... ....++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 318 ~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 318 AFYIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp TTEECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeccCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 555665553200 01256788888 8999998763 3468998888999999999999999876
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 386 ~ 386 (389)
T 1gd9_A 386 R 386 (389)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=258.52 Aligned_cols=332 Identities=15% Similarity=0.144 Sum_probs=232.4
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
.|++++||.++. ..+++ +|.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 467889998885 34564 7999999999987642 2321 34667777777765433 4679999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ..+++.|++.+++|+++...+ ...|..+...+.....+. .-|+++|++.+++ ++++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 177 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQI-ILAGGTVNVVETFMSKNF------------QPSLEEVEGLLVG---KTKA 177 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECCGGGTT------------CCCHHHHHHTCCT---TEEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEecCCccCC------------CCCHHHHHHhccc---CceE
Confidence 999953 345678999999999865433 334443322111100000 0178999998864 5777
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccC--CCCc--hhhhhhhcC-CCCcEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPD--LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g--~~pD--i~t~sK~lg-~G~~iG 323 (476)
|+++++++++|.+.+ ++++++|.++|++||++||+||+|+++ ..+.......+. ...| +.++||.++ +|+|+|
T Consensus 178 v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 256 (389)
T 1o4s_A 178 VLINSPNNPTGVVYR-REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 256 (389)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceE
Confidence 877777777887764 566999999999999999999999988 544222222221 1224 447999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeecee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (476)
|+++++++++.+.. .....+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ ...+. .+..|.+
T Consensus 257 ~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~ 328 (389)
T 1o4s_A 257 YLISSEKVATAVSK---IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFY 328 (389)
T ss_dssp EEECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSE
T ss_pred EEEeCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceE
Confidence 99999999888762 334456788999998888877532 2556777888888888888775 22221 1233556
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+++.+. . + ..++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 329 ~~~~~~-~-----------~---~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 329 LFFKVR-G-----------D---DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEECS-S-----------C---HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeCC-C-----------C---HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 666653 0 1 256788887 8899998763 2467888888999999999999988753
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=254.96 Aligned_cols=355 Identities=14% Similarity=0.089 Sum_probs=234.0
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~---~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
.+|||..|. ..++ .+|.+.+++.+++.++. .|+. ..+++.++++++.+.++ .+ ++|++++||++|++
T Consensus 29 ~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 568888874 2333 68999999999998642 3322 24677888888876553 23 68999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC---CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
.+++.. ..+++.|++.+++||++... +...|..+...+... ..|.... ..... -|+++|++.+++ +
T Consensus 106 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~~---~ 174 (422)
T 3fvs_A 106 TAFQAL--VDEGDEVIIIEPFFDCYEPM-TMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFTS---R 174 (422)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCCT---T
T ss_pred HHHHHH--cCCCCEEEEcCCCchhhHHH-HHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcCC---C
Confidence 999953 45667899999999995543 334444333222211 0110000 00000 178999988863 6
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc----CCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----g~~pDi~t~sK~lg-~G 319 (476)
+++|++++++|++|.+. +++.+++|.++|++||++||+||+|++| +.+.. .....+ +....+.++||.++ +|
T Consensus 175 ~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 253 (422)
T 3fvs_A 175 TKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG 253 (422)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG
T ss_pred ceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc
Confidence 78888887788888887 4555999999999999999999999988 65532 122222 22233458999999 79
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+|+||+++++++++.+. ......+++.++++++++.++|+. ...+++.+++++..+..++.|.+...++++.
T Consensus 254 ~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 330 (422)
T 3fvs_A 254 WKVGWVLGPDHIMKHLR---TVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK 330 (422)
T ss_dssp GCCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ceEEEEEeCHHHHHHHH---HHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999988876 233456788899999999999975 1123444444444444444444444444554
Q ss_pred eEeeeeceeEEEEEecCCCcCchhh-cccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~ 461 (476)
...+..|.++++.+...... .... ...+.....++...++ ++||++.++. ...+|+++.+++++|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~ 409 (422)
T 3fvs_A 331 PIIPQGSYFLITDISDFKRK-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQ 409 (422)
T ss_dssp EEBCSBSSEEEEECHHHHHH-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHH
T ss_pred ecCCCeeeEEEEechhhccc-ccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHH
Confidence 44556777778776431000 0000 0000001246666655 5799998753 2457899999999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++++
T Consensus 410 ~~l~~l~~~l~~ 421 (422)
T 3fvs_A 410 AMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=264.03 Aligned_cols=333 Identities=15% Similarity=0.086 Sum_probs=212.9
Q ss_pred EEEcCCCEEEecccChhhccCC--CCcHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEE--
Q 011856 93 MWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAVP---SIEMVRF-- 160 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~l~~~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~-- 160 (476)
..+..|+++|||..|...++.+ +.+|.+.+++.+++++...++| + .++++++++++..... +.++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 99 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQ 99 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEe
Confidence 3344567899999996545555 4679999999998875322222 2 3445555555533221 2688998
Q ss_pred eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---C----CH
Q 011856 161 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---N----DV 233 (476)
Q Consensus 161 ~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----d~ 233 (476)
++||++|++.++++++.+.+++.|++.+++||++...+. ..|..+ +.+|. + |+
T Consensus 100 ~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~~~~~~~~~~~~d~ 159 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-SAGLEV-------------------REYAYYDAENHTLDF 159 (396)
T ss_dssp ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-HTTCEE-------------------EEEECEETTTTEECH
T ss_pred cccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-HcCCce-------------------EEEecccCCCCCcCH
Confidence 999999999999876555677899999999999654443 233322 22222 1 79
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhccCCCCc--
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFGVTPD-- 308 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~g~~pD-- 308 (476)
++|++.+++++++++++++...++++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+...+|
T Consensus 160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2q7w_A 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPT-LEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence 9999999764334666776666667777654 566999999999999999999999988 543 2222222221122
Q ss_pred --hhhhhhhcC-CCCcEEEEEe---cHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHH
Q 011856 309 --LTTLGKIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTY 370 (476)
Q Consensus 309 --i~t~sK~lg-~G~~iG~~~~---~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~ 370 (476)
+.++||.++ +|+|+||+++ +++ +++.+.. .....+.+.|+++++++.++|+.. .+ ++..
T Consensus 239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~ 315 (396)
T 2q7w_A 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR 315 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 337999999 7999999986 563 4444431 111222344899999988887532 11 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceE
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 450 (476)
++++++.+++.+.|+++.....+....+..|.++++.+. . ..+...+.++||++.++ +|
T Consensus 316 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~l~~~gv~v~~~----~R 374 (396)
T 2q7w_A 316 QRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT--------------K---EQVLRLREEFGVYAVAS----GR 374 (396)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC--------------H---HHHHHHHHHHCEECCTT----CE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC--------------H---HHHHHHHHhcCeeecCC----ce
Confidence 566677777777776653110122112233555444331 1 24556667889999874 57
Q ss_pred EeCCC-cHHHHHHHHHHHHHH
Q 011856 451 TSLAH-SSDDIQHTITAAEKV 470 (476)
Q Consensus 451 ~~~~~-t~e~i~~~~~~l~~~ 470 (476)
+++.. +++++++++++|+++
T Consensus 375 is~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 375 VNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp EEGGGCCTTTHHHHHHHHHHH
T ss_pred EEEeecCHHHHHHHHHHHHhc
Confidence 76654 999999999999876
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=262.48 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=229.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~---~~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA 167 (476)
.|+++|||.++. +.+| .+|.+.+++.+++++. ..|. ...+++.++++++.+.++ ++ ++|++++||++|
T Consensus 45 ~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 478899999886 3566 6899999999987542 1222 234566777777765544 23 799999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.+++.. ..+++.|++.+++||++...+ ...|..+...+... .++ ..|+++|++.++. ++
T Consensus 122 l~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~ 182 (404)
T 2o1b_A 122 LVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHY------------LPDWSKVDSQIID---KT 182 (404)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTC------------CCCGGGSCHHHHH---HE
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccC------------cCCHHHHHHhhcc---Cc
Confidence 99999953 234578999999999966544 33444333222111 111 0267888888863 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhc---cCCCCchhhhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
++|+++..++++|.+. +.+++++|.++|++||++||+||+|++| +.+... .... .+....+.++||.++ +|+|
T Consensus 183 ~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (404)
T 2o1b_A 183 KLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFR 261 (404)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGC
T ss_pred eEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhh
Confidence 7887776666788776 4666999999999999999999999988 544211 1111 122233458999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++. ++......
T Consensus 262 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 334 (404)
T 2o1b_A 262 VGFAVGNKDMIQALKK---YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHAK 334 (404)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCC
T ss_pred eEeEecCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCCC
Confidence 9999999999988762 23344678899999999999876321 344555666666666666653 33222223
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.|.++++.+... . ...++.+.|+ ++||++.++. ...+|+++..+++++++++++|+++++
T Consensus 335 ~g~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 335 GGIYVWLETPPG-Y------------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp BSSEEEEECCTT-C------------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred cceEEEEeCCCC-C------------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 355677777421 0 1246777877 5799998763 346788888899999999999998876
Q ss_pred H
Q 011856 473 R 473 (476)
Q Consensus 473 ~ 473 (476)
+
T Consensus 402 ~ 402 (404)
T 2o1b_A 402 L 402 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=259.12 Aligned_cols=341 Identities=13% Similarity=0.166 Sum_probs=234.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC----CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP----SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~----~~e~v~~~~sGse 166 (476)
++++|||.++.. ++.|+.++.+.+++.+++++. ..|+. ..+++.++++++.+.++ +.++|++++||++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 457899998864 456889999999999998752 23322 34677778887766532 4579999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--- 243 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 243 (476)
|++.+++.. ..+++.|++.+++||++...+. ..|..+...+... .+ .|+++|++.+++.
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAFR-QYLANFVVVPLED-DG--------------MDLNVLERKLSEFDKN 182 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-TTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEEEEeccCC-CC--------------CCHHHHHHHHHhhhhc
Confidence 999999953 2345789999999998654432 2333222111100 00 2899999998741
Q ss_pred --CCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCC---chhhhhhh
Q 011856 244 --KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTP---DLTTLGKI 315 (476)
Q Consensus 244 --~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~p---Di~t~sK~ 315 (476)
+.++++|+ +...++++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. .....++..+ .+.++||.
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~ 261 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTS-LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV 261 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred ccCCCceEEEECCCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccc
Confidence 12577774 4555566787754 566999999999999999999999988 54432 2222222222 24489999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++ ++..++++++.+++.+.|++....+
T Consensus 262 ~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 338 (425)
T 1vp4_A 262 LAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI 338 (425)
T ss_dssp TCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9989999999999999888762 223345667999999999999864 11 3455666677777777777652211
Q ss_pred -CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHH
Q 011856 392 -GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (476)
Q Consensus 392 -~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~ 461 (476)
++....+..|.++++.+.... + ..++.+.|+++||++.++. ...+|+++.. ++++++
T Consensus 339 ~g~~~~~~~~g~~~~~~~~~~~----------~---~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~ 405 (425)
T 1vp4_A 339 PGVKWVKSEGGLFIWLTLPEGF----------D---TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV 405 (425)
T ss_dssp TTCEECCCSBSSEEEEECCTTC----------C---TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred CceEEecCCccEEEEEEcCCCC----------C---HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence 122222455778888874310 0 1356788888899998752 2457887665 799999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|+++++++
T Consensus 406 ~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 406 EGIKRLREVVLEY 418 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=251.94 Aligned_cols=329 Identities=15% Similarity=0.111 Sum_probs=225.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
.+|||..+. ..++ .+|.+.+++.++++++ ..|.. ..+++.++++++.+.++ +.+ ++++++||++|++.+
T Consensus 31 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 367887774 3455 6899999999998763 22322 34667777777766443 467 999999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..++++|++.+++||++.. .+...|..+...+...... ..|+++|++.++ +++++|+
T Consensus 108 ~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~---~~~~~v~ 168 (386)
T 1u08_A 108 ITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLS---ERTRLVI 168 (386)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCC---TTEEEEE
T ss_pred HHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccC-------------cCCHHHHHHhhc---ccCEEEE
Confidence 9953 3456789999999998554 3334444332221110000 128999999885 2678888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhh-ccCCCCchhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQE-YFGVTPDLTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~-~~g~~pDi~t~sK~lg-~G~~iG~ 324 (476)
++++++++|.+.+ .+++++|.++|++||++||+||+|++| +.|.. .... ..+....+.++||.++ +|+|+||
T Consensus 169 l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATVWQ-QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 8777777887765 556999999999999999999999988 54421 1111 2344445668999999 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+.. .....+++.++++++++.++|+..++ ++..++++++.+++.+.|++ .++....+..|.
T Consensus 248 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~ 320 (386)
T 1u08_A 248 CVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE----SRLEILPCEGTY 320 (386)
T ss_dssp EECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS----SSCEECCCCBSS
T ss_pred EEcCHHHHHHHHH---HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCceE
Confidence 9999999888762 23345678889999999888875421 34455555555555555543 343322233466
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
++++.+..... ....++.+.|+ ++||++.++. ...+|+++..++++|++++++|++
T Consensus 321 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVST-----------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTCC-----------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEecCCCCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 77877642100 01246777776 6899998752 245788888899999999999864
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=258.55 Aligned_cols=345 Identities=10% Similarity=0.012 Sum_probs=236.8
Q ss_pred ecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CCCeEE
Q 011856 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SIEMVR 159 (476)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~e~v~ 159 (476)
.....++|.+|+++|||.++. +.++ .+|++.+++.+++.+.. .|.. ..+++.++++++.+.++ ..++++
T Consensus 33 ~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 33 ALVTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 444556677899999999986 3444 78999999999998532 2322 23667777777765432 468999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCc--eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
+++||++|++.+++....+.+++ +|++.+++|+++...+. ..|..+...+.. ..+. .-|+++|+
T Consensus 110 ~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~~~------------~~d~~~l~ 175 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-ILGQKFESFDLF-EYRG------------EKLREKLE 175 (437)
T ss_dssp EESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-HHTCCCEEEEGG-GGCT------------THHHHHHH
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-HcCCEEEEEeec-CCCC------------ccCHHHHH
Confidence 99999999999999542114556 79999999998654443 334332221110 0000 01789999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc---------hhhc-cCCC
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---------AQEY-FGVT 306 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---------~~~~-~g~~ 306 (476)
+.+++. ++++|+++.+++++|.+.+.++ +++|.++|++||++||+||+|+++ ..+... .... .+..
T Consensus 176 ~~l~~~--~~~~v~l~~p~nptG~~~~~~~-l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T 3g0t_A 176 SYLQTG--QFCSIIYSNPNNPTWQCMTDEE-LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNY 252 (437)
T ss_dssp HHHTTT--CCCEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCE
T ss_pred HHHhcC--CceEEEEeCCCCCCCCcCCHHH-HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcE
Confidence 999432 4555655444677888776555 999999999999999999999887 432211 1111 2222
Q ss_pred CchhhhhhhcC-CCCcEEEEEecHHHHH-h-----------------hcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-
Q 011856 307 PDLTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 366 (476)
Q Consensus 307 pDi~t~sK~lg-~G~~iG~~~~~~~i~~-~-----------------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 366 (476)
..+.++||.++ +|+|+||+++++++++ . +. ......+++.++++++++.++|+....
T Consensus 253 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (437)
T 3g0t_A 253 ILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS---SALYALSSGATHSAQWGMAAMLKACNDG 329 (437)
T ss_dssp EEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT---THHHHHHSSSCHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH---HHHhhhcCCCCHHHHHHHHHHHhCcHhH
Confidence 23447999999 8999999999999998 7 65 233444678899999999999987642
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHhhhcCCceE------ee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 367 ----PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 367 ----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
++..++++++.+++.+.|+++ ++... .+ ..|.++++.+... ...++.+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~ 391 (437)
T 3g0t_A 330 EYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKGM--------------DSSKLIEKFV 391 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETTC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCCC--------------CHHHHHHHHH
Confidence 344556666666666666554 32222 23 5677777777410 1257888999
Q ss_pred HCCeEeccCCC------cceEEeCCC-cHHHHHHHHHHHHHHHHH
Q 011856 436 EEGVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 436 ~~Gv~~~~~~~------~~~~~~~~~-t~e~i~~~~~~l~~~~~~ 473 (476)
++||++.++.. ..+|+++.. +++++++++++|++++++
T Consensus 392 ~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 392 RYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred HcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999988742 457887655 999999999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=254.84 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=216.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 122 ~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+++.+++..+...+++.....+|.+.+++++. +++++++++||++|++.+++.. ..+++.|++.+++|++.... +
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45556665543333344445678888888762 6789999999999999999953 34567899999999885443 3
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...|..+...+.....+. . -|+++|++.++. ++++|+++++++++|.+.+ ++++++|.++|++|
T Consensus 123 ~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~-~~~l~~i~~la~~~ 186 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGW---------L---PDLEKLRQLIRP---TTKMICINNANNPTGAVMD-RTYLEELVEIASEV 186 (375)
T ss_dssp HHTTCEEEEEEEEGGGTT---------E---ECHHHHHHHCCT---TCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeccccCCC---------C---CCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCC-HHHHHHHHHHHHHc
Confidence 333432221111000000 0 189999999863 6778888888888888765 55599999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+++ +.+.....+.++..+++.++||.++ +|+|+||+++++++++.+.. .....+++.+++.++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 263 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRD---YRDYTMICAGVFDDLVA 263 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTT---TGGGTTSCCCHHHHHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHH---HHhhhccCCCcHHHHHH
Confidence 9999999999988 5433334455666677779999999 79999999999999999873 34556778899999999
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 358 IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 358 ~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
.++|+..++ ++..++++++.+++.+.|++ ++....+.. .|.+.++.+.... ...++.+.+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l 326 (375)
T 3op7_A 264 QLALAHYQEILERNRHILEENLAILDQWIEE----EPLVSYIRPAVVSTSFVKIAVDM-------------PMEDFCLQL 326 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECCCSSSSCEEEEECCSS-------------CHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CCCceEecCCCeEEEeEEcCCCC-------------CHHHHHHHH
Confidence 988874322 22333334444444444443 433333333 3445555553210 124666776
Q ss_pred -HHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 435 -LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 435 -~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++||++.++. ...+|+++..+++++++++++|+++++++
T Consensus 327 l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 327 LQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGGG
T ss_pred HHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 58899998864 35688998888899999999999998765
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=253.42 Aligned_cols=321 Identities=15% Similarity=0.105 Sum_probs=222.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al 172 (476)
.+|+.+|||.++. +.++ .+|+|.+++.++++++ ..++|+.....++.++++++++ ..+++++++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678899999884 3344 7899999999998874 1233443334677777777765 5789999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ...++.|++.+++|++....+ ...|..+...+.. .+. ++ +++++.. +.+++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~--------------~~---~~l~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTLA-EVQGARVRTFGLT--GDF--------------RI---AGFPERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHHH-HHHTCEEEEECBC--TTS--------------SB---TTCCSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHHH-HHCCCEEEEeeCC--CCC--------------CH---HHHHhhc--CCCEEEE
Confidence 953 344578999999998855433 3334433221111 000 11 2222221 2336666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHH
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+.+++++|.+.+ +++|.++|+++|++||+||+|++| +.+.....+..+....+.++||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 666788899999 888999999999999999999987 4332222233333344558999998 7999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ ++ ...++.|.++++.+.
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDKI-----RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GY-DVIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHH-----SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TC-EECCCSSSEEEEECT
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CC-EEcCCCccEEEEECC
Confidence 99888631 23577899999999999874221 345556666666666666654 32 234567778777653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC----cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.. ...++.+.|.++||++.++.. ..+|+++. +++|+++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 125778889999999988652 56788876 99999999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=251.99 Aligned_cols=351 Identities=13% Similarity=0.040 Sum_probs=229.9
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
..+|||..+. ..++ .+|.|.+++.+++.+.. .|+. ..+++.++++++.+.++ .+ ++|++++||++|++
T Consensus 23 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 3568888773 2233 68999999999987532 2322 34677778888776543 34 79999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
.+++.. ..+++.|++..++|+++... +...|..+...+... ..+.. ....... -|+++|++.++. ++
T Consensus 100 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~g~~--~~~~~~~---~d~~~l~~~~~~---~~ 168 (410)
T 3e2y_A 100 NSIQGL--VDPGDEVIIMVPFYDCYEPM-VRMAGAVPVFIPLRSKPTDGMK--WTSSDWT---FDPRELESKFSS---KT 168 (410)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEECCCCSSC--CBGGGEE---CCHHHHHTTCCT---TE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecccccccccc--ccccCCc---CCHHHHHhhcCC---Cc
Confidence 999953 34567899999999885543 334444332221110 00000 0000011 178999888853 68
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccC----CCCchhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG----VTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g----~~pDi~t~sK~lg-~G~ 320 (476)
++|+++++++++|.+.+ ++.+++|.++|++||++||+||+|++| +.+.. .....+. ...++.++||.++ +|+
T Consensus 169 ~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 247 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYT-RQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW 247 (410)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG
T ss_pred eEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc
Confidence 88888888888888775 445999999999999999999999988 65532 1222222 2233447999999 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+. ......+++.++++++++.++|+. ...++..+++++..+..++.|.+...++++..
T Consensus 248 r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 324 (410)
T 3e2y_A 248 KLGWSIGPAHLIKHLQ---TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKP 324 (410)
T ss_dssp CCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred eEEEEEECHHHHHHHH---HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 9999999999998876 333556788899999999999874 11244444444444444444444444445554
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-----------CcceEEeCCCcHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (476)
..+..|.++++.+..... .+.. ...+.....++...+ .++||++.++. ...+|+++.+++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~ 402 (410)
T 3e2y_A 325 IVPDGGYFIIADVSSLGA-DLSD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAA 402 (410)
T ss_dssp EBCSBSSEEEEECGGGCC-CCTT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHH
T ss_pred cCCCccEEEEEEchhhhc-cccc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence 556677788887753210 0000 000011123556655 46799998753 145789999999999999
Q ss_pred HHHHHH
Q 011856 464 ITAAEK 469 (476)
Q Consensus 464 ~~~l~~ 469 (476)
+++|++
T Consensus 403 l~~l~~ 408 (410)
T 3e2y_A 403 EEIFRA 408 (410)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999975
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=253.53 Aligned_cols=334 Identities=16% Similarity=0.131 Sum_probs=229.6
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~al 172 (476)
+|||..+. ..++ .+|.+.+++.++++++ ..|.. ..+++.++++++.+.++ ..+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 68888775 3455 6899999999999863 22322 24677777777766543 466 9999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.+ ..+++.|++.+++||+.... +...|..+...+.... . .... .|+++|++.++. ++++|++
T Consensus 104 ~~~--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~-~-------~~~~---~d~~~l~~~l~~---~~~~v~l 166 (411)
T 2o0r_A 104 LGL--VEPGSEVLLIEPFYDSYSPV-VAMAGAHRVTVPLVPD-G-------RGFA---LDADALRRAVTP---RTRALII 166 (411)
T ss_dssp HHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEEE-T-------TEEE---CCHHHHHHHCCT---TEEEEEE
T ss_pred HHh--cCCCCEEEEeCCCcHhHHHH-HHHcCCEEEEeecccc-c-------cCCC---CCHHHHHHhhcc---CceEEEE
Confidence 964 34567899999999986443 3344443222111000 0 0000 389999999863 6788888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhc----cCCCCchhhhhhhcC-CCCcEEEE
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAY 325 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~----~g~~pDi~t~sK~lg-~G~~iG~~ 325 (476)
+++++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. ..... .+....+.++||.++ +|+|+||+
T Consensus 167 ~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (411)
T 2o0r_A 167 NSPHNPTGAVLS-ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 245 (411)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence 877788887765 566999999999999999999999988 55431 11111 222333458999998 89999999
Q ss_pred EecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeecee
Q 011856 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (476)
Q Consensus 326 ~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (476)
++++++++.+.. .....+++.++++++++.++|+...+ ++..++++++.+++.+.|++. ++....+..|.+
T Consensus 246 ~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~ 318 (411)
T 2o0r_A 246 CGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYF 318 (411)
T ss_dssp ECCHHHHHHHHH---HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSE
T ss_pred eeCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEE
Confidence 999999888762 23344667788888888888875422 445666677777777777664 332222334667
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC-----------------CcceEEeCCCcHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------------~~~~~~~~~~t~e~i~~~~~ 465 (476)
+++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++++++++
T Consensus 319 ~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~ 387 (411)
T 2o0r_A 319 LCADPRPLG--Y---------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIR 387 (411)
T ss_dssp EEEECGGGT--C---------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHH
T ss_pred EEEecCCCC--C---------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHH
Confidence 787774310 0 01246777776 6799997641 23578988889999999999
Q ss_pred HHHHHHHH
Q 011856 466 AAEKVKMR 473 (476)
Q Consensus 466 ~l~~~~~~ 473 (476)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887654
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=259.08 Aligned_cols=348 Identities=11% Similarity=0.059 Sum_probs=224.5
Q ss_pred EEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-------------CCC---CCCHHHHHHHHHHHhhCC----
Q 011856 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-------------SFG---APCLLENVLAEMVISAVP---- 153 (476)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-------------~~~---~~~~~~~~la~~l~~~~~---- 153 (476)
||.++|.+.++..+...+.++ ++.+.+++.++..... .|+ +..++++++++++.+...
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 677777766655665545555 7888888877654211 122 124667777777764321
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 154 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 154 -~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
..+++++++||++|++.+++.. ...++.|++.+++|++....+....|..+...++....++ .-|
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d 174 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGF------------QIT 174 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTS------------CCC
T ss_pred CCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCC------------cCC
Confidence 4789999999999999999953 2345778888888877544332133432222111100000 017
Q ss_pred HHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccC---
Q 011856 233 VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFG--- 304 (476)
Q Consensus 233 ~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g--- 304 (476)
+++|++.+++ ...++++|+++++++++|.+.+.+ .+++|.++|++||++||+||+|+++ +.+..+ ....++
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 253 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRN-ELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDR 253 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccc
Confidence 9999999875 223678888877777888876644 4999999999999999999999887 544322 111111
Q ss_pred -CC-----Cc----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----C
Q 011856 305 -VT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----P 367 (476)
Q Consensus 305 -~~-----pD----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~ 367 (476)
+. +| +.++||++| +|+|+||+++ ++++++.+.. +..++..++++++++.++++.... +
T Consensus 254 ~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (435)
T 3piu_A 254 NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKKLTKNYIA 328 (435)
T ss_dssp ------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChHHHHHHHH
Confidence 11 34 448999999 8999999998 5677776652 223445678888888877763211 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC-
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ- 445 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~- 445 (476)
+..++++++.+++++.|++ .++.......|.++++.+..... .+......++.+.|+++ ||++.++.
T Consensus 329 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~~g~~ 397 (435)
T 3piu_A 329 ENHKRLKQRQKKLVSGLQK----SGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMELWKKIVYEVHLNISPGSS 397 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCcccCCCeeEEEEEEcccccc-------cCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence 3344455555555555544 33332223345788888753210 01122345788888877 99998753
Q ss_pred -----CcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 446 -----FEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 -----~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++.. +++++++++++|+++++++
T Consensus 398 ~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 398 CHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp GTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 3457887766 9999999999999998865
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=245.14 Aligned_cols=319 Identities=15% Similarity=0.121 Sum_probs=225.6
Q ss_pred EecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCCC--CHHHHHHHHHHHhh--CC-CCCeEEEeCCHHHHHHHHH
Q 011856 102 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAP--CLLENVLAEMVISA--VP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~~--~~~~~~la~~l~~~--~~-~~e~v~~~~sGseA~~~al 172 (476)
|||.++. ++++ .+|++.+++.+++++. ..|..+ .+++.++++++.+. ++ ..++|++++|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3466 7899999999998762 222211 23444444444433 44 5689999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ..+++.|++.+++||++... +...|..+...+.. .+. ..|+++|++.++++ ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPIL-AKGTHTEFIAVSRG--ADF------------RIDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHH-HHHTTCEEEEEECC--TTS------------SCCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCC--cCC------------CCCHHHHHHHhhcc--CCCEEEE
Confidence 853 34567899999999886543 33344433221111 100 12799999998752 4677888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccC-CCCchhhhhhhcC-CCCcEEEEEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g-~~pDi~t~sK~lg-~G~~iG~~~~~ 328 (476)
+++++++|.+.+ ++++.++|+.++++||+||+|+++ +...... .+.++ ....+.++||.++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 888888999988 788889999999999999999888 4322221 12233 3345668999998 79999999999
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
+++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 247 ~~~~~~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLV-----RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYA-VVPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTT-----SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCE-EECCSSSEEEEE
T ss_pred HHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 9999888742 12467899999999999875322 566777778888888887763 322 235667788776
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+.. + ..++.+.|.++||++.+++ ...+|+++. +++|+++++++|+++++
T Consensus 317 ~~~------------~---~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS------------D---QHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS------------S---HHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC------------C---HHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 631 1 2567888899999999874 346788876 89999999999998875
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=255.84 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=228.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.+|++++||.++. ..++ .+|.+.+++ ++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3678899998885 2445 578999999 8886542 2322 34677788888776542 458999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC-HHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~ 247 (476)
+.+++.+ ..+++.|++.+++||++... +...|..+...+.....++ + +++|++.+++ ++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~~---~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFINE---RT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCCT---TE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhCc---CC
Confidence 9999963 34567899999999986543 3334443222111100010 1 4566666653 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchh--hhhhhcC-CCCcE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIG-GGLPV 322 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~--t~sK~lg-~G~~i 322 (476)
++|+++++++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+..... ..++ ..|++ ++||.++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVYG-KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 88888777777888764 566999999999999999999999988 55432221 1223 23654 7899998 79999
Q ss_pred EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eee
Q 011856 323 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 398 (476)
Q Consensus 323 G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~ 398 (476)
|++++++ ++++.+.. .....+ +.++++++++.++|+...+ +++.++++++.+++.+.|+++ ++.. ..+
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999998 89888762 223334 7789999998888853211 345566677777777777664 2222 123
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC------CeEeccCC---------CcceEEeCCCcHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~~---------~~~~~~~~~~t~e~i~~~ 463 (476)
..|.++++.+... + ..++.+.|+++ ||++.++. ...+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~~-----------~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPVE-----------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSSS-----------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCCC-----------C---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 3466666666310 1 25678888887 99998752 346788888999999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|+++++++
T Consensus 392 ~~~l~~~l~~~ 402 (409)
T 2gb3_A 392 IDVLMEGLKMF 402 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=257.44 Aligned_cols=342 Identities=13% Similarity=0.033 Sum_probs=219.8
Q ss_pred CCEEEecccChhhccCCC--CcHHHHHHHHHHHHh-cCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEE--eCCH
Q 011856 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK-GTSFGA-P----CLLENVLAEMVISAVP---SIEMVRF--VNSG 164 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~-~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~--~~sG 164 (476)
|+.++||..|...++.|+ .+|.+.+++.+++.+ ...++| + .++++++++++....+ ..++|++ ++||
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 566789888854334444 458999999988732 122222 3 3444555555533221 3589999 9999
Q ss_pred HHHHHHHHHHHHhccCC-----ceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 165 TEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 165 seA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++|++.++++++.+.++ +.|++.+++||++...+ ...|.. +...+.....+. . .|+++|++
T Consensus 109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~---------~---~d~~~l~~ 175 (412)
T 1ajs_A 109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF-TTAGFKDIRSYRYWDTEKR---------G---LDLQGFLS 175 (412)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH-HHTTCSCEEEEECEETTTT---------E---ECHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHH-HHcCCceeEEEeeecCCCC---------c---cCHHHHHH
Confidence 99999998865555556 78999999999865443 333433 322111000000 0 17999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc---ccchhhccCCCCc----hh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----LT 310 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~~~~g~~pD----i~ 310 (476)
.+++++.++.+++++..++++|.+. +.+++++|.++|++||++||+||+|.+| +.+ .......+...+| +.
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQ 254 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEE
Confidence 9976444566666555566677654 5666999999999999999999999998 654 3323332221233 34
Q ss_pred hhhhhcCC-CCcEEEEEe---cHHHHHhhcCCCCccccCCCC-CcHHHHHHHHHHHHHhc-------C-CCHHHHHHHHH
Q 011856 311 TLGKIIGG-GLPVGAYGG---RRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK-------E-PGTYEYLNKIT 377 (476)
Q Consensus 311 t~sK~lg~-G~~iG~~~~---~~~i~~~l~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-------~-~~~~~~~~~~~ 377 (476)
++||.++. |+|+||+++ ++++++.+...-...+..+++ .|+++++++.++|+... . ++..++++++.
T Consensus 255 s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (412)
T 1ajs_A 255 SFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMR 334 (412)
T ss_dssp ECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHH
Confidence 89999996 999999998 887444321100011223444 58999999999887542 1 45667777777
Q ss_pred HHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-Cc
Q 011856 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t 456 (476)
+++.+.|+++....++....+..|.++++.+. ...+...+.++||++.++ +|+++. .+
T Consensus 335 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~~ 393 (412)
T 1ajs_A 335 SELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRINMCGLT 393 (412)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEEGGGCC
T ss_pred HHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEEeeeCC
Confidence 88887777653100122112233444443321 133445566889999874 588766 49
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 394 ~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 394 TKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp TTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=246.52 Aligned_cols=324 Identities=15% Similarity=0.068 Sum_probs=213.4
Q ss_pred EeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCH
Q 011856 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 164 (476)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sG 164 (476)
.+++|.+++|.+|+++|||.++. ++++ .+|++.+++.+++..... |+.....++.++++++++ .++++++++||
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRH--YPEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGS--CCCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhc--CCCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46889999999999999999885 4555 789999999988854332 333333678888888886 56899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcC
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN 243 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~ 243 (476)
++|+..+++. +. ++.|++.+++|++.... +...|.. ++.++. ++.+.+.
T Consensus 77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~-~~~~g~~-------------------~~~v~~~~~~~~~~------ 126 (350)
T 3fkd_A 77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDA-CRMYEHE-------------------VCFYPSNEDIGEAD------ 126 (350)
T ss_dssp HHHHHHHHHH---TT-TCEEEEEESCCHHHHHH-HHHTTCE-------------------EEEEETTSCGGGSC------
T ss_pred HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHH-HHHcCCe-------------------EEEEecCCccccCc------
Confidence 9999999995 34 78899999999885433 3333432 223333 2111110
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCc-cccccch--hhccCCCCchhhhhhhcC-C
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGGA--QEYFGVTPDLTTLGKIIG-G 318 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~-r~g~~~~--~~~~g~~pDi~t~sK~lg-~ 318 (476)
.+++++|+++..+|++|.+.+ +++|.++++.++ .+||+||+|.+| ..+.... .+..+....+.++||.++ +
T Consensus 127 ~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 202 (350)
T 3fkd_A 127 FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP 202 (350)
T ss_dssp CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG
T ss_pred cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCc
Confidence 025667777777778899888 455555555554 599999999888 5443221 111222223447999999 8
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
|+|+||+++++++++.+.... .+++.++++++++.++|+.... .+..++..++.+++.+.|+++ +.....
T Consensus 203 G~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 273 (350)
T 3fkd_A 203 GLRIGYIVANKDFMKRVAAFS-----TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL----DGVEVH 273 (350)
T ss_dssp GGCCEEEECCHHHHHHHHTTC-----CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS----TTEEEC
T ss_pred chheEeEEeCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEEC
Confidence 999999999999999887422 3567899999999999885542 223333336677777777653 223334
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
++.|.++++.+... ...++.+.|++ +||.+.++. ...+|+++. +++++++++++|+++
T Consensus 274 ~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 274 PSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETF 338 (350)
T ss_dssp CCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 56777877777431 13578889998 999998864 345788866 888999999999988
Q ss_pred HH
Q 011856 471 KM 472 (476)
Q Consensus 471 ~~ 472 (476)
++
T Consensus 339 ~~ 340 (350)
T 3fkd_A 339 LE 340 (350)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=244.76 Aligned_cols=328 Identities=20% Similarity=0.166 Sum_probs=229.2
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCC-----C-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS-----F-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~-----~-~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
||++|+||.++ +++|+ .+|++.+++.+++++ +.. . ....+...++++.++++++..+.++ +++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~-~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALV-FSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEE-ESCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEE-ECCcHHHH
Confidence 78999999987 66676 478999999999987 221 1 1245678899999999986444454 47788899
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (476)
..++++.....+++.|++..+.|++ ....+...|. +++.+|++|+++|++++++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~-~~~~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHAS-MIEGIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHH-HHHHHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHH-HHHHHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 9888853222244556655544443 3333333222 356667779999999997543 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCC--CCch--hhhhhhcCCCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDL--TTLGKIIGGGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pDi--~t~sK~lg~G~ 320 (476)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ +.|..+. ..+++ .+|+ .++||+++.
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~-- 252 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV-- 252 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS--
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC--
Confidence 89999999999999998 9999999999999999999997 43 3443333 44454 2344 389999983
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+.||+++++++++.+......+...+ +.++++++++.++++.+++ ++..++++++.+++.+.|+++ ...+.
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHTSB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred CCCEEecCHHHHHHHHHhCcCceecC-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 23899999998887753112222222 3467889999999998865 467888899999999999876 22222
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCC-------cceEEeCC--CcHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAA 467 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-------~~~~~~~~--~t~e~i~~~~~~l 467 (476)
...+.++++.+.. .....++.+.|+ ++||++.++.. ..+|+++. +|++|+++++++|
T Consensus 327 ~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 327 DHGSHIVPVVIGD-------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp CCSSSCEEEECCC-------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCC-------------hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 2345577777631 123457888886 78999987531 25777654 7999999999999
Q ss_pred HHHHHHh
Q 011856 468 EKVKMRF 474 (476)
Q Consensus 468 ~~~~~~~ 474 (476)
+++++++
T Consensus 394 ~~~~~~~ 400 (401)
T 2bwn_A 394 DLLWARC 400 (401)
T ss_dssp HHHC---
T ss_pred HHHHHhc
Confidence 9987653
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=258.51 Aligned_cols=339 Identities=12% Similarity=0.073 Sum_probs=222.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC-CCHHHHHHHHHHHhhC----C-CCCeEEEeCCHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-PCLLENVLAEMVISAV----P-SIEMVRFVNSGT 165 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~e~v~~~~sGs 165 (476)
.+|+++|||..+. ..++ .+|.|.+++.+++++. ..++| +.....+|.+.+++++ + ..++++|++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999999883 2233 6899999999999841 11222 2222344444444443 3 568999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+++..+.. ...+++.|++.+++|+++...+......++.. .....+++.+|+++.+.+...+.+. +
T Consensus 143 ~al~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARIQM---MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN----------GTGFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHHHH---HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC----------SSSBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHHHH---HhCCCCEEEEcCCCChhHHHHHHHcCCccccc----------ccccceeEEEecccccCCcCChhHc-C
Confidence 99998833 23567889999999998765554443321110 0001123444443221111112221 2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhcc----CCCCchhhhhhhcC-C
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 318 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~----g~~pDi~t~sK~lg-~ 318 (476)
++++|+++..+|++|.+.+ .+.+++|+++|++||++||+||+|++| +.+. ......+ +....+.++||++| +
T Consensus 209 ~~~~v~l~~p~NPtG~~~~-~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAAT-RAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 5667777666777887765 555999999999999999999999988 5542 2222222 22334558999999 8
Q ss_pred CCcEEEEEecHHHHHh--------hcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAYGGRRDIMEM--------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~--------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~ 387 (476)
|+|+||+++++++++. +. ......+++.++++++++.++|+.. +. ++..++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999887652 22 1223445578999999999888642 11 456677777778888777764
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i 460 (476)
++....+..|.++++.+. . . ...++.+.|+++ ||++.|+. ...+|+++..+++++
T Consensus 365 ----g~~~~~~~~~~~~~~~~~-~-~------------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFP-G-K------------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECT-T-S------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECC-C-C------------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 333333335777777764 1 0 125677778775 99998763 346789988899999
Q ss_pred HHHHHHHHHHHHH
Q 011856 461 QHTITAAEKVKMR 473 (476)
Q Consensus 461 ~~~~~~l~~~~~~ 473 (476)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=254.40 Aligned_cols=336 Identities=16% Similarity=0.086 Sum_probs=219.5
Q ss_pred CCEEEecccChhhccCC--CCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCCCCCeEEE--eCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVPSIEMVRF--VNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~~~e~v~~--~~sGseA~ 168 (476)
|+.++||..|...++.+ +.+|.+.+++.+++++...++| ..++++++++++.......++|+| ++||++|+
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~ 104 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHH
Confidence 55678999886444455 4689999999998875322223 234455555555322114679999 99999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC--CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+.++++++.+.++++|++.+++||++...+.. .|..+...+.. ...+ .|+++|++.++++++.
T Consensus 105 ~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~--------------~d~~~l~~~l~~~~~~ 169 (394)
T 2ay1_A 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETRG--------------VDFEGMKADLAAAKKG 169 (394)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTTE--------------ECHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCceEEEecccccCCc--------------cCHHHHHHHHHhCCCC
Confidence 99999766555778899999999996554433 34332221110 0000 1799999999865334
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhcc-CCCCch---hhhhhhcC-C
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPDL---TTLGKIIG-G 318 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pDi---~t~sK~lg-~ 318 (476)
++++++++.+|++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+ ...+|+ .++||.++ +
T Consensus 170 ~~~~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 170 DMVLLHGCCHNPTGANLT-LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp CEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 677777777777887654 566999999999999999999999988 543 12122212 122343 37999999 7
Q ss_pred CCcEEEEEe---cHHHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAYGG---RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 319 G~~iG~~~~---~~~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
|+|+||+++ ++++++.+.......+..++ +.|+++++++.++|+.. .+ ++..++++++.+++.+.|++
T Consensus 249 G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (394)
T 2ay1_A 249 RERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD 328 (394)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987 67655443210000111233 34889999988888743 11 45667777777888888877
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHHHHHHH
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTIT 465 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~ 465 (476)
+....++....+..|.++++.+. . ..+.+.+.++||++.++ +|+++. +++++++++++
T Consensus 329 ~~~~~~~~~~~~~~g~~~~~~~~-------------~----~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~ 387 (394)
T 2ay1_A 329 LSGSDRFGFVAEHRGMFSRLGAT-------------P----EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILAR 387 (394)
T ss_dssp HHTSSTTTHHHHCCSSEEECCCC-------------H----HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHH
T ss_pred cCCCCCeeEEcCCceEEEeeCCC-------------H----HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHH
Confidence 64211121112234666554431 0 34566677899999874 577654 59999999999
Q ss_pred HHHHH
Q 011856 466 AAEKV 470 (476)
Q Consensus 466 ~l~~~ 470 (476)
+|+++
T Consensus 388 ~l~~~ 392 (394)
T 2ay1_A 388 AIIEV 392 (394)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99875
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=262.00 Aligned_cols=344 Identities=13% Similarity=0.072 Sum_probs=225.6
Q ss_pred CEEEecccChhhccCCCCcHHH--HHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhC-C-CCCe---EEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK-G-TSFGA---PCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~l~~-~-~~~~~---~~~~~~~la~~l~~~~-~-~~e~---v~~~~sGse 166 (476)
+.++||..|... .+|+ +|.+ .+++.+++.+ . ..|.. ..++++++++++.+.. + ++++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999988532 5775 6666 7777776654 2 22221 2345555666554432 3 4678 999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ..+++.|++.+++||++...+....|..+...+...... ..|+++|++.+++++.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-------------HYTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS-------------CBCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC-------------CcCHHHHHHHHHhcCCC
Confidence 999999953 234578999999999865433220333322221110000 12789999999864445
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCc-cccccc-h-h-hccCCCCc------hhh
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYGG-A-Q-EYFGVTPD------LTT 311 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~-r~g~~~-~-~-~~~g~~pD------i~t 311 (476)
++++++..++|++|.+. +.+++++|.++|++ ||+++|+||+|++| +.+..+ . . ...+..++ +.+
T Consensus 190 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 66655544477778765 56669999999999 99999999999988 554311 1 1 22233344 347
Q ss_pred hhhhcC-CCCcEEEEEe---cHHHHHhhcCCCC-ccccCCCCCcHHHHHHHHHHHH-H---hcC-CCHHHHHHHHHHHHH
Q 011856 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGP-MYQAGTLSGNPLAMTAGIHTLK-R---LKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 312 ~sK~lg-~G~~iG~~~~---~~~i~~~l~~~~~-~~~~~t~~~~~~~~aaa~aal~-~---~~~-~~~~~~~~~~~~~l~ 381 (476)
+||.++ +|+|+||+++ ++++++.+..... ..+..+++.|+++++++.++|+ . .+. +...++++++.+++.
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTK 348 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999999 9999888763110 0112567889999999999987 3 221 224555556666666
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCCCcceEEeCC-CcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~~~~~-~t~e~ 459 (476)
+.|++.....++....+..|.++++.+. . . + ..++.+.|++ +||++.++....+|+++. .++++
T Consensus 349 ~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~-~---------~---~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~ 414 (430)
T 2x5f_A 349 EVVYADQYHSHWQAYDFNSGYFMAIKVH-D-V---------D---PEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDD 414 (430)
T ss_dssp HHHTCGGGTTTEEECCCCBSSEEEEEES-S-S---------C---HHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGG
T ss_pred HHHHhhCCCCCceeeCCCceEEEEeCCC-C-C---------C---HHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHH
Confidence 6655321122322212233556787774 1 0 1 2567888887 999999975567899877 79999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 415 i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 415 IPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=252.18 Aligned_cols=340 Identities=14% Similarity=0.055 Sum_probs=230.9
Q ss_pred cCCCEEEecccChhhc-cCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011856 96 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA 167 (476)
.+|++++||..+.... .++ .++++.+++.+++.++. .|+. ..+++.++++++.+.++ +.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688899999885421 445 57999999999987643 2322 24677778887766532 46899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCCCC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (476)
++.+++.+ ..+++.|++.+++|+++...+ ...|..+...+.....+ + -|+++|++.+++ +
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~ 174 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEED-------------WQPDIDDIRKKITD---R 174 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGGT-------------SEECHHHHHHHCCT---T
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCcC-------------CcCCHHHHHHhhCc---C
Confidence 99999964 345678999999998855433 33343222111100000 1 179999999864 5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC-chh--hhhhhcC-CCCc
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DLT--TLGKIIG-GGLP 321 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-Di~--t~sK~lg-~G~~ 321 (476)
+++|+++++++++|.+.+ ++++++|.++|++||++||+||+|+++ +.+.......++... +++ ++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGALYD-KKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 778888777778888764 556999999999999999999999988 533233333333111 343 6899998 7999
Q ss_pred EEEEE--ecH----HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 322 VGAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 322 iG~~~--~~~----~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
+||++ +++ ++++.+.. ..... ++.|+++++++.++|+...+ +++.++++++.+++.+.|+++ +.
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~---~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 325 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDR---LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----PG 325 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHH---HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----TT
T ss_pred EEEEEEecCchhHHHHHHHHHH---HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 99998 998 99888763 22222 67788999999988863221 344555666666666666542 21
Q ss_pred ceEeeee-ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHH
Q 011856 394 AICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 394 ~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~ 465 (476)
...+.+. |.++++.+.... .....++.+.|+ ++||++.++. ...+|+++.+++++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~ 394 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 394 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHH
Confidence 1112333 445555653200 001256778887 8899998763 34688988899999999999
Q ss_pred HHHHHHHHhh
Q 011856 466 AAEKVKMRFL 475 (476)
Q Consensus 466 ~l~~~~~~~~ 475 (476)
+|++++++++
T Consensus 395 ~l~~~l~~~~ 404 (406)
T 1xi9_A 395 RFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=251.75 Aligned_cols=336 Identities=13% Similarity=0.083 Sum_probs=222.0
Q ss_pred CEEEecccChhhccCCCCc--HHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e--~v~~~~sGse 166 (476)
..+|||..|+..++.|+.+ |.|.+++.+++++.....| ..++++++++++..... .++ ++++++||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3568888886556667655 8999999999987322222 24667777777765543 466 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..++++.....+++.|++.+++|+++...+ ...|..+...+. +...++ |+++|++.+++++
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~ 193 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALF-DMAGFEVVAYPYYDAKTNGV--------------NFDGMLAALNGYE 193 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHTTCCEEEEECEETTTTEE--------------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH-HHcCCeEEEeeeeccccCcc--------------CHHHHHHHHHhCC
Confidence 99999876545567788999999998854433 333433222111 000000 7999999998665
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchh-hccCCCCch---hhhhhhcC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ-EYFGVTPDL---TTLGKIIG 317 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~-~~~g~~pDi---~t~sK~lg 317 (476)
++++++++++.+|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+ ..... ...+..+++ .++||.++
T Consensus 194 ~~~~~v~i~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 272 (420)
T 4f4e_A 194 PGTIVVLHACCHNPTGVDLN-DAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS 272 (420)
T ss_dssp TTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence 57788888888888888765 444999999999999999999999988 432 11111 111222332 37999999
Q ss_pred -CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L 384 (476)
.|+|+||+++ ++++++.+... .......+.+.+++++.++.+.|+.. ++ ++++++++++++++.+.|
T Consensus 273 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 352 (420)
T 4f4e_A 273 LYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERL 352 (420)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999853 56655443210 01111234455777777777666531 11 455667777777777777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCC-cHHHHHHH
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~ 463 (476)
+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++++++++
T Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~l~~~gI~v~~~~----Ris~~~~~~~~i~~~ 411 (420)
T 4f4e_A 353 KAAGIERDFSFINAQRGMFSYSGLT-----------------SAQVDRLREEFGIYAVSTG----RICVAALNTRNLDVV 411 (420)
T ss_dssp HHTTCSSCCTHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHHH
T ss_pred HhcCCCCCceeECCCccEEEEeCCC-----------------HHHHHHHHHhCCEEecCCC----eEEEecCCHHHHHHH
Confidence 7653222332222344555554331 1345566778899999863 776554 88889999
Q ss_pred HHHHHHHH
Q 011856 464 ITAAEKVK 471 (476)
Q Consensus 464 ~~~l~~~~ 471 (476)
+++|++++
T Consensus 412 ~~~l~~~l 419 (420)
T 4f4e_A 412 ANAIAAVL 419 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=243.98 Aligned_cols=322 Identities=14% Similarity=0.107 Sum_probs=222.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
++.+|||.++. ++++ .+|++++++.++++....| +.....++.+.++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l- 102 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY--PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK- 102 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC--CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-
Confidence 36789999875 4566 7899999999988754333 33222577777777775 5789999999999999999853
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
..++++|++.+++|+++... +...|..+...+.. ... . .|+++|++.++ +++++|+++.++
T Consensus 103 -~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~-~~~---------~----~d~~~l~~~l~---~~~~~v~~~~p~ 163 (365)
T 3get_A 103 -LNSKNAFLQAGVTFAMYEIY-AKQCGAKCYKTQSI-THN---------L----DEFKKLYETHK---DEIKLIFLCLPN 163 (365)
T ss_dssp -CCTTCEEEECSSCCTHHHHH-HHHHTCEEEECSSS-SCC---------H----HHHHHHHHHTT---TTEEEEEEESSC
T ss_pred -hCCCCEEEEeCCChHHHHHH-HHHcCCEEEEEecC-CCC---------C----CCHHHHHHHhC---CCCCEEEEcCCC
Confidence 34567888888888875443 33344433322210 000 0 17888988886 367888887667
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccc--cchhhc---cCCCCchhhhhhhcC-CCCcEEEEEe
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~--~~~~~~---~g~~pDi~t~sK~lg-~G~~iG~~~~ 327 (476)
+++|.+.+.++ +++|.++| ++|+++|+||+|+++ . .+. ...... .+....+.++||.++ +|+|+||+++
T Consensus 164 nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 241 (365)
T 3get_A 164 NPLGECLDASE-ATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA 241 (365)
T ss_dssp TTTCCCCCHHH-HHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred CCCCCCcCHHH-HHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc
Confidence 77888887443 66666666 679999999999876 3 332 111122 222233448999998 8999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++++.+.. ...+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ ++ ...++.|.++++
T Consensus 242 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~-~~~~~~~~~~~~ 311 (365)
T 3get_A 242 NANIISAFYK-----LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NI-KIIDSYTNFITY 311 (365)
T ss_dssp CHHHHHHHHH-----HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TC-EECCCSSSEEEE
T ss_pred CHHHHHHHHH-----hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CC-EECCCCCeEEEE
Confidence 9999988863 123467899999999988863211 344555555666666666554 32 234567788777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+... ...++.+.|.++||++.++. ...+|+++. +++++++++++|++++
T Consensus 312 ~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 312 FFDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ECSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ECCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 76421 13578889999999999875 456888876 8999999999999876
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=245.55 Aligned_cols=338 Identities=13% Similarity=0.046 Sum_probs=223.9
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHH------------HhcCCCC---CCCHHHHHHHHHHHhhCC-----CCCeEE
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSFG---APCLLENVLAEMVISAVP-----SIEMVR 159 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l------------~~~~~~~---~~~~~~~~la~~l~~~~~-----~~e~v~ 159 (476)
.++||.++. ++++ +|.+.+++.++. .....|. +..++++++++++.+.++ +.++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 467887664 5665 578888887532 1111222 234677777777765432 368999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
+++|++++++.+++.. ...++.|++.+++||++........|..+...+.....++ ..|+++|++.
T Consensus 113 ~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~ 178 (428)
T 1iay_A 113 MAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF------------KITSKAVKEA 178 (428)
T ss_dssp EEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT------------CCCHHHHHHH
T ss_pred EccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCC------------cCCHHHHHHH
Confidence 9999999999999953 2345789999999988544332233443322221100110 0179999998
Q ss_pred Hhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhcc-------CCCC
Q 011856 240 FEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVTP 307 (476)
Q Consensus 240 l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-------g~~p 307 (476)
+++ .+.++++|+++..++++|.+. +++++++|.++|++||++||+||+|+++ +.+..+ ....+ ++.+
T Consensus 179 l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 179 YENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 864 223577777665666778776 5677999999999999999999999987 443221 11111 2236
Q ss_pred c----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---C--CCHHHHHHHH
Q 011856 308 D----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKI 376 (476)
Q Consensus 308 D----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~ 376 (476)
| +.++||.+| +|+|+||+++ ++++++.+.. ...+++.|+++++++.++|+... + ++..++++++
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 7 448999998 8999999988 6888887762 12346778999998888876321 1 3455666677
Q ss_pred HHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------Ccc
Q 011856 377 TGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 448 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~ 448 (476)
.+++.+.|+++ ++.. +++ .|.++++.+..... .+......++.+.|+++ ||++.++. ...
T Consensus 333 ~~~l~~~L~~~----g~~~-~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 333 HKHFTNGLEVV----GIKC-LKNNAGLFCWMDLRPLLR-------ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHT----TCCB-CCCSSSSEEEEECGGGCS-------SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHhc----CCcc-cCCCeeEEEEEechhhcC-------CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 77777777664 2221 233 57788888743110 01112345788889876 99998864 235
Q ss_pred eEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. ++++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788776 8999999999999998864
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=242.44 Aligned_cols=334 Identities=16% Similarity=0.178 Sum_probs=223.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
|+.++||..+. ..++ .++.+.+++.+.++.+. .|. +..+++.++++++.+.++ .+++|++++||++|+..
T Consensus 30 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 34567777763 2233 47899999999887632 222 134677788888876553 46799999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ..+++.|++.+++|+++.. .+...|..+...+.....+. ..|+++|++.+++ ++++|
T Consensus 107 ~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v 168 (385)
T 1b5p_A 107 LFQAI--LDPGDEVIVLSPYWVSYPE-MVRFAGGVVVEVETLPEEGF------------VPDPERVRRAITP---RTKAL 168 (385)
T ss_dssp HHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCCT---TEEEE
T ss_pred HHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEeecCcccCC------------CCCHHHHHHhcCC---CCEEE
Confidence 99853 3456789999999987543 33334443322211100010 0178999888863 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch--hhhhhhcC-CCCcEEEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi--~t~sK~lg-~G~~iG~~~ 326 (476)
++...+|++|.+.+ .+.+++|.++|++||++||+||+|..+ ..+.......+.-..++ .+|||.++ +|+|+||++
T Consensus 169 ~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~ 247 (385)
T 1b5p_A 169 VVNSPNNPTGAVYP-KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247 (385)
T ss_dssp EEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred EEeCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence 66555666777765 455999999999999999999999887 43321111112111122 37999999 799999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
+++++++.+.+ .....+++.+++++.++.++|+. ..+ ++..++++++.+++.+.|+++ ++....+..|
T Consensus 248 ~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~ 320 (385)
T 1b5p_A 248 GPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGA 320 (385)
T ss_dssp CCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSBT
T ss_pred eCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCee
Confidence 99999888762 22344667889999988888863 221 445666777777777777765 2222223344
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.++++.+.... ....++.+.|+++||.+.++. ...+|+++.++++++++++++|+++++
T Consensus 321 ~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 321 FYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp TEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred EEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 55565553100 012567888889999998863 246899988999999999999987764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=246.72 Aligned_cols=334 Identities=13% Similarity=0.037 Sum_probs=219.1
Q ss_pred EEEecccChhhccCCCCc--HHHHHHHHH-HHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011856 100 EYIDYVGSWGPAIIGHAD--DQVLAALGE-TMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e--~v~~~~sGse 166 (476)
.++||..|+..++.++.+ |.|.+++.+ ++++....+| ..++++++++++..... .++ ++++++||++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 478888886545566654 999999999 8876322222 24667777777765544 467 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|++.++++.....+++.|++.+++|+++...+ ...|..+...+. +...++ |+++|++.+++++
T Consensus 107 a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~~ 171 (397)
T 3fsl_A 107 ALKVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEVSTYPWYDEATNGV--------------RFNDLLATLKTLQ 171 (397)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH-HHTTCCEEEECCEETTTTEE--------------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHH-HHcCCceEEEeeeeccCCcC--------------cHHHHHHHHHhCC
Confidence 99999876545567788999999998854333 333433222111 000000 8999999998765
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhcc-CCCCc---hhhhhhhcC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTTLGKIIG 317 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pD---i~t~sK~lg 317 (476)
+++++++++..+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+ .......+ +..++ +.++||.++
T Consensus 172 ~~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 250 (397)
T 3fsl_A 172 AGSIVLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS 250 (397)
T ss_dssp TTCEEEECSSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc
Confidence 56788888777788888766554 999999999999999999999988 432 11111111 22222 337999999
Q ss_pred -CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L 384 (476)
+|+|+||+++ ++++++.+... .......+.+.+.+++.++.++++.. .+ ++..++++++.+++.+.|
T Consensus 251 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (397)
T 3fsl_A 251 LYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVL 330 (397)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999964 55665543210 01111234445677777776666421 11 456677777888888888
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCC-cHHHHHHH
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~ 463 (476)
+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~g~----Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 331 STEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHCTTSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTTC----EEEGGGCCTTTHHHH
T ss_pred HhcCCCCCceeecCCceEEEecCCC-----------------HHHHHHHHHhCCEEECCCC----eEEEEecCHhhHHHH
Confidence 7764221222222334555554431 1345567778899999875 776554 88899999
Q ss_pred HHHHHHH
Q 011856 464 ITAAEKV 470 (476)
Q Consensus 464 ~~~l~~~ 470 (476)
+++|+++
T Consensus 390 ~~~l~~~ 396 (397)
T 3fsl_A 390 AKAFAAV 396 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=248.82 Aligned_cols=339 Identities=11% Similarity=0.073 Sum_probs=218.2
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGs 165 (476)
.+|+++|||..+ ++....+|.|.+|+.+++++.. .++|. .++++++++++.+.++ ..++|+|++|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 357889999998 6665579999999999988521 12222 3455556665543334 578999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+++..+.. ...+++.|++.+++|++....+......+..... .. ...++..++.++.+.+...+++. +
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-VQ-------KYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-TT-------EETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-cc-------ccCceEEeccCcccCCcCChhhC-C
Confidence 99987533 2346788999999999876555444332211000 00 00012333332111111112222 2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc----CCCCchhhhhhhcC-CC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~----g~~pDi~t~sK~lg-~G 319 (476)
++++|+++.++|++|.+.+.+ .+++|.++|++||++||+||+|++| ..+.......+ +....+.++||++| +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~~~-~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAATRE-QLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCCHH-HHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 456666666677788876544 4999999999999999999999988 44332222122 12223448999999 89
Q ss_pred CcEEEEEecHHH--------HHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-h-cC-CCHHHHHHHHHHHHHHHHHHHh
Q 011856 320 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-L-KE-PGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 320 ~~iG~~~~~~~i--------~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~-~~-~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+|+||+++++++ ++.+.. .....+++.++++++++.++++. . +. ++..++++++.+++++.|+++
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNR---IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHH---HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHHH---HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999999887 555542 22334556789999998888742 1 11 456677777777777777764
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~ 461 (476)
++.......|.++++.+... + ..++...|++ +||++.++. ...+|+++..++++++
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ-----------S---SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS-----------C---HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC-----------C---HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 33222233577777776411 1 2456677765 499998753 3468999999999999
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
+++++|++--
T Consensus 416 ~~l~rl~~~~ 425 (432)
T 3ei9_A 416 EACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-29 Score=243.74 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=212.3
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
.+++|||.+|. +++|+. |.+ + +... ..|+.....++.+.++++++ ++++|++++|++++++.+++..
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a----~~~~--~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~- 95 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--T----QQTL--NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF- 95 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--C----CCCT--TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-
T ss_pred CCceEEeeCCC--CCCCCC-HhH--h----hhhh--ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH-
Confidence 35689999886 788874 555 2 2222 23333335677777777775 5689999999999999999953
Q ss_pred hccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 177 AFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 177 ~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..++ ++|++.+++||++...+ ...|..+...+.. .+. ..|++++++.++ ++++|+++++
T Consensus 96 -~~~g~d~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~----~~~~v~l~~p 155 (356)
T 1fg7_A 96 -CEPGKDAILYCPPTYGMYSVSA-ETIGVECRTVPTL--DNW------------QLDLQGISDKLD----GVKVVYVCSP 155 (356)
T ss_dssp -CCTTTCEEEECSSSCTHHHHHH-HHHTCEEEECCCC--TTS------------CCCHHHHHTSCT----TEEEEEEESS
T ss_pred -hCCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeeCC--CCC------------CCCHHHHHHHhc----CCCEEEEeCC
Confidence 2234 78999999999865444 3344433322211 110 017888887775 4677777666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-hccCCCCchhhhhhhcC-CCCcEEEEEecHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
+|++|.+.+ .+++++|.++|+ ||++||+||+|++| +....... +.++....+.++||.+| +|+|+||++++++++
T Consensus 156 ~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 233 (356)
T 1fg7_A 156 NNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI 233 (356)
T ss_dssp CTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH
Confidence 777887765 556999999999 99999999999987 32222211 22222233458999999 899999999999998
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFF 408 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~ 408 (476)
+.+.. ...+++.|+++++++.++|+... -++..++++++++++.+.|+++ +. ....++.|.++++.+
T Consensus 234 ~~l~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 234 NLLMK-----VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARF 304 (356)
T ss_dssp HHHHH-----HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEE
T ss_pred HHHHH-----hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEEC
Confidence 88763 12355789999999988886422 1334455556666666666553 32 223456677887776
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc-CC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.+ ..++.+.|.++||++.+ +. .+.+|+++. +++|+++++++|+++
T Consensus 305 ~~----------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 305 KA----------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp TT----------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred CC----------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 30 25678888999999998 43 235788876 689999999998753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=243.82 Aligned_cols=344 Identities=11% Similarity=-0.011 Sum_probs=219.9
Q ss_pred CEEEecccChhhcc-CCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhh------C---CCCCeEEEeCC
Q 011856 99 NEYIDYVGSWGPAI-IGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISA------V---PSIEMVRFVNS 163 (476)
Q Consensus 99 ~~~iD~~~~~~~~~-lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~------~---~~~e~v~~~~s 163 (476)
+.+|||..+..... ....++.+.+++.+++++....+| ..+++.++++++.+. . ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 45788888743221 234789999999999876432222 246667777777621 1 14689999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhc
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFEN 242 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~ 242 (476)
|++|++.+++.. ..+++.|++.+++||++... +...|..+...+..... .+ .|+++|++.+++
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~-~~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYETV-CKAYGIGMHFYNCRPEN-------------DWEADLDEIRRLKDD 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGG-------------TTEECHHHHHHHCCT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHH-HHHcCcEEEEeecCccc-------------CCCCCHHHHHHHhcc
Confidence 999999999953 33567899999999986543 33334332211110000 01 179999998864
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-----cchhhccCCCCc---hhhhh
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVTPD---LTTLG 313 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-----~~~~~~~g~~pD---i~t~s 313 (476)
++++|++...++++|.+. +++++++|.++|++||++||+||+|++| +.+. ......++..++ +.++|
T Consensus 177 ---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 177 ---KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 455554444466778765 4667999999999999999999999988 5543 222222222222 23799
Q ss_pred hhcC-CCCcEEEEEecHH--HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 314 KIIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 314 K~lg-~G~~iG~~~~~~~--i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
|.++ +|+|+||++++++ +++.+..........+++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 331 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE- 331 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9987 6899999988663 433332100011123567899999999999874321 33445555555556555543
Q ss_pred hhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHH
Q 011856 388 GKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 388 ~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~ 461 (476)
++....+ +..|.++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+++++++
T Consensus 332 ---~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~ 400 (416)
T 1bw0_A 332 ---CIGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYR 400 (416)
T ss_dssp ---STTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHH
T ss_pred ---CCCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHH
Confidence 3222222 3346777777742100 00011246777775 8899998864 3468898889999999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|++++++.
T Consensus 401 ~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 401 EAVERIKAFCQRH 413 (416)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=241.49 Aligned_cols=338 Identities=11% Similarity=0.014 Sum_probs=220.6
Q ss_pred CCEEEecccChhhccCCC--CcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCCCCC---eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~~~e---~v~~~~sGseA~ 168 (476)
|..+|||..|...+.-+. .++.+.+++.+..... ..|+ +..+++.++++++.... +.+ ++++++||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 334566666621111111 5778888876644322 1222 23566777777776655 355 999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~ 246 (476)
..+++.. ..+++.|++.+++|+++... +...|..+...+.....+ ..|+++|++.+++. ++.
T Consensus 116 ~~~~~~l--~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 116 HHLIHNY--TEPGDEVLTADWYWGAYRVI-CSDTGRTLVTYSLFDEHN-------------NFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHH--SCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECSBCTTS-------------SBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHh--cCCCCEEEECCCCchhHHHH-HHHcCCEEEEEeeeCCCC-------------CcCHHHHHHHHHHhhccCC
Confidence 9999842 34567888888888875543 344444333322211110 11799999998742 124
Q ss_pred eEEEEEccc-CCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-cccc---cchhhccCCCCc---hh--
Q 011856 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---LT-- 310 (476)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~---~~~~~~~g~~pD---i~-- 310 (476)
.++++++.. +|++|.+.+.++ +++|.++|+ +||++||+||+|.+| +.+. .+.....++.+| ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKD-WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 446666644 778888876555 999999999 899999999999988 6543 222233345556 22
Q ss_pred hhhhhcC-CCCcEEEEEe---cHHHHHhhcCCCCccc-cCCCCCcHHHHHHHHHHHHHh------c-C-CCHHHHHHHHH
Q 011856 311 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRL------K-E-PGTYEYLNKIT 377 (476)
Q Consensus 311 t~sK~lg-~G~~iG~~~~---~~~i~~~l~~~~~~~~-~~t~~~~~~~~aaa~aal~~~------~-~-~~~~~~~~~~~ 377 (476)
+|||.++ +|+|+||+++ ++++++.+........ ....+.+.+++.++.++|+.. . . .++.++++++.
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 7999999998 8999888763111111 122357888888887777422 1 1 24456667777
Q ss_pred HHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-Cc
Q 011856 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t 456 (476)
+++.+.|+++ ++....+..|.++++.+. + ..++.+.|.++||++.|+. ..+|+++. ++
T Consensus 339 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~-~~iRis~~~~~ 397 (418)
T 3rq1_A 339 DIFKQEAAQV----GLPMLPYRGGFFITIPTD-------------S---ANAICEELKKEHIYVIALA-NGIRIAACGIP 397 (418)
T ss_dssp HHHHHHHHHH----TCCCCCCCSSSEEEEECT-------------T---HHHHHHHHHHTTEECEECS-SEEEEEGGGSC
T ss_pred HHHHHHHHhc----CCCCCCCCceEEEEcCCC-------------C---HHHHHHHHHhCCEEEecCC-CCeEEEEecCC
Confidence 7777777765 222222233444444431 1 2567788899999999874 56899876 69
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 398 ~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=240.99 Aligned_cols=329 Identities=13% Similarity=0.103 Sum_probs=216.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCC-CCHHHHHHHHHHHhh--CC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA-PCLLENVLAEMVISA--VP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~-~~~~~~~la~~l~~~--~~--~~e~v~~~~sGseA~ 168 (476)
|+++|||..+. ..++ .+|.+.+++.+++++.. ..+| +.....+|.+.++++ .+ ..++|++++|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 66788988874 2233 68999999999887621 1233 333446777777776 33 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
..++++ +.+++.|++.+++|+++... +...|.. +...+.....++. .|+ ++. +++
T Consensus 109 ~~~~~~---~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~------------~~l---~~~-----~~~ 164 (400)
T 3asa_A 109 FRLLSF---FGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFF------------PEF---PED-----THI 164 (400)
T ss_dssp HHHHHH---HCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTC------------CCC---CTT-----CCC
T ss_pred HHHHHH---cCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCcc------------cCh---hhc-----cCc
Confidence 987653 45678899999999986543 3334443 3222111100110 021 111 256
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCc----hhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD----LTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pD----i~t~sK~lg-~G~ 320 (476)
++|++++.++++|.+.+ .+++++|.++|++||++||+||+|++| +.+. ......++..+| +.++||.+| +|+
T Consensus 165 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl 243 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLN-KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI 243 (400)
T ss_dssp SEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC
T ss_pred cEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch
Confidence 67777666777888765 566999999999999999999999988 5443 112222221133 458999998 899
Q ss_pred cEEEEEecHHH-------HHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 321 PVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 321 ~iG~~~~~~~i-------~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
|+||+++++++ ++.+.. .....++ +.|+++++++.++|+....++..++++++.+++.+.|++. +
T Consensus 244 riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 244 RLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp CCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred heeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 99999999887 554431 1122233 5789999999999886533677888888888888888774 3
Q ss_pred CceEeeeeceeEEEE-EecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHH
Q 011856 393 HAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTI 464 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~ 464 (476)
+.......|.++++. +... . + ..++.+.|++ +||++.++. ...+|+++..+++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~---------~---~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l 383 (400)
T 3asa_A 317 FEVFGGEHAPYLWVKPTQAN-I---------S---DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAAC 383 (400)
T ss_dssp CEEEECSSSSEEEEECCCTT-C---------C---TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHH
T ss_pred CeeeCCCCceEEEEeccCCC-C---------C---HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHH
Confidence 322222346778887 5321 0 0 1246666765 599998763 3458898888999999999
Q ss_pred HHHHHHHHHh
Q 011856 465 TAAEKVKMRF 474 (476)
Q Consensus 465 ~~l~~~~~~~ 474 (476)
++|++++++.
T Consensus 384 ~~l~~~~~~~ 393 (400)
T 3asa_A 384 ERLQMAPALQ 393 (400)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=243.68 Aligned_cols=340 Identities=13% Similarity=0.049 Sum_probs=217.4
Q ss_pred CCCEEEecccChhhccCCC--CcHHHHHHHHH-HHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011856 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~--~~s 163 (476)
+|+.++||..|...++.|+ .+|.+.+++.+ .++.....+| ..+++.++++++....+ .+++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 3566788888843233443 46899999998 7764322222 23556666666644332 3689999 999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
|++|++.++++.+.+.+++.|++.+++|+++...+ ...|..+...+.....+. ..|+++|++.++++
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCC------------ccCHHHHHHHHHhC
Confidence 99999999876656667788999999999965433 333433222111000000 01799999999764
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc---ccchh-hccCCCC----c--hhhh
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-EYFGVTP----D--LTTL 312 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~-~~~g~~p----D--i~t~ 312 (476)
+...+++++...++++|.+.+ .+.+++|.++|++||++||+||+|.+| ..+ ..... ...+..+ + +.++
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPT-SEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 333455564666666777665 455999999999999999999999988 443 22122 2111223 2 3379
Q ss_pred hhhcCC-CCcEEEEE--e-----cHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-------C-CCHHHH
Q 011856 313 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-PGTYEY 372 (476)
Q Consensus 313 sK~lg~-G~~iG~~~--~-----~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-------~-~~~~~~ 372 (476)
||.++. |+|+||++ + +++ +++.+.. .....+.+.++++++++.++|+... . ++..++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999998 7 666 7776652 1223334558899999888887441 1 456667
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 452 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~ 452 (476)
++++.+++.+.|+++....++....+..|.++++.+ +. ..+...+.++||++.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------------TP---QMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------------CH---HHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------------CH---HHHHHHHHhCCEEecc----CcEEE
Confidence 777777777777765311012211122333333222 11 2444445578999987 46887
Q ss_pred CCC-cHHHHHHHHHHHHHHHHHh
Q 011856 453 LAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
+.. +++++++++++|+++++.+
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EccCCHhHHHHHHHHHHHHHHhh
Confidence 654 9999999999999988753
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=230.22 Aligned_cols=314 Identities=13% Similarity=0.110 Sum_probs=218.8
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
+.+++|||.+|. +++| .+|.+.+++.++++... .|+.....+|.+.++++++ ..+++++++|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARIN--RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTT--SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhc--cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6777 68999999998877643 3466777889999998886 567999999999999999984
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
+ +++.|++.+++|+++.. .+...|..+...+.....+ -|+++|++. .++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~-----~~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLL--------------LDPNDLAQV-----SRDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSS--------------BCHHHHTTC-----CTTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCC--------------CCHHHHHhh-----cCCCEEEEeCC
Confidence 4 67789998988887543 3333333322211111001 178887754 14567777777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
++++|.+.+ ++++.++|+++++ +|+||+|.+| ..+... ....+....+.++||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 788899999 8889999999997 5669999877 433211 111111122347999998 8999999999999999
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+... ..+++.+++++.++.++|+.... ++..+++.++.+++.+.|+++ ++. ..+..|.++++...+
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYR-VASSEANFVLVENAA-- 286 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCC-BCCCSSSEEEEECTT--
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCE-ECCCCCeEEEEEcCC--
Confidence 88742 23456788888888887763221 344555666666666666654 322 134567777766532
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
. ..+.+.|.++||.+.++. ...+|+++. +++++++++++|+++.+
T Consensus 287 -----------~---~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 -----------G---ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------T---HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred -----------H---HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 1 356678889999998864 246788876 79999999999988754
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=237.48 Aligned_cols=324 Identities=13% Similarity=0.130 Sum_probs=223.5
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC--------CC-CCCCHHHHHHHHH-HHhhCCCCCeEEEeCCHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACM 169 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--------~~-~~~~~~~~~la~~-l~~~~~~~e~v~~~~sGseA~~ 169 (476)
.|+|+.. +.++.+|++.+++.+++.... .+ .++.+...++.++ ++++++.. +++|++||++|++
T Consensus 10 i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 10 INIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKF 83 (371)
T ss_dssp EECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHH
T ss_pred EEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHH
Confidence 4566532 346679999999999887532 11 1245667889999 99988533 9999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC--CCe
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEI 247 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~ 247 (476)
.+++.+ ..+++.|++.+++||+.... +...|..+...+.+..... .-|+++|++.++++. +++
T Consensus 84 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 84 AVMHSL--AKKDAWVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHH--CCTTCEEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHH--hCCCCEEEEccCcchHHHHH-HHHcCCeEEEeecccCCCC------------CcCHHHHHHHHHhhcccCCe
Confidence 999964 44667888888899886554 4444443332220011000 017999999997421 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~ 325 (476)
++|+++++++++|.+.+ +++|.++|++||++||+||+|+.+... .....++ +|++ +++|.+++|.|+|++
T Consensus 149 ~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~~~~~~G~~ 220 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIG--ADFIVGSGHKSMAASGPIGVM 220 (371)
T ss_dssp EEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHT--CSEEEEEHHHHSSCCSSCEEE
T ss_pred EEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcC--CCEEEecCCcCCCCCCCcEEE
Confidence 88999999999999998 899999999999999999999754221 1122333 5655 689999987899999
Q ss_pred EecHHHHHh-hcCCCCccccC-----CCCCcHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHhhhcCCceEe
Q 011856 326 GGRRDIMEM-VAPAGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 326 ~~~~~i~~~-l~~~~~~~~~~-----t~~~~~~~~aaa~aal~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
++++++++. +.+.... ... +++.++..++++.++++.+.+ ++.+++ +++.+++.+.|+++ ++....
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 294 (371)
T 2e7j_A 221 GMKEEWAEIVLRRSEKY-KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLG 294 (371)
T ss_dssp EECTTTTTTTTCBCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEES
T ss_pred EEechhhhhhccccccC-cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEec
Confidence 999998877 6542211 111 456678888888888887765 667778 88888998888875 222111
Q ss_pred ee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-------C--CcceE-EeCC---CcHHHHHH
Q 011856 398 GY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQH 462 (476)
Q Consensus 398 ~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~--~~~~~-~~~~---~t~e~i~~ 462 (476)
+. .+.++++.+. ...++.+.|.++||.+.+. + ...+| +++. ++++++++
T Consensus 295 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~ 358 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDY 358 (371)
T ss_dssp SSSCCSSEEEEECH----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHH
T ss_pred CCCccCceEEEECC----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHH
Confidence 11 4667777662 1356778888889988761 1 23457 6544 79999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
++++|+++++++
T Consensus 359 ~~~~l~~~~~~~ 370 (371)
T 2e7j_A 359 VLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=233.51 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHhhCC-C---------CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 137 PCLLENVLAEMVISAVP-S---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~---------~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
..+++.++++++.+.++ . .++|++++|+++|+..+++.. ...++.|++.+++|+++... +...|..+
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 156 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGCNI 156 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTCEE
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCCEE
Confidence 34677777777776543 2 268999999999999999953 33467899999999885443 33344432
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---------CCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
...+... .+ .|+++|++.+++++ +++++|+++| .+|++|.+.+ .+.+++|.++|
T Consensus 157 ~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a 220 (425)
T 2r2n_A 157 INVASDE-SG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLT-SERKKEIYELA 220 (425)
T ss_dssp EEECEET-TE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCC-HHHHHHHHHHH
T ss_pred EEeCcCC-CC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCC-HHHHHHHHHHH
Confidence 2211100 01 27999999997422 3567887765 4556787765 55699999999
Q ss_pred HHhCCEEEEeccccCc-ccccc-chhhcc---CCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcH
Q 011856 277 KENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~ 351 (476)
++||++||+||+|+++ +.+.. .....+ +....+.+|||.+++|+|+||+++++++++.+.. .....+++.|+
T Consensus 221 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~---~~~~~~~~~~~ 297 (425)
T 2r2n_A 221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVIL---HIQVSTLHPST 297 (425)
T ss_dssp HHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHH---HHHTTTCSSCH
T ss_pred HHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHH---HHHHhcCCCCH
Confidence 9999999999999987 54431 111112 2223345899999999999999999999888762 33445678899
Q ss_pred HHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 352 LAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 352 ~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
+++.++.++|+.+.+ ++..++++++.+++.+.|++... ++. ...+..|.++++.+.... +
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~p~~g~~~~~~~~~~~----------~ 365 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLT--GLAEWHVPAAGMFLWIKVKGIN----------D 365 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEECCCSBSSEEEEEETTCS----------C
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCeEEeCCCceEEEEEEeCCCC----------C
Confidence 999999999876421 23334445555555555554311 221 122456778888884311 1
Q ss_pred hHHHHH-HHHHHHHCCeEeccCC---------CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 424 TTKFAR-FYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 424 ~~~~~~-~~~~l~~~Gv~~~~~~---------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
. .+ +.+.|.++||.+.|+. ...+|+++. .+++++++++++|++++++.
T Consensus 366 ~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 366 V---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp C---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 23 4677889999998752 245788876 79999999999999998764
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=224.76 Aligned_cols=329 Identities=15% Similarity=0.131 Sum_probs=223.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCC------CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG------APCLLENVLAEMVISAVPS--IEMVRFVNSGT 165 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~------~~~~~~~~la~~l~~~~~~--~e~v~~~~sGs 165 (476)
+|+.+++|..+. .++.+|.+.+++.+++++.. +.+ .+.+...++++.++++++. .++++|++||+
T Consensus 20 ~g~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA----SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT----CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc----cCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 455555444431 24678999999999998742 111 1245567899999999864 58999999999
Q ss_pred HHHHHHHHHHHh--ccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHH
Q 011856 166 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240 (476)
Q Consensus 166 eA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 240 (476)
+|++.+++.++. ..++++|++.+++||+..... ....|..+...+.... + ..|+++|++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-------------~~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-G-------------TLQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-S-------------CBCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-C-------------CcCHHHHHHHh
Confidence 999999997532 456788999999999865432 2233443332221110 0 12788999988
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC
Q 011856 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.... ......+ .+|++ +++|.+|.
T Consensus 162 ~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 DE---KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp CT---TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred cc---CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCccccc--CCCEEEEEchhccCC
Confidence 63 6889999999999999998 99999999999999999999964321 1111222 46765 69999962
Q ss_pred -CCcEEEEEecHHHHHhhcCCCCcc------------------ccCCCCCcHHHHHHHH-HHHHHhcC---CCHHHHHHH
Q 011856 319 -GLPVGAYGGRRDIMEMVAPAGPMY------------------QAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 375 (476)
Q Consensus 319 -G~~iG~~~~~~~i~~~l~~~~~~~------------------~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~ 375 (476)
| +|++++++++++.+.+..... ...+.+.+++.+.+++ ++++.+.+ +++.+++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 899999999998886421100 0111234556666555 77877653 356667777
Q ss_pred HHHHHHHHHHHHhhhcCCceEeee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 445 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------- 445 (476)
+.+++.+.|+++ +....... .|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH-----------H---AYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC-----------C---HHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC-----------C---HHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777777653 21112233 577877776310 1 2467788899999998753
Q ss_pred ----CcceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ----FEAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. +|++|+++++++|+++++.+
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 245777654 59999999999999998754
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=230.09 Aligned_cols=315 Identities=14% Similarity=0.060 Sum_probs=214.0
Q ss_pred CcHHHHHHHHHHHHhcCC-C-CC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-----------c
Q 011856 116 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-~-~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-----------~ 179 (476)
.+|++.+++.+++.+... + .+ ..+...++++++++.++ ..+++++++||++|++.+++.++.. +
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 578999999998876321 1 11 24566789999999987 5779999999999999999977543 2
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
+++.|++.+++|+++ ...+...|..+...+...... -|+++|++.++++ ++++|+++++++++
T Consensus 122 ~gd~vl~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSF-EKGREMMDLEYIYAPIKEDYT--------------IDEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHH-HHHHHHHTCEEEEECBCTTSS--------------BCHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHH-HHHHHHcCceeEEEeeCCCCc--------------CCHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 366777777777764 344444454333222111000 1899999999863 46677777777888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccc---------cchhhccCCCCchhhhhhhcCCCCcEEEEEe
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~---------~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~ 327 (476)
|.+.+ +++|.++|++||++||+||+|+++ . .+. .+.... ++...+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 98888 999999999999999999999865 2 221 222233 555555678999888889999977
Q ss_pred cHH-HHHhhcCCCCccc--------cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 328 RRD-IMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 328 ~~~-i~~~l~~~~~~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
+++ +.+.+....+... +++.+.+++++.++++.+....-++..++++++.+++.+.|+++ .+... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPV--IE 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBS--SC
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEE--cC
Confidence 554 5554432111111 12223356666666666543322567788888888888888876 22211 22
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEEeC--CCcHHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~~--~~t~e~i~~~~~~l~~~~~ 472 (476)
..+.++++.+.+ ..++.+.|.++||++.++.. ..+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 445666655421 25788899999999988763 5677764 4799999999999998764
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=237.10 Aligned_cols=336 Identities=15% Similarity=0.100 Sum_probs=211.9
Q ss_pred CEEEecccChhhccCCCC--cHHHHHHHHHHHHhc------CCCCCC---CHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011856 99 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSG 164 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~~------~~~~~~---~~~~~~la~~l~~~~~---~~e~v~~~~sG 164 (476)
..++||..+ .+-... .+.+.+++.+.+.+. ..|+.+ .++++++++++.+.++ .+++|++|+||
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 346777776 222211 134555555554332 123222 2555666666654432 57899999999
Q ss_pred HHHHHHHHHHHHhccCCc-----eEEEE-eCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------C
Q 011856 165 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------D 232 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~-----~ii~~-~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d 232 (476)
++|++.+++... ..++ +|++. +++||++.......... ......+..++.+ |
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d 171 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF--------------VSARPNIELLPEGQFKYHVD 171 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCE--------------EECCCEEEEEGGGEEEEECC
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhh--------------ccccCcccccCCcccccccC
Confidence 999999999642 2222 77776 88888854433211000 0000112222211 6
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccc-h--hhccCCCCch
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-A--QEYFGVTPDL 309 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~--~~~~g~~pDi 309 (476)
+++|+ +. +++++|+++..+|++|.+.+.++ +++|.++|++||++||+||+|..+..+..+ . ....+....+
T Consensus 172 ~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~-~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 172 FEHLH--IG---EETGMICVSRPTNPTGNVITDEE-LMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GGGCC--CC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEE
T ss_pred HHHhc--cc---cCceEEEECCCCCCCCCccCHHH-HHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEE
Confidence 77776 32 36778887777778888776555 999999999999999999999644211110 0 0111222235
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 384 (476)
.++||...+|+|+||+++++++++.+. ...+..+++.++++++++.+.++...- +.+.++++++.+.+.+.|
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIA---NMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHH---HHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHH---HhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589995447999999999999998886 233455677889999998888863211 124455666777777777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------------CcceEE
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEAGFT 451 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------~~~~~~ 451 (476)
.+.....++....+..|.++++.+..... ...++.+.|.++||++.++. ...+|+
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRi 390 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPI------------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRM 390 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSS------------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEE
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCC------------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEE
Confidence 76544334444445667888887743111 12567888899999998753 235788
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++..+++++++++++|+++++++
T Consensus 391 s~~~~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 391 NYVPEPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp ESCSCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-26 Score=228.06 Aligned_cols=324 Identities=13% Similarity=0.046 Sum_probs=227.9
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA--------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~--------~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
+|..|+|+.+. |+.++.|.+++.+++.+...... ..+...++.++++++++ ..++++|++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 46789999999999976321110 12556789999999986 46799999999999
Q ss_pred HHHHHHHHHhc----cCCceEEEEeCCCCCCchhHHhh----c--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 168 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLVK----A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 168 ~~~al~~ar~~----~~~~~ii~~~~~yhg~~~~~~~~----~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
++.+++.++.+ .+++++|+.++.+|+.+...+.. . |. .++.++. +++|+
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99999865433 45566788888888854433211 1 22 2344444 67888
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhh
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKI 315 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~ 315 (476)
+.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.-... .....+ .+|+++ ++|.
T Consensus 160 ~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~~--~~d~~~~s~~K~ 228 (416)
T 1qz9_A 160 QAIDQ---DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAVP--VDLHQA--GADYAIGCTYKY 228 (416)
T ss_dssp HHCST---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCHHHH--TCSEEEECSSST
T ss_pred HHhCC---CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEccccccCcC--CChhhc--CCCEEEecCccc
Confidence 88863 6889999999999999988 999999999999999999999621111 112222 367764 5699
Q ss_pred cCCCCcE-EEEEecHHHHHhhcCCCCc--------------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHH
Q 011856 316 IGGGLPV-GAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYE 371 (476)
Q Consensus 316 lg~G~~i-G~~~~~~~i~~~l~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~ 371 (476)
+++|.++ |++++++++++.+.+.... ......+.++.+++++.++|+.+.+ +++.+
T Consensus 229 l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 308 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 308 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888 9999999987766532111 0112234678888888889988764 45778
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
+++++.+++.+.|+++....++..... ..+.++++.+.+ ..++.+.|.++||++......
T Consensus 309 ~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~l~~~gi~~~~~~~~ 372 (416)
T 1qz9_A 309 KSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----------------GYAVIQALIDRGVIGDYREPR 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----------------HHHHHHHHHTTTEECEEETTT
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----------------HHHHHHHHHhCCcEeccCCCC
Confidence 888888999988887522102211111 135666666521 257888899999998765556
Q ss_pred ceEEeCC---CcHHHHHHHHHHHHHHHHHh
Q 011856 448 AGFTSLA---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 448 ~~~~~~~---~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|+++. +|++|+++++++|++++++.
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 7888754 59999999999999998753
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=238.91 Aligned_cols=339 Identities=11% Similarity=0.040 Sum_probs=219.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHH--HHHHhcC-CCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH--HHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKGT-SFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~l~~~~-~~~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~--~al 172 (476)
.+||..|.....+...++.+.+++. +.+..+. ...| +.....+|.+.++++++ .+++|++++|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 3666666322111334556777775 3333221 1223 33344677888888776 5789999999999997 777
Q ss_pred HHHHhc-cC--------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 173 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 173 ~~ar~~-~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
+..... .+ ++.|++.+++|+++...+ ...|..+...+... .+ -|+++|++.+++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL-QTLGFELLTVDMQS-DG--------------PDVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccCCC-CC--------------CCHHHHHHHHhhC
Confidence 743221 23 578999999998865443 33344322211100 01 1899999999632
Q ss_pred CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCc-ccc--ccc---hhh------ccCCCCch
Q 011856 244 KGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGG---AQE------YFGVTPDL 309 (476)
Q Consensus 244 ~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~-r~g--~~~---~~~------~~g~~pDi 309 (476)
+++++|+++|. +|++|.+.+.++ +++|.++| ++||++||+||+|..+ ..+ ... ... ..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~~~~-l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETISLEK-ARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCCHHH-HHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCCHHH-HHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 36888888764 455787776555 99999999 9999999999999843 221 111 111 12222335
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-hcC-----CCHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE-----PGTYEYLNKITGELTQG 383 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~-----~~~~~~~~~~~~~l~~~ 383 (476)
.+|||.+.+|+|+||+++++++++.+. ......+++.+++.+.++.++|+. ... .+..+.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLS---KYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHH---HHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999668999999999999998886 333455778899999999888875 111 22333344445555555
Q ss_pred HHHHhhhcC--CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEE
Q 011856 384 IIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 451 (476)
Q Consensus 384 L~~~~~~~~--~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~ 451 (476)
|.+.....+ +....+..|.++++.+... ....+.+.|.++||++.+++ ...+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 555433333 2222345678888887431 12567788899999999832 245788
Q ss_pred eCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 452 SLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
++.. +++++++++++|+++++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHH
Confidence 7664 9999999999999998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=235.27 Aligned_cols=305 Identities=17% Similarity=0.126 Sum_probs=200.5
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCC-c--------------eEEEE-eCCCCCCchhH
Q 011856 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGR-E--------------RIIKF-EGCYHGHADPF 198 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~-~--------------~ii~~-~~~yhg~~~~~ 198 (476)
.+++.++++++.+.++ ++++|+||+||++|++.+++. +.++ + .||+. +++|+++....
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~---l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNL---FGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH---SSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHH---HhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 3566677777755432 578999999999999999995 3332 2 46654 77888754321
Q ss_pred HhhcCCCCccCCCCCCCCCCCCCCCceeeccC----------CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF----------NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
... .........++.++. -|+++|++.+++..+++++|+++..+|++|.+.+.++
T Consensus 163 ~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~- 227 (444)
T 3if2_A 163 VEG--------------QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE- 227 (444)
T ss_dssp SSS--------------CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHH-
T ss_pred ccc--------------chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHH-
Confidence 100 000000111222221 2899999875321236777777656677888776554
Q ss_pred HHHHHHHHHHhCCEEEEeccccCccccccc---hhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccC
Q 011856 269 LNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~r~g~~~---~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~ 345 (476)
+++|.++|++||++||+||+|..+..+..+ .....+...++.++||...+|+|+||+++++++++.+.. ..+..
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~ 304 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSA---MNAVV 304 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHH---HHHhc
Confidence 999999999999999999999643111110 001123333456899985578999999999999988762 33444
Q ss_pred CCCCcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhc
Q 011856 346 TLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
+++.+++.++++.+.++.... +.+.++++++.+.+.+.|.+.....++....+..|.++++.+.....
T Consensus 305 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------- 377 (444)
T 3if2_A 305 NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI------- 377 (444)
T ss_dssp HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-------
T ss_pred cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-------
Confidence 667788999888888763211 12455566666777777766543333333334667888888753111
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCC--------------cceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~--------------~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
...++.+.|.++||++.++.. ..+|+++..++++|++++++|+++++++.
T Consensus 378 -----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 378 -----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp -----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 125678888999999987632 25788887799999999999999998764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=228.60 Aligned_cols=307 Identities=11% Similarity=0.061 Sum_probs=202.7
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~al~~ 174 (476)
++++||.++. +.++ .+|++.+++.+++.+....+|+.....++.+.++++++ ..+++++++||++++..+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 4678988874 3355 68999999999873311122333224556666666553 467999999999999999994
Q ss_pred HHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE-Ec
Q 011856 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi-~e 253 (476)
+ ++.|++. ++||++...+ ...|..+...+.....++ |+++| +++++|+ ++
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~~-~~~g~~~~~v~~~~~~~~--------------d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIFA-KAVGAKFLEVPLTKDLRI--------------PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHHH-HHHTCEEEECCCCTTSCC--------------CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHHH-HHcCCeEEEeccCCCCCC--------------CHHHc--------CCCCEEEEeC
Confidence 3 5788888 9998865433 344543333221100010 33333 1456666 55
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccCCCCchhhhhhhcC-CCCcEEEEEecHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
| +|++|.+.+ .+++.++++.+| ++|+||+|++| +. .... .+..+....+.++||.+| +|+|+||++++++
T Consensus 147 p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 219 (335)
T 1uu1_A 147 P-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEK 219 (335)
T ss_dssp S-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHH
T ss_pred C-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHH
Confidence 5 667888877 445555555558 99999999877 42 1111 122222233458999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.+.
T Consensus 220 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~ 289 (335)
T 1uu1_A 220 FIDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITDSRGNFVFVFME 289 (335)
T ss_dssp HHHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCCCCSSEEEEECC
T ss_pred HHHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcE-EcCCCCeEEEEECC
Confidence 98887631 13468899999999999875321 456677777778888777765 221 12455777776653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
. ....++.+.|+++||++.+. ...+|+++.. ++++++++++|+++
T Consensus 290 ~--------------~~~~~~~~~l~~~gi~v~~~-~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 290 K--------------EEKERLLEHLRTKNVAVRSF-REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp T--------------HHHHHHHHHHHHHTEEEEEE-TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred C--------------CCHHHHHHHHHHCCEEEEEC-CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 1 12357888899999999983 4568888764 67899999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=229.08 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHHHHhcC---CC---CCCC--HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCce
Q 011856 113 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~---~~---~~~~--~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.|+.++.+.+++.+++.+.. .+ .++. +...++.+.++++++ ..+++++++||++|++.+++.++ ..++++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 57788999999999987632 11 2232 567889999999986 45699999999999999999642 356688
Q ss_pred EEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 184 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
|++.+++||+..... ....|..+...+.....+. ..|+++|++.+++ ++++|+++++++++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~~---~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLGP---KTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCCT---TEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcCC---CceEEEEeccccCCc
Confidence 999999999865432 2233443332221100000 0268888888763 688999999999999
Q ss_pred cccCCHHHHHHHHHHHH----HhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHHHHHh
Q 011856 261 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~ 334 (476)
.+.+ +++|.++|+ +||++||+||+|+..... .+.....+|+++ ++|.+.+|.++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~----~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP----LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC----CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccccCCcC----CChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9998 999999999 999999999999621211 111123467764 89977777889999999998887
Q ss_pred hcCCCCc-------------------cccCCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 335 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 335 l~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+.+.... ....+.+.++++++++.++++.+.+. +..++++++.+++.+.|+++. ..
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~ 319 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLP-HV 319 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHST-TE
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 7642100 01223355778888888888876543 356666777777777776631 11
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEe--CCCcHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
.+....++.|.++.+.+.... ...++.+.|.++||++.++. ...+|++ ..++++++++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 320 HCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp EESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred EEecCccccccEEEEEcCCCC-------------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHH
Confidence 111101356788888773210 12567888899999998874 4567886 4589999999999987
Q ss_pred HH
Q 011856 469 KV 470 (476)
Q Consensus 469 ~~ 470 (476)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=226.36 Aligned_cols=328 Identities=13% Similarity=0.062 Sum_probs=226.2
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~a 175 (476)
+.|+|..+. ++.++++.+++.+++.. +++. ..+...+++++++++++. .+++++++||++|++.+++..
T Consensus 20 ~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 20 KYKLFTAGP------VACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CSEECCSSS------CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred cceeecCCC------cCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 356665332 45688999888766542 2211 146778899999988763 467999999999999999953
Q ss_pred HhccCCceEEEEeCCCCCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 176 RAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
..++++|++.+++||+. ....+...|..+...+... .+ ..|+++|++.+++. +++++|++++
T Consensus 92 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~ 154 (386)
T 2dr1_A 92 --VSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GK-------------AVKPEDLDDALRKN-PDVEAVTITY 154 (386)
T ss_dssp --SCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHC-TTCCEEEEES
T ss_pred --hcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEEe
Confidence 34667899999999883 2223333344332221111 00 13899999999642 2578888888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
+++++|.+.+ +++|.++|++||++||+||+|+.+... ..... ..+|++ +++|.++++.++|+++++++++
T Consensus 155 ~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G~~~~~~~~~ 226 (386)
T 2dr1_A 155 NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGAD--IKFDK--WGLDVVFSSSQKAFGVPPGLAIGAFSERFL 226 (386)
T ss_dssp EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTBC--CCTTT--TTCSEEEEETTSTTCCCSSCEEEEECHHHH
T ss_pred ecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCcc--ccccc--cCCcEEEEeccccccCCCceEEEEECHHHH
Confidence 8888999988 999999999999999999999643111 11122 235776 4669999655699999999998
Q ss_pred HhhcCCC-------------Cc--cccCCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 333 EMVAPAG-------------PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 333 ~~l~~~~-------------~~--~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
+.+.+.. .. ....+++.++++++++.++|+.+.+. +..++++++.+++.+.|+++ ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 304 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDI 304 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 8774210 00 12335577889999999999876543 57778888888888888875 2222
Q ss_pred ceE-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHH
Q 011856 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITA 466 (476)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~ 466 (476)
... ....+.++++.+... ....++.+.|+++||.+.++. ...+|+++. ++++++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 305 LAEPGHESPTITAVLTPPG-------------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp SSCTTCBCSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred CcCccccCCceEEEEcCCC-------------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 111 011467777776421 012578889999999998863 346788766 799999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|+++++++
T Consensus 372 l~~~~~~~ 379 (386)
T 2dr1_A 372 LREVINEL 379 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=218.61 Aligned_cols=332 Identities=14% Similarity=0.122 Sum_probs=226.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---C---CCCC---CHHHHHHHHHHHhhCCC--CCeEEEeCCH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---S---FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSG 164 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~---~~~~---~~~~~~la~~l~~~~~~--~e~v~~~~sG 164 (476)
.+|+.+++|..+. + ++.++.+.+++.+++++.. + +.+. .+...++.+.++++++. .+++++++||
T Consensus 24 ~~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAA---T-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTT---C-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCc---c-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 4677788887763 2 4678999999999988621 1 1121 24567889999999853 4899999999
Q ss_pred HHHHHHHHHHHHh--ccCCceEEEEeCCCCCCch---hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 165 TEACMGVLRLARA--FTGRERIIKFEGCYHGHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 165 seA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
++|++.+++.++. ..++++|++.+++||+... ......|..+...+... .+ ..|+++|++.
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 165 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QE-------------SFDLEHFKTL 165 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TS-------------SBCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CC-------------CcCHHHHHHh
Confidence 9999999997521 4566789999999999642 22223444333222110 00 0279999999
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcC
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG 317 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg 317 (476)
+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+..... .....++ +|++ +++|.++
T Consensus 166 l~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 166 LSE---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHYP--LDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp CCT---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTSC--CCHHHHT--CSEEEEEGGGTTS
T ss_pred hCC---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCcc--CchhhcC--CCEEEEehhhhcC
Confidence 863 6889999999999999998 999999999999999999999633211 1122233 6776 4669776
Q ss_pred CCCcEEEEEecHHHHHhhcCCCCcc-----------------ccCCCCCcHHHHHHHHH-HHHHhcC---CCHHHHHHHH
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAGPMY-----------------QAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKI 376 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~~~~-----------------~~~t~~~~~~~~aaa~a-al~~~~~---~~~~~~~~~~ 376 (476)
+ ..+|++++++++++.+.+..... ...+.+.+++.+.+++. +++.+.+ +++.++++++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 23999999999998886421110 00123456666666555 6776653 4566777777
Q ss_pred HHHHHHHHHHHhhhcCCceEee-----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------
Q 011856 377 TGELTQGIIDAGKKAGHAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 445 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------ 445 (476)
.+++.+.|+++. ++..... +.|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 314 ~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 314 THYLWQGLGQIP---QLRLYGPNPKHGDRAALASFNVAGL-----------H---ASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHHTCT---TEEEESCCGGGSCBCSEEEEEETTB-----------C---HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHHhCC---CeEEeCCCccccccCCEEEEEECCC-----------C---HHHHHHHHHHCCeEEeeccccchHH
Confidence 888887776631 2211111 2377877776310 1 2467788889999998872
Q ss_pred ------CcceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ------FEAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ------~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. ++++++++++++|+++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346788765 59999999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=220.78 Aligned_cols=323 Identities=17% Similarity=0.202 Sum_probs=218.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--C-C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--G-A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~-~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~ 170 (476)
.|+|+.++ ++.+|+|.+++.+++++.... . + ..+...++.++++++++ ..+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 56776654 468999999999999863111 0 1 12445788888888886 45799999999999999
Q ss_pred HHHHHHh--ccCCceEEEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 171 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 171 al~~ar~--~~~~~~ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+++.++. ..+++.|++.+++||+...... ...|..+...+... .+ ..|+++|++.+++ +
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RG-------------VVKLEELEKLVDE---D 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TS-------------CBCHHHHHHHCCT---T
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CC-------------ccCHHHHHHHhCC---C
Confidence 9997542 1456788888888887644432 33344333222110 01 1279999999864 6
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGG-GL 320 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~-G~ 320 (476)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ | ... .... ...+|+++ ++|.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc-
Confidence 888888888888999998 899999999999 9999999996 4 211 1111 22467775 5598773 5
Q ss_pred cEEEEEecHHH--HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 321 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 321 ~iG~~~~~~~i--~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
+|++++++++ ...+..........+++.++++++++.++|+.+.+ ++..++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999999876 22221100001124567789999999999987543 566777778888888877652 22111
Q ss_pred ee---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceE
Q 011856 397 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 450 (476)
Q Consensus 397 v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~ 450 (476)
.. ..+.++.+.+.+. + ..++.+.|.++||.+.++. ...+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI-----------R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC-----------C---HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC-----------C---HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1344555555310 1 2567888899999998742 13568
Q ss_pred EeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 451 TSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++. ++++|+++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8766 79999999999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=233.66 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=215.8
Q ss_pred EEecccChhhcc-CCCCcHHHHHHHHHHH--Hhc-CCCCCCC-HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHH
Q 011856 101 YIDYVGSWGPAI-IGHADDQVLAALGETM--KKG-TSFGAPC-LLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~-lG~~~p~v~~a~~~~l--~~~-~~~~~~~-~~~~~la~~l~~~~~-~~e~v~~~~sGseA~--~~al 172 (476)
+|||..|..... ++ .++.+.+++.+++ ..+ ..++|+. ....+|.+.++++++ .+++|++++|+++++ ..++
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~ 112 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLIS 112 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHH
Confidence 578877742100 22 3456777776553 122 1223332 224556666666655 568999999999997 5555
Q ss_pred HHHHhc--cC--------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 173 RLARAF--TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 173 ~~ar~~--~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
+....- .+ ++.|++.+++|+++...+ ...|..+...+... .+ .|+++|++.+++
T Consensus 113 ~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~ 176 (422)
T 3d6k_A 113 WSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-EHFGFEMINVPMTD-EG--------------PDMGVVRELVKD 176 (422)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHTS
T ss_pred HHhcCcccccccccccCCCCEEEEeCCccHHHHHHH-HHcCCEEEecCCCC-CC--------------CCHHHHHHHHhc
Confidence 643211 01 236999999999865443 33344322211100 01 279999999974
Q ss_pred CCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEecccc--Cc-ccccc-chh-------hccCCCCch
Q 011856 243 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMT--GF-RLAYG-GAQ-------EYFGVTPDL 309 (476)
Q Consensus 243 ~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~--g~-r~g~~-~~~-------~~~g~~pDi 309 (476)
. ++++|++.| .+|++|.+. +.+++++|.++|+ +||++||+||+|. +| +.+.. ... +..+....+
T Consensus 177 ~--~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 P--QVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp T--TEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred C--CCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2 578877555 445577766 4556999999999 9999999999996 46 43321 111 122334445
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL---KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L 384 (476)
.+|||..++|+|+||+++++++++.+.. .....+++.|++++.++.++|+.. .+ ++..++++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYAS---HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899996689999999999999988762 334446778999999988887531 11 223444555666666777
Q ss_pred HHHhhhcCCce-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeC
Q 011856 385 IDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 453 (476)
Q Consensus 385 ~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~ 453 (476)
.+...+.+... ..+..|.++++.+... + ...+.+.|.++||++.+++ ...+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~-----------~---~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG-----------T---ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT-----------C---HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC-----------C---HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 66544443222 2334677888887421 1 2456778889999999832 23578887
Q ss_pred C-CcHHHHHHHHHHHHHHHHHh
Q 011856 454 A-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
. .+++++++++++|+++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 7 69999999999999998765
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=234.73 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=201.0
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHHHHHhc-cC---------CceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-TG---------RERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA~--~~al~~ar~~-~~---------~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
..+|.+.++++++ .+++|++++|+++++ +.+++..... .+ ++.|++.+++|+++... +...|..+.
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~-~~~~g~~~~ 158 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI-TERFGFEMI 158 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH-HHHTTCEEE
T ss_pred cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH-HHHcCCEEE
Confidence 3456666666555 568999999999999 5777743221 21 68899999999885443 333343322
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHH-HHhCCEEEE
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIF 285 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~ 285 (476)
.++... .+ -|+++|++.++. +++++|+++|. +|++|.+.+.++ +++|.++| ++||++||+
T Consensus 159 ~v~~~~-~g--------------~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~-~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 159 SVPMNE-DG--------------PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDV-AKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp EEEEET-TE--------------ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHH-HHHHHHCCCSSTTCEEEE
T ss_pred EeCCCC-CC--------------CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHH-HHHHHHHHhhcCCCEEEE
Confidence 211100 01 189999999953 36888888865 455788776555 99999999 999999999
Q ss_pred eccccCc-ccccc----chhh------ccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHH
Q 011856 286 DEVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (476)
Q Consensus 286 DEv~~g~-r~g~~----~~~~------~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~ 354 (476)
||+|.++ ..+.. .... ..+....+.+|||.+++|+|+||+++++++++.+.. .....+++.+++.+
T Consensus 221 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~q 297 (427)
T 3ppl_A 221 DNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG---HAGIRGIGPNKVNQ 297 (427)
T ss_dssp ECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHH
T ss_pred ECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH---HhhcccCCCCHHHH
Confidence 9999885 22211 1111 223334456899996689999999999999888762 33445678889999
Q ss_pred HHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 355 TAGIHTLKRL---KE--PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 355 aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
.++.++|+.. .+ .+..+.++++.+.+.+.|.+.....+ +....+..|.++++.+... ...
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~ 363 (427)
T 3ppl_A 298 LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TAS 363 (427)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHH
Confidence 8888777531 11 23444555566666666665433332 2222344677888887431 125
Q ss_pred HHHHHHHHCCeEeccCC----------CcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 429 RFYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 429 ~~~~~l~~~Gv~~~~~~----------~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+.|.++||++.+++ ...+|+++.. ++++|++++++|+++++++
T Consensus 364 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 364 RVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 67788999999999832 2457887666 8999999999999998764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=226.89 Aligned_cols=323 Identities=15% Similarity=0.119 Sum_probs=221.8
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ 174 (476)
++.|+|..+. ++.+|++.+++.+++.+ .++. ..+...+++++++++++ ..+ ++++++||++|++.+++.
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~ 104 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 104 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence 4567774432 45789999998776543 2211 23567889999998876 456 899999999999999996
Q ss_pred HHhccCCceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
+ ..++++|++.+++||+.. ...+...|..+...+... .+ ..|+++|++.++++ ++++|+++
T Consensus 105 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~ 166 (393)
T 1vjo_A 105 A--VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALV 166 (393)
T ss_dssp H--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEE
T ss_pred c--cCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEe
Confidence 4 456678999999998821 122233344332221111 00 13899999999752 46788888
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~ 330 (476)
++++++|.+.+ +++|.++|++||++||+||+|+ + ... . ......+|+++ ++|.++++.++|+++++++
T Consensus 167 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~--~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 167 HAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP--I--FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC--C--CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred ccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC--C--cccccCccEEEEcCcccccCCCceEEEEECHH
Confidence 88888999988 8899999999999999999997 4 211 1 11233567774 5699986559999999999
Q ss_pred HHHhhcCC----CCccc------------cCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 331 IMEMVAPA----GPMYQ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 331 i~~~l~~~----~~~~~------------~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+++.+... ..... ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.+.|+++ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 315 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--G 315 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 98887421 11111 1233 6788999999999987643 467788888888898888875 2
Q ss_pred cCCceEeee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEe---CCCcHHHH
Q 011856 391 AGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDI 460 (476)
Q Consensus 391 ~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~---~~~t~e~i 460 (476)
..+... .+ .+.++++.+... ....++.+.|+++ ||.+.++. ...+|++ +..+++++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i 381 (393)
T 1vjo_A 316 LSLHVE-KEYRLPTLTTVCIPDG-------------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESV 381 (393)
T ss_dssp CCBSSC-GGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred CcccCC-ccccCCcEEEEEcCCC-------------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHH
Confidence 222111 11 234556655211 0125688889888 99998764 3467887 34578889
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
++++++|++++
T Consensus 382 ~~~~~~l~~~l 392 (393)
T 1vjo_A 382 DQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=231.15 Aligned_cols=283 Identities=10% Similarity=0.038 Sum_probs=181.0
Q ss_pred CCeEEE--eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCC-CCCCCCCCceeec
Q 011856 155 IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTA 228 (476)
Q Consensus 155 ~e~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 228 (476)
.++|++ |+||++|+..++.+...+.+++.|++.+++|+++...+.. ..|..+..+++.+.. +. .
T Consensus 117 ~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~---------~- 186 (448)
T 3meb_A 117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGEL---------E- 186 (448)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCS---------S-
T ss_pred cCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCC---------C-
Confidence 579999 9999999998766554556778899999888775433321 444444332221111 00 0
Q ss_pred cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhcc-
Q 011856 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF- 303 (476)
Q Consensus 229 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~~- 303 (476)
-|+++|++.+++.++..+++++...+|++|.+.+.+ .+++|.++|++||+++|+||+|.+| ..+. ......+
T Consensus 187 --~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~ 263 (448)
T 3meb_A 187 --IDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEA-QWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV 263 (448)
T ss_dssp --BCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH
T ss_pred --cCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHH-HHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh
Confidence 089999999986544567777666677788776544 4999999999999999999999988 4331 1222221
Q ss_pred CCCCc---hhhhhhhcC-CCCcEEEE--Ee--------c-H----HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh
Q 011856 304 GVTPD---LTTLGKIIG-GGLPVGAY--GG--------R-R----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 364 (476)
Q Consensus 304 g~~pD---i~t~sK~lg-~G~~iG~~--~~--------~-~----~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (476)
+..++ +.++||.+| .|+|+||+ ++ + + ++++.+. ......+.+.+.+++.++.++|+..
T Consensus 264 ~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~ 340 (448)
T 3meb_A 264 DAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT---LQIRKTWSMSAIHGAYIVQVIVHDK 340 (448)
T ss_dssp HTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSH
T ss_pred hcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH---HHHhcccCCccHHHHHHHHHHhcCh
Confidence 23345 337999999 79999998 66 3 4 5555554 1223344456778887777776421
Q ss_pred -------cC-CCHHHHHHHHHHHHHHHHHHHhhhc-----CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHH
Q 011856 365 -------KE-PGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (476)
Q Consensus 365 -------~~-~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (476)
+. ++..++++++++++.+.|+++.... .+....+..|.+.++.+. .++.
T Consensus 341 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~ 402 (448)
T 3meb_A 341 RLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT------------------PEHV 402 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC------------------HHHH
Confidence 11 3455666677777777776642100 011111223444333221 2344
Q ss_pred HHH-HHCCeEeccCCCcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 432 RGM-LEEGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 432 ~~l-~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
..+ .++||++.++. .|+++.. ++++|++++++|+++++++
T Consensus 403 ~~ll~~~gV~v~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 403 DYLKEKWSIYLVKAG---GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp HHHHHHHCEEECSGG---GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCEEEeCCC---cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 555 56799999854 4887665 8889999999999998764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=227.18 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=214.7
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.+|++.+++.+++.. ++. ...+...+++++++++++ .. +++++++||++|++.+++.+ ..++++|++...+||
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~ 109 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIW 109 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccC--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCch
Confidence 578888888664321 111 123556788899998876 23 36999999999999999964 556788888888876
Q ss_pred CCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+.. .......|..+...+..... ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 169 (393)
T 3kgw_A 110 GMRAAEIADRIGARVHQMIKKPGE--------------HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDG 169 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred hHHHHHHHHHcCCceEEEeCCCCC--------------CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHH
Confidence 532 23333344433222111110 12899999999853 5778888888888999988 889
Q ss_pred HHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc------
Q 011856 272 IRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 342 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~------ 342 (476)
|+++|++||++||+||+|+ |. ..+..+.++ +|++ +++|+++++.++|++++++++++.+.......
T Consensus 170 i~~l~~~~~~~li~De~~~~g~---~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
T 3kgw_A 170 FGELCHRYQCLLLVDSVASLGG---VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTD 244 (393)
T ss_dssp HHHHHHHTTCEEEEECTTTTTT---SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred HHHHHHHcCCEEEEECCccccC---cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeec
Confidence 9999999999999999996 21 111122233 4665 45699987777999999999998876321100
Q ss_pred --------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEE
Q 011856 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (476)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (476)
...+++.++.+++++.++++.+.+ +++.++++++.+++.+.|+++.............+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 324 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITT 324 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEE
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEE
Confidence 112345678888888888887654 566788888888888888876211110111122345556
Q ss_pred EEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC-C--CcHHHHHHHHHHHHHHHHHh
Q 011856 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~-~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.+. ....++.+.|+++ ||++.++. ...+|+++ . ++++++++++++|+++++++
T Consensus 325 ~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 325 VTVPAG-------------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp EECCTT-------------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred EeCCCC-------------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 665321 1125788888888 99999753 34578765 3 59999999999999999865
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=221.50 Aligned_cols=328 Identities=13% Similarity=0.070 Sum_probs=221.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
..|+|..+. ++.+|.+.+++.+++.. +.+. ..+...++.++++++++ ..+++++++||++|+..+++.+
T Consensus 9 ~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~- 79 (392)
T 2z9v_A 9 PVITLTAGP------VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL- 79 (392)
T ss_dssp CSEECSSSC------CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-
T ss_pred cceeecCCC------cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-
Confidence 356765432 45789999998876653 2221 23456788999999886 4579999999999999999964
Q ss_pred hccCCceEEEEeCCCCCCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 177 AFTGRERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..++++|++.+++||+... ......|..+...+... .+ ..|+++|++.+++. +++++|+++++
T Consensus 80 -~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~~ 143 (392)
T 2z9v_A 80 -ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NE-------------AIDPQAVADMLKAH-PEITVVSVCHH 143 (392)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TS-------------CCCHHHHHHHHHHC-TTCCEEEEESE
T ss_pred -cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEecc
Confidence 4566789999999887531 11122344332221111 01 12899999999642 25778888888
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~ 333 (476)
++++|.+.+ +++|.++|++||+++|+||+|+.-.. ......+ .+|++ +++|.++++.++|++++++++++
T Consensus 144 ~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~ 215 (392)
T 2z9v_A 144 DTPSGTINP----IDAIGALVSAHGAYLIVDAVSSFGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSERAWA 215 (392)
T ss_dssp EGGGTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHHHHH
T ss_pred CCCCceecc----HHHHHHHHHHcCCeEEEEcccccCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHHHHH
Confidence 888999988 99999999999999999999962111 1111222 35665 57898876556799999999988
Q ss_pred hhcCCC--C--c-------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 334 MVAPAG--P--M-------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 334 ~l~~~~--~--~-------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
.+.+.. + . ......+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ ...+
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 293 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSV 293 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 775311 0 0 0112334577777777788876643 356778888888888888775 2222
Q ss_pred ce-E-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHH
Q 011856 394 AI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHT 463 (476)
Q Consensus 394 ~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~ 463 (476)
.. . ....+.++++.+... ....++.+.|.++ ||.+.++. ...+|+++ .+++++++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 294 WAASDSIASPTTTAVRTPDG-------------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp SSSSGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred ccCCccccCCceEEEECCCC-------------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 11 0 012466677766311 0125688889887 99998763 34678874 5899999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|+++++++
T Consensus 361 ~~~l~~~~~~~ 371 (392)
T 2z9v_A 361 LTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998765
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=228.54 Aligned_cols=349 Identities=14% Similarity=0.053 Sum_probs=211.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
.|+.||||.+++++ +.|.+++.+++..+...+.+.+...+|++++++++ +.++++|++||++|++.+++.++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 46789999887532 78888888887765433335567788899998888 56899999999999999999875
Q ss_pred hc---cCCce---EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCC-CC
Q 011856 177 AF---TGRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-GE 246 (476)
Q Consensus 177 ~~---~~~~~---ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~~ 246 (476)
.+ ++ +. ||+. ..+|+.+...+...|..+.....+. .++. ....++ .|+++|++.++++. ++
T Consensus 113 ~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-----~~~~~~~~~~d~~~le~~i~~~~~~~ 183 (467)
T 1ax4_A 113 KYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS-----ETYDDWKGDFDIKKLKENIAQHGADN 183 (467)
T ss_dssp HHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT-----TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred HhhccCC-CccceEEEe-ccccchhhHHHhccCCceecccccc--cccc-----cccCCcccccCHHHHHHHHHhcCCCC
Confidence 43 33 33 6655 3333544555555554332211100 0000 000112 28999999997532 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--cc------ccccch-hhccC----CCCchh--h
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR------LAYGGA-QEYFG----VTPDLT--T 311 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~r------~g~~~~-~~~~g----~~pDi~--t 311 (476)
+++|++++++|++|...++.+++++|+++|++||++||+||++.. .. .+..+. ...++ ..+|++ +
T Consensus 184 ~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s 263 (467)
T 1ax4_A 184 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 263 (467)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEe
Confidence 899999999888744556678899999999999999999998742 00 011000 00000 124554 5
Q ss_pred hhhhcCCCCcEE-EEEec-H-HHHHhhcCCCCc-cccCCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011856 312 LGKIIGGGLPVG-AYGGR-R-DIMEMVAPAGPM-YQAGTLSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 312 ~sK~lg~G~~iG-~~~~~-~-~i~~~l~~~~~~-~~~~t~~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (476)
++|.++ +|+| +++++ + ++++.+...... ....++++++..+.+ ..++++.+.+++..++..++.+++.+.|++
T Consensus 264 ~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 264 AKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp TTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 778774 4654 55666 6 787765421111 111244444444333 333566544334566666778888888877
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEecc-C----------C------Ccc
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAP-S----------Q------FEA 448 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~-~----------~------~~~ 448 (476)
. .+.+. .+..|.++++.+..- ...+. .......++.+.| .++||.+.+ + + ...
T Consensus 342 ~--~~~~~--~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 342 A--GIPIQ--YPTGGHAVFVDCKKL-VPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp T--TCCBC--SSCCSSEEEEESTTT-CTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred C--CCCcc--cCCCceEEEEehhhh-ccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence 2 23222 233455566552110 00000 0011235788888 789999987 2 1 145
Q ss_pred eEEeCC---CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA---HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~---~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. +|++|+++++++|++++++
T Consensus 413 iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 413 MRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 677654 7999999999999988765
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-26 Score=229.41 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=207.2
Q ss_pred CEEEecccChhhccCCC-CcHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGAP----CLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~~~~~----~~~~~~la~~l~~~~~---~~e~v~~--~~sGseA~ 168 (476)
..+|||..| ++++. ++|.+.+++.++.......+.+ .++++++++++..... ..+++.+ +++|++|+
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 357888888 66444 6788888888773332211122 3455555555532221 1567754 99999999
Q ss_pred HHHHHHHHhccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+.+..+++.+.++ +.|++.+++|+++. ..+...|..+...+.....+. ..|+++|++.++++++..
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNHE-SIFAKAGMELTPYSYYDPATK------------GLNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHHH-HHHHHTTCEEEEECCEETTTT------------EECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHH-HHHHHcCCeEEEEEeecCcCC------------cCcHHHHHHHHHhCCCCc
Confidence 9988877777655 78888888887753 334444443332221000000 018999999997654456
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cc-hhhccCCCCchh---hhhhhcC-C
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GG-AQEYFGVTPDLT---TLGKIIG-G 318 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~-~~~~~g~~pDi~---t~sK~lg-~ 318 (476)
++++++..+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. .. .....+..++++ +|||.+| .
T Consensus 185 ~~i~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPTHDD-WRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 66665555677787766444 999999999999999999999988 4431 12 222234556654 7999999 7
Q ss_pred CCcEEEE---EecHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 383 (476)
Q Consensus 319 G~~iG~~---~~~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~ 383 (476)
|+|+||+ +++++ +++.+. ......+++.+++++.++.++|+.. +. ++.+++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLA---LLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 56777 555554 1222345566788888888887632 11 45566777777777777
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeC-CCcHHHHH
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQ 461 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~-~~t~e~i~ 461 (476)
|+++.....+....+..|.++++.+. .++...++ ++||++.|+. |+++ .+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~ 398 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGLT------------------REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVE 398 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCCC------------------HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHH
Confidence 77642100011111223333332220 23445555 6799999863 5653 46788899
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
+++++|++++
T Consensus 399 ~~~~~l~~~l 408 (409)
T 4eu1_A 399 YVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=217.37 Aligned_cols=326 Identities=14% Similarity=0.131 Sum_probs=218.3
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ 174 (476)
++||..| +++ .+|+|.+++.+++. +.++ .+...++.++++++++. .+++++++||++|++.+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5666665 333 78999999877532 1111 14456777788777752 24799999999999999996
Q ss_pred HHhccCCceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
+ ..++++|++.++.+|+.. .......|..+...+... . ...|+++|++.+++++ ++++|++.
T Consensus 76 ~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------~~~d~~~l~~~l~~~~-~~~~v~~~ 138 (366)
T 1m32_A 76 A--LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-V-------------ARPDVQAIDAILNADP-TISHIAMV 138 (366)
T ss_dssp S--CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-T-------------SCCCHHHHHHHHHHCT-TCCEEEEE
T ss_pred h--cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-C-------------CCCCHHHHHHHHhcCC-CeEEEEEe
Confidence 4 235567888888888742 233334454433222111 0 1238999999998642 35666666
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI 331 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i 331 (476)
..++++|.+.+ +++|.++|++||++||+||+|+..... .... ...+|++ +++|+++++.++|++++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~--~~~~di~~~s~~K~~~~~~g~G~~~~~~~~ 210 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIA--ALHIDYLISSANKCIQGVPGFAFVIAREQK 210 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTT--TTTCSEEEEESSSTTCCCSSEEEEEEEHHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--cccc--ccCccEEEecCcccccCCCceEEEEECHHH
Confidence 66677899988 999999999999999999999632221 1111 1236766 578999766678999999999
Q ss_pred HHhhcCCCCccc---------------cCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 332 MEMVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 332 ~~~l~~~~~~~~---------------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
++.+......+. ...++.++++++++.++++.+.+ ++..++++++.+++.+.|+++ ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~ 288 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFN 288 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCe
Confidence 887764211110 01357788888888889887654 246778888888888888775 222
Q ss_pred CceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEeCC--CcHHHHHHHHHH
Q 011856 393 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLA--HSSDDIQHTITA 466 (476)
Q Consensus 393 ~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~~~--~t~e~i~~~~~~ 466 (476)
+.... ...|.++++.+.+.. .....++.+.|.++||++.++. ...+|+++. ++++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 357 (366)
T 1m32_A 289 TLLDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTA 357 (366)
T ss_dssp BSSCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHH
T ss_pred eccCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHH
Confidence 21111 124557788764200 0012578889999999998763 346777644 689999999999
Q ss_pred HHHHHHH
Q 011856 467 AEKVKMR 473 (476)
Q Consensus 467 l~~~~~~ 473 (476)
|++++++
T Consensus 358 l~~~~~~ 364 (366)
T 1m32_A 358 IRTAMYW 364 (366)
T ss_dssp HHHHCTT
T ss_pred HHHHHHh
Confidence 9988764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=224.10 Aligned_cols=327 Identities=11% Similarity=0.070 Sum_probs=211.3
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHh--cCCCC---C--CCH---HHHHH-HHHHHhhCCCCCeEEEeCCHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFG---A--PCL---LENVL-AEMVISAVPSIEMVRFVNSGTEA 167 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~--~~~~~---~--~~~---~~~~l-a~~l~~~~~~~e~v~~~~sGseA 167 (476)
++|+|+.++. +++ +|+|.+++.+++.+ ...+. + ..+ ..+++ .++++++++.....++++||++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 3578888775 344 89999999998865 11111 1 112 22222 24777777422233567789999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCc--hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
++.+++.+ ..+++.|++.+++|++.. ...+...|..+....++..+. -...|+++|++.+++.
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~-- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPD-----------TELIDLEEVRRLALEH-- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTT-----------TSSCCHHHHHHHHHHH--
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcc-----------cCccCHHHHHHHHhhc--
Confidence 99999964 456678999998888763 122222222111110110000 0113899999999742
Q ss_pred CeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c-cccccchhhccCCCCchh--hhhhhcCCCC
Q 011856 246 EIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 246 ~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
++++|++ +|+++ .+.+ +++|.++|++||++||+||+|++ + ..+.... ..+ .+|++ ++||+++ |+
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4566666 66654 4555 99999999999999999999975 6 4443221 112 26776 7999887 66
Q ss_pred cEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 321 PVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 321 ~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
++|+++++ +++++.+.... ..+.+.+.++..++++.++++.+.. +++.++++++.+++.+.|+++ ...+...
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 307 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLI--FPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GYRIVTG 307 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHH--TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGG
T ss_pred CceEEEECCHHHHHHHHhhh--cccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--CceeecC
Confidence 88999999 79988775311 1223345567777777888887643 567788888888888888775 1211110
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeCC------CcHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSDDI 460 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~~------~t~e~i 460 (476)
++.|.++++.+..... ...++.+.|.++||++.++. ...+|+++. ++++++
T Consensus 308 -~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 308 -GTDNHLFLVDLRPKGL------------TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp -SCSSSEEEEECGGGTC------------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred -CCCceEEEEECcccCC------------CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 3467888887742110 12567788899999998753 234677653 799999
Q ss_pred HHHHHHHHHHHHH
Q 011856 461 QHTITAAEKVKMR 473 (476)
Q Consensus 461 ~~~~~~l~~~~~~ 473 (476)
++++++|++++++
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=217.54 Aligned_cols=333 Identities=15% Similarity=0.102 Sum_probs=219.1
Q ss_pred EEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
.++|.|++.+.++...++...++|..++..+.+ .++++++++.++..+.++|++||++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~ 67 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-----------------NDLLSNLKTVYNAEAAVIIPGSGTYGMEAV 67 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-----------------HHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-----------------HHHHHHHHHHhCCCCEEEEcCChhHHHHHH
Confidence 467899999999887766566788777665433 244455555554336789999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHh-hcCCC--CccCCCCCC--CCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSG--VATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~-~~g~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
++. +.++++||+++++||+.....+. ..|.+ +...+.+.. .+. ...+...|++++++.+++. +
T Consensus 68 ~~~---~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~-------~~~~~~~d~~~l~~~i~~~--~ 135 (379)
T 3ke3_A 68 ARQ---LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEA-------PKPFAPVDIETAVAKIKED--K 135 (379)
T ss_dssp HHH---HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSS-------CCCEECCCHHHHHHHHHHH--T
T ss_pred HHh---CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccc-------cCCCCCCCHHHHHHHHhhc--C
Confidence 873 45788999999999986443332 23321 111111100 000 0001124899999999642 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 326 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~ 326 (476)
+++|++..+.+.+|.+.| .+++++|.++|++||++||+||+|+| +..+..+.+++...+.+++|+++++.++|+++
T Consensus 136 ~~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~ 211 (379)
T 3ke3_A 136 SAIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVM 211 (379)
T ss_dssp CSEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEE
T ss_pred CcEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEE
Confidence 667888777777887765 66799999999999999999999973 23344455676555667889998766799999
Q ss_pred ecHHHHHhhcCCC--Cccc-----------------cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011856 327 GRRDIMEMVAPAG--PMYQ-----------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 327 ~~~~i~~~l~~~~--~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (476)
+++++++.+.+.. ..+. ..+++.|+..+++..++|+.+.+ ++..++.+++.+++++.|
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9999988876421 1111 01236678888888899988765 467777888888888888
Q ss_pred HHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe--
Q 011856 385 IDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS-- 452 (476)
Q Consensus 385 ~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~-- 452 (476)
+++..+ +..... ..+.+..+.+. +. . ..+.+.|.++||++.++. ...+|++
T Consensus 292 ~~~g~~--~~~~~~~~~~~i~~~~~~-------------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~ 354 (379)
T 3ke3_A 292 TDKGIE--SVAAEGFEAPGVVVSYTE-------------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF 354 (379)
T ss_dssp HHTTCC--BSBCTTCBCSSEEEEECS-------------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC
T ss_pred HHcCCE--ecCCccccCceEEEEccC-------------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC
Confidence 876321 111100 11222222221 11 1 123567889999988764 3456775
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++||++++++|+++++++
T Consensus 355 ~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 355 GLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp SHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=221.41 Aligned_cols=315 Identities=13% Similarity=0.091 Sum_probs=213.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.+|++.+++.+++.... .....+...++.++++++++ .. +++++++||++|++ +++. ...++++|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 47888888876553211 11124566788888988876 34 78999999999999 8874 2456778999999998
Q ss_pred CCchhHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+.....+ ...|..+...+.... + ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPG-D-------------YVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTT-C-------------CCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCC-C-------------CCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 7432222 223332222211110 0 12899999999864 5889999999999999998 999
Q ss_pred HHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhh-cCCC---------
Q 011856 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV-APAG--------- 339 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l-~~~~--------- 339 (476)
|.++|++||++||+||+|+.... ...... ..+|++ +++|+++++.++|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAE--EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTS--CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHhcCCEEEEECcccccCc--cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 99999999999999999962211 111111 235666 5679998777799999999998877 2100
Q ss_pred Ccc---------ccCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceE--eeeeceeE
Q 011856 340 PMY---------QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMF 404 (476)
Q Consensus 340 ~~~---------~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~ 404 (476)
... ....+ +.+...+++..++++.+.+ +++.++++++.+++.+.|+++ ...+... ....+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 302 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVT 302 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEE
Confidence 000 11122 4566777777788876654 467788888888888888876 2221111 11235666
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---cceEEeC--CCcHHHHHHHHHHHHHHHHHh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+... ...++.+.|.++||.+.++.. ..+|+++ .++++|+++++++|+++++++
T Consensus 303 ~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 303 GVILKVA--------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp EEECSSS--------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCC--------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 6666321 125788999999999987652 4577754 479999999999999998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=210.55 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=213.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC-CC-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~-~~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~ 168 (476)
+..|+|+.++ +..+|++.+++.+++.+.. .. .+ ..+...++.++++++++ .+++++|++||++++
T Consensus 26 ~~~~ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAG------MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGC------CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCc------CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 4678887665 1468999999999998632 11 12 13556788889988886 457999999999999
Q ss_pred HHHHHHH-HhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
..+++.. +...+++.|++.++.|++........ .|..+...+.....+. -|+++|++.+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~-------------~d~~~l~~~l~~-- 164 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGE-------------LPTWQWESLISK-- 164 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCC-------------CCGGGHHHHCCT--
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCC-------------cCHHHHHHHhCC--
Confidence 9998842 12456678888888888765444332 3443322221100110 178899998863
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCc
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 321 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~ 321 (476)
++++|+++++++++|.+.+ +++|.++|++||++||+||+|+ |.. ......++ +|++ +++|.+|++
T Consensus 165 -~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~---~~~~~~~~--~d~~~~s~~K~~g~~-- 232 (406)
T 3cai_A 165 -STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAAAPYR---LLDIRETD--ADVVTVNAHAWGGPP-- 232 (406)
T ss_dssp -TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTTTTTC---CCCHHHHC--CSEEEEEGGGGTSCS--
T ss_pred -CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccccCCC---CCCchhcC--CCEEEeehhhhcCCC--
Confidence 6889999999999999998 8999999999999999999995 211 11122333 5665 578987643
Q ss_pred EE-EEEecHHHHHhhcCCCCcc------ccCCCCCcHHHHHHHHHHHHHhcC-----------------CCHHHHHHHHH
Q 011856 322 VG-AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKE-----------------PGTYEYLNKIT 377 (476)
Q Consensus 322 iG-~~~~~~~i~~~l~~~~~~~------~~~t~~~~~~~~aaa~aal~~~~~-----------------~~~~~~~~~~~ 377 (476)
+| ++++++++++.+.+....+ .....+.|+++++++.++++.+.+ +++.++++++.
T Consensus 233 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3cai_A 233 IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVF 312 (406)
T ss_dssp CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHH
Confidence 89 9999999988876421100 011334677888788888887654 23444555556
Q ss_pred HHHHHHHHHHhhhcCCceEee---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------
Q 011856 378 GELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 445 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------- 445 (476)
+++.+.|++ .+...... ..+.++++.+... + ..++.+.|.++||.+.++.
T Consensus 313 ~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~L~~~gi~v~~g~~~~~~~~~g 374 (406)
T 3cai_A 313 DYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV-----------P---ADRVVQRLADNGILAIANTGSRVLDVLG 374 (406)
T ss_dssp HHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB-----------C---HHHHHHHHHHTTEECEECCSCHHHHHHT
T ss_pred HHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc-----------C---HHHHHHHHHHCCcEEecCChHHHHHHcC
Confidence 666666554 22111111 1344666665310 1 2567888889999998753
Q ss_pred ----CcceEEeCC--CcHHHHHHHHHHHHH
Q 011856 446 ----FEAGFTSLA--HSSDDIQHTITAAEK 469 (476)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~~~~l~~ 469 (476)
...+|+++. ++++|+++++++|++
T Consensus 375 ~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 375 VNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 246788654 489999999999875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=216.33 Aligned_cols=324 Identities=13% Similarity=0.027 Sum_probs=204.6
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
+++|.++ ..|+.+|++.+++.+++.......+..+...+++++++++++ ..+++++++||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5666554 356789999999999887532233467889999999999876 5678999999999999999964 23
Q ss_pred CCceEEEEeCCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC----CCCeEEEEEcc
Q 011856 180 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 254 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep 254 (476)
++++|++.+++||+.... .+...|..+...+.. ... -|+++|++.+++. +.++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~--------------~d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGK--------------LRVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSC--------------CCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCe--------------ecHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567888888888876543 233334333222111 000 1699999999753 12378888887
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc-chhhccC--CCCchhh--hhhhcCCCCcEEEEEecH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFG--VTPDLTT--LGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~-~~~~~~g--~~pDi~t--~sK~lg~G~~iG~~~~~~ 329 (476)
+ +++|.+.+ .+++++|.++|++||++||+||+|.+|..+.. .....++ ..+|+++ .+|. ++...+|++++++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 7 46787776 57799999999999999999999965511111 0011111 2356654 5674 3335678999999
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++.+.... .....+++.+....++..+ .+++ ++..++++++.+++.+.| +. ....+. .+..+.++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCccceEEE
Confidence 8877664210 0022223323222222222 2333 346677777788888777 43 122211 1233444444
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccC---CCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~---~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+. .++.+.|+++ ||++.+. +...+|+ ++.++++++++++++|+++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 331 3677889998 9988432 2345777 45689999999999999988764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=213.96 Aligned_cols=322 Identities=17% Similarity=0.092 Sum_probs=199.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
..+|||.++ + .++.+|++++++.+++........+.+...+++++++++++..++++|++||++|++.+++. +
T Consensus 7 ~~~id~~~~---~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~---~ 79 (356)
T 1v72_A 7 PPALGFSSD---N-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA---M 79 (356)
T ss_dssp CCCCBCSCG---G-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT---S
T ss_pred CceEeeccC---C-ccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHH---h
Confidence 468898876 3 35689999999998864211122256788899999999886333589999999999999994 3
Q ss_pred cCCceEEEEeCCCCCCchhH--Hhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH-HHhcC----CCCeEE
Q 011856 179 TGRERIIKFEGCYHGHADPF--LVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAA 249 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~--~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~----~~~~a~ 249 (476)
.++++.|+....+|+..... +... |..+...+.. .+ .-|+++|++ .+++. ++++++
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~-------------~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AA-------------KLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GG-------------CCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred cCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CC-------------eEcHHHHHHHhhhcchhhccCCceE
Confidence 44444444445555543332 3333 4433221110 00 117999999 88642 125788
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccccchhhccC--CCCchh--hhhhhcCCCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~~~~~~~~g--~~pDi~--t~sK~lg~G~~i 322 (476)
|++++++ ++|.+. +.+++++|.++|++||++||+||+|..+ . .+.. ...++ ...|++ +++|. |.|+
T Consensus 145 v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~~~ 217 (356)
T 1v72_A 145 VSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GVLA 217 (356)
T ss_dssp EEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TCSS
T ss_pred EEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CCcC
Confidence 9888865 578764 5667999999999999999999999643 1 1211 11111 134544 57898 3366
Q ss_pred E--EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 323 G--AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 323 G--~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
| ++++++++++.+.... ...++.... ...++.++++.++++ ++.++++++.+++++.|+++ .++....
T Consensus 218 G~g~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~ 290 (356)
T 1v72_A 218 AEAIVLFNTSLATEMSYRR--KRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---GGVEVLG 290 (356)
T ss_dssp CEEEEESSGGGHHHHHHHH--HHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---TTEEEES
T ss_pred ccEEEEECHHHHhhHHHHh--hccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC---CCcEEcc
Confidence 6 7778999887764210 111222221 223334455555542 24455566666666666542 1222212
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+.++++.+. .++.+.|.++||.+.++. ...+|++ ..++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 344556666542 267788899999998754 2457774 567999999999999988765
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 353 ~ 353 (356)
T 1v72_A 353 T 353 (356)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=217.77 Aligned_cols=316 Identities=13% Similarity=0.064 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~--~~~~~~la~~l~~~~~-~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
.+|+|.+++.+++.. ..++ .+...+++++++++++ .. +.+++++||++|++.+++.. ..++++||+.+++
T Consensus 30 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~ 104 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY---FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGG 104 (376)
T ss_dssp CCHHHHHHHTSCCCC---CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESS
T ss_pred CcHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCC
Confidence 478888888765432 1122 2556788888888875 22 34555899999999999963 3567789999888
Q ss_pred CCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 011856 191 YHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (476)
Q Consensus 191 yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (476)
||+.... .....|..+...+.+.... .|+++|++.++ +++++|+++++++++|.+.+ +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l 163 (376)
T 3f0h_A 105 SFGHRFVQLCEIHEIPYVALKLEHGKK--------------LTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----T 163 (376)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTCC--------------CCHHHHHTTTT---SCCCEEEEESEETTTTEECC----H
T ss_pred hhhHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHhhc---cCceEEEEecccCCcceecC----H
Confidence 8874422 2222343332211111111 17899988764 36788888888888999998 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCC-cc-----
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY----- 342 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~-~~----- 342 (476)
++|+++|++||++||+||+|+.+ +. +..+.+++...+.+++|+++++.++|++++++++++.+.+... .+
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 99999999999999999999754 32 2234455544455788999866678999999999888764211 00
Q ss_pred --------ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCC
Q 011856 343 --------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (476)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (476)
....++.+..+++++.++++.+.+.+..+++.+....+++.|.+...+.++..... ..+.++.+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--- 317 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTT--- 317 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESS---
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCC---
Confidence 01233445555577778887765443344444444455555544443333211111 122222222110
Q ss_pred cCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC--CCcHHHHHHHHHHHHHHHHHh
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....++.+.|+++ ||.+.++. ...+|+++ .+|++|+++++++|++++++-
T Consensus 318 -----------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 318 -----------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp -----------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred -----------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1135788889988 99998763 34578864 679999999999999998753
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=219.97 Aligned_cols=317 Identities=13% Similarity=0.077 Sum_probs=213.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~--~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
.+|++.+++.+++. .+.. ..+...+++++++++++ ..+ .+++++||++|++.+++.+ ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI---GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCCC---CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhcccc---ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 47888888765431 1111 12456788888888876 334 4889999999999999964 56778999999999
Q ss_pred CCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|+.. ...+...|..+...+.+... .-|+++|++.++++ ++++|+++++++++|.+.+ ++
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 158 (411)
T 3nnk_A 99 FGHLLCEIARRCRAEVHTIEVPWGE--------------VFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LA 158 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCC--------------CCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HH
Confidence 8742 22333334433222111100 01899999999753 5788888888889999988 88
Q ss_pred HHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC---Ccc-----
Q 011856 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PMY----- 342 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~---~~~----- 342 (476)
+|.++|++||++||+||+|+.-.. ......++....+.+++|+++++.++|++++++++++.+.+.. +.+
T Consensus 159 ~i~~l~~~~~~~li~Dea~~~~~~--~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 236 (411)
T 3nnk_A 159 ELGEICRRYDALFYTDATASLGGN--PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAH 236 (411)
T ss_dssp THHHHHHHHTCEEEEECTTTBTTB--CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTC
T ss_pred HHHHHHHHcCCEEEEECCcccCCc--ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccc
Confidence 999999999999999999852111 1122233333333467799887778999999999988776421 000
Q ss_pred -------------------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 343 -------------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 343 -------------------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
.....+.|..+++++.++++.+.+ ++..++++++.+++.+.|+++. ..+.
T Consensus 237 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~ 314 (411)
T 3nnk_A 237 RDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETF 314 (411)
T ss_dssp CCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBC
T ss_pred ccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeC
Confidence 112235577888888888887654 3677888888888888888752 2111
Q ss_pred e-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHHHH
Q 011856 395 I-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTIT 465 (476)
Q Consensus 395 ~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~~~ 465 (476)
. .....+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ .+++++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~ 381 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQG-------------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLS 381 (411)
T ss_dssp SCGGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred CCcccccccEEEEECCCC-------------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHH
Confidence 1 1122356666666321 0125778888876 99998752 23577765 458999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
+|+++++++
T Consensus 382 ~l~~~l~~~ 390 (411)
T 3nnk_A 382 ALEAVLNYL 390 (411)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=215.38 Aligned_cols=328 Identities=16% Similarity=0.124 Sum_probs=214.1
Q ss_pred EcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH--hcCCC--C-------CCCHHHHHHHHHHHhhCC-CCCeEEEeC
Q 011856 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSF--G-------APCLLENVLAEMVISAVP-SIEMVRFVN 162 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~--~~~~~--~-------~~~~~~~~la~~l~~~~~-~~e~v~~~~ 162 (476)
+.++..|+|+.++ ++.+|++.+++.+++. +.... . ...+...++.++++++++ +.++++|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 3456678887654 4579999999998887 32111 0 013455788899998886 456999999
Q ss_pred CHHHHHHHHHHHHH-hcc-CCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 163 SGTEACMGVLRLAR-AFT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 163 sGseA~~~al~~ar-~~~-~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
||++|++.+++.+. .+. +++.|++.++.|++........ .|..+...+... .+ ..|+++|++
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~ 158 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NG-------------IIDLKELEA 158 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TS-------------CCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CC-------------ccCHHHHHH
Confidence 99999999999543 233 3678888888888755443322 243322211111 00 018999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhc
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKII 316 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~l 316 (476)
.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|++-.. ........+|+++ ++|.+
T Consensus 159 ~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~~~di~~~s~sK~~ 227 (423)
T 3lvm_A 159 AMRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGKL----PIDLSQLKVDLMSFSGHKIY 227 (423)
T ss_dssp HCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTSCCSEEEEESTTTT
T ss_pred hcCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhcCCC----CcChhhcCCCEEEechHHhc
Confidence 9874 6889999999999999998 99999999999999999999963211 1122233578775 56966
Q ss_pred CCCCcEEEEEecHHHHHhhcCCCC----ccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 317 GGGLPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 317 g~G~~iG~~~~~~~i~~~l~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+ +.++|++++++++++.+.+... .....+.+.++..++++.++++.+.+ +++.++++++.+++++.|+++
T Consensus 228 g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 303 (423)
T 3lvm_A 228 G-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI--- 303 (423)
T ss_dssp S-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred C-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 5 3349999999887666553110 00122345677888888888887654 456666666666666666443
Q ss_pred cCCceEeee----eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--------------------
Q 011856 391 AGHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------- 446 (476)
Q Consensus 391 ~~~~~~v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------- 446 (476)
+....... .+.++.+.+... + ..++.+.|.+ |.+.++..
T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 304 -EEVYLNGDLEHGAPNILNVSFNYV-----------E---GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp -TTEEEESCSTTBCTTEEEEEETTS-----------C---HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred -CCEEEeCCccccCCCeEEEEeCCC-----------C---HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 21111111 234556655211 1 1455666655 77766421
Q ss_pred ---cceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 ---EAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ---~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++ ..++++++++++++|+++++++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346775 4569999999999999998765
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=217.38 Aligned_cols=321 Identities=13% Similarity=0.035 Sum_probs=210.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhCC-CCCeEE-EeCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 113 IGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~~-~~e~v~-~~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
++.+++.+.+++.+++.+.....+. .+...+++++++++++ ..+.++ +++||++|++.+++.. ..++++|++.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~ 92 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP 92 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence 4444444445555555542222222 3557889999999987 445555 8999999999999853 5667889999
Q ss_pred eCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+++||+.. ...+...|..+...+..... .-|+++|++.+++. ++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~-- 154 (416)
T 3isl_A 93 IYGRFGYLLTEIAERYGANVHMLECEWGT--------------VFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP-- 154 (416)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC--
T ss_pred cCCcccHHHHHHHHhcCCeeEEEecCCCC--------------CCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC--
Confidence 99998732 22333344433222111100 01899999999742 5688888888889999988
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCC-----
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----- 339 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~----- 339 (476)
+++|.++|++||++||+||+|+.... ......+ .+|++ +++|.++++.++|++++++++++.+.+..
T Consensus 155 --l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~G 228 (416)
T 3isl_A 155 --LKAIGEACRTEDALFIVDAVATIGGC--EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERG 228 (416)
T ss_dssp --CHHHHHHHHHTTCEEEEECTTTTTTS--CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------
T ss_pred --HHHHHHHHHHcCCEEEEECCccccCC--Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhcccccccc
Confidence 89999999999999999999952111 1111222 34655 56799887778999999999988776321
Q ss_pred ------------------------------CccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH
Q 011856 340 ------------------------------PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 340 ------------------------------~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 386 (476)
........+.+..++++..++++.+.+ ++..++++++.+++.+.|++
T Consensus 229 w~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (416)
T 3isl_A 229 IATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308 (416)
T ss_dssp ------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000112234577788888888876654 46778888888888888887
Q ss_pred HhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcH
Q 011856 387 AGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSS 457 (476)
Q Consensus 387 ~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~ 457 (476)
.. ..+.... ...+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ ..++
T Consensus 309 ~g--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~ 373 (416)
T 3isl_A 309 MG--LRLFGDDSCKMPVVTCVEIPGG-------------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRK 373 (416)
T ss_dssp TT--CCBCSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSH
T ss_pred cC--CEeccCccccCCcEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcH
Confidence 42 2211110 12356666666321 1125788888887 99998753 34578765 3344
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+++++++++|+++++++
T Consensus 374 e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 374 ENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44999999999998764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=229.05 Aligned_cols=354 Identities=12% Similarity=0.032 Sum_probs=209.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhh----CC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~----~~--~~e~v~~~~sGseA~ 168 (476)
|.+|++...+++.+..++.+|++++++.+++.....+ .+..+++.++++.+.+. .+ ..+++++++||++|+
T Consensus 98 g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 98 EDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred cccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 3355544445555666778899999888888653211 22357788888888665 22 147999999999999
Q ss_pred HHHHHHH--Hhc-cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLA--RAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~a--r~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..+++.. +.+ .+++.|++.+++|+++...+ ...|..+...++.. ..+ .. -|+++|++.++.
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~---------~~---~d~~~l~~~l~~- 243 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP-ELKDYELVEVDLHSYEKND---------WE---IEPNEIEKLKDP- 243 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG-GGGGSEEEEECCCEETTTT---------SE---ECHHHHHHHSCT-
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHH-HHcCCeEEEEEecCCcccC---------CC---CCHHHHHHHhCC-
Confidence 9999842 113 34578888888887754332 22333222211110 000 00 078999998863
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~ 320 (476)
++++|+++..++++|.+.+.++ +++|.++|+ +||+++|+||+|.+| ...........+....+.+|||.+| .|+
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNA-LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHH-HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred --CCeEEEEeCCCCCCccccCHHH-HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 6777777666677888776444 999999999 589999999999988 4322211111222334558999999 799
Q ss_pred cEEEEEecHH-----HHHhhcC-----------------------------CCCccccCCCCCcHHHHHHH-HHHHHHhc
Q 011856 321 PVGAYGGRRD-----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTAG-IHTLKRLK 365 (476)
Q Consensus 321 ~iG~~~~~~~-----i~~~l~~-----------------------------~~~~~~~~t~~~~~~~~aaa-~aal~~~~ 365 (476)
|+||++++++ +++.+.+ ........+.+.+++.+.++ +.++..+.
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 9999998876 4443310 01222334456666666662 11233332
Q ss_pred -------C----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC----CcCchhhcccchHHHHHH
Q 011856 366 -------E----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARF 430 (476)
Q Consensus 366 -------~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~ 430 (476)
. ++..++++++.+++.+.|. .++....+..|.++++.+.... ...+..... +.....++
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~-~~~~~~~~ 474 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT-NNFEQVDF 474 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH-HHCCHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhh-ccCCHHHH
Confidence 1 2333444444444444442 3332223445666666653100 000000000 00011344
Q ss_pred HHHH-HHCCeEeccCC-----CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 431 YRGM-LEEGVYFAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 431 ~~~l-~~~Gv~~~~~~-----~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+ .++||++.|+. ...+|+++. ++++++++++++|.++++++
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 4444 47899998863 346789877 59999999999999998764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=216.90 Aligned_cols=331 Identities=14% Similarity=0.058 Sum_probs=201.6
Q ss_pred EEecccChhhccCCCC--cHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011856 101 YIDYVGSWGPAIIGHA--DDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~--~~sGseA~ 168 (476)
.|||..|...+..++. .+.+.+++.+.+.....++| ..++++++++++...++ .+++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5777777321222221 35688888776653222222 23667777777765543 2789987 99999999
Q ss_pred HHHHHHHHhcc-CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 169 MGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 169 ~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
..+++..+.+. +++.|++.+++|+++. ..+...|..+...+... ..++ |++++++.+++..+
T Consensus 110 ~~~~~~l~~~~~~gd~Vlv~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~~~ 174 (401)
T 7aat_A 110 RVGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTCSL--------------DFTGAMEDISKIPE 174 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTTEE--------------CHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhccCCCEEEEcCCCchhHH-HHHHHcCCeeEeeeeeccccCcc--------------CHHHHHHHHHhCCC
Confidence 99998655443 4678888898888754 33444444332221100 0111 78888888876545
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhc-cCCCCch---hhhhhhcC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDL---TTLGKIIG 317 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pDi---~t~sK~lg 317 (476)
++++|+++..+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ...... .+..+++ .++||.++
T Consensus 175 ~~~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 253 (401)
T 7aat_A 175 KSIILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TCEEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc
Confidence 6788888888888888766554 999999999999999999999888 4321 112211 1233444 47999999
Q ss_pred -CCCcEEEEEe---cHHH----HHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-------hcC-CCHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i----~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~~~~~~~~l~ 381 (476)
.|+|+||+++ +++. .+.+. ......+.+.+.+++.++...++. .+. ++..++++++.+++.
T Consensus 254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 330 (401)
T 7aat_A 254 LYGERAGAFTVICRDAEEAKRVESQLK---ILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV 330 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEEEeCCHHHHHHHHHHHH---HHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999875 6663 33333 111222334455555555544421 111 345566777777777
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDI 460 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i 460 (476)
+.|+++....++....+..|.++++.+. ...+...+.++||++.++ +|+++. +++++|
T Consensus 331 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~~~~i 389 (401)
T 7aat_A 331 SNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNV 389 (401)
T ss_dssp HHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCChhhH
Confidence 7776652111121112233444443221 123333445779999865 577654 567779
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
++++++|++++
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=212.92 Aligned_cols=312 Identities=14% Similarity=0.103 Sum_probs=211.0
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
.+|+|.+++.+++.. +++. ..+...++.++++++++. .+++++++||++|+..+++ .+.+ ++|++.++.|
T Consensus 11 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~---~~~~-d~vl~~~~~~ 84 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLA---NLDR-GPVLVLVNGA 84 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHH---TCSC-CCEEEEECSH
T ss_pred CCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHH---HhcC-CcEEEEcCCC
Confidence 578999998876654 2221 234578899999998862 4689999999999999998 4444 7899998888
Q ss_pred CCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|+.. .......|..+...+... .+ ..|+++|++.++++ ++++|+++++++++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~ 144 (353)
T 2yrr_A 85 FSQRVAEMAALHGLDPEVLDFPP-GE-------------PVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AE 144 (353)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCT-TS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HH
T ss_pred chHHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HH
Confidence 8751 122233344332221111 00 12899999999853 4678888888888999988 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc------
Q 011856 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------ 341 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~------ 341 (476)
+|.++|++||+++|+||+|. + ... .....++ +|++ +++|.++++..+|++++++++++.+......
T Consensus 145 ~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 99999999999999999994 4 321 1122233 4665 4679887655589999999998877510000
Q ss_pred ------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 342 ------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 342 ------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.....++.++.+++++.++++.+.+ ++..++++++.+++.+.|+++ ...+.......+.++++.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~- 296 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPEG- 296 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCTT-
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCCC-
Confidence 0112335577788888888887643 356778888888888888774 2211111011455556665311
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeC--CCcHHHHH-HHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVKMR 473 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~--~~t~e~i~-~~~~~l~~~~~~ 473 (476)
....++.+.|.++||.+.++. ...+|+++ .+++++++ +++++|++++++
T Consensus 297 ------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 297 ------------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ------------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ------------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 012578889999999998753 34678865 47889998 999999998764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=219.04 Aligned_cols=347 Identities=14% Similarity=0.021 Sum_probs=211.4
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
.|+.|+||.++.++.. -.+++.+++. .+.....+.+...+|++.+++++ +.+++++++||++|++.+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 3667999988754332 2466666654 33222235677788888888888 5679999999999999999854
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcCC-CCeEEEEEc-
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILE- 253 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~e- 253 (476)
.++++ |+..++||+.+...+...|..+...+...... + .+...+.++ |+++|++.+++.. +.+++|+++
T Consensus 111 --~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~-~----~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 111 --IKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHD-A----GLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp --CCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGC-T----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred --CCCCC-EeccccccchhHHHHHHcCCEEEEeccccccc-c----cccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 34444 78888888876666666666543322210000 0 000001122 8999999997532 235788887
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-cccccch--hhccCCCCchhhhh-hhcC-C
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTLG-KIIG-G 318 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~--~~~~g~~pDi~t~s-K~lg-~ 318 (476)
|+|+++|.+ .+.+++++|.++|++||++||+||+|+. + +.+.... .+..+..+|++++| |.++ .
T Consensus 183 p~n~ptG~~-~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 183 TVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SBTTTTSBC-CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred cCCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 444477864 4567799999999999999999999964 3 3332211 01223447877653 4444 4
Q ss_pred CCcEEEEEe-cHHHHHhhcCCCCccc-cCCC-CCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 319 GLPVGAYGG-RRDIMEMVAPAGPMYQ-AGTL-SGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 319 G~~iG~~~~-~~~i~~~l~~~~~~~~-~~t~-~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
| ++|++++ ++++++.+.......+ ..++ +.++..+++ +.+.++.++ +++.++.+++.+++++.|++. .+.+
T Consensus 262 ~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~--g~~~- 336 (456)
T 2ez2_A 262 N-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA--GVPI- 336 (456)
T ss_dssp S-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--TCCB-
T ss_pred C-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--CCcc-
Confidence 5 6899988 6888776642111101 1112 224334444 555555442 456777777888888888763 2222
Q ss_pred eEeeeeceeEEEEEec--CCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-----------------CcceEEeCC
Q 011856 395 ICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSLA 454 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-----------------~~~~~~~~~ 454 (476)
..+..|.++++.+.. +... .+......+.+.| .++||.+.+.+ ...+|+++.
T Consensus 337 -~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 337 -VEPVGGHAVFLDARRFCEHLT-------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp -CSSCCSSEEEEEHHHHTTTSC-------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred -ccCCCceEEEEEhHHhcCCCC-------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 123346666766531 1100 0000134556677 57899864421 245677655
Q ss_pred ---CcHHHHHHHHHHHHHHHHHh
Q 011856 455 ---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ---~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|++++++.
T Consensus 409 ~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 409 RRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 79999999999999998753
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=218.97 Aligned_cols=335 Identities=13% Similarity=0.027 Sum_probs=223.8
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----C--CC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----T--SF-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~--~~-~--~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
+..|+| + +.+|+.++.+.+++.++++.. . ++ + ...+...++.++++++++ .+++|+|++|++++
T Consensus 67 ~~iyld---~---~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFL---G---NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECB---T---TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEec---C---CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 445665 2 456877888888887776541 1 11 1 122445678888888876 46799999999999
Q ss_pred HHHHHHHHHhc-cCCceEEEEeCCCCCCchhHH---hhcCCCCccC--C-CCCCCCCCCCCCCceeeccCCCHHHHHHHH
Q 011856 168 CMGVLRLARAF-TGRERIIKFEGCYHGHADPFL---VKAGSGVATL--G-LPDSPGVPKGATYETLTAPFNDVSALENLF 240 (476)
Q Consensus 168 ~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 240 (476)
+..+++..... ..+++|++.++.||+...... ...|..+... . .|..... .-|+++|++.+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~------------~~d~~~l~~~i 208 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEE------------TLRIEDILEVI 208 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCS------------SCCHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCC------------ccCHHHHHHHH
Confidence 99999853211 235669998999987554332 2334332100 0 0110000 01799999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC
Q 011856 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
+++.+++++|+++++++++|.+.+ +++|.++|++||+++|+|++|+.-.. ......++ .|++ +++|.+++
T Consensus 209 ~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~g~~--~~~~~~~~--~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 209 EKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAVGNV--ELYLHDWG--VDFACWCSYKYLNA 280 (465)
T ss_dssp HHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CCEEEECSSSTTCC
T ss_pred HhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhcCCc--CCchhhcC--CCEEEECccccccc
Confidence 754347899999999999999998 99999999999999999999952100 11112233 4555 67799964
Q ss_pred C-CcEEEEEecHHHHHhhcCCCCccccC----------------------CCCCcHHHHHHHHHHHHHhcC---CCHHHH
Q 011856 319 G-LPVGAYGGRRDIMEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEY 372 (476)
Q Consensus 319 G-~~iG~~~~~~~i~~~l~~~~~~~~~~----------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~ 372 (476)
| .++|++++++++++.+.+....+.++ ..+.+++++++..++++.+.+ +++.++
T Consensus 281 gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~ 360 (465)
T 3e9k_A 281 GAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK 360 (465)
T ss_dssp CTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4 46899999999877665321110000 115677888888888887754 567788
Q ss_pred HHHHHHHHHHHHHHHhhh-------cCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEe
Q 011856 373 LNKITGELTQGIIDAGKK-------AGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~-------~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 441 (476)
.+++.+++.+.|+++... .++. .+....|.++++.+... ..++.+.|.++||++
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~---------------~~~l~~~L~~~Gi~v 425 (465)
T 3e9k_A 361 SVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP---------------NKDVFQELEKRGVVC 425 (465)
T ss_dssp HHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT---------------TCCHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC---------------HHHHHHHHHHCCEEE
Confidence 888888888888875211 1111 11223478888877411 135778899999998
Q ss_pred ccCCCcceEEe---CCCcHHHHHHHHHHHHHHHHH
Q 011856 442 APSQFEAGFTS---LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 442 ~~~~~~~~~~~---~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.......+|++ +.+|++|+++++++|++++++
T Consensus 426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 86655678874 667999999999999999864
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=206.80 Aligned_cols=330 Identities=17% Similarity=0.116 Sum_probs=208.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.++|||.++. +.. .++++.+++.+.... ...+++.+...+|.+++++++ +.+.+++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 3578988884 333 678888888654321 112335667778889998888 5678999999999999998742 3
Q ss_pred cCCceEEEEeCCCCCCch--hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEc
Q 011856 179 TGRERIIKFEGCYHGHAD--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 253 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~e 253 (476)
..+++|++.+++|...+. ......|..+... .. ..+ .-|+++|++.+++. .+++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNG-------------AMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETT-------------EECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCC-------------ccCHHHHHHHhccccccccCceEEEEe
Confidence 345677776665533222 1223334322211 00 000 01899999998742 1258889888
Q ss_pred ccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-cccccchhhccCCCCc--hhhhhhhcCCCCcEEE-EE
Q 011856 254 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YG 326 (476)
Q Consensus 254 p~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~~pD--i~t~sK~lg~G~~iG~-~~ 326 (476)
+++|++ |.+.+ .+.+++|.++|++||++||+||+|.- + ..+.. ...+....| ++++||++++ ++|+ ++
T Consensus 140 ~~~npt~G~~~~-~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~--~~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVP-LENIKEICTIAKEHGINVHIDGARIFNASIASGVP--VKEYAGYADSVMFCLSKGLCA--PVGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCC-HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC--SSCEEEE
T ss_pred ccccccCCccCc-HHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC--hHHhcccccEEEEecccccCC--CceEEEE
Confidence 888877 77665 44599999999999999999998741 1 11110 111111123 3469999975 4674 56
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
+++++++.+..... ...++...+.+.++++..+|+... +. .++..++.+++.+.|+++. ..+. ..+..+.++++
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~-~~~~~~~~~~~ 288 (347)
T 1jg8_A 215 GDRDFIERARKARK-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVN-PEDVKTNMVIL 288 (347)
T ss_dssp ECHHHHHHHHHHHH-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCC-GGGCCSSEEEE
T ss_pred cCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceec-cCCCcceEEEE
Confidence 78888776542111 123344456677777777776532 23 4445567788888887752 2111 11345677777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.... ....++.+.|.++||.+.+.+...+|++ ..++++|+++++++|+++++++
T Consensus 289 ~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 289 RTDNLK------------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp ECTTSS------------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc------------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 763210 0125788888999999998765668886 4569999999999999998764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=212.02 Aligned_cols=329 Identities=12% Similarity=0.065 Sum_probs=215.9
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVL 172 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al 172 (476)
.+|+.|+|..+. .+ .+|++.+++.+++.. .+. ++.+...++.++++++++ ..+ ++++++||++|++.++
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 356666664432 22 589999988776543 121 133567789999998886 344 7999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+.+ ..++++|++.+++||+.... .....|..+...+... .+ ..|+++|++.+++. ++++|+
T Consensus 88 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~--~~~~v~ 149 (393)
T 2huf_A 88 CNL--LEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQ-------------SLSLDEIRDALLIH--KPSVLF 149 (393)
T ss_dssp HHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEE
T ss_pred HHH--hCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CC-------------CCCHHHHHHHHhcc--CCcEEE
Confidence 964 34567899999999884211 1122343332221111 00 13899999999742 467788
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEec
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 328 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~ 328 (476)
++++++++|.+.+ +++|.++|++||++||+||+|+ + .. ...... ..+|++ +++|.++++..+|+++++
T Consensus 150 ~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~~ 220 (393)
T 2huf_A 150 LTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSFS 220 (393)
T ss_dssp EESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEEC
T ss_pred EEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEEC
Confidence 8888888999988 8899999999999999999985 3 11 111112 235766 567987754445999999
Q ss_pred HHHHHhhcCCC----Ccc---------------ccCC-CCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011856 329 RDIMEMVAPAG----PMY---------------QAGT-LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 329 ~~i~~~l~~~~----~~~---------------~~~t-~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (476)
+++++.+.... +.. ...+ .+.+..+++++.++++.+.+ ++..++++++.+++.+.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 300 (393)
T 2huf_A 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQ 300 (393)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998876421 111 0111 23466666777778877643 4567788888888888888
Q ss_pred HHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC-C--Cc
Q 011856 386 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HS 456 (476)
Q Consensus 386 ~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~-~--~t 456 (476)
++ ...+..... ..+.++++.+... ....++.+.|+++ ||++.++. ...+|+++ . .+
T Consensus 301 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~ 365 (393)
T 2huf_A 301 DA--GFELYADPKDRLSTVTTIKVPQG-------------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNAT 365 (393)
T ss_dssp HT--TCCBSSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCS
T ss_pred Hc--CCeeccCccccCCcEEEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCC
Confidence 75 222211110 1244666665311 0125678888765 99998763 34678876 4 57
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 366 ~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 366 TERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=212.71 Aligned_cols=333 Identities=11% Similarity=0.021 Sum_probs=202.8
Q ss_pred EEEecccChhhccCCC--CcHHHHHHHHHHH-HhcCC--CC---CCCHHHHHHHHHHHhhCC---CCCe--EEEeCCHHH
Q 011856 100 EYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKGTS--FG---APCLLENVLAEMVISAVP---SIEM--VRFVNSGTE 166 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l-~~~~~--~~---~~~~~~~~la~~l~~~~~---~~e~--v~~~~sGse 166 (476)
..|||..|...+.-|. .++.|.+|.. .+ +.... |. +..++++++++++..... ..++ +++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 3577776642233332 4688888876 43 33222 22 235677777777765442 2343 699999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..++++...+.+ +.|++.+++|.++.. .+...|..+...++.. ..++ |+++|++.+++.+
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~ 172 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVN-MIESRGFNLKYINFFDYNLIDI--------------NYDLFLNDLRNIP 172 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHHH-HHHTTTCEEEEECCEETTTTEE--------------CHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHHH-HHHHcCCeEEEEeccccccCCc--------------CHHHHHHHHHhCC
Confidence 99999986444335 899999999987543 3344444333322200 0111 7999999997532
Q ss_pred CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhc-cCCCCchh---hhhhh
Q 011856 245 GEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDLT---TLGKI 315 (476)
Q Consensus 245 ~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pDi~---t~sK~ 315 (476)
..+++++++. +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ...... ....+.++ +|||.
T Consensus 173 -~~~~i~l~~~~~NPTG~~~s~~~-~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 173 -NGSSVILQISCYNPCSVNIEEKY-FDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp -SSCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred -CCeEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 4566777665 677888776555 999999999999999999999988 4321 111111 12223333 79999
Q ss_pred cC-CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHH
Q 011856 316 IG-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 316 lg-~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~ 382 (476)
++ .|||+||+++ ++++++.+... .........+.+.+++.++.++|+.- +. ..++++++++++.+.+
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~ 330 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFN 330 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 8999999853 66666544210 00111122234567777777666521 11 2334456666667777
Q ss_pred HHH----HHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcH
Q 011856 383 GII----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSS 457 (476)
Q Consensus 383 ~L~----~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~ 457 (476)
.|+ +++....+....+..|.++++.+.. ++++.|.++||++.|++ |++++ .++
T Consensus 331 ~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~ 388 (405)
T 3k7y_A 331 KLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITK 388 (405)
T ss_dssp HHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCT
T ss_pred HHHhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCH
Confidence 766 4321000111123344444433211 22345578899999964 88875 589
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVKMR 473 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~ 473 (476)
++|++++++|++++++
T Consensus 389 ~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 389 NNVDYIADKICLSLSQ 404 (405)
T ss_dssp THHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=221.12 Aligned_cols=345 Identities=14% Similarity=0.046 Sum_probs=204.3
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
|+.||||.+++++ |+|.+++.+++..+...+.+.+...+|++++++++ +.++++|++||++|++.|++.++.
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~~ 111 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHhc
Confidence 5679999877532 88999998888665433334566778888998888 568999999999999999998765
Q ss_pred cc----C--C-ceEEEEeCCCCCCchhHHh-hcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCC-C
Q 011856 178 FT----G--R-ERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-G 245 (476)
Q Consensus 178 ~~----~--~-~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~ 245 (476)
.+ + + +.|+.. .||+.+..... ..+..+.....+ ..++. ....++ .|+++|++.+++++ +
T Consensus 112 ~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~Le~~i~~~~~~ 182 (467)
T 2oqx_A 112 KREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDT-----GVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_dssp HHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCT-----TSCCTTTTCBCHHHHHHHHHHHCGG
T ss_pred cccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccC-----CCCCCccCCcCHHHHHHHHHhcCCC
Confidence 42 3 2 556654 57865433322 222221110000 00000 000111 28999999997532 3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-cccc---cchhhccCCCCch--
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAY---GGAQEYFGVTPDL-- 309 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~---~~~~~~~g~~pDi-- 309 (476)
++++|+++++++++|...++.+++++|+++|++||++||+|++|.. . ..|. .+..+.+ ..+|+
T Consensus 183 ~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~ 261 (467)
T 2oqx_A 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLA 261 (467)
T ss_dssp GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEE
T ss_pred ceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEE
Confidence 6889999998887644556677899999999999999999966532 1 1111 1110000 11343
Q ss_pred hhhhhhcCCCCcE-EEEEecHH-HHHhhcCCCCc---c-ccCCCCCcHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPV-GAYGGRRD-IMEMVAPAGPM---Y-QAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 310 ~t~sK~lg~G~~i-G~~~~~~~-i~~~l~~~~~~---~-~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
.+++|.++. |+ |+++++++ +++.+...... . ...+++.......+++ ..++...+++..++..++.+++.+
T Consensus 262 ~s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~ 339 (467)
T 2oqx_A 262 MSAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339 (467)
T ss_dssp EESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHH
Confidence 478898863 54 56677766 44333210011 0 1112232222222222 222322222456677788889999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEec--CCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC--------------
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-------------- 445 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-------------- 445 (476)
.|+++ .+.+ . +..|.++++.+.. .... .+.....++.+.| .++||.+.+++
T Consensus 340 ~L~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~ 407 (467)
T 2oqx_A 340 GLEEI--GVVC--Q-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQL 407 (467)
T ss_dssp HHHHT--TCCE--E-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBC
T ss_pred HHHHC--CCee--e-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceecccccccccccccccccc
Confidence 98875 2332 2 3456667776632 1100 0000135677888 78999998743
Q ss_pred ---CcceEEeCC---CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ---FEAGFTSLA---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ---~~~~~~~~~---~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. +|+++|++++++|+++++++
T Consensus 408 ~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp CCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred cCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 145777655 89999999999999998653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=209.03 Aligned_cols=320 Identities=13% Similarity=0.080 Sum_probs=211.1
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
+.||||..+... ++ |++.+++.++++++. + .+.+...++.+.+++++ +.+.+++++||++|++.+++.++ .
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-y-~~~~~~~~l~~~la~~~-~~~~~v~~~~Gt~a~~~~l~~~~-~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-Y-LLGPELEGFEAEFAAYC-ETDHAVGVNSGMDALQLALRGLG-I 100 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHT-TSSEEEEESCHHHHHHHHHHHTT-C
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-C-CCchhHHHHHHHHHHHH-CCCeEEEecCHHHHHHHHHHHhC-C
Confidence 678999887542 32 999999999987642 2 24577788999999998 45588999999999999999532 3
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
.+++.|++.+++|++.. ..+...|..+...+.....+ ..|+++|++.+++ ++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAITP---RTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCCT---TEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcCC---CCeEEEEe---CC
Confidence 45678999999998843 34444454333222110000 1289999999864 57777743 34
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--cccccchhhccCCCCchhhh----hhhcCC-CCcEEEEEec-HH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 330 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pDi~t~----sK~lg~-G~~iG~~~~~-~~ 330 (476)
+|.+.+ +++|.++|++||++||+||+|+.+ ..+. .++..+|++++ ||.+++ | ++|+++++ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 677777 999999999999999999999633 2221 23333687765 599996 8 99999886 78
Q ss_pred HHHhhcC---CCCc------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eee
Q 011856 331 IMEMVAP---AGPM------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYI 400 (476)
Q Consensus 331 i~~~l~~---~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~ 400 (476)
+++.+.. .+.. ..+.++..+++.++++.++++.++ ++.++.+++.+++.+.|.++. ...+.... .+.
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~ 307 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIGLPVTAPDTD 307 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCBCCCCCTTEE
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-CccccCCCCCCc
Confidence 8776542 1100 012234568899988888887553 355666666666666665431 11111000 111
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe-
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS- 452 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~- 452 (476)
+.++.+.+... ...++.+.|.++||.+.+... ..+|++
T Consensus 308 ~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~ 373 (399)
T 2oga_A 308 PVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI 373 (399)
T ss_dssp CCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC
T ss_pred ceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC
Confidence 22212322211 125788889999999886431 236764
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 -LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 -~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++|+++++++|+++++++
T Consensus 374 ~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 374 GPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp STTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=203.51 Aligned_cols=321 Identities=16% Similarity=0.127 Sum_probs=206.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~a 171 (476)
|+|+.++ +..+|.+.+++.+++.+...+. + ..+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 5666544 3468999999999997632111 1 13455688999999886 457899999999999999
Q ss_pred HHHHHh--ccCCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 172 LRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 172 l~~ar~--~~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.... ..+++.|++.++.|++........ .|..+...+... .+ .-|+++|++.+++ ++
T Consensus 77 ~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4hvk_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CC-------------CcCHHHHHHHhcc---Cc
Confidence 995421 145677888777777654433322 233222211110 00 0189999999864 67
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~ 325 (476)
++|+++++++++|.+.+ +++|.++|++||+ ||+||+|+.-.. .......+ +|++ +++|.+| +..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g~g~~ 209 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATASVGQI--EVDVEKIG--ADMLTISSNDIYG-PKGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTTBTTB--CCCHHHHT--CSEEEEESGGGTS-CTTCEEE
T ss_pred eEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHhcCCC--CCCchhcC--CCEEEEeHHHhcC-CCceEEE
Confidence 89999999999999988 9999999999999 999999952110 11122223 4555 6779765 2248888
Q ss_pred EecHHHHHhhcCCC----CccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-
Q 011856 326 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG- 398 (476)
Q Consensus 326 ~~~~~i~~~l~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~- 398 (476)
+++++. .+.+.. ........+.++..+++..++++.+.+ ++..++++++.+++.+.|+++ +......
T Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~ 283 (382)
T 4hvk_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSC
T ss_pred EEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCC
Confidence 777664 222110 001112344577888888888876543 456666667777777666543 2111111
Q ss_pred ---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEEe
Q 011856 399 ---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (476)
Q Consensus 399 ---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~~ 452 (476)
..+.++.+.+... ...++.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 349 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTC--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEE
T ss_pred ccccCCCEEEEEECCC--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEE
Confidence 1133555555211 12567888999999998753 2456776
Q ss_pred C--CCcHHHHHHHHHHHHHHHHHh
Q 011856 453 L--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ .+|++|+++++++|+++++++
T Consensus 350 ~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 350 LGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 468999999999999998764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=213.21 Aligned_cols=333 Identities=13% Similarity=0.103 Sum_probs=207.5
Q ss_pred CcHHHHHHHHHHHHhc---CCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhc-cCCce
Q 011856 116 ADDQVLAALGETMKKG---TSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~---~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~-~~~~~ 183 (476)
.++++++++.+.+.+. ....| ..+++.++++++.+..+ .+++|++++||++|+..+++.. . ..++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~~~gd~ 184 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL--IRNEKDG 184 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH--CCSTTEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCE
Confidence 4677888888888762 22222 23677778887765532 5789999999999999999952 2 35678
Q ss_pred EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCC
Q 011856 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G 260 (476)
|++.+++|+++... +...|..+..+++....+. ..|+++|++.+++. +.++++|+++..+|++|
T Consensus 185 Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG 251 (500)
T 3tcm_A 185 ILVPIPQYPLYSAS-IALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251 (500)
T ss_dssp EEEEESCCTHHHHH-HHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTC
T ss_pred EEEeCCCcHhHHHH-HHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCc
Confidence 88888888875443 3444443332221111100 12899999999751 22466666555566788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-c-cchh----hccCC-CC--c-hh--hhhhhc-C-CCCcEEEE
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-GGAQ----EYFGV-TP--D-LT--TLGKII-G-GGLPVGAY 325 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~~~~----~~~g~-~p--D-i~--t~sK~l-g-~G~~iG~~ 325 (476)
.+.+.++ +++|.++|++||+++|+||+|.++ ..+ . .... ..++. .. + ++ +|||++ | .|+|+||+
T Consensus 252 ~~~s~~~-l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 330 (500)
T 3tcm_A 252 QVLAEEN-QYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYF 330 (500)
T ss_dssp CCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEE
T ss_pred ccCCHHH-HHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEE
Confidence 8776555 999999999999999999999877 422 1 1111 12221 12 2 33 799999 6 69999999
Q ss_pred Ee---cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH-----------HhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 326 GG---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 326 ~~---~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
++ ++++++.+.. . ...+++.++++++++..+++ ..+. +.+.++++++.+++.+.|+++
T Consensus 331 ~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 331 EITGFSAPVREQIYK---I-ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEESCCTTHHHHHHH---H-HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEeCCCHHHHHHHHH---H-HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 87 8889888763 1 12345678888888877774 1121 445556666666776666653
Q ss_pred cCCceEeeeece-eEEEEEecCCCcCchhh-cccchHHHHHH-HHHHHHCCeEeccCC-------CcceEEeCCCcHHHH
Q 011856 391 AGHAICGGYISG-MFGFFFTEGPVYNFEDA-KKSETTKFARF-YRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 391 ~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~Gv~~~~~~-------~~~~~~~~~~t~e~i 460 (476)
+.+......|. ++++.+..+. ...... ....... ..+ .+.|.++||++.|+. ...+|+++.++++++
T Consensus 404 -~g~~~~~~~g~~~~~~~~~lp~-~~~~~~~~~g~~~~-~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i 480 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQICLPQ-KAIEAAKAANKAPD-AFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKI 480 (500)
T ss_dssp -TTEECCCCCBTTEECCEECCCH-HHHHHHHHHTSCHH-HHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTH
T ss_pred -CCcEEecCCeEEEEeeeecCch-hhHHHHHhcCCCcH-HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHH
Confidence 22222333444 4443332110 000000 0000011 223 355567899999763 224789888999999
Q ss_pred HHHHHHHHHHHHHh
Q 011856 461 QHTITAAEKVKMRF 474 (476)
Q Consensus 461 ~~~~~~l~~~~~~~ 474 (476)
++++++|+++++++
T Consensus 481 ~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 481 PAVISRFTVFHEAF 494 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=207.32 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=192.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~ 212 (476)
++.+...+++++++++++ .+++++++||++|+..+++.+ ..+++.|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER-GEAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 367888999999999884 458888899999999999953 3456788888888887544331 22222
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3556667799999999863 6899999999999999998 999999999999999999999643
Q ss_pred cccccchhhccCCCCchhhhhhhcC-CCCcE-EEEEecHHHHH-hhcCCCCccccC-CCCCcHHHHHHHHHHHHHhcCCC
Q 011856 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~i-G~~~~~~~i~~-~l~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
..+.. ..++....+.+++|.++ +|+|+ |++++++++++ .+.. ..... +.+.+++.++++.++|+.+ +.
T Consensus 192 ~~~~~---~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQP---LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV---GLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCG---GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT---HHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCc---hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 11111 12333223358999998 48898 99999999887 5552 22333 4567899999988888643 33
Q ss_pred HHHHHHHHHHHHHHHHHHHh----------hhcCCce----EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 369 TYEYLNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----------~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
..++..++.+.+.+.|++.. .+++... ..++.|.++++++.+. ......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG------------LEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC------------HHHHHHHHHhC
Confidence 44556666666666666531 0011000 0124688888887421 12233444444
Q ss_pred HHCCeEeccCC---------------------------CcceEEe--CCCcHHHHHHHHHHHHH
Q 011856 435 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 435 ~~~Gv~~~~~~---------------------------~~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
...|+.+.++. ...+|++ ..+++++++.++++|++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 44566655441 2356665 55678887777777764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=206.94 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=201.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC----CC-CCHHHHH----HHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF----GA-PCLLENV----LAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~----~~-~~~~~~~----la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
.++|+.++ +++ +|++.+|+.+++.+.. .+ .+ ......+ ++++++++++.....++++||++|+
T Consensus 25 ~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 46777655 555 8999999999885321 11 01 1122233 4468888874333445567889999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+.+++.+ ..+++.|++.++.|++..... +...|.+.....++..+. -...|+++|++.+++. +
T Consensus 99 ~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~i~~~--~ 163 (405)
T 2vi8_A 99 MAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-----------THVIDYDDVREKARLH--R 163 (405)
T ss_dssp HHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTT-----------TCSBCHHHHHHHHHHH--C
T ss_pred HHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEecccccc-----------cCCcCHHHHHHHHHhc--C
Confidence 9999964 445677888776655432211 111121000000010000 0012899999999742 3
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchh--hhhhhcCCCCcEE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVG 323 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~--t~sK~lg~G~~iG 323 (476)
+++|+++|.+ .|...+ +++|+++|++||++||+||+|+....+... ...++ .+|++ +++|.++++.. |
T Consensus 164 ~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~g-G 234 (405)
T 2vi8_A 164 PKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPRG-G 234 (405)
T ss_dssp CSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCSTTTCSEEEEESSSTTCCCSC-E
T ss_pred CeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCc--CCCccccCCEEEEeccccCCCCCC-e
Confidence 5677775533 243334 899999999999999999999721221110 11111 46776 79999985433 9
Q ss_pred EEEecHHHHHhhcCCCCccccCCCC-CcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-e
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-G 398 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~ 398 (476)
++++++++++.+.+. ....+++ .++..++++.++++.+.+ +++.++++++.+++.+.|+++ ++.... .
T Consensus 235 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 307 (405)
T 2vi8_A 235 MILCQEQFAKQIDKA---IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTLVSGG 307 (405)
T ss_dssp EEEECHHHHHHHHHH---HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGS
T ss_pred EEEEcHHHHHHHHhh---hcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeEecCC
Confidence 999999998877531 1112233 366777777788887654 567788888888888888775 221111 1
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeCC------CcHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSDDIQH 462 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~~------~t~e~i~~ 462 (476)
+.+.++++.+..... ....+.+.|.++||.+.++. ...+|+++. ++++++++
T Consensus 308 ~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 308 TDNHLLLVDLRPQQL------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp CSSSEEEEECGGGTC------------CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CCceEEEEEccCCCC------------CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 357777887742100 12467788889999998752 234677544 68999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
++++|+++++++
T Consensus 376 ~~~~l~~~~~~~ 387 (405)
T 2vi8_A 376 IAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=203.17 Aligned_cols=310 Identities=17% Similarity=0.073 Sum_probs=207.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (476)
.+|++.+++.+++.. +.++ ..+...++.++++++++ ..+++++++||++|++.+++.. ..++++|++.+++|++
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~ 87 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 87 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchh
Confidence 579999998876642 1211 12445788888888886 3468999999999999999964 3456789999988888
Q ss_pred Cch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 194 HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 194 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
... ..+...|..+...+... .+ ..|+++|++ +++++|+++++++++|.+.+ +++|
T Consensus 88 ~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i 143 (352)
T 1iug_A 88 ERFYEIALEAGLVVERLDYPY-GD-------------TPRPEDVAK------EGYAGLLLVHSETSTGALAD----LPAL 143 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCT-TC-------------CCCTTTSCC------SSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHhc------cCCcEEEEEEecCCcceecC----HHHH
Confidence 541 11122344332221111 00 014555544 25678888888888999988 9999
Q ss_pred HHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCC------C--
Q 011856 273 RRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA------G-- 339 (476)
Q Consensus 273 ~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~------~-- 339 (476)
.++|++| |++||+||+|+ + .. ......+ .+|++ +++|.++++.++|++++++++++.+... .
T Consensus 144 ~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE 218 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred HHHHHhhCCCCEEEEECCcc-ccCc--ceecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHH
Confidence 9999999 99999999995 3 11 1111222 35665 5779877655689999999987652210 0
Q ss_pred --Cc-cccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCC
Q 011856 340 --PM-YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (476)
Q Consensus 340 --~~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (476)
.. .....++.|+.+++++.++++.+.+ ++..++++++.+++.+.|+++ ++....+ ..+.++++.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 292 (352)
T 1iug_A 219 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPEG-- 292 (352)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCTT--
T ss_pred HhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCCC--
Confidence 00 0112345678888888888887654 356677777888888888764 2211111 2567777776421
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHHHHHHHHHhh
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~~ 475 (476)
....++.+.|.++||.+.++. ...+|+++. ++++++++++++|++++++++
T Consensus 293 -----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 293 -----------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp -----------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 012568888999999998763 346788654 589999999999999988753
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=209.76 Aligned_cols=319 Identities=14% Similarity=0.070 Sum_probs=201.9
Q ss_pred CcHHHHHHHHHHHHhcC---CCC---C--CCHHHHHHHHHHHhhCCCC---CeE--EEeCCHHHHHHHHHHHHHhcc---
Q 011856 116 ADDQVLAALGETMKKGT---SFG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFT--- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~---~~~---~--~~~~~~~la~~l~~~~~~~---e~v--~~~~sGseA~~~al~~ar~~~--- 179 (476)
.++.+.+++.+++.... .+. + ..+++.+++++++++++.. +++ +|++||++|++.+++.++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 56777777777765421 111 1 1356677888889988632 677 999999999999999876543
Q ss_pred ---CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 180 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 180 ---~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
.++.|++..++|++ +...+...|..+...+...... -|+++|++.+++ ++++|++++.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~-~~~~~~~~G~~v~~v~~~~~~~--------------~d~~~Le~~i~~---~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAA-FDKAAQYFGIKLVRTPLDADYR--------------ADVAAMREAITP---NTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTH-HHHHHHHHTCEEEEECBCTTSC--------------BCHHHHHHHCCT---TEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchH-HHHHHHHcCCeeEEeeeCCCCC--------------CCHHHHHHHhcc---CCEEEEEeCCC
Confidence 12677777777766 4444444454333222111000 189999999974 68889999988
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-----ccc---cchhhccCCCCchhhhhhhcCCCCcEEEEEe
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-----~g~---~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~ 327 (476)
+++|.+.+ +++|+++|++||++||+||+|++| . .|. .+.....|+...+.+++|.+.+|+++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88999988 999999999999999999999876 3 121 2222334443333467799888899999988
Q ss_pred cHHHHHhhcCC-------C----CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 328 RRDIMEMVAPA-------G----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 328 ~~~i~~~l~~~-------~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
+++.+...... + ....+++...+.+++.+++..+....-+++.+++.++.+++.+.|+++. ++ ..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~-~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIP---SL-KI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TC-EE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCC---Ce-EE
Confidence 87765443210 0 0001112112233444444433322125677788888888888887631 11 11
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEe---CCCcHHHHHHHHHHHHHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS---LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~---~~~t~e~i~~~~~~l~~~~~ 472 (476)
+.....++++..... ...++.+.|+++||++.... .+.++++ ...+++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDEL--------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSSS--------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCCC--------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 112233555543110 12578889999999884433 2345664 33467999999999999987
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 468 ~~ 469 (514)
T 3mad_A 468 QV 469 (514)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=207.89 Aligned_cols=315 Identities=13% Similarity=0.117 Sum_probs=211.0
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.++++.+++.+++.. .+. ++.....++.+.++++++ ..+ ++++++||++|++.+++.. ..++++|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 468888887665432 121 122446789999998886 455 7999999999999999963 445678999999998
Q ss_pred CCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+... ......|..+...+... .+ ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 8431 13333444332221111 00 13899999999752 4677888888888899988 889
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHHHHHhhcCCC----Ccc--
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 342 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~l~~~~----~~~-- 342 (476)
|.++|++||++||+||+|. + .. ..... ...+|+++ ++|.++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999996 3 11 11111 22357665 5599987667899999999888774311 100
Q ss_pred --------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee--eecee
Q 011856 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 403 (476)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~ 403 (476)
....++.+..++.++.++|+.+.+ ++..++++++.+++.+.|+++. ..+..... ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--LDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--CeeccCCccccCCce
Confidence 112234577788888888887632 4567788888888888888762 22211110 12346
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHHHHHHHHHHHHh
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.+... ....++.+.|+++ ||.+.++. ...+|+++ .++++++++++++|+++++++
T Consensus 318 ~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 318 TGIMIPKG-------------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp EEEECCTT-------------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 66665311 0125678888875 99998753 34678876 358999999999999998764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=211.29 Aligned_cols=332 Identities=10% Similarity=0.036 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHHHhc---C--CCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHHHhccCC--
Q 011856 116 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR-- 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~---~--~~~---~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~al~~ar~~~~~-- 181 (476)
.+..+.+++.+.+.+. . .|+ +..+++.++++++.+..+ .+++|++++|+++|+..++++ +..+
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~---l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKI---LVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHH---HCCCCG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHH---HcCCCC
Confidence 3667777778777752 1 122 234778888988887652 578999999999999999994 3332
Q ss_pred ---ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC--CeEEEEEcccC
Q 011856 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVV 256 (476)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~a~vi~ep~~ 256 (476)
+.|++..+.|..+.. .+...|..+..++.....++ .-|+++|++.+++... ++++|+++..+
T Consensus 179 ~~~d~Vlv~~p~y~~~~~-~~~~~g~~~v~~~~~~~~~~------------~~d~~~le~~l~~~~~~~~~k~i~l~np~ 245 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSA-VISELDAIQVNYYLDEENCW------------ALNVNELRRAVQEAKDHCDPKVLCIINPG 245 (498)
T ss_dssp GGSEEEEEEESCCTHHHH-HHHHTTCEEEEEECBGGGTT------------BCCHHHHHHHHHHHTTTSEEEEEEEESSC
T ss_pred CCCCEEEEeCCCchhHHH-HHHHcCCEEEEeeccccccC------------CCCHHHHHHHHHhhhccCCCeEEEEECCC
Confidence 478888888876543 33344443222111100000 0189999999975321 36666666556
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc--cchhhcc--CCC------Cch---hhhhhhc-C-CCC
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYF--GVT------PDL---TTLGKII-G-GGL 320 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~~~~--g~~------pDi---~t~sK~l-g-~G~ 320 (476)
|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+. ....... +.. .++ .+|||++ | +|+
T Consensus 246 NPTG~v~s~~~-l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKC-IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHH-HHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 67888776555 999999999999999999999877 4321 1111110 011 112 2799999 5 799
Q ss_pred cEEEEE---ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH-----------HhcC-CCHHHHHHHHHHHHHHHHH
Q 011856 321 PVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 321 ~iG~~~---~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~ 385 (476)
|+||++ .++++++.+.. . .....+.+.+++.++.++++ .+++ +...++++++.+++.+.|+
T Consensus 325 R~G~~~~~~~~~~l~~~l~~---~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQLVK---L-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp CCEEEEEESCCHHHHHHHHH---H-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCHHHHHHHHH---H-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 68999888763 1 12344667788877666553 1111 2344555666666666665
Q ss_pred HHhhhcCCceEeeeece-eEEEEEecCCCcCchhhc-ccchHHHHH-HHHHHHHCCeEeccCC-------CcceEEeCCC
Q 011856 386 DAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAK-KSETTKFAR-FYRGMLEEGVYFAPSQ-------FEAGFTSLAH 455 (476)
Q Consensus 386 ~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~Gv~~~~~~-------~~~~~~~~~~ 455 (476)
++ +.+......|. ++++.+..+. ..+.... ..... ... +.+.|.++||++.|+. ...+|+++.+
T Consensus 401 ~~----~g~~~~~p~gg~~~~~~l~~p~-~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~ 474 (498)
T 3ihj_A 401 QV----PGIHCNPLQGAMYAFPRIFIPA-KAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP 474 (498)
T ss_dssp TS----TTEECCCCCBSSEECCEECCCH-HHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS
T ss_pred cC----CCcEecCCCeEEEEEEeccCch-hhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC
Confidence 43 22222334444 4444443110 0000000 00000 112 3445567899998752 2367899889
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011856 456 SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~ 474 (476)
+++++++++++|.+++++.
T Consensus 475 ~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 475 PVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=198.02 Aligned_cols=320 Identities=16% Similarity=0.133 Sum_probs=209.1
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC-CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~-~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~a 171 (476)
|+|+.++ ++.+|.|.+++.+++.+.. ... ++ .+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6676655 4679999999999987621 111 21 2456788899998886 456999999999999999
Q ss_pred HHHHHh-c-cCCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.... + .+++.|++.+++|++........ .|..+...+... .+ ..|+++|++.+++ ++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CC-------------ccCHHHHHHHhcC---CC
Confidence 996541 1 35678888888887754443322 233222211110 00 0279999999864 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGA 324 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~ 324 (476)
++|+++++++++|.+.+ +++|.++|++||++ |+||+|. + .. ......+ .+|++ +++|.+|. ..+|+
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~g~G~ 208 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-KGVGA 208 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-SSCEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-CceEE
Confidence 88999999899999998 99999999999999 9999996 3 11 1111222 35665 57897652 13799
Q ss_pred EEecHHHHHhhcCCCC----ccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 325 YGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
++++++. .+.+... .......+.++..+.++.++++.+.+ ++..++++++.+++.+.|+++ +......
T Consensus 209 ~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~ 282 (382)
T 4eb5_A 209 LWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNG 282 (382)
T ss_dssp EEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECS
T ss_pred EEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CCeEEeC
Confidence 9888763 1221100 01122334567777777788876654 445566666667776666543 2111111
Q ss_pred e----eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEE
Q 011856 399 Y----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFT 451 (476)
Q Consensus 399 ~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~ 451 (476)
. .+.++++.+... + ..++.+.|.++||.+.++. ...+|+
T Consensus 283 ~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (382)
T 4eb5_A 283 HPEKRLPNNVNVRFSYI-----------E---GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp CSSSBCTTEEEEEETTS-----------C---HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred CcccCCCCEEEEEeCCc-----------C---HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence 1 255666666310 1 2567888889999998753 245788
Q ss_pred eCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 452 SLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
++. ++++++++++++|+++++++
T Consensus 349 ~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 349 TLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 765 69999999999999998764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=204.78 Aligned_cols=332 Identities=13% Similarity=0.065 Sum_probs=200.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
++..|+|+.++ ++.+|.+.+++.+++.+...+. +. .+...++.++++++++ ..++++|++||++|
T Consensus 17 ~~~~~Ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT------TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC------CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc------CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56788887655 2579999999999987632111 11 1234688888888886 45799999999999
Q ss_pred HHHHHHHHH-hc-----cCCceEEEEeCCCCCCch----------------hHHhhcCCCCccCCCCCCCCCCCCCCCce
Q 011856 168 CMGVLRLAR-AF-----TGRERIIKFEGCYHGHAD----------------PFLVKAGSGVATLGLPDSPGVPKGATYET 225 (476)
Q Consensus 168 ~~~al~~ar-~~-----~~~~~ii~~~~~yhg~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 225 (476)
++.+++.+. .+ ..+++|++.+++||++.. ......|..+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~--------- 161 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG--------- 161 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS---------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC---------
Confidence 999999653 11 256789999999988520 11111233222221110001
Q ss_pred eeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCcccc
Q 011856 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 295 (476)
Q Consensus 226 ~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~r~g 295 (476)
..|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++|| ++||+||+|......
T Consensus 162 ----~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~ 230 (432)
T 3a9z_A 162 ----QVEVEDILAAVRP---TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR 230 (432)
T ss_dssp ----SCCHHHHHHTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC
T ss_pred ----CcCHHHHHHhccC---CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc
Confidence 0278999988863 6889999999999999999 899999999999 999999999532221
Q ss_pred ccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH-HHhhcCCC---C-ccccCCCCCcHHHHHHHHHHHHHhcC--
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAPAG---P-MYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i-~~~l~~~~---~-~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (476)
.... ...+|++ +++|.+ |+++|++++++++ .+.+.+.. . .....+++.|+++++++.++++.+++
T Consensus 231 --~~~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 231 --VDVE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp --CCHH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --cChh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 1111 1246765 579977 4579999998875 33332100 0 01223456788888888888887654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hhcCCce---EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec
Q 011856 367 PGTYEYLNKITGELTQGIIDAG-KKAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 442 (476)
++..++++++.+++.+.|+++. ....+.. .....+.++.+.+.+... +. ..+.+.+ +|+++.
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~l--~~i~~~ 370 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------RG---YMVLAQC--QTLLAS 370 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------CH---HHHHHHC--SSEECB
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------cH---HHHHHHh--cCeEEe
Confidence 5677888888888888888752 1111000 012345566676643110 11 2233322 233332
Q ss_pred cC------------------C------CcceEEeCCC--cHHHHHHHHHHHHHHHHHh
Q 011856 443 PS------------------Q------FEAGFTSLAH--SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 443 ~~------------------~------~~~~~~~~~~--t~e~i~~~~~~l~~~~~~~ 474 (476)
.+ + ...+|+++.. |++|+++++++|+++++++
T Consensus 371 ~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 371 VGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp SSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 21 1 1457886554 8999999999999998765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=201.61 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCC----------CHHHHHHH-HHHHhhCCCCCeE-EEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 117 DDQVLAALGETMKKGTSFGAP----------CLLENVLA-EMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~----------~~~~~~la-~~l~~~~~~~e~v-~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
+|+|.+++.+++.+....+++ .+...+++ +++++.+ +.+.+ ++++||++|++.+++.+ ..+++.|
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~v~~~~Gs~a~~~al~~~--~~~gd~V 121 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF-NAGHANVQPHSGAQANGAVMLAL--AKPGDTV 121 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh-CCCCceeecCchHHHHHHHHHHc--cCCCCEE
Confidence 899999999988542111111 12334555 6666666 55555 45999999999999864 4567788
Q ss_pred EEEeCCCCCCc-hhHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc-ccCCCCCc
Q 011856 185 IKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE-PVVGNSGF 261 (476)
Q Consensus 185 i~~~~~yhg~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e-p~~~~~G~ 261 (476)
++.+++|++.. .... ...+..+....++.... . -.-|+++|++.+++. ++++|+++ |++ |.
T Consensus 122 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~---~~ 185 (425)
T 3ecd_A 122 LGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD--------T---MLIDYDQVEALAQQH--KPSLIIAGFSAY---PR 185 (425)
T ss_dssp EEECC------------------CEEEEECCCTT--------T---SSCCHHHHHHHHHHH--CCSEEEEECSCC---CS
T ss_pred EEcccccccceecchhhhhcccceeeeecCCCcc--------c---CccCHHHHHHHHhhc--CCcEEEEccccC---CC
Confidence 98888888732 2221 12222111101110000 0 011899999999742 46677776 443 33
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEec-HHHHHhhc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVA 336 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~-~~i~~~l~ 336 (476)
..+ +++|+++|++||++||+||+| .|+ +.+..... +. .+|++ ++||++ +|+++|+++++ +++.+.+.
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKIN 257 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHH
Confidence 444 899999999999999999997 666 44432211 11 14665 678999 45689999888 56766665
Q ss_pred CCCCccccCCCCCcHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeeceeEEEEEecCC
Q 011856 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGP 412 (476)
Q Consensus 337 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~ 412 (476)
.. .....+.+.++..++++.+++.... + +++.++++++.+++++.|.+. ++.... .+.+.++++.+....
T Consensus 258 ~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~ 331 (425)
T 3ecd_A 258 SA--VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVTGGTDNHLLLVDLRPKG 331 (425)
T ss_dssp HH--HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGGT
T ss_pred hh--hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeeccCCCCceEEEEEeCCCC
Confidence 21 1111122334444444444444332 2 467788888888888888774 221111 135667777764211
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEec----cCC------CcceEEe------CCCcHHHHHHHHHHHHHHHHHh
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~------~~~~~~~------~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.....+.+.|.++||++. |+. ...+|++ ..++++++++++++|++++++.
T Consensus 332 ------------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 332 ------------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp ------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 012466778889999998 331 1235664 2345999999999999988764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-24 Score=209.89 Aligned_cols=327 Identities=13% Similarity=0.065 Sum_probs=197.5
Q ss_pred CEEEe-cccChhhccCCC-CcHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 99 NEYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-----~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
|+|+| |.++ ++||+ .||.+.+++.++++.. ...+.+.+...+|.+++++++ +.+..++++||++|++.+
T Consensus 3 ~~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL-GMDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH-TCSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHH
Confidence 34566 3344 78888 5888888888877751 111223455678888888887 456677789999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchh---HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
++..... +++++|+.++.+|..... .....|..+... +...+ .-|+++|++.. +++
T Consensus 79 l~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~-------------~~d~~~l~~~~-----~~~ 137 (357)
T 3lws_A 79 LRIWSDE-TDNRTVAYHPLCHLEIHEQDGLKELHPIETILV--GAADR-------------LMTLDEIKALP-----DIA 137 (357)
T ss_dssp HHHHHHH-HTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC--SCTTS-------------CCCHHHHHTCC-----SCS
T ss_pred HHHHhhc-CCCcEEEecccceeeeeccchhhhccCcEEEEe--cCCCC-------------CcCHHHHhcCc-----Ccc
Confidence 9854322 222266666666653322 122223322221 11111 11788887761 367
Q ss_pred EEEEcccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCCCchh--hhhhhcCCCCcE
Q 011856 249 AIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 249 ~vi~ep~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~i 322 (476)
+|++++++|++ |.+. +.+++++|.++|++||++||+||+|. +. ..+.... . +....|++ ++||++++. ..
T Consensus 138 ~v~~~~p~np~~G~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~-~g 213 (357)
T 3lws_A 138 CLLLELPQREIGGVAP-AFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-E-IAGLFDSIYISFYKGLGGI-AG 213 (357)
T ss_dssp EEEEESSBGGGTSBCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-H-HHTTSSEEEEESSSTTCCS-SC
T ss_pred eEEEEcccccCCceeC-CHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-H-HHhcCCEEEEeccccCCCC-ce
Confidence 77777776664 6655 46669999999999999999999985 11 1121111 1 11123444 899999532 23
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eeeeec
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYIS 401 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g 401 (476)
|++++++++++.+.........+.+..++ .++++.++|+.. .+..++..++.+++.+.|+++ .++.. ..+..+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~ 287 (357)
T 3lws_A 214 AILAGPAAFCQTARIWKRRYGGDLISLYP-YIVSADYYYELR--KDRMGQYYEQAKQLAEQFNAL---PGVHTTPEVPVS 287 (357)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCCSCCHH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTS---TTEEEESSSCSS
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCcccchH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC---CCCeeccCCCcc
Confidence 88899999988775211111122323333 445555667653 233445677777787777653 12221 123567
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---c--ceEEe-----CCCcHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~--~~~~~-----~~~t~e~i~~~~~~l~~~~ 471 (476)
.++++.+... ......++.+.|.++||++.++.. + .++++ +..+++++++++++|.+++
T Consensus 288 ~~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 288 NMFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 7778877431 112235778889999999998732 1 34553 3468999999999998765
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-24 Score=212.59 Aligned_cols=331 Identities=15% Similarity=0.061 Sum_probs=189.0
Q ss_pred EEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC------CCCHHHHHHHHHHHhhCC-CCCeEEEeCC
Q 011856 93 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG------APCLLENVLAEMVISAVP-SIEMVRFVNS 163 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~------~~~~~~~~la~~l~~~~~-~~e~v~~~~s 163 (476)
.++.++..|+|+.++ +..+|.+.+++.+++.+. .... ...+...++.++++++++ .++++++++|
T Consensus 15 ~~~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 455677788887765 246899999999998752 1111 123456789999999986 4579999999
Q ss_pred HHHHHHHHHHHHHhc--cCCc-eEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 164 GTEACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 164 GseA~~~al~~ar~~--~~~~-~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
|++|++.+++.+..+ .+++ .|++.+..|++........ .|..+...+... .+ .-|+++|++
T Consensus 89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~ 154 (400)
T 3vax_A 89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SG-------------RISVEGVME 154 (400)
T ss_dssp HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TC-------------CCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CC-------------CcCHHHHHH
Confidence 999999999954211 2455 7777766666544333332 233222211110 00 017999998
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhc
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKII 316 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~l 316 (476)
.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.... .....+. +|++ +++|.+
T Consensus 155 ~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~----~~~~~~~-~d~~~~s~~K~~ 222 (400)
T 3vax_A 155 RLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGYGKV----PGDLTTP-IDMISISGHKIG 222 (400)
T ss_dssp TCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTTTTS----GGGGGSC-CSEEEEETGGGT
T ss_pred hcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhcCCC----CcChhhc-CcEEEEeHHHhC
Confidence 8863 6889999999999999988 99999999999999999999962111 1112233 7776 466954
Q ss_pred CCCCcEEEEE-ecHH-HH---HhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Q 011856 317 GGGLPVGAYG-GRRD-IM---EMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 317 g~G~~iG~~~-~~~~-i~---~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 385 (476)
| +.++|+++ ++++ +. ..+.+. .........+.++.++++..++++.+.+ ++..++++++.+++.+.|+
T Consensus 223 g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (400)
T 3vax_A 223 A-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA 301 (400)
T ss_dssp S-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence 4 33578888 7762 21 112210 0001122345577888888888886654 5666777777777777776
Q ss_pred HHhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------------------
Q 011856 386 DAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------- 445 (476)
Q Consensus 386 ~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------- 445 (476)
. ....+.... ...+.++.+.+... ...++.+.|. +||.+.++.
T Consensus 302 -~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~ 364 (400)
T 3vax_A 302 -S-TSFQVNGDQDHVVPHILNLSFEDV--------------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLP 364 (400)
T ss_dssp -T-TTCEECSCTTSBCTTEEEEECTTC--------------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCC
T ss_pred -C-CCEEEeCCcccCCCCEEEEEeCCC--------------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCC
Confidence 2 111111000 11234556654321 1256778888 899887642
Q ss_pred ----CcceEEeC---CCcHHHHHHHHHHHHHHHHH
Q 011856 446 ----FEAGFTSL---AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 ----~~~~~~~~---~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|+++ .++++++++++++|++++++
T Consensus 365 ~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 365 EEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHTSEEEEEEEEC--------------------
T ss_pred ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24567765 57899999999999988764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=201.85 Aligned_cols=257 Identities=14% Similarity=0.106 Sum_probs=181.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|++++++++ +.+++++++||++|++.+++.+ ...+++|++.++.|++....+.....
T Consensus 63 ~~~~~~~~l~~~la~~~-g~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~~------------ 127 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE-DAAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVFT------------ 127 (392)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTGG------------
T ss_pred CCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHHH------------
Confidence 45677788899999888 5568999999999999999953 45677899999999874433211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
....++..++.+|+++|++.+++ ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.+
T Consensus 128 ----~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 128 ----GWNVEYTPVALADLDAVRAAIRP---TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ----GGTCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ----hcCcEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01124566777799999999973 7899999999999999988 999999999999999999999632
Q ss_pred ccchhhccCCCCchhh--hhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t--~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
+.....+..+|+++ ++|.+++ | +++|+++++ +++++.+.. ..+..++..+++.+++++..++.+ +...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF---LQNGAGAVPGPFDAYLTMRGLKTL--VLRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 11122344568775 9999995 5 789999887 578777652 223345677888888887776543 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEe------------------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
++..++.+++.+.|++. +.+..+ ++.|.++++++..+ ......+..
T Consensus 267 ~~~~~~~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~------------~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG------------RTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc------------HHHHHHHHH
Confidence 56666666666666543 222222 55688999998531 233456666
Q ss_pred HHHHCCeEeccC
Q 011856 433 GMLEEGVYFAPS 444 (476)
Q Consensus 433 ~l~~~Gv~~~~~ 444 (476)
.|...|+.+..+
T Consensus 331 ~l~~~~~~~s~G 342 (392)
T 3qhx_A 331 KTNIFILAESLG 342 (392)
T ss_dssp HCSSSEECSCCC
T ss_pred hCCCceECCCCC
Confidence 666666655544
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=200.41 Aligned_cols=256 Identities=15% Similarity=0.118 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...++++.++++++.. +.++++||++|++.+++.+ ..++++|++.++.||+........... .
T Consensus 49 ~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------~ 115 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------G 115 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT----------T
T ss_pred CCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh----------c
Confidence 45666778888888887533 5556677899999999954 445678899888888744322111110 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (476)
..++..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+++ ..
T Consensus 116 ------g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 116 ------CYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp ------SCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred ------CCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 113566677799999999974 6788999999999999988 999999999999999999999876 32
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
. .. .++ +|++ +++|.+++ |.++ |++++++ ++++.+.+ .....+.+.++++++++.++++.+ +..
T Consensus 183 ~-~~---~~~--~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 251 (386)
T 1cs1_A 183 N-PL---ALG--ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPR 251 (386)
T ss_dssp C-GG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHH
T ss_pred C-cc---ccC--ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHH
Confidence 1 11 233 4554 79999984 5676 9998886 78887762 223334567888888877776533 234
Q ss_pred HHHHHHHHHHHHHHHHHHhh--h--cCCce----------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIIDAGK--K--AGHAI----------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~--~--~~~~~----------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
.++..++.+.+.+.|+++.. + ++... ..++.|.++.+.+.+. ...+.+.|.
T Consensus 252 ~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~ 316 (386)
T 1cs1_A 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRFLG 316 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHHHH
Confidence 45566666666666654310 0 01000 1234588888887421 135667778
Q ss_pred HCCeEecc
Q 011856 436 EEGVYFAP 443 (476)
Q Consensus 436 ~~Gv~~~~ 443 (476)
++||++..
T Consensus 317 ~~gi~~~~ 324 (386)
T 1cs1_A 317 GLSLFTLA 324 (386)
T ss_dssp TCSSSEEB
T ss_pred hCCcceEc
Confidence 88998864
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=201.55 Aligned_cols=320 Identities=11% Similarity=0.053 Sum_probs=200.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHh
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.++|+..+- +-...++++.+++. .++.+...+.++++.+++.++. .+++++++||++|++.+++.
T Consensus 29 ~v~~~~~~~---~~~~~~~~v~~a~~-------~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~--- 95 (374)
T 2aeu_A 29 ALYDLSGLS---GGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA--- 95 (374)
T ss_dssp GCEECSSCC---CCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH---
T ss_pred ceeeecccC---CCCCCCHHHHHHHH-------HhcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHh---
Confidence 345666542 11124788888775 1333455567788877777742 28899999999999999994
Q ss_pred ccCCceEEEEeCCCCCCchh--HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE-EEEcc
Q 011856 178 FTGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEP 254 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~-vi~ep 254 (476)
+ ++++|++.+++||++... .+...|. +++.+ .|+++|++. + +++++ |++++
T Consensus 96 ~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 L-KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVIITGS 149 (374)
T ss_dssp H-CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEEEECB
T ss_pred C-CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEEEEcc
Confidence 3 678899999999986542 2222222 12233 488998877 3 36788 88888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
++|++|. ....+++|.++|++||++||+||+|..+..+...........+|++ ++||.++ |+++|+++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~~~~ 225 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGKKELV 225 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEECHHHH
Confidence 8888884 3344999999999999999999998543211110000111235766 6999987 57999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHHHhhhc----CCceEeeeeceeE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYISGMF 404 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~----~~~~~v~~~g~~~ 404 (476)
+.+... ......+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+..... ++.....+.|.++
T Consensus 226 ~~l~~~---~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 301 (374)
T 2aeu_A 226 DKIYIE---GTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI 301 (374)
T ss_dssp HHHHHH---HHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred HHHHHh---hccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE
Confidence 887631 111123568899999999998653 22344555555555 56666543332 2222334556655
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHH-HHHCCeEeccCC-----CcceEEeCCC---cHHHHHHHHHHHHHHHHHhh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ-----FEAGFTSLAH---SSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~-----~~~~~~~~~~---t~e~i~~~~~~l~~~~~~~~ 475 (476)
++.-. . .. .+.....++... +.++||++.|+. ...+|+++.. ++++++++++.|+++++++.
T Consensus 302 ~~~~~-~---~~-----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 302 KRVYK-D---DT-----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp EEEES-S---HH-----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred Eeecc-c---cc-----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44310 0 00 000111235544 456899998863 2357887543 23348999999999888764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=200.25 Aligned_cols=310 Identities=14% Similarity=0.058 Sum_probs=204.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.++++++. + .+.+...++.+.+++++ +.+++++++||++|++.+++..+ ..+++.|++.+++|++..
T Consensus 19 ~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~- 93 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVSTL- 93 (393)
T ss_dssp CHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHH-
T ss_pred CHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHhHH-
Confidence 5888999999988753 2 35677788888888888 55799999999999999999531 345678888888888754
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
..+...|..+...+... .+. ..|+++|++.+++ ++++|++++ ++|.+.+ +++|.++|
T Consensus 94 ~~~~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i~~l~ 150 (393)
T 1mdo_A 94 NMIVLLGANPVMVDVDR-DTL------------MVTPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAIYALG 150 (393)
T ss_dssp HHHHHTTCEEEEECBCT-TTC------------CBCHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHHHHH
T ss_pred HHHHHCCCEEEEEeccC-CcC------------CCCHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHHHHHH
Confidence 34444454333222110 000 1289999999864 578888765 3566666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcCCCC---------
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPAGP--------- 340 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~~~~--------- 340 (476)
++||++||+||+|+ |+ ..+. .++. +|++++| |.+++| ++|+++++ +++++.+.....
T Consensus 151 ~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 151 ERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999999999997 44 3332 1232 7877554 888765 79999886 788776642111
Q ss_pred --------ccccCC----CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce--EeeeeceeEEE
Q 011856 341 --------MYQAGT----LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGF 406 (476)
Q Consensus 341 --------~~~~~t----~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i 406 (476)
.+...+ +..+++.++++.+.++.+ ++..++.+++.+++++.|.++..+..... ..++.+.++++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v 301 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFII 301 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEE
Confidence 000001 345778777777766543 34666667777777777765421111000 12234556777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEeCC--CcHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSDD 459 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~~~--~t~e~ 459 (476)
.+.... ......++.+.|.++||.+.++..+ .+|+++. +|++|
T Consensus 302 ~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~ 371 (393)
T 1mdo_A 302 RVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESD 371 (393)
T ss_dssp ECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHH
T ss_pred Eecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHH
Confidence 764200 0001357888999999998875422 3677654 69999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
+++++++|+++++.
T Consensus 372 i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 372 FDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=203.24 Aligned_cols=315 Identities=16% Similarity=0.109 Sum_probs=193.6
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
+++| .+|++.+|+.+.+.. ...++.+...+|.+++++++ +.+..++++||++|++.+++.+.. .+++.+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~-~~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKIL-GKQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 467888887774322 22346777889999999888 455667789999999999986533 233336666666
Q ss_pred CCCCch--hHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC-CcccCCH
Q 011856 191 YHGHAD--PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS-GFIAPKP 266 (476)
Q Consensus 191 yhg~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~-G~i~~~~ 266 (476)
+|.... ... ...|..+...+. ..+ .-|+++|++. . +++++|+++++++++ |.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~--~~~-------------~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~ 157 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGT--ANQ-------------LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AF 157 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSC--TTS-------------CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CH
T ss_pred ceeeehhcchHHHhcCceEEecCC--cCC-------------CcCHHHHHhc-c---CCceEEEEEecccCCCcccC-CH
Confidence 654322 112 233443322211 111 0178888877 2 367888888776654 5554 55
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCcc---ccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFR---LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r---~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~ 341 (476)
+++++|.++|++||++||+||+|..+. .+.. ...+....|++ ++||+++++.. |++++++++++.+......
T Consensus 158 ~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~ 234 (359)
T 3pj0_A 158 EELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRR 234 (359)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHH
Confidence 669999999999999999999985321 1111 11111234555 79999986433 7778999998887521111
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-eeeeceeEEEEEecCCCcCchhhc
Q 011856 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
...+++..++. ++++.++++.. .+..++..++.+++.+.|+++ .++... .+..+.++++.+...
T Consensus 235 ~~~~~~~~~~~-~~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~--------- 299 (359)
T 3pj0_A 235 YGGDLISLYPY-ILSADYYFEKR--IGKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVYFENS--------- 299 (359)
T ss_dssp TTCCCSCCHHH-HHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEESSC---------
T ss_pred hCCCcchhHHH-HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEEecCc---------
Confidence 12233333444 44455666543 245556777788888877754 122211 234566677766321
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCC------cceEEeC-----CCcHHHHHHHHHHHHHH
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSL-----AHSSDDIQHTITAAEKV 470 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~-----~~t~e~i~~~~~~l~~~ 470 (476)
.......+.+.|.++||++.++.. ..++++. ..+.+++++++++|.++
T Consensus 300 --~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 300 --ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp --HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred --cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 122346788899999999998742 1245533 36899999999998875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-22 Score=198.29 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=186.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-----------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|+|.+++.+++.+....+++ .+.+..+.+++++.++ ..+++ +++||++|++.+++.+ ...++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHHHHHHHHh--cCCCCE
Confidence 3899999999888542211111 2344455567777775 23334 5567899999999964 456678
Q ss_pred EEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
|++.+++|++..... +...+.......++.... -..|+++|++.+++. ++++|++.+.+ .|.
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~ 177 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELD------------GRIDYEKVREIAKKE--KPKLIVCGASA--YAR 177 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTT------------SSCCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCC------------CCcCHHHHHHHHHhc--CCeEEEECCcc--cCc
Confidence 999888887743311 111122111100000000 013899999999742 46677765543 377
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEec-HHHHHhhc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR-RDIMEMVA 336 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~-~~i~~~l~ 336 (476)
+.+ +++|+++|++||++||+||+| .|+ ..+.... .+. ..|+++ +||++ +|+++|+++++ +++++.+.
T Consensus 178 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 178 VID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHh
Confidence 777 999999999999999999997 454 3322110 011 247765 56999 56789999998 78888775
Q ss_pred CCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 337 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
.. ..+..+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+.. ..+.. ....+.++++.+.....
T Consensus 250 ~~--~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~-~~~~~~~~~~~~~~~~~ 324 (417)
T 3n0l_A 250 SA--IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK--FKLVS-DGTDNHLVLMSFLDREF 324 (417)
T ss_dssp HH--HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--CEEGG-GSCSSSEEEEECTTSSS
T ss_pred hh--hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC--ceecc-CCCCceEEEEEcccCCC
Confidence 31 11222334456666666666665332 4566777777788888887631 11111 01234466666532110
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEeccCCC----------cceEEeC------CCcHHHHHHHHHHHHHHHHH
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTSL------AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~~~~------~~t~e~i~~~~~~l~~~~~~ 473 (476)
....+.+.|.++||++.+... ..+++.. .++++++++++++|++++++
T Consensus 325 ------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 325 ------------SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 124667788899999875431 2356532 36789999999999998864
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=200.37 Aligned_cols=281 Identities=13% Similarity=0.015 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh---HHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~ 214 (476)
.+...+|.+.+++++ +.+++++++||++|+..+++.. ...++.|++.++.|++.... .+...|.
T Consensus 61 ~~~~~~l~~~ia~~~-g~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 466668888888887 4568999999999999999842 34567788888888774332 2222222
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~- 292 (476)
++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|.++
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 3556666789999998863 6889999998899999987 9999999999 99999999999866
Q ss_pred cccccchhhccCCCCchh--hhhhhcC-CCCcE-EEEEecHHHHH-hhcCCCCccccC-CCCCcHHHHHHHHHHHHHhcC
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~i-G~~~~~~~i~~-~l~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~ 366 (476)
.. ... .++ .|++ ++||.++ +|+|+ |++++++++++ .+.+. .... +.+.+++.+.++.++++.+
T Consensus 192 ~~-~~~---~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~l~~~-- 260 (404)
T 1e5e_A 192 IT-NPV---DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG---IKDITGSVISPHDAWLITRGLSTL-- 260 (404)
T ss_dssp TC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHTTH--
T ss_pred hC-Ccc---ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHhHhHH--
Confidence 32 111 133 4554 7999999 58998 99999999888 77642 1221 3457888888888887532
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh----hhcCCc----------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 367 PGTYEYLNKITGELTQGIIDAG----KKAGHA----------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~----~~~~~~----------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
+...++..++.+.+.+.|++.. ..++.. .+.++.|.|+.|++.+ . .....+
T Consensus 261 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------------~--~~~~~~ 325 (404)
T 1e5e_A 261 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------------G--FEGAKK 325 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------------H--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------------C--HHHHHH
Confidence 2334455556666666555431 001100 0123458888887732 0 123444
Q ss_pred HHHHCCeEeccC----------------------------C--CcceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 433 GMLEEGVYFAPS----------------------------Q--FEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 433 ~l~~~Gv~~~~~----------------------------~--~~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+.+.||++... + ...+|+++.. |+++++++.|+++++.++
T Consensus 326 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 326 LLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALL 396 (404)
T ss_dssp HHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 555678744321 1 2457888777 899999999999988764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=200.99 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=201.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHhhCCC-----CCeEEEeCCHHHHHHHHHHHHH-hccCCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTSFGAPC--LLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~--~~~~~la~~l~~~~~~-----~e~v~~~~sGseA~~~al~~ar-~~~~~~~ii~~ 187 (476)
.+|++.+++.+.+.. ++.+. ....++.+++++.+.. .++++|++||++|++.+++.+. ...++++|++.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 357777776554322 22221 2345566777776642 4799999999999999999542 11456678787
Q ss_pred eC-CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~-~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+. .||......+...|..+...+.....+ ..|+++|++.+++. ++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGE-------------SVPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCC-------------CCCHHHHHHHHhcC--CCCEEEEEccCCCcCeEcC--
Confidence 54 555543233444454333222200011 02899999999752 5678888988889999998
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH-hhcC----
Q 011856 267 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME-MVAP---- 337 (476)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~-~l~~---- 337 (476)
+++|.++|++| |++||+||+|+.... ......+ .+|++ +++|.++++..+|++++++++++ .+.+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999962111 1111222 35666 56898876555799999998877 5420
Q ss_pred -C-C---------C---ccccC----CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH-HHHhhhcCCce
Q 011856 338 -A-G---------P---MYQAG----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 395 (476)
Q Consensus 338 -~-~---------~---~~~~~----t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~ 395 (476)
. . + .+..+ .++.++.+++++.++++.+.+ ++..++++++.+++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 0 0 0 00001 135677888888888887643 345677777888888777 553 2211
Q ss_pred Eee-----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----cceEEe-CC-----CcHHH
Q 011856 396 CGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS-LA-----HSSDD 459 (476)
Q Consensus 396 ~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~~~-~~-----~t~e~ 459 (476)
... ..+.++++.+. + ..++.+.|.++||.+.++.. ..+|++ +. +|++|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 111 24667777652 1 25788888999999988642 356877 43 69999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
+++++++|++++++
T Consensus 370 i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 370 MKNCFDLIKLALQR 383 (385)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-22 Score=201.47 Aligned_cols=316 Identities=16% Similarity=0.130 Sum_probs=203.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc---c----
Q 011856 113 IGHADDQVLAALGETMKKGTSFGAP------CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---- 179 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~~~~~~------~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~---~---- 179 (476)
.+|.+|++.+++.++....+.+... .++..+++++++++++-...+++++||++|+..++++++.+ .
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4467788888887763222211111 15678889999988842234567899999999999887653 1
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++||+.+ .+|+.+...+...|..+..++... .+. -|+++|++.+++ ++++|++++.+ ++
T Consensus 155 ~r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~-~~~-------------~d~~~L~~~i~~---~t~~v~~~~pn-~~ 215 (474)
T 1wyu_B 155 TRRVVLVPD-SAHGSNPATASMAGYQVREIPSGP-EGE-------------VDLEALKRELGP---HVAALMLTNPN-TL 215 (474)
T ss_dssp TCCEEEEET-TSCTHHHHHHHHTTCEEEEECBCT-TSS-------------BCHHHHHHHCST---TEEEEEECSSC-TT
T ss_pred CCCEEEEeC-CcChhhHHHHHHCCCEEEEecCCC-CCC-------------cCHHHHHHhhCC---CceEEEEECCC-CC
Confidence 233666655 777877776666665433322111 010 189999999963 68888888754 57
Q ss_pred Ccc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhcCC-----CCcEEEEEecHHH
Q 011856 260 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGG-----GLPVGAYGGRRDI 331 (476)
Q Consensus 260 G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg~-----G~~iG~~~~~~~i 331 (476)
|.+ .+ +++|.++|++||++||+||+|..+..+.. ....++ +|+++ ++|.+++ |+++|++++++++
T Consensus 216 G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l 288 (474)
T 1wyu_B 216 GLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL 288 (474)
T ss_dssp SCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGG
T ss_pred cccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHH
Confidence 877 34 99999999999999999999954322211 112233 67775 5898862 3699999999998
Q ss_pred HHhhcCC-----CC-c----------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 332 MEMVAPA-----GP-M----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 332 ~~~l~~~-----~~-~----------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
++.+... +. . ....++++|+++++++.+.++.+.. ++..+++.++.+++.+.|+++ .+.
T Consensus 289 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~ 366 (474)
T 1wyu_B 289 APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYR 366 (474)
T ss_dssp GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCB
T ss_pred HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcE
Confidence 8776410 00 0 0112345788888888888875433 334777888888898888875 222
Q ss_pred CceEeeeecee--EEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCC--cHHHHHHH
Q 011856 393 HAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAH--SSDDIQHT 463 (476)
Q Consensus 393 ~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~--t~e~i~~~ 463 (476)
+. .+.+.+ +++.+.. .....++.+.|+++||++.... ...+|+++.. |+++++++
T Consensus 367 ~~---~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~ 430 (474)
T 1wyu_B 367 VP---YDGPSMHEFVAQPPE-------------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAF 430 (474)
T ss_dssp CS---SCSSCCSCEEEBCST-------------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred ec---CCCCcceEEEEEcCC-------------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHH
Confidence 21 111122 3333310 0113578889999999863221 2457886554 99999999
Q ss_pred HHHHHHHHH
Q 011856 464 ITAAEKVKM 472 (476)
Q Consensus 464 ~~~l~~~~~ 472 (476)
+++|+++++
T Consensus 431 ~~~L~~~~~ 439 (474)
T 1wyu_B 431 AEAMGALLK 439 (474)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-22 Score=196.34 Aligned_cols=281 Identities=15% Similarity=0.094 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
++++...+|++++++++ +.+++++++||++|+..+++.+ ..++++|++.++.||+..... +...|.
T Consensus 56 ~~~~~~~~l~~~la~~~-g~~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-------- 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIE-GAAGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI-------- 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 46788889999999988 4458888999999999999842 345678999999998854433 222222
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
++..++.+|++++++.+++ ++++|++|++++++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 125 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 125 -----------EVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp -----------EEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -----------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3555666799999998864 6899999999999999998 999999999999999999999754
Q ss_pred cccccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
..+. .++..+|++ +++|.+++ |.|+ |++++++ ++++.+.. .......+.++..+.++++.++.+ +
T Consensus 187 ~~~~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~ 256 (389)
T 3acz_A 187 CFLK-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF---YRKDAGSLMAPMDAFLCARGMKTL--P 256 (389)
T ss_dssp TTCC-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHcCccHH--H
Confidence 2111 123457877 79999995 6887 9999998 88887763 211112345788887777777533 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh----------hcCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 368 GTYEYLNKITGELTQGIIDAGK----------KAGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~----------~~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
...++..++...+.+.|++... +++.. ...++.|.++.+++.+ ...+.+.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----------------~~~~~~~ 320 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----------------FEAAKKL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC----------------HHHHHHH
Confidence 3345556666667676665310 00000 0113457888888742 1234455
Q ss_pred HHHCCeEeccC--C----------------------------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 434 MLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 434 l~~~Gv~~~~~--~----------------------------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+.+.|+++... + ...+|++.... +++++++.|++++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 55667766542 1 13456665543 677778888777753
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=192.41 Aligned_cols=311 Identities=14% Similarity=0.087 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
+|++.+++.++++++....++.+...++.+.++++++ .+..++++||++|++.+++..+ ..++++|++..++||+...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-AAHALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHHHHH
Confidence 4899999999998753223456677889999999884 4466667778999999999531 3456789998989888654
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
. +...|..+...+.....+ .-|+++|++.++. ++++|+ |+ +++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~--~~-n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATY-------------NLDPEAVAAAVTP---RTKVIM--PV-HMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTC-------------CBCHHHHHHHCCT---TEEEEC--CB-CGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcC-------------CCCHHHHHHhcCc---CceEEE--Ee-CCccCcCC----HHHHHHHH
Confidence 3 344444333222111000 0189999999863 567666 54 44677777 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHH-H--HHhhcC---CCC-----c
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAP---AGP-----M 341 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~-i--~~~l~~---~~~-----~ 341 (476)
++||++||+||+|+ |+ ..+.. ...++ ..++.+|| |.+++ .++|+++++++ + ++.+.. .+. .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999996 44 33321 12222 23344666 66654 58999998875 6 555421 100 0
Q ss_pred c----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe------eeeceeEEEEEecC
Q 011856 342 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEG 411 (476)
Q Consensus 342 ~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~ 411 (476)
+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ . ++.... +..+.++++.+...
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI-D--GVVPQGGDVRADRNSHYMAMFRIPGL 300 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS-T--TCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC-C--CccccCCCcCCCccceEEEEEEeCCc
Confidence 0 0122335677766665555433 346667777777787777653 1 121111 23356777776321
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---------------------------------ceEEe--CCC-
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH- 455 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------------------~~~~~--~~~- 455 (476)
......++.+.|.++||.++++..+ .++++ ..+
T Consensus 301 -----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 301 -----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred -----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 1123467888999999998765321 14554 356
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~ 473 (476)
|++|++++++.|++++++
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999999998764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=200.97 Aligned_cols=288 Identities=13% Similarity=0.034 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|+++++++. +.+.+++++||++|+..+++.. ...++.||+.++.|++..........
T Consensus 78 ~~~p~~~~l~~~la~~~-g~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIE-GAPAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 46788899999999988 5688999999999999999842 34567888889899884432211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
..+..+..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+. +
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~---~ 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFAT---P 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH---H
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCcc---c
Confidence 01124666777899999999974 5789999999999999988 99999999999999999999952 1
Q ss_pred ccchhhccCCCCchhhhhhhcCC-C-CcEEEEEecHHHHH-hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~-G-~~iG~~~~~~~i~~-~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
..+....+|....+.+++|.+++ | +++|+++++++.+. .+... ...++ ...++..+++++..++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~-~~~~g--~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL-MRHTG--PAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH-HHHHC--CCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH-HHHcC--CCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111234554445579999996 7 89999999988765 44310 01112 234677666665555433 334556
Q ss_pred HHHHHHHHHHHHHHHhhhcCCce------------------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 373 LNKITGELTQGIIDAGKKAGHAI------------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~------------------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
..++.+++.+.|++. +.+. ..++.|.|+++++..... .+.+...+|.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 667777777776643 2221 125678999999953100 0023446677777
Q ss_pred HHCCeEeccCCCc---------------------------ceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 435 LEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 435 ~~~Gv~~~~~~~~---------------------------~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...++.+..++.. .+|++.. .|+.+.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG--~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG--LEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC--SSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC--cCCHHHHHHHHHHhh
Confidence 6666655544322 2345443 366777788887775
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=201.67 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 120 v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+.+++.+.+..+. .++.+...++.+.+++++ +.+++++++||++|++.+++.++ ..+++.|++.+++|++.... +
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALH-NAPHAIGVGTGTDALAMSFKMLN-IGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHH-H
Confidence 7788877776642 346788889999999998 55699999999999999999531 45567888888888875433 3
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...|..+...+...... -|+++|++.+++ ++++|+ |+ +++|.+.+ +++|.++|++|
T Consensus 96 ~~~g~~~~~~~~~~~~~--------------~d~~~l~~~~~~---~~~~v~--~~-n~~G~~~~----~~~i~~~~~~~ 151 (374)
T 3uwc_A 96 VQAGATPVLVDSENGYV--------------IDPEKIEAAITD---KTKAIM--PV-HYTGNIAD----MPALAKIAKKH 151 (374)
T ss_dssp HHTTCEEEEECBCTTSS--------------BCGGGTGGGCCT---TEEEEC--CB-CGGGCCCC----HHHHHHHHHHT
T ss_pred HHcCCEEEEEecCCCCC--------------cCHHHHHHhCCC---CceEEE--Ee-CCcCCcCC----HHHHHHHHHHc
Confidence 34444322211110000 078888888764 567666 43 45777777 99999999999
Q ss_pred CCEEEEeccccCccccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEec-HHHHHhhcCCCC------cc---cc
Q 011856 280 GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGP------MY---QA 344 (476)
Q Consensus 280 g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~~-~~i~~~l~~~~~------~~---~~ 344 (476)
|++||+||+|+.+ ..+.....+..+|++++| |.+++ |. +|+++++ +++++.+..... .. .+
T Consensus 152 ~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
T 3uwc_A 152 NLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYG 227 (374)
T ss_dssp TCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCC
T ss_pred CCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCcccccc
Confidence 9999999999733 112223445456888766 99987 65 8888765 456555432100 00 12
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccc
Q 011856 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
.++..+++.++++...++.+ +++.++.+++.+++++.|.++.....++.... ....++.+.+...
T Consensus 228 ~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 293 (374)
T 3uwc_A 228 INCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK------------ 293 (374)
T ss_dssp CBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET------------
T ss_pred ccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC------------
Confidence 23344666666655544322 44667777777777777765431011111000 1112111222110
Q ss_pred hHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...++.+.|.++||.+.++.. ..++++ ..+|++||++++++|++++++
T Consensus 294 --~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 294 --YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp --THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 135788899999999887641 234553 557999999999999999875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=196.16 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=197.5
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
..++ .++++.+++.+.++.+. |....+...++.+.+++++ +.+++++++||++|++.+++... .+++|++.+++
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l~---~gd~Vlv~~~~ 99 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAAG---LTGEVIMPSMT 99 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHHT---CCSEEEEESSS
T ss_pred CCCC-ChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHcC---CCCEEEECCCc
Confidence 3444 47899999999887642 3211477788888888888 56799999999999999999642 45889999999
Q ss_pred CCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|++... .+...|..+...+.... +. .-|+++|++.+++ ++++|++.+ ++|...+ ++
T Consensus 100 ~~~~~~-~~~~~G~~~~~v~~~~~-~~------------~~d~~~l~~~i~~---~~~~v~~~~---~tG~~~~----l~ 155 (424)
T 2po3_A 100 FAATPH-ALRWIGLTPVFADIDPD-TG------------NLDPDQVAAAVTP---RTSAVVGVH---LWGRPCA----AD 155 (424)
T ss_dssp CTHHHH-HHHHTTCEEEEECBCTT-TS------------SBCHHHHGGGCCT---TEEEEEEEC---GGGCCCC----HH
T ss_pred cHHHHH-HHHHcCCEEEEEecCCC-cC------------CcCHHHHHHhhCc---CCcEEEEEC---CCCCcCC----HH
Confidence 888554 34444543332221100 00 0178999888863 577777653 3566655 99
Q ss_pred HHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh--hhh--hhcCCCCcEEEEEec-HHHHHhhcCC---CC
Q 011856 271 AIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPA---GP 340 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~--t~s--K~lg~G~~iG~~~~~-~~i~~~l~~~---~~ 340 (476)
+|.++|++||++||+||+|+ |+ ..+.. ++..+|++ +|| |.+++ +++|+++++ +++++.+... ..
T Consensus 156 ~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~ 229 (424)
T 2po3_A 156 QLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGF 229 (424)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999999997 77 44321 22225766 455 76665 799999998 7887766421 00
Q ss_pred --cc----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eec-----eeEEEEE
Q 011856 341 --MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS-----GMFGFFF 408 (476)
Q Consensus 341 --~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g-----~~~~i~~ 408 (476)
.+ .+.++..+++.+++++..++.+ +++.++.+++.+++.+.|.+ .+...... ..| .++.+.+
T Consensus 230 ~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~i~~ 303 (424)
T 2po3_A 230 DLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLAD----LPGVLVADHDRHGLNNHQYVIVEI 303 (424)
T ss_dssp TCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEEECCGGGGSCCCCCCEEEEE
T ss_pred cccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCccccCCCCCCccccEEEEEEE
Confidence 00 1112234577777766655543 23555555566666555543 21111111 111 3444554
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-c------------------------ceEEe--CCCcHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E------------------------AGFTS--LAHSSDDIQ 461 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~------------------------~~~~~--~~~t~e~i~ 461 (476)
.+.. ......++.+.|.++||.+.+... + .++++ ..++++|++
T Consensus 304 ~~~~----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~ 373 (424)
T 2po3_A 304 DEAT----------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR 373 (424)
T ss_dssp CHHH----------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH
T ss_pred CCcc----------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH
Confidence 3100 000125677888999999986321 1 05665 778999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++++
T Consensus 374 ~~~~~L~~~~~~ 385 (424)
T 2po3_A 374 RVADLLRLCATR 385 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=209.83 Aligned_cols=346 Identities=11% Similarity=0.064 Sum_probs=198.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHH-hhC-----C-CCCeEEEeCCHHHHHHHHHHHH--Hhc
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVI-SAV-----P-SIEMVRFVNSGTEACMGVLRLA--RAF 178 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~-~~~-----~-~~e~v~~~~sGseA~~~al~~a--r~~ 178 (476)
+..++.+|.+.+++.+.+.. ..|. +..++.+++++.+. +.. + +.++|++++|+++++..+++.. +.+
T Consensus 112 g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l 190 (546)
T 2zy4_A 112 DQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL 190 (546)
T ss_dssp HTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 34577888888888887753 2332 23467777666553 332 1 3579999999999999999852 224
Q ss_pred c-CCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 179 T-GRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 179 ~-~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
. +++.|++.+++|+++...+... .|..+..++.....++ . -|+++|++.+. .++++|+++..+
T Consensus 191 ~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~~~---~~~k~v~l~~p~ 255 (546)
T 2zy4_A 191 LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNW---------Q---YPDSELDKLKD---PAIKIFFCVNPS 255 (546)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTT---------B---CCHHHHGGGGS---TTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCC---------C---CCHHHHHHhhC---CCCeEEEEECCC
Confidence 3 4678999999998865443221 1221111111000000 0 17888887764 257777766667
Q ss_pred CCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCccccccchhhcc-CCCCchhhhhhhcC-CCCcEEEEEecHH-H
Q 011856 257 GNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD-I 331 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~r~g~~~~~~~~-g~~pDi~t~sK~lg-~G~~iG~~~~~~~-i 331 (476)
|++|.+.+.++ +++|.++| ++||++||+||+|.+|..+.....+.. +....+.+|||.+| +|+|+||++++++ +
T Consensus 256 NPtG~~~~~~~-l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l 334 (546)
T 2zy4_A 256 NPPSVKMDQRS-LERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNV 334 (546)
T ss_dssp SSSCBCCCHHH-HHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCH
T ss_pred CCCCccCCHHH-HHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHH
Confidence 77888776555 99999999 789999999999988822211111111 11122348999998 7999999998875 7
Q ss_pred HHhhcCCC---------------------------------CccccCCCCCcHHHHHHH-HH-HHHHhcC-CCHHHHHHH
Q 011856 332 MEMVAPAG---------------------------------PMYQAGTLSGNPLAMTAG-IH-TLKRLKE-PGTYEYLNK 375 (476)
Q Consensus 332 ~~~l~~~~---------------------------------~~~~~~t~~~~~~~~aaa-~a-al~~~~~-~~~~~~~~~ 375 (476)
++.+.... ......+.+.+.+.+.+. +. ....+++ +.+.+++++
T Consensus 335 ~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~ 414 (546)
T 2zy4_A 335 FDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQ 414 (546)
T ss_dssp HHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66652100 000122334566666542 21 1233333 333333333
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC----CCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----C
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG----PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----F 446 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~ 446 (476)
..+.-++.+.+... .++....+..|.++++.+... +...+.............+.+.+.++||.+.|+. .
T Consensus 415 ~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~ 493 (546)
T 2zy4_A 415 LIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNR 493 (546)
T ss_dssp HHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSS
T ss_pred HHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCC
Confidence 32222222222221 222212234455667776310 0000000000000012345677788999999874 2
Q ss_pred cceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+|+++.. +++++++++++|++++++.
T Consensus 494 ~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 494 PSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 357888776 8999999999999988754
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=196.52 Aligned_cols=315 Identities=17% Similarity=0.145 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-------CH---HHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-------CL---LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-------~~---~~~~la-~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|+|++|+.+++.+....+++ .. ..++++ +++++.+ +.+.+.+ ++||++|++.+++.+ ...++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 3899999999888642211111 11 224566 8888877 5566666 999999999999853 345678
Q ss_pred EEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE-cccCCCCC
Q 011856 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G 260 (476)
|++.+++|+++.... +...|.......++.... . -..|+++|++.+++. ++++|++ .|++++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA--------T---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT--------T---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcc--------c---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 888888877632211 111111111100110000 0 013899999999643 3456666 56655433
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhc
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
+ +++|+++|++||++||+||+| .|+ +.|..... +. ..|++ ++||+++ |+++|++++++++++.+.
T Consensus 201 ---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 ---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp ---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHH
T ss_pred ---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHh
Confidence 3 999999999999999999997 666 44432111 11 23555 6899996 789999999999888775
Q ss_pred CCCCccccCCCCC-cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh-cCCceEee--eeceeEEEEEe
Q 011856 337 PAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK-AGHAICGG--YISGMFGFFFT 409 (476)
Q Consensus 337 ~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v~--~~g~~~~i~~~ 409 (476)
.. ...++++. +...++++.+++..+.+ +++.+++.++.+++.+.|++.... .++. .+. ..+.++++.+.
T Consensus 270 ~~---~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 345 (447)
T 3h7f_A 270 SA---VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVS-VVSGGTDVHLVLVDLR 345 (447)
T ss_dssp HH---HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCE-EGGGSCSSSEEEEECT
T ss_pred hh---cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeE-EecCCCCCCEEEEEcC
Confidence 31 11122222 33335555556655433 346777888888888888765111 1221 111 23456666653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEec----cC------CCcceEEeC------CCcHHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTSL------AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~~~~~~~------~~t~e~i~~~~~~l~~~~~~ 473 (476)
.... ....+.+.|.++||++. +. ....+|+.. .++++|+++++++|++++.+
T Consensus 346 ~~~~------------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 346 DSPL------------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp TSSC------------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCC------------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 2110 11345566667799988 33 122356632 26899999999999998864
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=201.84 Aligned_cols=320 Identities=13% Similarity=0.072 Sum_probs=205.3
Q ss_pred CcHHHHHHHHHHHHhcCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhcc----C
Q 011856 116 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~---~~~-----~~~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~~----~ 180 (476)
+++.+.+++.+++..... +.+ ..+++.+++++++++++ . .+++++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999998877321 111 13566788889999886 2 4689999999999999999876531 1
Q ss_pred --CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 181 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 181 --~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
++.|++.. ..|..+...+...|..+..++.....+. -|+++|++.+++ ++++|+++.++++
T Consensus 156 ~~~~~Vi~~~-~~h~~~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPV-TAHAGFDKAAYYFGMKLRHVELDPTTYQ-------------VDLGKVKKFINK---NTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEET-TSCHHHHHHHHHSCCEEEEECBCTTTCS-------------BCTTTTGGGCCS---SEEEEEEETTCTT
T ss_pred CCCceEEEeC-CccHHHHHHHHHcCCeEEEEecCcccCc-------------CCHHHHHHHHhh---CCEEEEEECCCCC
Confidence 24555554 4555566666666654433222110010 167888888864 5888999888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-----cc----cchhhccCCCCchh--hhhhhcCCCCcEEEEE
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----AY----GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG 326 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-----g~----~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~ 326 (476)
+|.+.+ +++|+++|++||++||+||+|+++ +. +. .+.....|+ |++ +++|.+.+|.++|+++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~ 292 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIM 292 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEE
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEE
Confidence 999988 889999999999999999999866 42 11 122223333 555 4669888888999999
Q ss_pred ecHHHHHhhcCC-CCccccCC-----C--CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 327 GRRDIMEMVAPA-GPMYQAGT-----L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 327 ~~~~i~~~l~~~-~~~~~~~t-----~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
++++.+...... .+.+..++ + +.+....++..++++.+.+ +++.++..++.+++++.|++... ++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--g~~~ 370 (497)
T 3mc6_A 293 YRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP--DLDI 370 (497)
T ss_dssp CSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred ecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEE
Confidence 887766544211 01111111 1 1122223344444554433 45667777888888888877311 1111
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-ceEEe-CCCcHHHHHHHHHHHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~~~-~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.....+.++.+.... ....++.+.|.++||.+.....+ .++++ ..+|++++++++++|++++++
T Consensus 371 ~~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 371 MGNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp CSCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 112345555554311 11357889999999998876533 35553 267999999999999999876
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
+
T Consensus 437 ~ 437 (497)
T 3mc6_A 437 L 437 (497)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=194.07 Aligned_cols=217 Identities=15% Similarity=0.104 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++.+...+++++++++++ .+++++++||++|+..+++.+ ..++++|++.++.||+........... .
T Consensus 62 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~~----------~ 128 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG-GEAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIGE----------F 128 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGGG----------G
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHHH----------c
Confidence 367778889999988884 458888999999999999953 345678888888888854433211000 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ ..+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+..+
T Consensus 129 g------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 129 G------VKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp T------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred C------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1 13455666799999999873 6899999999999999988 999999999999999999999744111
Q ss_pred ccchhhccCCCCchhhhhhhcCC-CCcE-EEEEecHHHHH-hhcCCCCcccc-CCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~-G~~i-G~~~~~~~i~~-~l~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
.. ..++....+.+++|.+++ |.|+ |++++++++++ .+.. .... .+.+.+++.++++.++++.+ +...+
T Consensus 196 ~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ---GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT---HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH---HhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 11 123443444589999994 7887 88899988765 4542 2222 24467888888888777543 34556
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIID 386 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (476)
+..++.+.+.+.|++
T Consensus 268 ~~~~~~~~l~~~L~~ 282 (398)
T 1gc0_A 268 RHCANAQVLAEFLAR 282 (398)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 667777777777765
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=197.22 Aligned_cols=304 Identities=17% Similarity=0.096 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.+.+..+. .++.+...++.+.+++++ +.+++++++||++|++.+++.+ ....++.|++....|++...
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 91 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGY-DIGFGDEVIVPSNTFIATAL 91 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEETTSCTHHHH
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 3456666666665542 346677788888888888 5579999999999999999953 13456788888888887443
Q ss_pred hHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
.+...|..+...+.. ....+ |+++|++.+++ ++++|++ ++++|.+.+ +++|.++
T Consensus 92 -~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~l~~---~~~~v~~---~n~~G~~~~----l~~i~~l 146 (373)
T 3frk_A 92 -AVSYTGAKPIFVEPDIRTYNI--------------DPSLIESAITE---KTKAIIA---VHLYGQPAD----MDEIKRI 146 (373)
T ss_dssp -HHHHHSCEEEEECEETTTTEE--------------CGGGTGGGCCT---TEEEEEE---ECCTTCCCC----HHHHHHH
T ss_pred -HHHHcCCEEEEEeccccccCc--------------CHHHHHHhcCC---CCeEEEE---ECCCcCccc----HHHHHHH
Confidence 344445433221111 00000 78888888764 6777773 345777777 9999999
Q ss_pred HHHhCCEEEEeccccC-ccccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEec-HHHHHhhcC---CCC-----
Q 011856 276 TKENGALLIFDEVMTG-FRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AGP----- 340 (476)
Q Consensus 276 ~~~~g~llI~DEv~~g-~r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~~-~~i~~~l~~---~~~----- 340 (476)
|++||++||+||+|+. .. +.....+..+|++++| |.+++ |. .|+++++ +++++.+.. .+.
T Consensus 147 ~~~~~~~li~D~a~~~g~~----~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 221 (373)
T 3frk_A 147 AKKYNLKLIEDAAQAHGSL----YKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYH 221 (373)
T ss_dssp HHHHTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTB
T ss_pred HHHcCCEEEEECCcccCCE----ECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCc
Confidence 9999999999999962 22 1122345456888766 99986 64 7888775 456555431 111
Q ss_pred -ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchh
Q 011856 341 -MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFED 418 (476)
Q Consensus 341 -~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~ 418 (476)
...+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++. ..++.... ....+..+.+...
T Consensus 222 ~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 290 (373)
T 3frk_A 222 HIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRSE------- 290 (373)
T ss_dssp CCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEES-------
T ss_pred cccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEeC-------
Confidence 111234456777777766665533 3466666777777776665432 11110000 1111111111110
Q ss_pred hcccchHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe--CCCcHHHHHHHHHHHHH
Q 011856 419 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
...++.+.|.++||.+++... ..++++ ..+|++|+++++++|++
T Consensus 291 -------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 291 -------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp -------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 135788899999999885431 124664 57799999999999987
Q ss_pred HHH
Q 011856 470 VKM 472 (476)
Q Consensus 470 ~~~ 472 (476)
+..
T Consensus 364 ~~~ 366 (373)
T 3frk_A 364 WKL 366 (373)
T ss_dssp CC-
T ss_pred Hhh
Confidence 654
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=193.41 Aligned_cols=323 Identities=11% Similarity=0.049 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHHhcCCC-CCC----CHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHH-Hhcc-CCceEEEE
Q 011856 117 DDQVLAALGETMKKGTSF-GAP----CLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLA-RAFT-GRERIIKF 187 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~-~~~----~~~~~~la~~l~~~~~~~e--~v~~~~sGseA~~~al~~a-r~~~-~~~~ii~~ 187 (476)
-|.|++|....++..... +.| .++++++++.+.......+ ...-+.+|+.|+..++.+. +.+. +++.|++.
T Consensus 64 l~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip 143 (420)
T 4h51_A 64 LRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLS 143 (420)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 378888887777664433 223 3445555554432211222 3455889999998888754 3343 56779999
Q ss_pred eCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+++|..+. ..+...|.. +....+.... ... .|.+.+.+.++..++...+++..+.+|++|.....
T Consensus 144 ~P~w~~y~-~i~~~aG~~~V~~~~~~~~~---------~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~- 209 (420)
T 4h51_A 144 DPTWPNHY-GVVKAAGWKNICTYAYYDPK---------TVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQ- 209 (420)
T ss_dssp ESCCTHHH-HHHHHTTCCCEEEEECEEGG---------GTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCH-
T ss_pred cCCchhHH-HHHHHcCCeEEEeecccccc---------ccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCH-
Confidence 99886643 444444432 2111110000 000 16788888887655667777777777788877654
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccc----cchhh-ccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhhcC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAY----GGAQE-YFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~----~~~~~-~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~ 337 (476)
+.+++|.++|+++++++|+||+|.||..+. .+... ..+..+.++ +|||.++ .|+|+||+++..+..+....
T Consensus 210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 449999999999999999999999983321 11111 112222333 7999999 79999999775443222110
Q ss_pred ---CCCccccCCC-CCcHHHHHHHHHHHHH--h----c-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEE
Q 011856 338 ---AGPMYQAGTL-SGNPLAMTAGIHTLKR--L----K-E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (476)
Q Consensus 338 ---~~~~~~~~t~-~~~~~~~aaa~aal~~--~----~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (476)
.-.....+++ +.+..++.++...+.. + + + +.++++++++++.+.+.|++++....+....+..|.|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 0001111233 3444555555544431 0 1 1 334555666666666666665322111111234455543
Q ss_pred EEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHHHhh
Q 011856 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+-+. .+.++.|.++||++.+++ |++++ .+++.|+.++++|.++++++.
T Consensus 370 ~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 370 LGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp CCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred cCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 3221 233467789999998865 88765 599999999999999998764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-21 Score=191.26 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=194.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
..+++.+|+..+++.+ ...+..|+ ...+...++++++++++ +.+++++++||++|++.+++.+ ..++++|++.++
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALE-GALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4567776665555443 22222232 24577889999999988 5569999999999999999943 345678888888
Q ss_pred CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 011856 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (476)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (476)
.|++.......... ..+ .++..++. |+++|++.+++ ++++|+++++++++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------~~g------~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------LMG------VTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------TTT------CEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------HcC------CEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----H
Confidence 88764333211000 011 13444554 48999998864 6899999999999999988 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecH----------------
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRR---------------- 329 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~---------------- 329 (476)
++|.++|++||+++|+||+|+++ ... ...+..+|++ +++|.++ +|.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999754 111 1223346776 4899998 478899886543
Q ss_pred ------------HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 330 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 330 ------------~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
++.+.++... .... ....+|..++.+...++.+ +...++..++.+++.+.|.+. +.+..+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~-~~~~-g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLG-LSLC-GMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHH-TTTT-CCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHHH-HHhc-CCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 3334333100 0111 2245777777766666544 334555667777887777653 211111
Q ss_pred ------------------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------------
Q 011856 398 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 445 (476)
Q Consensus 398 ------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------- 445 (476)
++.|.++.+.+ .+ ...+.+.+.+.||++ .+.
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24677888887 32 134556666788887 431
Q ss_pred ----------------CcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 446 ----------------FEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 446 ----------------~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
...+|+ ...+++++++.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 123455 456688888888888764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=203.23 Aligned_cols=311 Identities=11% Similarity=0.084 Sum_probs=199.2
Q ss_pred cCCCCcHHHHHHHHHH----HHhc-CCC-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEE
Q 011856 112 IIGHADDQVLAALGET----MKKG-TSF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 185 (476)
Q Consensus 112 ~lG~~~p~v~~a~~~~----l~~~-~~~-~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii 185 (476)
+.|-.++.|.++.... .+.+ ..| .+..+...++++++++++ +.+++++++||++|+..+++ ...+++.||
T Consensus 100 ~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~-g~~~~i~~~sGt~al~~~l~---~~~~Gd~Vi 175 (464)
T 1ibj_A 100 PFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIV 175 (464)
T ss_dssp TTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEE
T ss_pred CCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEEE
Confidence 3343456666665432 1122 112 134667889999999988 45689999999999988876 455678899
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
+.++.||+......... ...+..+..++.+|+++|++.++. ++++|++++++|++|.+.+
T Consensus 176 ~~~~~y~~~~~~~~~~~----------------~~~G~~v~~v~~~d~~~l~~~i~~---~tk~v~l~~p~NptG~v~~- 235 (464)
T 1ibj_A 176 AGDDVYGGSDRLLSQVV----------------PRSGVVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQISD- 235 (464)
T ss_dssp EESSCCHHHHHHHHHTS----------------GGGTCEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCCCC-
T ss_pred EECCCchhHHHHHHHHH----------------HHcCCEEEEeCCCCHHHHHHHhcc---CceEEEEeCCCCCCCEeec-
Confidence 99988887432210000 011124566777799999999863 6899999999999999997
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEec-HHHHHhhcCCCC
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGP 340 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~-~~i~~~l~~~~~ 340 (476)
+++|.++|++||++||+||+|... ..+. ......|++ +++|.+++ |+++|+++++ +++++.+..
T Consensus 236 ---l~~i~~la~~~gi~livDea~~~g---~~~~--~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~--- 304 (464)
T 1ibj_A 236 ---IRKISEMAHAQGALVLVDNSIMSP---VLSR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF--- 304 (464)
T ss_dssp ---HHHHHHHHHTTTCEEEEECTTTCT---TTCC--GGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---
T ss_pred ---HHHHHHHHHHcCCEEEEECCCccc---ccCC--hhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH---
Confidence 999999999999999999999531 1111 111235766 69999985 8999999998 478777652
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh----------hhcCCc----eEeeeeceeEEE
Q 011856 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGF 406 (476)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i 406 (476)
.......+.+++.+.+++++|+.+. ...++..++...+.+.|++.. .+++.. ...++.|.++++
T Consensus 305 ~~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~ 382 (464)
T 1ibj_A 305 LQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382 (464)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEE
T ss_pred HHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEE
Confidence 1111234567888888877775321 112222233333333333210 111100 012345778888
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------------------------CcceEEeCCCcHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTSLAHSSDD 459 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~~~~~~~~t~e~ 459 (476)
.+.+ ......+.+.|...||.+..+. ...+|+++.. |+
T Consensus 383 ~l~~-------------~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--ed 447 (464)
T 1ibj_A 383 ITGS-------------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--ED 447 (464)
T ss_dssp ECSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SC
T ss_pred EECC-------------HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CC
Confidence 8731 1122456677766777665542 2357887776 89
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 448 i~~li~~L~~al~~~ 462 (464)
T 1ibj_A 448 VDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998753
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=196.05 Aligned_cols=301 Identities=14% Similarity=0.047 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
|++.+++.+++..+ ..++.+...++.+.+++++ +.+++++++||++|++.+++.++ ..+++.|++...+|++....
T Consensus 16 ~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~~~~~~~~~~ 91 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG--QYILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMALG-VGPGDEVITPGFTYVATAET 91 (367)
T ss_dssp HHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHH
T ss_pred HHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHH
Confidence 45666666666654 2336677788888898888 55699999999999999999642 34567888888888774443
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
+...|..+...+.....+ .-|+++|++.+++ ++++|++++ ..|...+ +++|.++|+
T Consensus 92 -~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~~i~~la~ 147 (367)
T 3nyt_A 92 -VALLGAKPVYVDIDPRTY-------------NLDPQLLEAAITP---RTKAIIPVS---LYGQCAD----FDAINAIAS 147 (367)
T ss_dssp -HHHTTCEEEEECBCTTTC-------------SBCGGGTGGGCCT---TEEEECCBC---GGGCCCC----HHHHHHHHH
T ss_pred -HHHcCCEEEEEecCCccC-------------CcCHHHHHHhcCc---CCcEEEeeC---CccChhh----HHHHHHHHH
Confidence 344444332221111000 0178888888853 678777433 4566666 999999999
Q ss_pred HhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEe-cHHHHHhhcCCCCc--------
Q 011856 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGG-RRDIMEMVAPAGPM-------- 341 (476)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~-~~~i~~~l~~~~~~-------- 341 (476)
+||++||+||+|+ |. ..+. ..+...|++++| |.+++ |. .|++++ ++++++.+......
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~ 221 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHH 221 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCcee
Confidence 9999999999995 44 3332 122223887665 99997 76 888877 47777665421110
Q ss_pred -cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-eeeeceeEEEEEecCCCcCchhh
Q 011856 342 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
..+.++..+++.++++++.++.+ +++.++.+++.+++++.|.++....+.... ......++.+.+.
T Consensus 222 ~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 222 IRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----------
T ss_pred eccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----------
Confidence 11346778899999888888755 456777888888888888876322111100 0111112222221
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC-c-----------------------ceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~-----------------------~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
....+.+.|.++||.++.... + .++++ ...|++|++++++.++++
T Consensus 290 ------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 125788899999998875532 0 12454 467999999999999865
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-22 Score=196.59 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh----cCCCCccCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGL 211 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~ 211 (476)
+.++...+|+++++++. +.+.+++++||++|++.++. ....++.|++.++.||+........ .|.
T Consensus 64 ~~~p~~~~l~~~la~l~-g~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~------- 132 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE-GGTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL------- 132 (400)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHh-CCCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe-------
Confidence 46777788888888887 45689999999999998544 3445678888888888754433221 121
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
.+..++.+|+++|++.+++ ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 133 ------------~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 133 ------------DFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp ------------EEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred ------------EEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 3566777899999999864 6899999999999999998 99999999999999999999952
Q ss_pred ccccccchhhccCCCCchhhhhhhcCC-CCcEEE--EE-ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 292 FRLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--YG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~sK~lg~-G~~iG~--~~-~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
. .......+|..+.+.+++|.+++ |.++|+ ++ .++++++.+.. .....+...+|+.+..++..++.+ +
T Consensus 194 ~---~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~ 265 (400)
T 3nmy_A 194 P---MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--P 265 (400)
T ss_dssp H---HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--H
T ss_pred c---ccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--H
Confidence 2 11111123444444579999995 566655 44 47778777752 223334567888887777766543 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEe------------------eeeceeEEEEEe
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFT 409 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~ 409 (476)
...++..++..++.+.|++ ++.+..+ ++.|.|+++++.
T Consensus 266 ~r~~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 3445556666666666553 4444333 678999999995
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=195.54 Aligned_cols=313 Identities=11% Similarity=0.036 Sum_probs=180.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC----------CCHHHHH-HHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 116 ADDQVLAALGETMKKGTSFGA----------PCLLENV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~----------~~~~~~~-la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
.||+|.+|+.+++.+....++ ..+...+ ..+++++.++.....++++||++|++.+++.. ..+++.|
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~--~~~gd~v 119 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LQPGDTV 119 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh--cCCCCEE
Confidence 599999999998854221111 1122333 33677777742222234678899999999853 3455667
Q ss_pred EEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcc
Q 011856 185 IKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (476)
Q Consensus 185 i~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (476)
++..+.|++...... ...+..+....++.... ...|+++|++.++++ ++++|++++.++ |..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~ 183 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDES------------GKIDYDEMAKLAKEH--KPKMIIGGFSAY--SGV 183 (420)
T ss_dssp EEEEEC------------CHHHHSEEEEEEECTT------------CSCCHHHHHHHHHHH--CCSEEEECCTTC--CSC
T ss_pred EecchhhcceeccchhhhhcccceeEEeccCCcc------------CCcCHHHHHHHHHhc--CCeEEEEecCcc--CCc
Confidence 776666554221111 11111110000000000 013899999999753 467777754222 335
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecH---HHHHhh
Q 011856 263 APKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR---DIMEMV 335 (476)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~---~i~~~l 335 (476)
.+ +++|+++|++||++||+||+| .|+ +.+..... .. .+|+++ +||+++ |.+.|++++++ ++++.+
T Consensus 184 ~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~~ 255 (420)
T 3gbx_A 184 VD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKKL 255 (420)
T ss_dssp CC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHHH
T ss_pred cC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHHh
Confidence 55 999999999999999999998 455 44432211 11 278775 779997 55679999887 777766
Q ss_pred cCCCCccccCCCCC-cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEec
Q 011856 336 APAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTE 410 (476)
Q Consensus 336 ~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~ 410 (476)
.. ....++++. +...++++..++..+.+ +++.++++++.+++++.|.+. ++..... ..+.++++.+..
T Consensus 256 ~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~ 328 (420)
T 3gbx_A 256 NS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLVD 328 (420)
T ss_dssp HH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGG
T ss_pred hh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcCC
Confidence 52 112222222 33333443434543322 456778888888888888763 2211111 356677777642
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEecc-------C---CCcceEEeCC------CcHHHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-------S---QFEAGFTSLA------HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~---~~~~~~~~~~------~t~e~i~~~~~~l~~~~~~ 473 (476)
... ....+.+.|.++||++.+ + +...+|+++. .+++++++++++|++++++
T Consensus 329 ~~~------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 329 KNL------------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp GTC------------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCC------------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 110 124567778889999987 2 1223677432 5689999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=190.84 Aligned_cols=312 Identities=14% Similarity=0.087 Sum_probs=196.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh-ccCCceEEEEeCCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 194 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~-~~~~~~ii~~~~~yhg~ 194 (476)
.+|++.+++.++++++. ..+.+...++.+.+++++ +.+++++++||++|++.+++.++. ..++++|++.+++|++.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 58999999999987642 335677788899998888 455999999999999999996421 34567888888888875
Q ss_pred chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
... +...|..+...+... .+ ..|+++|++.+++ ++++|++.+. +|.+.+ +++|.+
T Consensus 88 ~~~-~~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANM-LLESGYTPVFAGIKN-DG-------------NIDELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHH-HHHTTCEEEECCBCT-TS-------------SBCGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHH-HHHCCCEEEEeccCC-CC-------------CCCHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHHH
Confidence 543 333444332221110 00 0177888887753 5676555444 678877 999999
Q ss_pred HHHHhCCEEEEeccccCccccccchhhccCCCCc--hhhhh--hhcCCCCcEEEEEe-c-HHHHHhhcCCCC-cc-----
Q 011856 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD--LTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGP-MY----- 342 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pD--i~t~s--K~lg~G~~iG~~~~-~-~~i~~~l~~~~~-~~----- 342 (476)
+|++||++||+||+|+...... ...++..+| +.++| |.++.| +|++++ + +++++.+.+... ..
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDF 217 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSS
T ss_pred HHHHcCCEEEEECccccCCeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccccc
Confidence 9999999999999996431111 112232234 44788 999764 777766 3 677766542110 00
Q ss_pred -------ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhcCCce-EeeeeceeEEEEEecCCC
Q 011856 343 -------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG-KKAGHAI-CGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 343 -------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~-~v~~~g~~~~i~~~~~~~ 413 (476)
...++..+++.++++...++.+ ++..++.+++.+++.+.|+++. ....... ...+.+.++++.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 293 (375)
T 2fnu_A 218 FEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK-- 293 (375)
T ss_dssp SCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG--
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc--
Confidence 1112355677666665544322 4566777777777777776531 0110000 0011233445655321
Q ss_pred cCchhhcccchH-HHHHHHHHHHHCCeEeccCC-----------------C--------cceEEeCC--CcHHHHHHHHH
Q 011856 414 YNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSLA--HSSDDIQHTIT 465 (476)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~-----------------~--------~~~~~~~~--~t~e~i~~~~~ 465 (476)
.. ...++.+.|.++||.+.... . ..+|+++. +|++|++++++
T Consensus 294 ----------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~ 363 (375)
T 2fnu_A 294 ----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH 363 (375)
T ss_dssp ----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ----------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHH
Confidence 00 23578888999999988311 0 24677644 59999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
+|+++++++
T Consensus 364 ~l~~~~~~~ 372 (375)
T 2fnu_A 364 SVLKTFESF 372 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-21 Score=195.10 Aligned_cols=340 Identities=14% Similarity=0.060 Sum_probs=204.2
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~ 169 (476)
.++.|+|+..+ +..++.+.+++.....+.....+ ..+++.++.++++++++ . .+.++|++||++|+.
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 34456655543 33578888887665544221111 23566677888999885 2 378999999999999
Q ss_pred HHHHHHHhc------------cC-----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-
Q 011856 170 GVLRLARAF------------TG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (476)
Q Consensus 170 ~al~~ar~~------------~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 231 (476)
.+++.+|.. .+ ++..|+.....|......+...|.+. .+++.+|.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~----------------~~v~~v~~~~ 236 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE----------------KAVMTVDANA 236 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG----------------GGEEEECBCT
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc----------------ccEEEEecCC
Confidence 999987632 11 23255555556665555554444321 012223322
Q ss_pred ----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc
Q 011856 232 ----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (476)
Q Consensus 232 ----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (476)
|+++|++.+++. +..+.+|+++..++++|.+.+ +++|.++|++||++|++|++|.++ .... +.....
T Consensus 237 ~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~ 311 (497)
T 2qma_A 237 DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLK 311 (497)
T ss_dssp TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGT
T ss_pred CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhc
Confidence 788999988642 112446677666667888888 999999999999999999999877 4433 322234
Q ss_pred CC-CCchhh--hhhhcCCCCcEEEEEecHH-HHHhhcCCCCcc-ccCCCCCcHHHH----------HHHHHHHHHhcC--
Q 011856 304 GV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IMEMVAPAGPMY-QAGTLSGNPLAM----------TAGIHTLKRLKE-- 366 (476)
Q Consensus 304 g~-~pDi~t--~sK~lg~G~~iG~~~~~~~-i~~~l~~~~~~~-~~~t~~~~~~~~----------aaa~aal~~~~~-- 366 (476)
++ .+|+++ ++|.+++++++|+++++++ .++.+.....+. ...+...++... .+..++++.+..
T Consensus 312 gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g 391 (497)
T 2qma_A 312 GVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKA 391 (497)
T ss_dssp TGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHH
T ss_pred CcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHH
Confidence 55 678775 4899988789999987644 445443211111 111111122211 122334554432
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-
Q 011856 367 -PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS- 444 (476)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~- 444 (476)
+++.++..++.+++.+.|+++. ++.......+.++.+.+..... .......++.+.|.++|+++.+.
T Consensus 392 ~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~ 460 (497)
T 2qma_A 392 LGDMYDHLLAQTLEVADMIRTND---QFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGET 460 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT---TEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEee
Confidence 3566777778888888777531 1111112345577776643210 01122356778888999987652
Q ss_pred ---CCcceEEeC---CCcHHHHHHHHHHHHHHHHHh
Q 011856 445 ---QFEAGFTSL---AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 445 ---~~~~~~~~~---~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+...+|+++ .+|++|+++++++|+++++++
T Consensus 461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 223567654 679999999999999998764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-21 Score=189.47 Aligned_cols=323 Identities=16% Similarity=0.060 Sum_probs=199.2
Q ss_pred cHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCc
Q 011856 117 DDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~ 195 (476)
+|++.+++.+.++++ +.. ..+...++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++.+++|++..
T Consensus 11 ~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 11 GGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASV 86 (394)
T ss_dssp -CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGT
T ss_pred CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHH
Confidence 467888888888763 221 1355678888888877 56899999999999999999531 345678999999998865
Q ss_pred hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
..+. ..|..+...+... .+ ..|+++|++.+++.++++++|++++ ++|...+ +++|.++
T Consensus 87 ~~~~-~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l 144 (394)
T 1o69_A 87 APIC-YLKAKPVFIDCDE-TY-------------NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEI 144 (394)
T ss_dssp HHHH-HTTCEEEEECBCT-TS-------------SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HHHH-HcCCEEEEEEeCC-CC-------------CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHH
Confidence 4443 3443332211110 00 1289999999975433477788776 3565555 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec-HHHHHhhcCCCCcc-------c
Q 011856 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVAPAGPMY-------Q 343 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~-~~i~~~l~~~~~~~-------~ 343 (476)
|++||++||+||+|+ |+ ..+.... . ++ ..|+.++ +|.++ |.++|+++++ +++++.+....... .
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 220 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYE 220 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred HHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence 999999999999997 76 4432110 1 11 3577777 56665 5689999995 78877764211110 0
Q ss_pred ----cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece--eEEEEEecCC-----
Q 011856 344 ----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG--MFGFFFTEGP----- 412 (476)
Q Consensus 344 ----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~~~~----- 412 (476)
+..+..+++.++++++.++.+ ++..++.+++.+++.+.|.++ ........ ...+. ++.+.+....
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFLDELE-NSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECCCCCT-TEECCCSSEEEEESCCGGGSCC
T ss_pred ccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccccCCCC-CCcceeEEEEEEecchhhcccc
Confidence 011124667777766655544 346778888888888888765 22110000 00122 3455553110
Q ss_pred CcCchhhccc---chHHHHHHHHHHHHCCeEeccCCCc------------------------ceEE--eCCCcHHHHHHH
Q 011856 413 VYNFEDAKKS---ETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHT 463 (476)
Q Consensus 413 ~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~~~~~~~~------------------------~~~~--~~~~t~e~i~~~ 463 (476)
..++..+..+ ......++.+.|.++||.++++..+ .+++ ...+|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~ 376 (394)
T 1o69_A 297 CQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEI 376 (394)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHH
Confidence 0000000000 0123467888999999999876321 0111 234799999999
Q ss_pred HHHHHHHHHH
Q 011856 464 ITAAEKVKMR 473 (476)
Q Consensus 464 ~~~l~~~~~~ 473 (476)
+++|++++..
T Consensus 377 ~~~l~~~~~~ 386 (394)
T 1o69_A 377 SKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999988753
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=186.61 Aligned_cols=275 Identities=13% Similarity=0.028 Sum_probs=181.1
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCC
Q 011856 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPK 219 (476)
Q Consensus 143 ~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~ 219 (476)
+|++.+++++ +.++.++++||++|+..+++.. ..++++|++.++.||+....... ..|.
T Consensus 2 ~l~~~la~~~-g~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--------------- 63 (331)
T 1pff_A 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV--------------- 63 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC---------------
T ss_pred hHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC---------------
Confidence 3555555555 4457788888999999999953 34567899998888885443321 1222
Q ss_pred CCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCccccccc
Q 011856 220 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGG 298 (476)
Q Consensus 220 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~g~~~ 298 (476)
++..++..|++++++.+++ ++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+.....
T Consensus 64 ----~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~- 131 (331)
T 1pff_A 64 ----EVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP- 131 (331)
T ss_dssp ----EEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-
T ss_pred ----EEEEeCCCCHHHHHHhhcC---CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh-
Confidence 2444555688899988863 6889999999999999998 9999999999 9999999999963311111
Q ss_pred hhhccCCCCchhhhhhhcCC-CCc-EEEEEecH-HHHHhhcCCCCcccc-CCCCCcHHHHHHHHHHHHHhcCCCHHHHHH
Q 011856 299 AQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~-G~~-iG~~~~~~-~i~~~l~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (476)
. .++....+.+++|.+++ |.| +|++++++ ++++.+.+. ... .+.+.+++.+.++.++++.+. ...++..
T Consensus 132 -~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 204 (331)
T 1pff_A 132 -L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQG---IKDITGAIISPHDAWLITRGTLTLD--MRVKRAA 204 (331)
T ss_dssp -G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred -h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHH---HHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHH
Confidence 1 23433333479999984 788 79999998 898888742 233 345678888888777776442 2334445
Q ss_pred HHHHHHHHHHHHHh----------hhcCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 375 KITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 375 ~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
++.+.+.+.|++.. .+.+.. ...++.|.++.+.+.+ ...+.+.|.++||+
T Consensus 205 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCc
Confidence 55555555554421 001100 0113457787877631 13566777888997
Q ss_pred eccCC------------------------------CcceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 441 FAPSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 441 ~~~~~------------------------------~~~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
+.+.. ...+|++ ..+++++++.++++|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 64321 2346664 567889999888888754
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=194.72 Aligned_cols=306 Identities=17% Similarity=0.128 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.+.+..+. +..+.+...++.+.+++++ +.+++++++||++|++.+++.+. ..+++.|++.+++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~-~~~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYC-GVKHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHHHH
Confidence 4778888888887643 2235777888999999888 55699999999999999999642 4566789998888888644
Q ss_pred hHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
.+ ...|..+...+.. ....+ |+++|++.+++ ++++|+++ +++|.+.+ +++|.++
T Consensus 112 ~~-~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~~~~---~~~~v~~~---n~tG~~~~----~~~i~~l 166 (391)
T 3dr4_A 112 SV-TYCGATPVLVDNDPRTFNL--------------DAAKLEALITP---RTKAIMPV---HLYGQICD----MDPILEV 166 (391)
T ss_dssp HH-HHTTCEEEEECBCTTTCSB--------------CGGGSGGGCCT---TEEEECCB---CGGGCCCC----HHHHHHH
T ss_pred HH-HHCCCEEEEEecCccccCc--------------CHHHHHHhcCC---CceEEEEE---CCCCChhh----HHHHHHH
Confidence 33 3344433222111 00010 77888887763 67777743 35677777 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcC---CCC-----
Q 011856 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGP----- 340 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~---~~~----- 340 (476)
|++||++||+||+|+ |. ..+. ..+..+|++++| |++++| ++|+++++ +++++.+.. .+.
T Consensus 167 ~~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 240 (391)
T 3dr4_A 167 ARRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRR 240 (391)
T ss_dssp HHHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTST
T ss_pred HHHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 999999999999996 33 2221 233345777655 999764 68888765 456655431 110
Q ss_pred ---ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-----eeeeceeEEEEEecCC
Q 011856 341 ---MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-----GGYISGMFGFFFTEGP 412 (476)
Q Consensus 341 ---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----v~~~g~~~~i~~~~~~ 412 (476)
...+..+..+++.+++++..++.+ ++..++.+++.+++++.|.++ ...++.. ....+.++++.+....
T Consensus 241 ~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (391)
T 3dr4_A 241 YWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL 316 (391)
T ss_dssp TCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC
T ss_pred ccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCcc
Confidence 001122456677776666655433 457778888888888888765 2221111 1223334566654210
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc------------------------ceEEe--CCCcHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------------------------~~~~~--~~~t~e~i~~~~~~ 466 (476)
.....++.+.|.++||.++++..+ .++++ ..+|++||++++++
T Consensus 317 -----------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~ 385 (391)
T 3dr4_A 317 -----------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAA 385 (391)
T ss_dssp -----------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHH
Confidence 011357889999999999876311 23443 56799999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 386 l~~~l 390 (391)
T 3dr4_A 386 LDQVL 390 (391)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98754
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=190.06 Aligned_cols=307 Identities=11% Similarity=0.010 Sum_probs=197.0
Q ss_pred CcHHHHHHHHHHHHhcC--C-CCCC--CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 116 ADDQVLAALGETMKKGT--S-FGAP--CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~--~-~~~~--~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
.+|++.+++.+.+.+.. . +.++ .+...++.++++++++ ..+++++++||++|+..+++ .+.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~---~l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ---NCVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH---HHCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH---hccCC-cEEEEc
Confidence 47899999988887643 1 1112 1456788888888885 35789999999999999999 44455 777776
Q ss_pred CCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 189 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 189 ~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
..+++.... .....|..+...+...... -|+++|+ + .+++++|+++++++++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKG--------------FYPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCC--------------CCGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCC--------------CCHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 666652221 2223343332211111111 1677776 2 236788888888888999998
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCC---
Q 011856 268 FLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--- 340 (476)
Q Consensus 268 ~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~--- 340 (476)
+++|.++|++| |+++|+||+|... ... +.. ..|++ +++|.++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~--~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~ 220 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWT--KIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRK 220 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTT--SCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccCCccc-----Chh--HCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCC
Confidence 99999999999 9999999999632 111 001 15665 577999843346888899998776652100
Q ss_pred ---cc------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH-hhhcCCceEeeeec
Q 011856 341 ---MY------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA-GKKAGHAICGGYIS 401 (476)
Q Consensus 341 ---~~------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~v~~~g 401 (476)
.+ ....++.+..++.+..++++.+.+ ++..++.+++.+++.+.|+++ ......+......+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 300 (362)
T 3ffr_A 221 SIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSM 300 (362)
T ss_dssp CCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCS
T ss_pred CCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCC
Confidence 00 001345677777777788876543 456666777777777777654 11110000001234
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
.++++.+.+ ...++.+.|.++||.+.++. ...+|++ ..++++++++++++|++++
T Consensus 301 ~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 301 TTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 555665532 13678889999999998752 3457886 4569999999999998764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=186.55 Aligned_cols=287 Identities=16% Similarity=0.075 Sum_probs=187.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+++++++++++ .+..++++||++|+..+++.. ...+++||+.++.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g-~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG-AESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 56778889999998884 457788888999999999842 3356788888888877433211000
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
...+.++..++.+|+++|++.++. ++ ++|++|+++|++|.+.+ +++|.++|++||++||+||+|+...
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~~-- 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATPL-- 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT--
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc--
Confidence 001124566777799999999985 45 89999999999999988 9999999999999999999995321
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
. .......+|++ +++|.+++ | +++|++++++++++.+.... ...+ ...+++.+..++..++.+ ....+
T Consensus 244 -~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~--~~~g-~~~~~~~a~~~~~~l~~l--~~r~~ 315 (445)
T 1qgn_A 244 -N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILG-GALNPNAAYLIIRGMKTL--HLRVQ 315 (445)
T ss_dssp -T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHC-CCCCHHHHHHHHHHGGGH--HHHHH
T ss_pred -c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH--HHhC-CCCCHHHHHHHHHhHHHH--HHHHH
Confidence 1 11233457877 58999995 3 47999999999988775211 1112 234677666665555433 22344
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cC-Cc---------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 372 YLNKITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~-~~---------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+..++.+++.+.|++... . ++ .. .++++.|.++.|++... ......+...|...
T Consensus 316 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~------------~~~~~~~l~~l~~~ 383 (445)
T 1qgn_A 316 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD------------LLTTAKFVDALKIP 383 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC------------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC------------HHHHHHHHHhCCCc
Confidence 555566677777765310 0 11 00 01235788999988531 12234455554323
Q ss_pred CeEeccCC---------------------------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 438 GVYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 438 Gv~~~~~~---------------------------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++.++.++ ...+|+++. .||+|.+++.|++++++
T Consensus 384 ~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 384 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDS 444 (445)
T ss_dssp EECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHH
T ss_pred eEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhh
Confidence 33322221 134677766 46899999999999875
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=187.08 Aligned_cols=281 Identities=16% Similarity=0.101 Sum_probs=184.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~ 213 (476)
..+...+++++++++++ .+..++++||++|++.+++.. ..+++.||+....||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g-~~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG-GKAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhC-CCceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 55677888888888884 456788888999999999953 4567889999999988655442 22222
Q ss_pred CCCCCCCCCCceeec-cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 214 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..+ +.+|+++|++.+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 35556 66689999999874 6899999999999999998 999999999999999999999545
Q ss_pred -cccccchhhccCCCCchh--hhhhhcCC-CCcEEEEEec---HHH----HHhhcCCCCccc------------------
Q 011856 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR---RDI----MEMVAPAGPMYQ------------------ 343 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~---~~i----~~~l~~~~~~~~------------------ 343 (476)
..+.. ++..+|++ +++|.+++ |.|+|++++. +++ ++.+.+.....+
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 32222 23457887 78999995 7889888663 122 222321100000
Q ss_pred -----cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-------------------ee
Q 011856 344 -----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 399 (476)
Q Consensus 344 -----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-------------------~~ 399 (476)
......+++.+++++..++.+. ...++..++.+++.+.|.+. +.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 0113567888777777765432 23445556666777666653 222222 46
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------------------------CcceEEe
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS 452 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~~~~~ 452 (476)
.|.++.|++.+. ......+...+...++.++.++ ...+|++
T Consensus 336 ~g~ivsf~l~~~------------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKGG------------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETTH------------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCCC------------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 788999998531 1223444444433343332221 1234565
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 011856 453 LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~ 471 (476)
+. .+++|.+++.|++++
T Consensus 404 ~g--~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 VG--LEHVEDLKAELKEAL 420 (421)
T ss_dssp CC--SSCHHHHHHHHHHHT
T ss_pred eC--CCCHHHHHHHHHHHh
Confidence 44 468889999888875
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=181.67 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++.+...++++.+++++ +.+++++++||++|++.+++ . ...+++||+..+.||+.........
T Consensus 52 ~~~~~~~~lr~~la~~~-g~~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 114 (393)
T 1n8p_A 52 SQNPNRENLERAVAALE-NAQYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA------------- 114 (393)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS-------------
T ss_pred CCChhHHHHHHHHHHHh-CCCcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH-------------
Confidence 35566778888888888 44578888889999999998 2 3456789998888887432211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccC
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTG 291 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g 291 (476)
...+.++..++.+| ++|++.++. ++++|++++++|++|.+.+ +++|.++|++| |++||+||+|++
T Consensus 115 ---~~~G~~v~~v~~~d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 115 ---NAHGVETSFTNDLL-NDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ---TTTCSCCEEESSHH-HHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ---HHcCcEEEEeCCCh-HHHHHhccc---CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 00112355666667 889988863 6899999999999999998 99999999999 999999999976
Q ss_pred c-cccccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 292 F-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
+ .. ... .+ .+|++ +++|.+++ |+|+ |+++++ +++++.+... ........++..+.++.++++.+
T Consensus 184 ~~~~-~~~---~~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~---~~~~g~~~~~~~~~~~~~~l~~~- 253 (393)
T 1n8p_A 184 PYIS-NPL---NF--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL---QNAIGAIPSPFDAWLTHRGLKTL- 253 (393)
T ss_dssp HHHC-CGG---GG--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH-
T ss_pred cccC-CHH---Hc--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhccchH-
Confidence 5 32 211 12 35766 79999994 8898 888885 7888877531 11111234677777666666432
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011856 366 EPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~ 386 (476)
+...++..++.+.+.+.|++
T Consensus 254 -~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 254 -HLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp -HHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHHHHh
Confidence 23344555556666665554
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=181.72 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++++ .+..++++||++|+..+++ . ...+++|++.++.|++..........
T Consensus 64 ~~~p~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~------------ 127 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDG-AKYCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS------------ 127 (403)
T ss_dssp --CHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH------------
Confidence 456667788888888874 3466777789999999987 2 45667899999999875432211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~ 294 (476)
..+.++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|.++..
T Consensus 128 ----~~G~~v~~v~~~d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 128 ----EFGLKISFVDCSKIKLLEAAITP---ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp ----GGTCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred ----HcCCEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 01124666777799999999863 6889999999999999998 999999999999 99999999975521
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
.. .++..+|++ +++|.+++ | +++|+++++ +++++.+.. .....+...+++.+.+++.+++.+ +..
T Consensus 197 ~~-----~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r 266 (403)
T 3cog_A 197 QR-----PLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVR 266 (403)
T ss_dssp CC-----TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred CC-----ccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHH
Confidence 11 122346776 79999984 4 689999985 788877752 222234456888888877777533 223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIID 386 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~ 386 (476)
.++..++...+.+.|++
T Consensus 267 ~~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455555555555544
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-19 Score=176.42 Aligned_cols=304 Identities=14% Similarity=0.105 Sum_probs=193.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH-----hccCCceEEEEeCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 190 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar-----~~~~~~~ii~~~~~ 190 (476)
-+|++.+++.++++++. .++.+...++.+.+++++ +.+++++++||++|++.+++.++ ...++++|++...+
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTF-GSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 37899999999988742 335677788888888888 45589999999999999999652 13456789998889
Q ss_pred CCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
||+....+ ...|..+...+.....+. -|+++|++.+++ ++++|++.+. .|...+ ++
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~~---~g~~~~----~~ 145 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINTLN-------------IDIESLKEAVTD---STKAILTVNL---LGNPNN----FD 145 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTTCS-------------BCHHHHHHHCCT---TEEEEEEECG---GGCCCC----HH
T ss_pred cHHHHHHH-HHcCCEEEEEecCccccC-------------cCHHHHHHHhCc---CCeEEEEECC---ccChhh----HH
Confidence 88865543 334443322111100000 189999999864 5777777532 344455 99
Q ss_pred HHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhhhhcC----CCCcEEEEEecH-HHHHhhc---CCC--
Q 011856 271 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG-- 339 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~sK~lg----~G~~iG~~~~~~-~i~~~l~---~~~-- 339 (476)
+|.++|++||++||+||+|+ |... ....+|..+|+.++||..+ +| +.|++++++ ++.+.+. ..+
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~ 220 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWT 220 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBS
T ss_pred HHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 4421 1234567778888775443 23 358888875 6655432 111
Q ss_pred -C------------------cc----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 340 -P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 340 -~------------------~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
. .+ .+.++..+++.++++++.|+.++ +..++.+++.+++.+.|+++. ++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~~---~~~~~ 295 (390)
T 3b8x_A 221 RNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDHP---YLDVQ 295 (390)
T ss_dssp TTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCS---SEEEC
T ss_pred ccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCC---CcccC
Confidence 0 00 11223377888888888887653 567777788888887776531 11100
Q ss_pred ee-eece--eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------C-c-------------------
Q 011856 397 GG-YISG--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F-E------------------- 447 (476)
Q Consensus 397 v~-~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~-~------------------- 447 (476)
.. .... .+.+.+.... .....++.+.|.++||.+++.. . +
T Consensus 296 ~~~~~~~~~~~~i~~~~~~-----------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (390)
T 3b8x_A 296 QETGESSWFGFSFIIKKDS-----------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL 364 (390)
T ss_dssp CCCSBCCCCEEEEEECTTS-----------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH
T ss_pred CCCCCcccEEEEEEecCcC-----------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH
Confidence 00 1222 2444443110 0012568888999999887621 1 1
Q ss_pred ---ceEEe--CCCcHHHHHHHHHHH
Q 011856 448 ---AGFTS--LAHSSDDIQHTITAA 467 (476)
Q Consensus 448 ---~~~~~--~~~t~e~i~~~~~~l 467 (476)
.++++ ..+|++|++++++.|
T Consensus 365 ~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 365 DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13454 567999999999876
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=178.63 Aligned_cols=313 Identities=13% Similarity=0.117 Sum_probs=190.5
Q ss_pred cHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 117 DDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~--~~---~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
+|++.+++.++++++.. ++ +..++..++++.+++++ +.+.+++++||++|++.+++.++ ...++.|++..++|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~~~i~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~ 92 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVPYCVPTTSGSTALMLALEALG-IGEGDEVIVPSLTW 92 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCcc
Confidence 68999999999987421 21 12345788889998887 45578899999999999999531 34567888888888
Q ss_pred CCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
++.... +...|..+...+.....+ .-|+++|++.+++ ++++|++++ ++|...+ +++
T Consensus 93 ~~~~~~-~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~~ 148 (418)
T 2c81_A 93 IATATA-VLNVNALPVFVDVEADTY-------------CIDPQLIKSAITD---KTKAIIPVH---LFGSMAN----MDE 148 (418)
T ss_dssp THHHHH-HHHTTCEEEEECBCTTTC-------------SBCHHHHGGGCCT---TEEEECCBC---CTTCCCC----HHH
T ss_pred HhHHHH-HHHcCCEEEEEecCCCCC-------------CcCHHHHHHhhCC---CCeEEEEeC---CcCCccc----HHH
Confidence 886543 334444332222110000 0178999888863 577777654 4576666 999
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch--hhh--hhhcCCCCcEEEEEec-HHHHHhhcC---CCC--
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTL--GKIIGGGLPVGAYGGR-RDIMEMVAP---AGP-- 340 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi--~t~--sK~lg~G~~iG~~~~~-~~i~~~l~~---~~~-- 340 (476)
|.++|++||++||+||+|+.+ .... ...+..+|+ .+| +|.+++| ++|+++++ +++++.+.. .+.
T Consensus 149 i~~~~~~~~~~li~D~a~~~~~~~~~----~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNN----QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETT----EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHCCCEEEEECcccccCccCC----EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 999999999999999999765 2211 112222344 466 8999987 99999984 777666542 110
Q ss_pred ---------ccc--c---CCC----CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec-
Q 011856 341 ---------MYQ--A---GTL----SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS- 401 (476)
Q Consensus 341 ---------~~~--~---~t~----~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g- 401 (476)
.+. . ... ..+++.++.+...++.+ ++..++.+++.+++.+.|.++. ++.......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~ 298 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKID---GIKVMKRPPQV 298 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTST---TEEECCCCTTE
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCC---CcccCCCCCCC
Confidence 011 0 111 12344433333333222 3455666666666666665420 1111111122
Q ss_pred ---e--eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeE---eccCCC--------------------------
Q 011856 402 ---G--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY---FAPSQF-------------------------- 446 (476)
Q Consensus 402 ---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---~~~~~~-------------------------- 446 (476)
. ++.+.+.+.... .....++.+.|.++ ||. +.++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (418)
T 2c81_A 299 SRQTYYGYVFRFDPVKFG---------GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAY 369 (418)
T ss_dssp EECCCSEEEEEECGGGTT---------TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHH
T ss_pred cccccEEEEEEEcccccc---------ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccc
Confidence 2 233444320000 01135788899998 999 765421
Q ss_pred --------------cceEEe--CCC-cHHHHHHHHHHHHHHHHHh
Q 011856 447 --------------EAGFTS--LAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 --------------~~~~~~--~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
..++++ ..+ |++|+++++++|+++++++
T Consensus 370 ~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 370 WRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 135665 456 9999999999999988753
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=177.05 Aligned_cols=310 Identities=14% Similarity=0.067 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-------cCC----ceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------TGR----ERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-------~~~----~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
+.+.++.++++++++ ..+.++|++|||+|+..+++.+|.. .+. +..|+.....|.....++...|.+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCC
Confidence 556778888998885 3578999999999999999988642 121 2144455555666665555544421
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (476)
. +++.+|.+ |+++|++.+++. +..+++|+++..++++|.+.| +++|.++|++
T Consensus 228 ~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 228 D----------------SVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp G----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred C----------------cEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 0 12222221 799999999741 224788888888788899988 9999999999
Q ss_pred hCCEEEEeccccCc-cccccchhhccCC-CCchhhh--hhhcCCCCcEEEEEecHH--HHHhhcC-CCCcc---------
Q 011856 279 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRRD--IMEMVAP-AGPMY--------- 342 (476)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t~--sK~lg~G~~iG~~~~~~~--i~~~l~~-~~~~~--------- 342 (476)
||++||+|++|+++ .....+.....++ .+|++++ +|.+++++++|+++++++ +++.... .....
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999877 4433222223344 5788764 899987778999988766 6554211 00111
Q ss_pred --ccCCC------CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc
Q 011856 343 --QAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (476)
Q Consensus 343 --~~~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (476)
..+++ ....+.+.++++++....-+++.++..++.+++.+.|+++. .+.+.. ......+.+.+......
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~--~~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVM--EPEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESS--CCSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeC--CCCeeEEEEEEeCcccc
Confidence 00111 11244444555554321114566777788888888877641 111111 11123333333211000
Q ss_pred Cchhhcccc-hH----HHHHHHHHHHHCCeEecc-----CCCcceEEeC---CCcHHHHHHHHHHHHHHHHH
Q 011856 415 NFEDAKKSE-TT----KFARFYRGMLEEGVYFAP-----SQFEAGFTSL---AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 415 ~~~~~~~~~-~~----~~~~~~~~l~~~Gv~~~~-----~~~~~~~~~~---~~t~e~i~~~~~~l~~~~~~ 473 (476)
.... ..+ .. ....+.+.|.++|+.+.. .....+|+++ .+|++|+++++++|++++++
T Consensus 445 ~~~~--~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 445 GKQE--SPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp TCTT--STTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cccc--chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000 000 00 122467788888975422 1123567765 37999999999999988765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=177.81 Aligned_cols=316 Identities=13% Similarity=0.047 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhc-------cC----CceEEEEeCCCCCCchhHHhhcCC
Q 011856 139 LLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPFLVKAGS 204 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~-------~~----~~~ii~~~~~yhg~~~~~~~~~g~ 204 (476)
+++.++.++++++++ . .+.++|++|||+|+..+++.+|.. .+ ++.+|+.....|......+...|.
T Consensus 132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence 456777788888875 3 568999999999999999988642 22 132444455556655555544443
Q ss_pred CCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 205 GVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
+.. +++.+|.+ |+++|++.+++. +..+++|++...++++|.+.+ +++|.++|
T Consensus 212 g~~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 212 GTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp CGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred Ccc----------------cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 210 12222222 899999999741 224778888777777898888 99999999
Q ss_pred HHhCCEEEEeccccCc-cccccchhhccCC-CCchhhh--hhhcCCCCcEEEEEecH-HHHHhh-cCCCCcccc-CC---
Q 011856 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRR-DIMEMV-APAGPMYQA-GT--- 346 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t~--sK~lg~G~~iG~~~~~~-~i~~~l-~~~~~~~~~-~t--- 346 (476)
++||++|++|++|.++ .....+.....++ .+|++++ +|.+++++++|++++++ ++++.. ......... +.
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999876 3322111222233 5687765 59988778899998876 465542 211111111 11
Q ss_pred -------------CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 347 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 347 -------------~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
...+.+.+.++++++..-.-++..++..++.+++.+.|++. ..+.+.........++.+.+.....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccc
Confidence 01245666666666542111455666777777777777653 1111111001234444444321110
Q ss_pred cCchh--h-cccchHHHHHHHHHHHHCCe-EeccC---CC-cceEEeCC---CcHHHHHHHHHHHHHHHHHhh
Q 011856 414 YNFED--A-KKSETTKFARFYRGMLEEGV-YFAPS---QF-EAGFTSLA---HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 414 ~~~~~--~-~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~-~~~~~~~~---~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..... . .........++.+.|.++|+ ++.+. +. ..+|+++. +|++||++++++|++++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~ 503 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 503 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC--
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 00000 0 00000123567888899995 44322 11 35677654 799999999999999887653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=176.33 Aligned_cols=296 Identities=13% Similarity=0.044 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH-HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~~~sGs-eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
+.+.++.++++++++....++|++||+ .++..++..++...+++.||+.+. .|......+...|..+...+.....
T Consensus 133 ~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~~~~~~~G~~~~~v~~~~~~-- 209 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDG-- 209 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEET--
T ss_pred HHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHcCCCceEEEEeccC--
Confidence 355678889999886222399999999 567667776544334455666665 5555555555555543321110000
Q ss_pred CCCCCCceeeccCCCHHHHHHHH-hcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 218 PKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+... .|+++|++.+ +.. .+++.+|++...++++|.+.| +++|.++|++||+++++||+|.++..|
T Consensus 210 ------~~~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~g 276 (456)
T 2z67_A 210 ------DRVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNY 276 (456)
T ss_dssp ------TEEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred ------CCCC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHHH
Confidence 0011 2899999999 420 125666666555567899988 999999999999999999999755221
Q ss_pred c-cchhhccCCCCchh--hhhhhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CC
Q 011856 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PG 368 (476)
Q Consensus 296 ~-~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 368 (476)
. ......+...+|++ +++|.+++++++|++++ ++++++.+.+ .+.+.. ++++ ..++.+++..+.. ++
T Consensus 277 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~-~~~~--~~~~~aal~~l~~~~~~~ 350 (456)
T 2z67_A 277 YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRA-SATP--VVNTLVSLLSMGSKNYLE 350 (456)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCB-CSHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCC-CCCH--HHHHHHHHHHHHHHHHHH
Confidence 1 11111111156766 46898887889999998 5778877753 222222 2232 2233333433322 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe---Eec---
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA--- 442 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~~~--- 442 (476)
..++..++.+++.+.|+++....+... .... .++.+.+..+ +. ..++.+.|.++|+ -+.
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~-~~v~~~~~~~-----------~~--~~~l~~~L~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE-SPIASCISVN-----------SD--PVEIAAKLYNLRVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC-CSSEEEEECS-----------SC--HHHHHHHHHHTTEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCEe-cCCC-CeEEEEEecc-----------cH--HHHHHHHHHHcCCCcceEEeec
Confidence 678888899999999988632122111 1112 4445554211 10 2467788888885 232
Q ss_pred ---------cCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 443 ---------PSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 443 ---------~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
......++++ ..+|++|+|+++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 1112345665 3479999999999998754
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=184.98 Aligned_cols=277 Identities=11% Similarity=0.015 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHhhCC--CC-CeEEEeCCHHHHHHHHHHHHHhccCCc----eEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 138 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~--~~-e~v~~~~sGseA~~~al~~ar~~~~~~----~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
.++++++++++...-. .. ++|++++|+++++..+++.. ..+++ .|++.+++|.++. ..+...|..+.
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~--- 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYV-EETTYVRSGMY--- 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHH-HHHHTTCBTTE---
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHH-HHHHHcCCeEE---
Confidence 3455556665542211 24 69999999999999999853 23445 7888888887643 33333333221
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 288 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (476)
.++. |.+.++ . +++++|++...+|++|.+.+ +|.+ ++|+ +++|+||+
T Consensus 145 ----------------~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 145 ----------------KWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ----------------EEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECT
T ss_pred ----------------EecC-CHHHcC----C--CCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCC
Confidence 1111 112222 1 25666655555667787764 2333 2255 99999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 365 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 365 (476)
|.. ....... ...+....+.+|||.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+...
T Consensus 194 y~~-~~~~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYW-PHYTPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCS-TTTSCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 962 1100111 11121122337999998 7999999987 8899888763 2222345778999999999887542
Q ss_pred ---------C--CCHHHHHHHHHHHHHHHHHHHhhhcCCc----e-------EeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 366 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA----I-------CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 366 ---------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~-------~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
+ ++.+++++++.+++.+.|+++ ....+. . ..+..|.++++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 334455555556666655543 101010 0 0123455677776421
Q ss_pred hHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..+.+.|.++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 234566778999998863 3468999888999999999999887653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=182.61 Aligned_cols=288 Identities=11% Similarity=-0.022 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
+.....++.+++++ ++..+.+++++|+++|+..+++.+ ..+++.|++..++|++. ...+...|..+...+......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~-~~~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSV-LHALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHH-HHHHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHH-HHHHHHcCCeEEEEeCeeccc
Confidence 44556677788888 753467899999999999999953 34556777777766654 444445555433221100000
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (476)
. .....+ |+++| +. +++++|++++ .+++|.+.+ +++|.++|++||++||+||+|++. +.+
T Consensus 131 ~-----~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T-----NHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T-----SSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c-----CcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 000111 34444 22 2566777776 455888888 999999999999999999999753 322
Q ss_pred ccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH--hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC--C-
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G- 368 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~--~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~- 368 (476)
.. ........+|++ +++|.++++.++|++++++++++ .+.. ......+.+.+...+++..++++.++.. +
T Consensus 192 ~~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~ 268 (446)
T 2x3l_A 192 GF-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQTSSPSYLIMASLESAAQFYKTYDSTL 268 (446)
T ss_dssp TS-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHH
T ss_pred CC-CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 21 111122236776 46698887677999999887654 2221 0112234455677776666677766542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+...
T Consensus 269 ~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~~ 326 (446)
T 2x3l_A 269 FFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDYQ 326 (446)
T ss_dssp HHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSSC
T ss_pred HHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCCE
Confidence 566666666666555 2211111123344554421 012567888999999998444456
Q ss_pred eEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. +|++++ +++++|++++++
T Consensus 327 iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 327 ALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp EEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 777544 599999 999999988754
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=173.36 Aligned_cols=287 Identities=14% Similarity=0.065 Sum_probs=179.9
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
++++|.+++.++... ...+.|+.....++++++++.+ +.+...+ ++||++|+..+++. ....++.|++
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~-g~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~ 112 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVF-GAEAGLVRPQIISGTHAISTALFG--ILRPGDELLY 112 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHT-TCSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHh-CCCcccccceeeCHHHHHHHHHHH--hCCCCCEEEE
Confidence 467888888775321 1234567788899999999998 4444443 56999999999983 2334567777
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc-cCCCCC
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP-VVGNSG 260 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G 260 (476)
.++..|+.+...+..++.. .......+..+..++. .|+++|++.+++ ++++|++++ .++.+|
T Consensus 113 ~~~~~y~~~~~~~~l~g~~---------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 113 ITGKPYDTLEEIVGVRGKG---------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CSSSCCTTHHHHTTSSSCS---------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred eCCCCchhHHHHHhhcccc---------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 7645555555444332210 0111112223455554 289999999973 688999996 333444
Q ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC--CcEEEEEecHHHHHhh
Q 011856 261 FIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMV 335 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G--~~iG~~~~~~~i~~~l 335 (476)
... +.+.+++|.++|++ ||++||+||+|.++ ...... .++.+..+.+++|.+++| .+.|++++++++++.+
T Consensus 181 ~~~-~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSF-TISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCC-CHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcC-CHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 433 44459999999999 99999999999766 332221 224333334799999974 5779999999998887
Q ss_pred cCCC-CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCceEeeeeceeEEEEEecCCC
Q 011856 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
.... ....+.+.+.++..+.+++..++.+ +...++..++..++.+.|+++..+. +. ...++.+.++.+.+.
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~---- 329 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD---- 329 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC----
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC----
Confidence 5310 1111222222222233344455433 4567788889999999998875422 11 122345557777773
Q ss_pred cCchhhcccchHHHHHHHHHHHHC
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+.+...++++.|.+.
T Consensus 330 ---------~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 330 ---------DKDRMIAFCQAIQYA 344 (431)
T ss_dssp ---------CHHHHHHHHHHHHHT
T ss_pred ---------CHHHHHHHHHHHHhc
Confidence 234567888888876
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=175.52 Aligned_cols=307 Identities=9% Similarity=-0.017 Sum_probs=184.9
Q ss_pred CcHHHHHHHHHHHHhc----C-CCC----C--CCHHHHHHHHHHHhhCCC--CCeEEEeCCH-HHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKG----T-SFG----A--PCLLENVLAEMVISAVPS--IEMVRFVNSG-TEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~----~-~~~----~--~~~~~~~la~~l~~~~~~--~e~v~~~~sG-seA~~~al~~ar~~~~~ 181 (476)
.++.|++++.+.+++. . .++ + ..+...+++++++++++. .+++++++|+ ++|+..++.......++
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~ 93 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI 93 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence 6899999999887642 0 010 1 123467888899888752 3589999988 99999998742111122
Q ss_pred ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH-HHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~G 260 (476)
.++|+.....|.. .......| .+...+.....+ +.|+++|++ .++ +++++|+++++++++|
T Consensus 94 g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-------------~~d~~~l~~~~i~---~~~k~v~~~~~~nptG 155 (360)
T 1w23_A 94 GNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-------------YQSIPDFSEFQLN---ENDAYLHITSNNTIYG 155 (360)
T ss_dssp EEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-------------SCSCCCGGGCCCC---TTEEEEEEESEETTTT
T ss_pred ccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-------------cCCccchHhhccC---CCCCEEEEeCCCCCcc
Confidence 3344432222211 11122223 222111100000 125666766 553 3688888888888889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
.+.+ + + +++||++||+||+|..+ ..-. ...+ |++ +++|.++.. ++|++++++++++.+.+
T Consensus 156 ~~~~--~-i------~~~~~~~li~D~a~~~~~~~~~---~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 156 TQYQ--N-F------PEINHAPLIADMSSDILSRPLK---VNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp EECS--S-C------CCCCSSCEEEECTTTTTSSCCC---GGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred eecc--c-c------cccCCceEEEechhhcCCCCcC---cccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 8865 2 2 23899999999999754 2211 1111 555 578999831 38999999998877653
Q ss_pred CCCcc--------ccCC-CCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe--e-ee-
Q 011856 338 AGPMY--------QAGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--G-YI- 400 (476)
Q Consensus 338 ~~~~~--------~~~t-~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~-~~- 400 (476)
..+.. ...+ .+.+..++.++.++++.+.+ ++..++++++.+++.+.|+++. ++.... + ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~ 295 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN---GFYVGHAEKGSRS 295 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT---TSSEESSCGGGBC
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc---CcccccCCchhcc
Confidence 21111 1112 23466667777778876543 3456666777777777776542 121111 2 12
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. ++++++++++++|++++++
T Consensus 296 ~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 296 LMNVTFNLR-------------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SSEEEEECS-------------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcC-------------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 447777652 11234567888999999998764 246788755 6999999999999998764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=170.07 Aligned_cols=323 Identities=11% Similarity=-0.012 Sum_probs=192.5
Q ss_pred CcHHHHHHHHHHHHhcC-CCC-CC--CHHHHHHHHHHHhhCC-CCC-----eEEEeCCHHHHHHHHHHHHHhc-------
Q 011856 116 ADDQVLAALGETMKKGT-SFG-AP--CLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 178 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~-~~~-~~--~~~~~~la~~l~~~~~-~~e-----~v~~~~sGseA~~~al~~ar~~------- 178 (476)
.+|.+.+++.+.+.... .+. ++ .+++.++.++++++++ ..+ .+++++||+||+..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888776521 111 22 3557788888999886 333 4899999999999999876531
Q ss_pred cC----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
.+ ++.||+.+ .|..+...+...|..+..++.....+. -|+++|++.+++ ++++|++..
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCe-------------ECHHHHHHHHhh---CCEEEEEEc
Confidence 22 34666655 676655555555654433222110010 189999999974 567777776
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--ccccchhhccCC-CCchhh--hhhhcCCCCcE
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTT--LGKIIGGGLPV 322 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~i 322 (476)
.++++|.+.+ +++|.++|++| |+++++|++|.++ . ........ +.. ..|+++ ..|.+.+|+++
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~ 270 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGC 270 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCe
Confidence 6677899988 99999999996 9999999999875 2 11111010 111 246554 45966678999
Q ss_pred EEEEecHH-HH-HhhcCCCCcccc---------CCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 323 GAYGGRRD-IM-EMVAPAGPMYQA---------GTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 323 G~~~~~~~-i~-~~l~~~~~~~~~---------~t~~~-~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|+++++++ ++ +.+... +.+.. ++... ..+++.+++..+..-.-++..++..++.+++.+.|+++.
T Consensus 271 G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-- 347 (452)
T 2dgk_A 271 GWVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG-- 347 (452)
T ss_dssp EEEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred EEEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 99988643 33 443211 11111 11111 233334444333210014456666777777777776531
Q ss_pred cCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc----CC---CcceEEe--CCCcH
Q 011856 391 AGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTS--LAHSS 457 (476)
Q Consensus 391 ~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~~---~~~~~~~--~~~t~ 457 (476)
++....+ ....++.+.+..... +.....++.+.|.++|+.+.. .. ...+|++ ..+|+
T Consensus 348 -~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 348 -PYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEM 417 (452)
T ss_dssp -SEEEEEECCTTTBSSEEEEEECTTCC---------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred -CeEEecCCCCCCCeEEEEEEecCccc---------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence 1211112 234566665532110 000125688899999996542 21 2246675 34589
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+|++++++.|+++++++
T Consensus 418 e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 418 DFAELLLEDYKASLKYL 434 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=171.15 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
++++...+|.+++++++ +.+.+++++||++|+..+++.. ...++.|++.++.|++..... +...|.
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~-------- 147 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLT-GALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPSFGI-------- 147 (430)
T ss_dssp -CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHHcCC--------
Confidence 46788889999999988 5567888999999999999853 445678888888887754322 111121
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..++.+|+++|++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+||+|+..
T Consensus 148 -----------~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~ 209 (430)
T 3ri6_A 148 -----------EVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP 209 (430)
T ss_dssp -----------EEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred -----------EEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3566777799999999864 6899999999999999988 999999999999999999999521
Q ss_pred cccccchhhccCCCCchhhhhhhcCC-CCcEEEE-Ee--cHHH------------------HHhhcCCCCccccCCCCCc
Q 011856 293 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAY-GG--RRDI------------------MEMVAPAGPMYQAGTLSGN 350 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t~sK~lg~-G~~iG~~-~~--~~~i------------------~~~l~~~~~~~~~~t~~~~ 350 (476)
.......+|.+..+.+++|.+++ |..+|++ +. +..+ ++.++. ..........+
T Consensus 210 ---~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~--~~~~~~g~~~~ 284 (430)
T 3ri6_A 210 ---YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARK--EVFQNLGPSLS 284 (430)
T ss_dssp ---TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHH--THHHHHCCCCC
T ss_pred ---ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHH--HHHHhcCCCCC
Confidence 11122234543334478999986 4444444 52 2111 222211 00011112346
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-----------------eece-eEEEEEecCC
Q 011856 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGP 412 (476)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-----------------~~g~-~~~i~~~~~~ 412 (476)
+..+..++..++.+. ...++..++..++.+.|++ ++.+..|. +.|. |++|++.+
T Consensus 285 ~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~----~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-- 356 (430)
T 3ri6_A 285 PHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLS----IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-- 356 (430)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT----CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred HHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhC----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--
Confidence 777766666666542 3445566666667666654 33333222 3466 99999852
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---------------------------ceEEeCCCcHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------------~~~~~~~~t~e~i~~~~~ 465 (476)
.....+|.+.+...++.+..++.. .+|++.. -|+.+.+++
T Consensus 357 -----------~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--~E~~~dl~~ 423 (430)
T 3ri6_A 357 -----------KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--IEEIEDLKE 423 (430)
T ss_dssp -----------HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--SSCHHHHHH
T ss_pred -----------HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHH
Confidence 233456666665555544444322 2344433 466777788
Q ss_pred HHHHHH
Q 011856 466 AAEKVK 471 (476)
Q Consensus 466 ~l~~~~ 471 (476)
.|++++
T Consensus 424 dl~~al 429 (430)
T 3ri6_A 424 DILQAL 429 (430)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=166.54 Aligned_cols=304 Identities=12% Similarity=0.008 Sum_probs=186.5
Q ss_pred CcHHHHHHHHHHHHhcC---------CCCCC--CHHHHHHHHHHHhhCCC-CC-eE-EEeCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVPS-IE-MV-RFVNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~---------~~~~~--~~~~~~la~~l~~~~~~-~e-~v-~~~~sGseA~~~al~~ar~~~~~ 181 (476)
.+|+|++++.+.+.+.. ...++ .+...+++++++++++- .+ ++ ++++||++|+..+++.. ..++
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 68999999998875420 11111 23567889999998863 32 64 67799999999999842 3455
Q ss_pred ceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 182 ERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 182 ~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
++|++.+..+++.. ...+...| .+...+... ..+.. .|.++++ ++ +++++|++.++++.
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~------------~~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTL------------PKLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSC------------CCGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccC------------CCHHHcc--cC---CCcCEEEEeCCcCc
Confidence 67877776655532 12233334 433222110 01100 0333332 32 36788888777777
Q ss_pred CCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecHHHHHh
Q 011856 259 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 259 ~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~~i~~~ 334 (476)
+|.+ .+ +++| ||+++|+||+|.-+.. ..... .. |++ +++|.+| .| +|++++++++++.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLVAE 216 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGSSS
T ss_pred cceeccc----cccc------CCCEEEEEChhhccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHHhh
Confidence 8885 54 4444 8999999999963211 01111 12 654 6899998 35 8999999998776
Q ss_pred hcCCCCccc---------cCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEe---
Q 011856 335 VAPAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGH-AICG--- 397 (476)
Q Consensus 335 l~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v--- 397 (476)
+.+..+.+. ...++.++.++.++.++|+.+.+ ++..++.+++.+++.+.|+++. ++ ....
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~ 293 (362)
T 2c0r_A 217 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG---GFYRGCVDVD 293 (362)
T ss_dssp CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSSEESSCGG
T ss_pred ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC---CccccCCChH
Confidence 653211111 12346678888888899987643 3456666677777777776542 02 1100
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
...+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. ++++|++++++.|++++++
T Consensus 294 ~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 294 SRSDMNITFRLA-------------SEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp GBCSSEEEEECS-------------CHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcC-------------CcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 112344455442 12234678888999999887653 235788765 4899999999999998765
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=173.58 Aligned_cols=316 Identities=17% Similarity=0.122 Sum_probs=186.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCC-CCCe---EEEeCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVP-SIEM---VRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-------~----~~~~~~la~~l~~~~~-~~e~---v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|.|.+|+.+.+.+....++ . .+++.++.++++++++ ..+. .++.+||++|+..+++.. ..+
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~al--l~p 133 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL--VEP 133 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--TCT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHh--cCC
Confidence 589999999988876321111 1 2445566688888886 3332 245566779998888742 456
Q ss_pred CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc------CCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
+++|++.+..|.++..........++. ..|. ....+.++ .-|+++|++.+++. ++++|++ .
T Consensus 134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~------~~G~----~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~-~ 200 (483)
T 1rv3_A 134 HGRIMGLDLPDGGHLTHGFMTDKKKIS------ATSI----FFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA-G 200 (483)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSCBCS------HHHH----HSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE-C
T ss_pred CCEEEEecCccCcCcchhhhhcccCcc------cccc----eEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE-e
Confidence 678888877766643211000000000 0000 00111111 12899999999742 5677777 5
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~ 330 (476)
..+++ .+.+ +++|+++|++||++||+|++|. |+ ..+..- ..++ ..|++ +++|+|+ |+|.|+++++++
T Consensus 201 ~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p~~-~~div~~s~~K~l~-GprgG~i~~~~~ 271 (483)
T 1rv3_A 201 TSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SPFE-HCHVVTTTTHKTLR-GCRAGMIFYRRG 271 (483)
T ss_dssp CSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CGGG-TCSEEEEESSGGGC-CCSCEEEEEECS
T ss_pred CCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CCCC-CCcEEEecCcccCC-CCCceEEEEcch
Confidence 44445 6667 9999999999999999999984 55 322110 0011 24766 5679995 678899988874
Q ss_pred ---------------HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 331 ---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 331 ---------------i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+.+.+... .+.+...+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+. +
T Consensus 272 ~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 345 (483)
T 1rv3_A 272 VRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL----G 345 (483)
T ss_dssp BCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred hhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 33333210 00111112344455555567776643 456777888888888888765 2
Q ss_pred CceEeeee-ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec----cCC-----CcceEEeCCC--c----
Q 011856 393 HAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-----FEAGFTSLAH--S---- 456 (476)
Q Consensus 393 ~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~-----~~~~~~~~~~--t---- 456 (476)
+.....+. ..++++.+..... ...++.+.|.+.||.+. |+. ...+|+++.. |
T Consensus 346 ~~~~~~~~~~~~~~v~~~~~g~------------~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~ 413 (483)
T 1rv3_A 346 YKIVTGGSDNHLILVDLRSKGT------------DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 413 (483)
T ss_dssp CEEGGGSCSSSEEEEEGGGGTC------------CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred CEeccCCCCCceEEEeccCCCC------------CHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCC
Confidence 21111111 2345555532100 12456677888999998 643 2357776542 5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVKMR 473 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~ 473 (476)
++|+++++++|++++..
T Consensus 414 ~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 414 EKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=168.61 Aligned_cols=313 Identities=15% Similarity=0.055 Sum_probs=176.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHhhCCC-CC---eEEEeCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVPS-IE---MVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-----------~~~~~~~la~~l~~~~~~-~e---~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|+|.+|+.+.+.+....++ ..+++....++++++++. .+ ..++++||++||..++... ..+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al--~~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH--cCC
Confidence 489999999988765221121 134444555888888852 22 2456679999999999842 334
Q ss_pred CceEEEEeCCCCCCchh-------HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 181 RERIIKFEGCYHGHADP-------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
++.|++.+..|.|+... .+...|.......++.... . -..|+++|++.++++ ++++|+++
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~--------~---~~iD~d~le~~l~~~--~~klIi~~ 210 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK--------T---GLIDYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CEECCC-------------------------------CCBCTT--------T---CSBCHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc--------c---CCcCHHHHHHHHhhc--CCcEEEEc
Confidence 56666666555332110 1112222111111110000 0 022899999998743 34566664
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~ 329 (476)
...+ |...+ +++|+++|++||++|++|++| .|+ ..|... ..+. ..|++ |++|+|+ |.+.|++++++
T Consensus 211 ~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~-Gp~GG~i~~~~ 280 (490)
T 2a7v_A 211 TSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLR-GARSGLIFYRK 280 (490)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGC-SCSCEEEEEEC
T ss_pred CCCC--CCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCc-cccchheeecc
Confidence 3221 33455 999999999999999999998 455 333211 1111 24665 6889996 56789988876
Q ss_pred H---------------HHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 330 D---------------IMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 330 ~---------------i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+ +.+.++. ....++. +.++..+++..+++..+.. +++.+++.++.++|.+.|.+.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~i~~---~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~ 357 (490)
T 2a7v_A 281 GVKAVDPKTGREIPYTFEDRINF---AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS 357 (490)
T ss_dssp SEEEEETTTEEEEECCCHHHHHH---HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred chhcccccccchhhHHHHHHHHH---HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 4 3344431 1111122 2344445554556655533 567788889999999999875221
Q ss_pred cCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC----C-----CcceEEe------CC
Q 011856 391 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFTS------LA 454 (476)
Q Consensus 391 ~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~-----~~~~~~~------~~ 454 (476)
+. ..+ ...++++.+..... ...++.+.|.+.||.+... . ...+|+. ..
T Consensus 358 --v~--~~~t~t~lv~vdl~~~g~------------~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 358 --LV--SGGTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp --EG--GGSCSSSEEEEECTTTTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred --Ee--cCCCCCeEEEEEeCCCCC------------CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 11 111 23456666532110 1245677888899998742 1 2346762 35
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~ 472 (476)
++++|++++++.|.+++.
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999998875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=169.46 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+++++++++. +.+.+++++||++|+..+++. ....+++||+.+..|++..........
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~i~~ssGt~Ai~~al~~--l~~~Gd~Vi~~~~~y~~~~~~~~~~l~------------ 143 (415)
T 2fq6_A 79 RGTLTHFSLQQAMCELE-GGAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEPSQDFCSKILS------------ 143 (415)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHT--TCCTTCEEEEETTSCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH------------
Confidence 35677888999998887 456788889999999999983 123567888888888774322211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCcc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR 293 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r 293 (476)
..+.++..++.+|+++|+++++. ++++|++|.++|++|.+.+ +++|.++|++ ||++||+|++|....
T Consensus 144 ----~~G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~ 212 (415)
T 2fq6_A 144 ----KLGVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415)
T ss_dssp ----GGTCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred ----HcCcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 00113555666789999988863 6899999999999999998 9999999999 999999999995221
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC-CC-cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-GL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~-G~-~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
... .+....|++ +++|.+++ |. .+|++++++++++.+.... ...++ ..++..+..++..++.+ +..
T Consensus 213 ~~~-----p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~-~~~~~~a~~~~~~l~~l--~~r 282 (415)
T 2fq6_A 213 LFK-----ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQ-MVDADTAYITSRGLRTL--GVR 282 (415)
T ss_dssp SSC-----GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTC-CCCHHHHHHHHHHHHHH--HHH
T ss_pred cCC-----ccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCC-CCCHHHHHHHHhhhhHH--HHH
Confidence 111 112235766 68999995 44 4799999988877765211 11222 34566666666666544 334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIIDA 387 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~ 387 (476)
.++..++...+.+.|++.
T Consensus 283 ~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 283 LRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 555666777777777654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=161.75 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l-~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (476)
.++++.+++.+.++.+. ++...+...+|.+.+ +++++..+++++++||++|+..+++.. ....++.||+....|.+.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 46788999999998864 222256678899999 888842788999999999999999842 244567888888877764
Q ss_pred chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
...+...|..+...+.....+ .-|++++++.+.....++++|+. + +..|...+ +++|.+
T Consensus 92 -~~~~~~~G~~~~~v~~~~~~~-------------~~d~~~l~~~i~~~~~~tk~v~~--~-~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 -PLAAIWCGLEPYFIDISIDDW-------------YMDKTVLWDKIEELKEEVAIVVP--Y-ATFGSWMN----LEEYEE 150 (377)
T ss_dssp -HHHHHHTTCEEEEECBCTTTC-------------SBCHHHHHHHHHHHGGGEEEECC--B-CGGGBCCC----CHHHHH
T ss_pred -HHHHHHcCCEEEEEecCCccC-------------CcCHHHHHHHHhcCCCCceEEEE--E-CCCCCccC----HHHHHH
Confidence 344444454333222110000 01899999988321112777763 3 23577777 889999
Q ss_pred HHHHhCCEEEEecccc-Cccccccchhhcc-CCCCchhhh----hhhcCCCCcEEEEEe-cHHHHHhhcC---CCC----
Q 011856 275 ITKENGALLIFDEVMT-GFRLAYGGAQEYF-GVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP---- 340 (476)
Q Consensus 275 l~~~~g~llI~DEv~~-g~r~g~~~~~~~~-g~~pDi~t~----sK~lg~G~~iG~~~~-~~~i~~~l~~---~~~---- 340 (476)
+|+ ||++||+|++|+ |... ..... +...|+.++ +|.+++| ..|+++. ++++.+.++. .+.
T Consensus 151 la~-~~~~vi~D~a~a~g~~~----~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN----GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE----TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred HHh-cCCEEEEECCCccCCeE----CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 999 999999999995 2211 11122 112355544 3999875 5777765 5666665542 110
Q ss_pred --ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCceEe--eeeceeEEEEEecCCCcC
Q 011856 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG--GYISGMFGFFFTEGPVYN 415 (476)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v--~~~g~~~~i~~~~~~~~~ 415 (476)
...+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- ....... .....++.+.+.+
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE----- 297 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-----
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-----
Confidence 011224456788877777777644 456777888888888888775210 1111000 0111122333221
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEe--CCCcHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
....+++.+.|.++||.++..... .++++ ...|++|++++++.|+
T Consensus 298 --------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~ 369 (377)
T 3ju7_A 298 --------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLG 369 (377)
T ss_dssp --------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHH
Confidence 111367889999999987654311 12454 4669999999999998
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++..
T Consensus 370 ~~~~~ 374 (377)
T 3ju7_A 370 QKVVS 374 (377)
T ss_dssp C----
T ss_pred HHHhc
Confidence 87653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=175.25 Aligned_cols=316 Identities=10% Similarity=-0.026 Sum_probs=189.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHH-hcC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCeEEEeC
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMK-KGT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFVN 162 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~-~~~-~--~~----~---~~~~~~~la~~l~~~~~---~~e~v~~~~ 162 (476)
..+..+||..+.. .++ .++.+.+++.+.+. .+. . |. + ..+++.++++++.+... .+++|++++
T Consensus 54 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 54 IQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp CTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 3456788877632 222 35677778877663 222 1 21 1 24556666666654331 468999999
Q ss_pred CHHHHHHHHHHHHHh------ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 163 SGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 163 sGseA~~~al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
|+++++..+++.... ...++.|++.++.|.++. ..+...|..+. .+. .|+++|
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~~~-------------------~~~-~d~~~l 189 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR-EQTKYFDKKGY-------------------VWA-GNAANY 189 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH-HHHHHSCBTTE-------------------EEE-EEGGGG
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH-HHHHHcCCeee-------------------eec-CCHHHH
Confidence 999999999984200 234567777777776533 33333333211 111 156777
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGK 314 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK 314 (476)
++.++. ++++|++...+|++|.+.+ +.+ + ++..|.||.+.+ ...... . +....+++ +|||
T Consensus 190 ~~~~~~---~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-~~~s~~--~-~~~~~~i~~~S~SK 251 (427)
T 2hox_A 190 VNVSNP---EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-PHYTPI--K-YKADEDILLFTMSK 251 (427)
T ss_dssp TTCSCG---GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-TTTSCC--C-SCBCCSEEEEEHHH
T ss_pred HHhhcC---CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-CCCCcc--c-cCCCceEEEEeChh
Confidence 766653 4566666555666777776 322 2 566777877642 100001 1 11112333 7999
Q ss_pred hcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---------CCCH----HHHHHHHHHH
Q 011856 315 IIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPGT----YEYLNKITGE 379 (476)
Q Consensus 315 ~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~----~~~~~~~~~~ 379 (476)
.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+... .+++ +++++++.++
T Consensus 252 ~~g~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
T 2hox_A 252 FTGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328 (427)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 998 7999999999 5899888763 2233456778889988888887531 1333 3445555555
Q ss_pred HHHHHHHH-hhhc-----C-----CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--
Q 011856 380 LTQGIIDA-GKKA-----G-----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-- 445 (476)
Q Consensus 380 l~~~L~~~-~~~~-----~-----~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-- 445 (476)
+.+.|++. .... + +....+..|.++++.+..+ ..++++.|+ ++||.+.++.
T Consensus 329 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f 393 (427)
T 2hox_A 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGF 393 (427)
T ss_dssp HHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCcc
Confidence 55555442 1111 0 0111233477788877421 124556655 7899998863
Q ss_pred ---CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 446 ---FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 446 ---~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...+|+++..+++++++++++|+++++
T Consensus 394 ~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 394 EASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp TSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 346899988899999999999998875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=165.87 Aligned_cols=281 Identities=15% Similarity=0.139 Sum_probs=174.6
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
|+.+|.+++.+.... ...++|+.....+|.+.+++++ +.+..++ ++||++|+..+++.. ...++.|++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~al--l~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF-KTEAALVRPQIISGTHAISTVLFGI--LRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTSCSHHHHHHHHHHHH--CCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh-CCCcEEEECCCccHHHHHHHHHHHh--cCCCCEEEE
Confidence 457788888775321 1235567777888999998888 5566666 899999999999842 345567777
Q ss_pred Ee-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cC
Q 011856 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VV 256 (476)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~ 256 (476)
.+ +.|.+. ...+...|... ......+..+..++. .|++++++.++. ++++|++++ ++
T Consensus 107 ~~~~~y~~~-~~~~~~~g~~~---------~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 107 ITGQPYDTL-EEIVGIRKQGQ---------GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYAD 173 (409)
T ss_dssp CSSSCCTTH-HHHHTSSSSSS---------SCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSS
T ss_pred eCCCCcHhH-HHHHhcccchh---------hHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCC
Confidence 76 555543 22221111000 000001112333333 389999999863 689999998 88
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCC--CcEEEEEecH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR 329 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~~ 329 (476)
+++|.+.+ +++|.++|++ ||+++|+||+|..+ .... ......|++ +++|.++++ ...|++++++
T Consensus 174 nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~-----p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~ 244 (409)
T 3jzl_A 174 RPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQE-----PPEVGADIIAGSLIKNPGGGLAKTGGYIAGKE 244 (409)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCC-----SGGGTCSEEEEETTSGGGTTTCSSCEEEEECH
T ss_pred CCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCC-----ccccCCeEEEECccccCCccCCceEEEEEeCH
Confidence 88888877 9999999999 99999999999643 1111 112234665 799999964 3468889999
Q ss_pred HHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEE
Q 011856 330 DIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF 406 (476)
Q Consensus 330 ~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i 406 (476)
++++.+.. ..+.. ..+.+..+..+.+++..++.+ +..+++..++..++.+.|+++..+. .+. .-++...++.+
T Consensus 245 ~li~~l~~~~~~~~~-g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 245 ALVDLCGYRLTTPGI-GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEE
T ss_pred HHHHHHHHHhccccc-cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEE
Confidence 99988863 11111 112222221133344444433 4567788888889999888764321 010 00122236666
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
.+. +.+...+|++.|.+..
T Consensus 321 ~l~-------------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 321 SFH-------------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp ECS-------------CHHHHHHHHHHHHHTS
T ss_pred EeC-------------CHHHHHHHHHHHHhcC
Confidence 663 3455678888888874
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-16 Score=159.38 Aligned_cols=323 Identities=11% Similarity=0.002 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCCCC-----------CeEEEeCCHHHHHHHHHHHHHhcc----
Q 011856 119 QVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT---- 179 (476)
Q Consensus 119 ~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~~~-----------e~v~~~~sGseA~~~al~~ar~~~---- 179 (476)
.+.+.+...+.... .+.. ..+++.++.+++++.++-+ ...+|++|||+||..++..+|...
T Consensus 94 ~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~ 173 (481)
T 4e1o_A 94 LLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEM 173 (481)
T ss_dssp HHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHh
Confidence 44555555555422 2211 2367778888888876422 267999999999999999887531
Q ss_pred ------------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---C
Q 011856 180 ------------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---K 244 (476)
Q Consensus 180 ------------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~ 244 (476)
.++.+|+.....|.+...++...|..+..++...... -|+++|++.|++. +
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~Le~~i~~~~~~g 239 (481)
T 4e1o_A 174 KTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFS--------------LRGEALQKAIEEDKQRG 239 (481)
T ss_dssp HHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSC--------------CCHHHHHHHHHHHHHTT
T ss_pred hhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCc--------------CCHHHHHHHHHHHHhCC
Confidence 1344666666677666666655565443322211111 1899999999742 1
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGL 320 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~ 320 (476)
..+.+|++....+++|.+.| +++|.++|++||++|++|++|.+. .....+.....|+ ..|.++ ..|.+++..
T Consensus 240 ~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~ 315 (481)
T 4e1o_A 240 LVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF 315 (481)
T ss_dssp CEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC
Confidence 12555666666677888888 999999999999999999999764 3222111111233 246664 579998656
Q ss_pred cEEEEEecH-HHHH-hhcCCCCcccc----------------CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRR-DIME-MVAPAGPMYQA----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 321 ~iG~~~~~~-~i~~-~l~~~~~~~~~----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
..|+++.++ +.+. .+.. ...+.. .+.....+.+.+++..+..-.-++..++..++.+++.+
T Consensus 316 g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 394 (481)
T 4e1o_A 316 DCTGFWVKDKYKLQQTFSV-NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFES 394 (481)
T ss_dssp SCEEEEESBHHHHHTTTCC-CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcC-CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678876654 4433 2221 111111 01112344445554444211115667777888888888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe-EeccC---CCcceEEe---CCC
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV-YFAPS---QFEAGFTS---LAH 455 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~~~~~~~---~~~ 455 (476)
.|+++. .+.+. ......++.+.+.. ......++.+.|.++|+ ++.+. +...+|++ ...
T Consensus 395 ~L~~~~-g~~~~--~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~t 459 (481)
T 4e1o_A 395 LVRNDP-SFEIP--AKRHLGLVVFRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFT 459 (481)
T ss_dssp HHHTCT-TEECC--SCCCSSEEEEEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTC
T ss_pred HHhcCC-CeEEe--cCCceeEEEEEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCC
Confidence 887641 11111 12233445555421 12334678888988884 43432 22346775 334
Q ss_pred cHHHHHHHHHHHHHHHHHhh
Q 011856 456 SSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~~ 475 (476)
|++||++++++|+++.++++
T Consensus 460 t~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 460 TRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988765
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=161.51 Aligned_cols=325 Identities=12% Similarity=0.000 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHHHhc--c--
Q 011856 118 DQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAF--T-- 179 (476)
Q Consensus 118 p~v~~a~~~~l~~~~-~~~-~--~~~~~~~la~~l~~~~~~~----------e~v~~~~sGseA~~~al~~ar~~--~-- 179 (476)
..+.+++...+.... .+. . ..+++.+++++++++++-. ..++|++|||+|+..++..+|.. .
T Consensus 88 ~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~ 167 (486)
T 1js3_A 88 AMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL 167 (486)
T ss_dssp HHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhh
Confidence 346666766664422 111 1 2366677888888887521 35899999999999999877542 1
Q ss_pred ----CC-------ce-EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---
Q 011856 180 ----GR-------ER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--- 244 (476)
Q Consensus 180 ----~~-------~~-ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--- 244 (476)
+. ++ +|+.....|.....++...|..+..++... .+. -|+++|++.+++..
T Consensus 168 ~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~-~~~-------------~d~~~L~~~i~~~~~~g 233 (486)
T 1js3_A 168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG-KFA-------------MRASALQEALERDKAAG 233 (486)
T ss_dssp HHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT-TSC-------------CCHHHHHHHHHHHHHTT
T ss_pred hccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCC-CCC-------------CCHHHHHHHHHHHHhCC
Confidence 21 23 344444555555555555565544332211 110 18999999997421
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGL 320 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~ 320 (476)
....+|++...++++|.+.+ +++|.++|++||++|++|++|.++ .....+.....++ ..|.++ .+|.++..+
T Consensus 234 ~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~ 309 (486)
T 1js3_A 234 LIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF 309 (486)
T ss_dssp CEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc
Confidence 11235555555567888888 999999999999999999999765 2221111101122 246554 679998768
Q ss_pred cEEEEEecHH-H-HHhhcCCCCcccc-----------------CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRRD-I-MEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 321 ~iG~~~~~~~-i-~~~l~~~~~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
++|+++.+++ . .+.+......... .+.....+.+.+++..+..-.-++..++..++.+++.
T Consensus 310 ~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~ 389 (486)
T 1js3_A 310 DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFE 389 (486)
T ss_dssp SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8999988654 3 4544211111000 0111234444444444321111456677777888888
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec-cC---CCcceEEeCC---
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA-PS---QFEAGFTSLA--- 454 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~~~~~~~~~~--- 454 (476)
+.|++.. ++.......+.++.+.+.. ......++.+.|.++|+++. +. +...+|+++.
T Consensus 390 ~~L~~~~---~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 390 AFVLQDP---RFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHHCT---TEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHhcCC---CeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 8887631 1111111234455554421 11223678888888886543 22 2235677643
Q ss_pred CcHHHHHHHHHHHHHHHHHhh
Q 011856 455 HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.|++|+++++++|+++++++.
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999887653
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-16 Score=159.49 Aligned_cols=304 Identities=10% Similarity=0.014 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHHHhcc-------C---------CceEEEEeCCC
Q 011856 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 191 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------e~v~~~~sGseA~~~al~~ar~~~-------~---------~~~ii~~~~~y 191 (476)
.+++.++.+++++.++-+ ...+|++|||+||..|+..+|... + ++.+|+.....
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 467778888888888522 268999999999999999886431 1 23456666667
Q ss_pred CCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHH
Q 011856 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
|.+...++...|..+..++.... + -|+++|++.|++. +..+.+|++....++.|.+.|
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~-~--------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENH-R--------------MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTT-B--------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCCC-C--------------cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 76666666666654433322111 1 1899999999752 112455666655666888888
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH-HH-HhhcCCCCcc
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGPMY 342 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~-i~-~~l~~~~~~~ 342 (476)
+++|.++|++||+++++|++|.+. .....+.....++ ..|.++ ..|.+++...+|+++.+++ .+ +.+.....+.
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 999999999999999999999754 2221111111132 346664 5799987667888866543 32 2222110110
Q ss_pred cc---------C--CC-CC---cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 343 QA---------G--TL-SG---NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 343 ~~---------~--t~-~~---~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
.. . +. .+ ..+.+.+++..+..-.-+++.++..++.+++.+.|+++. ++....+....++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~l~~~~~~~iv~f~ 409 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADS---RFELAAEINMGLVCFR 409 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TEEESSCCBTTEEEEE
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEEE
Confidence 00 0 00 11 133333444333211115677778888888888887741 1111112234455555
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEe-ccC---CCcceEEeCC---CcHHHHHHHHHHHHHHHHHhh
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSLA---HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~-~~~---~~~~~~~~~~---~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+.. +.....++.+.|.++|.++ .+. +...+|+++. .|++||++++++|+++.++++
T Consensus 410 ~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 410 LKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp ESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 431 1233467888898888644 332 2335677643 589999999999999988764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-16 Score=159.21 Aligned_cols=321 Identities=12% Similarity=-0.008 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhcCC-C-CC--CCHHHHHHHHHHHhhCC-C--CC---eEEEeCCHHHHHHHHHHHHHhc-c-----
Q 011856 116 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF-T----- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-~-~~--~~~~~~~la~~l~~~~~-~--~e---~v~~~~sGseA~~~al~~ar~~-~----- 179 (476)
.+|.+.+++.+.+..... + .+ ..+++.++.++++++++ . .+ ...+++||++|+..++..++.. .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 588999999887765321 1 11 23566688888998885 2 22 3356999999999998865432 0
Q ss_pred -C----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 180 -G----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 180 -~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
| +..|++.+ ..|......+...|..+..++.....+. -|+++|++.+++ ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~-~~h~s~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGA-NVQVCWEKFARYFEVELKEVKLSEGYYV-------------MDPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEET-TCCHHHHHHHHHTTCEEEEECCBTTBCS-------------CCHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcC-CchHHHHHHHHHcCceeEEEecCCCcCc-------------CCHHHHHHHHhh---CCEEEEEec
Confidence 2 12555544 4455455555555554333222111010 189999999874 567777666
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--ccccchhhccC-CCCchh--hhhhhcCCCCcE
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFG-VTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g-~~pDi~--t~sK~lg~G~~i 322 (476)
.++++|.+.+ +++|.++|++| |++|++|++|.|+ . ....... .+. ...|++ +..|.+.++.++
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~-~~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc-ccCCCCceEEEECcccccCCCCCe
Confidence 6667789988 99999999999 9999999999765 2 1111110 011 123555 456877777889
Q ss_pred EEEEec-HHHH-HhhcCCCCccccC-------CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 323 GAYGGR-RDIM-EMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 323 G~~~~~-~~i~-~~l~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|+++.+ ++.+ +.+... ..+..+ .++.+.....+..+++..+.. .+..++..++.+++.+.|+++
T Consensus 286 G~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 361 (502)
T 3hbx_A 286 GWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT--- 361 (502)
T ss_dssp EEEEESSGGGSCGGGCEE-ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEeCHHHhhHHhccC-cccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 988665 4443 222110 011100 112222233333444443322 455667777777888777764
Q ss_pred cCCceEee--eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEe--CCCcHHH
Q 011856 391 AGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDD 459 (476)
Q Consensus 391 ~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~--~~~t~e~ 459 (476)
+....+. ....++.+.+..... ....++.+.|.++|+++..... ..+|++ ..+|+++
T Consensus 362 -~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed 429 (502)
T 3hbx_A 362 -ERFNIVSKDEGVPLVAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTL 429 (502)
T ss_dssp -TCEEECSCSSSSSEEEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred -CCEEEEeCCCCceEEEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence 2111111 244566666643210 1124788899999998753321 245664 5679999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
++.+++.|+++++++
T Consensus 430 id~li~~L~~~l~~l 444 (502)
T 3hbx_A 430 AERLVIDIEKVMREL 444 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=156.71 Aligned_cols=336 Identities=13% Similarity=0.029 Sum_probs=192.5
Q ss_pred cHHH-HHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhcc-------C-
Q 011856 117 DDQV-LAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G- 180 (476)
Q Consensus 117 ~p~v-~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~~-------~- 180 (476)
++.+ .+++.+.+.... .+.. ..+++.+++++++++++ . .+.++|++||++|+..++..++... +
T Consensus 108 ~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 108 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 4444 455665655422 1211 13566778888888875 2 4689999999999999999876521 1
Q ss_pred ---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEE
Q 011856 181 ---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAA 249 (476)
Q Consensus 181 ---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~ 249 (476)
++.+|+.....|.....++...|.+.. .+..+|.+ |+++|++.|++. +..+++
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~----------------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~ 251 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 251 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCC----------------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEE
Confidence 344566666677666666666554221 11122211 899999999742 123778
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchh--hhhhhcCCCCcEEEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~--t~sK~lg~G~~iG~~ 325 (476)
|+++..++++|.+.+ +++|.++|++||++|++|++|.+. .....+.....|+ ..|++ +.+|.+++.+..|++
T Consensus 252 vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 252 VNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred EEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 888888888999988 999999999999999999999754 3221111111122 34665 467999866668888
Q ss_pred EecH-HHHHhhcCCCCccccC------------------CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011856 326 GGRR-DIMEMVAPAGPMYQAG------------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 326 ~~~~-~i~~~l~~~~~~~~~~------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (476)
+.++ ++++......+.+... +.....+.+.+++..+..-.-+++.++..++.+++++.|++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~ 407 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 407 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 4554432111111100 00123444444444432111156777888888888888875
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchh---hcccchHHHHHHHHHHHHCCeEeccC---C--CcceEEe---CCC
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFED---AKKSETTKFARFYRGMLEEGVYFAPS---Q--FEAGFTS---LAH 455 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Gv~~~~~---~--~~~~~~~---~~~ 455 (476)
. ..+.+.........++.+.+.......... ..........++.+.|+++|+++... . ...+|++ ..+
T Consensus 408 ~-pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~ 486 (511)
T 3vp6_A 408 R-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAA 486 (511)
T ss_dssp C-TTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTC
T ss_pred C-CCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCC
Confidence 3 111111100123444455443211100000 00000112346888899999654321 1 1246664 456
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~ 473 (476)
+++||+.+++.|++.-+.
T Consensus 487 t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 487 TQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999987654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-17 Score=161.46 Aligned_cols=302 Identities=9% Similarity=-0.051 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHHHh--cCCCCCC--CHHHHHHHHHHHhhCC-C-CCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 116 ADDQVLAALGETMKK--GTSFGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~--~~~~~~~--~~~~~~la~~l~~~~~-~-~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
.+|+|.+++.+.... +....++ .+...++.++++++++ . .++++| ++||++|++.+++. +.+++ ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~---l~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFG---LIDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHH---TCSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHH---hcCCC-eEEEe
Confidence 578999988763111 1011122 2346789999999986 3 358998 99999999999994 33444 33335
Q ss_pred CCCCCCchh-HHhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 189 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 189 ~~yhg~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
..+|+.... ..... |..+...+.+ .+.. .+. .+. +++++|++..+++++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~------------~~~-----~i~---~~~~~v~~~~~~nptG~~~~- 183 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSA------------PEP-----QTD---PSVDVIAWAHNETSTGVAVA- 183 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC------------CCC-----CCC---TTCSEEEEESEETTTTEECC-
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCC------------CCc-----ccc---CCCCEEEEeCcCCCcceecc-
Confidence 555543211 11222 2222211111 1110 011 022 35677877777788999988
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCC----
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 338 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~---- 338 (476)
+++|.++ +|++||+||+|+.+ ..- ... .+|++ +++|.++++.++|++++++++++.+...
T Consensus 184 ---~~~i~~~---~~~~vivD~a~~~~~~~~---~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 184 ---VRRPEGS---DDALVVIDATSGAGGLPV---DIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ---CCCCTTC---C-CEEEEECTTTTTTSCC---CGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ---hHHhhhh---cCCeEEEEeccccCCccc---Ccc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 4445555 89999999999754 221 111 25666 5779998543599999999988776310
Q ss_pred ---CCcc-----------ccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe--e
Q 011856 339 ---GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--G 398 (476)
Q Consensus 339 ---~~~~-----------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~ 398 (476)
.+.. .....+.+..+++++.++|+.+.+ ++..++.+++.+++.+.|+++. ++.... +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~ 327 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP---YTTPFVTDP 327 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST---TEEESCCSG
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC---CceeccCCh
Confidence 0000 011234566677777788876543 3456667777777777776641 211111 1
Q ss_pred -eece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHHHHHH
Q 011856 399 -YISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKV 470 (476)
Q Consensus 399 -~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~l~~~ 470 (476)
+.+. ++++.+... ....++.+.|.++||.+.++. ...+|+++. +|++|+++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDD-------------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp GGBCSSEEEEEECTT-------------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCC-------------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1234 777776321 012578889999999998642 245788765 6999999999999998
Q ss_pred HHH
Q 011856 471 KMR 473 (476)
Q Consensus 471 ~~~ 473 (476)
+++
T Consensus 395 l~~ 397 (398)
T 2fyf_A 395 VER 397 (398)
T ss_dssp HHT
T ss_pred HHh
Confidence 865
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=159.22 Aligned_cols=283 Identities=16% Similarity=0.119 Sum_probs=174.4
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
++++|.+|+.+.... ...++|+.....+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~-g~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF-NTESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh-CCCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 458888888775322 1235566667788889998888 5666677 89999999999884 2445677777
Q ss_pred Ee-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHhcCCCCeEEEEEcc----cCC
Q 011856 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 257 (476)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (476)
.+ +.|++.. ... .+... + ........+..+..++. .|+++|+++++++ +++++|++++ +++
T Consensus 122 ~~~~~y~~~~-~~~--g~~~~-----~-~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLH-DII--GMDDS-----K-KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGH-HHH--TCCTT-----C-CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHH-HHh--ccccc-----h-hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 77 6666532 111 00000 0 00000111223444444 4899999999842 2689999999 777
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCC--CcEEEEEecHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRRD 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~~~ 330 (476)
++|.+.+ +++|+++|++ ||++||+||+|..+ ..... .....|++ |++|.++++ .+.|+++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEP-----TDVGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG-----GGGTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCC-----cccCCeEEEECCcccccccccceEEEEEECHH
Confidence 7888766 9999999999 89999999999643 12111 11224665 799999964 45788899999
Q ss_pred HHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEEE
Q 011856 331 IMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFF 407 (476)
Q Consensus 331 i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~ 407 (476)
+++.++.. .+.. +.+.+.++..+..++..++.+ +...++..++..++.+.|++...+. .+. .-++...++.+.
T Consensus 263 li~~l~~~~~~~~~-g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V-~p~~~~~~~~li~~~~ 338 (427)
T 3hvy_A 263 YVTQATFRVTVPGI-GGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFDV-LPKYNDKRTDIIQAIK 338 (427)
T ss_dssp HHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSEEEEE
T ss_pred HHHHHHHHhhcCCc-ccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCee-cCCCCCCCceEEEEEe
Confidence 99888631 1111 111122122133344444332 4577788888888988888764211 010 001122266666
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+. +.+...+|++.|...
T Consensus 339 l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 339 FN-------------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp CS-------------SHHHHHHHHHHHHHT
T ss_pred CC-------------CHHHHHHHHHHhccc
Confidence 63 334567788888775
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-16 Score=156.09 Aligned_cols=278 Identities=16% Similarity=0.130 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHHH--h----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 117 DDQVLAALGETMK--K----GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 117 ~p~v~~a~~~~l~--~----~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
.++|.+|+.+... . ...++|+.....+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.|++.
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~pGD~Vl~~ 121 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF-NTESALVRPHFVNGTHALGAALFG--NLRPGNTMLSV 121 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--HCCTTCEEEES
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeCCCccHHHHHHHHHHH--HhCCCCEEEEe
Confidence 4678888776421 1 1235566777788889999888 5565566 89999999999884 23456677777
Q ss_pred e-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cCC
Q 011856 188 E-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVG 257 (476)
Q Consensus 188 ~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (476)
+ +.|++.. ..+...+... .......+..+..++. .|+++|++.++++ +++++|++++ +++
T Consensus 122 ~~~~y~~~~-~~~g~~~~~~--------~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~n 191 (427)
T 3i16_A 122 CGEPYDTLH-DVIGITENSN--------MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWR 191 (427)
T ss_dssp SSSCCGGGH-HHHTCSCCCS--------SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSS
T ss_pred CCCccHHHH-HHHhccccch--------HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCC
Confidence 6 5665532 1110000000 0000111122334443 3899999999842 3689999998 777
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRD 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~ 330 (476)
++|.+.+ +++|.++|++ ||+++|+||+|..+ ...... .++ .|++ +++|.+++ | .+.|+++++++
T Consensus 192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence 7888876 9999999999 99999999999644 121111 123 4655 79999996 4 46799999999
Q ss_pred HHHhhcC--CCCccccCCCCCcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec-----e
Q 011856 331 IMEMVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-----G 402 (476)
Q Consensus 331 i~~~l~~--~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-----~ 402 (476)
+++.++. ..+. .+...+ ..+. +..++..++.+ +...++..++..++.+.|+++..+ . .++.. .
T Consensus 263 li~~l~~~~~~~~-~g~~~~-~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V-~p~~~~~~~~~ 333 (427)
T 3i16_A 263 CIEKTSYRLTVPG-IGGECG-STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFE----V-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGCC-CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E-ESCTTSCCSSS
T ss_pred HHHHHHHhcccCc-cCccCC-ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCe----e-cCCCCCCCccE
Confidence 9988863 1111 111111 1122 33333333322 566778888888888888876421 1 12222 2
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
++.+.+. +.+...+|++.|....
T Consensus 334 i~~i~l~-------------~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 334 IQSIKFN-------------DKDKLIEFCKGIQTGS 356 (427)
T ss_dssp CEEEECS-------------SHHHHHHHHHHHHHTC
T ss_pred EEEEEEC-------------CHHHHHHHHHHHhhcC
Confidence 6667663 3355678888888763
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=156.44 Aligned_cols=310 Identities=11% Similarity=0.003 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH-HhhcCCCCccCCCC-C
Q 011856 137 PCLLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVATLGLP-D 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~-v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~-~ 213 (476)
+.....++.+.++++++ .+. +++++|+++|+..++... ...++.|++..++|+. .... +...|..+...... .
T Consensus 171 ~~~~i~e~e~~lA~~~g-ae~~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S-~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYN-ADKTYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKS-VYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp TBTHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHH-HHHHHTTTTCCEEEEECEEEC
T ss_pred ChHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHH-HHHHHHHHCCCEEEEEeCCcc
Confidence 34566788888998884 454 455555569999999842 2344556555555433 3333 44444432211110 0
Q ss_pred CCCCCCCCCCceeeccCCCHHHH-----HHHHhcCCCC---e----EE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 214 SPGVPKGATYETLTAPFNDVSAL-----ENLFENNKGE---I----AA-IILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~~~---~----a~-vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
..++ ...+ |+++| ++.++++.++ + ++ ++++|+ .+|.+.+ +++|.++|++||
T Consensus 247 ~~~i-------~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g 310 (730)
T 1c4k_A 247 PYGF-------IGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLC 310 (730)
T ss_dssp TTCC-------EEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGB
T ss_pred ccCc-------cCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcC
Confidence 0000 0011 55555 8888753101 2 44 455553 4788888 999999999999
Q ss_pred CEEEEeccccCc-cccccc----hh--hccCCC-Cc-hh--hhhhhcCCCCcE-EEEEecHHHH---------HhhcCCC
Q 011856 281 ALLIFDEVMTGF-RLAYGG----AQ--EYFGVT-PD-LT--TLGKIIGGGLPV-GAYGGRRDIM---------EMVAPAG 339 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~----~~--~~~g~~-pD-i~--t~sK~lg~G~~i-G~~~~~~~i~---------~~l~~~~ 339 (476)
++||+||+|.+. ..+..+ .. +.++.. |+ ++ +++|+++ |++. |+++.+++.+ ..+..
T Consensus 311 ~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~-- 387 (730)
T 1c4k_A 311 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN-- 387 (730)
T ss_dssp SEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH--
T ss_pred CeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH--
Confidence 999999999632 222111 11 122332 22 43 6899986 4444 5554443321 11110
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-H-hhhcCCceEe-----------------
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-A-GKKAGHAICG----------------- 397 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~v----------------- 397 (476)
......+.+.+++.+++..++++.+.. .++.+++.++.+++++.|++ + +.+.-.+..+
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~ 467 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNI 467 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccc
Confidence 011122345677777777777776653 55778888889999999877 2 1111000000
Q ss_pred --------------ee--ece-eE-E--EEEecCCC----cCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--
Q 011856 398 --------------GY--ISG-MF-G--FFFTEGPV----YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT-- 451 (476)
Q Consensus 398 --------------~~--~g~-~~-~--i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~-- 451 (476)
.+ .+. ++ . +.+..+.. ..+.. .......+.+.|.++||++...+...+++
T Consensus 468 ~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~----~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~ 543 (730)
T 1c4k_A 468 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED----FGVPATIVANYLRDHGIIPEKSDLNSILFLM 543 (730)
T ss_dssp GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS----SCCCHHHHHHHHHHTTCCCSEECSSEEEEEC
T ss_pred hhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccc----cCCCHHHHHHHHHHCCcEEEECCCCeEEEEe
Confidence 00 110 10 0 11211100 00000 01123567888999999998776555655
Q ss_pred eCCCcHHHHHHHHHHHHHHHHH
Q 011856 452 SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+|++++++++++|+++.+.
T Consensus 544 s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 544 TPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 5778999999999999988754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=155.75 Aligned_cols=307 Identities=9% Similarity=-0.021 Sum_probs=183.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCH-HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sG-seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.....++.+.+++.+ +.++.+|+.+| +.||.+++. +..++++.|+.+...|.+....+...|..+....... .
T Consensus 193 ~~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~---al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N 267 (715)
T ss_dssp TBTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH---HHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C
T ss_pred CcHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHH---HhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c
Confidence 3444567777788777 66777776666 699988888 4555555555666666666667777776543322110 0
Q ss_pred CCCCCCCCceeeccCC------CHHHHHHHHhcCCCCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 216 GVPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
. +.++++ |+++|+++++++++.. ++|+++| +..|.+.+ +++|.++|++++ ||+|
T Consensus 268 ~---------~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 268 A---------YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp T---------TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred c---------cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 0 111111 7999999998754322 4666677 66899998 999999998764 7999
Q ss_pred cccc-Cccccccch-hh--ccCCCCchh-----hhhhhcCCCC-cEEEEEecHHH-HHhhcCCCCccccCCCCCcHHHHH
Q 011856 287 EVMT-GFRLAYGGA-QE--YFGVTPDLT-----TLGKIIGGGL-PVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 355 (476)
Q Consensus 287 Ev~~-g~r~g~~~~-~~--~~g~~pDi~-----t~sK~lg~G~-~iG~~~~~~~i-~~~l~~~~~~~~~~t~~~~~~~~a 355 (476)
|+|. ++..+..+. .. ..+..+|++ +++|++++ + ..|++.+++++ .+.+.. ......|.+.+++.++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 9995 333232211 11 112235643 68999874 3 36777766542 112221 1112334578899999
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCceEee------eece------------------eEEEE
Q 011856 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGG------YISG------------------MFGFF 407 (476)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~------~~g~------------------~~~i~ 407 (476)
+..++++.++. +++++++.++.++++++|+++.... ++...+. +... ...++
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~D 487 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEEC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCC
Confidence 99999988762 5788999999999999999875321 1000000 0000 00010
Q ss_pred -----EecCCCc---CchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 408 -----FTEGPVY---NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 -----~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+...... .+... ......+.+.|.++||.+.-.....+.+ +...|++++++++++|.++-+
T Consensus 488 p~Kl~i~~~~~~~~G~~~~~----Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 488 PIKVTLLTPGMEKDGTMSDF----GIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp TTEEEEECSCBCTTSCBCSS----CCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCccccC----CCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 0000000 00000 1112456777888999887665444433 677899999999999987643
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=155.53 Aligned_cols=316 Identities=9% Similarity=-0.015 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC-C
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-P 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~ 215 (476)
+.....++.+.+++.++..+.++++||+++|+..++... ...++.|++..++|+. ....+...|..+...+.... .
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s-~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKS-IEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHH-HHHHHHHHCCEEEEECCCBCTT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHH-HHHHHHHcCCEEEEEeCCCCcc
Confidence 445566777777777743334566666678999999842 2345566666555444 44445555654432221100 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (476)
+.. ..+....-|+++|++.++++++.. .+++++| +.+|.+.+ +++|.++|++||++||+||
T Consensus 280 g~~-----g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 280 GII-----GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp SCB-----CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEEC
T ss_pred ccc-----cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence 100 000000017999999997643221 4555665 35788888 9999999999999999999
Q ss_pred cccCc-cccccc--hhhccCCCCch------h--hhhhhcCCCCc-EEEEEecHH--HH--HhhcCCCCccccCCCCCcH
Q 011856 288 VMTGF-RLAYGG--AQEYFGVTPDL------T--TLGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNP 351 (476)
Q Consensus 288 v~~g~-r~g~~~--~~~~~g~~pDi------~--t~sK~lg~G~~-iG~~~~~~~--i~--~~l~~~~~~~~~~t~~~~~ 351 (476)
+|.+. ..+..+ .....+...|+ + +++|+++ |++ .|+++++++ .+ ..+.. ......+.+.+.
T Consensus 349 A~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~--~~~~~~s~sp~~ 425 (755)
T 2vyc_A 349 AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLY 425 (755)
T ss_dssp TTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHH--HHHHTSCSSCCH
T ss_pred cCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHH--HHHHhCCCCHHH
Confidence 99643 332211 01112200132 3 6889876 444 566666543 11 12211 011222345677
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh--------cC--CceEeee-------------------
Q 011856 352 LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK--------AG--HAICGGY------------------- 399 (476)
Q Consensus 352 ~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~--------~~--~~~~v~~------------------- 399 (476)
+.+++..++++.+.. +++.+++.++.++++++|+++..+ +. .+..+.+
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTT 505 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccc
Confidence 888888888887765 368889999999999999886431 10 0001100
Q ss_pred --------------------ec------eeEEEEEecCC-CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 400 --------------------IS------GMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 400 --------------------~g------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
.| ..+.+...... ...+... ......+.+.|.++||.+...+...+++
T Consensus 506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~----g~~~~~l~~~L~~~gI~~e~~~~~~v~~~ 581 (755)
T 2vyc_A 506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEET----GVPAALVTAWLGRHGIVPTRTTDFQIMFL 581 (755)
T ss_dssp CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSS----CCCHHHHHHHHHTTTCCCSEECSSEEEEE
T ss_pred hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCcccc----CCcHHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 01 11111111000 0000000 0112467778888999887665555655
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHH
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+...|+++++.++++|.++.+.
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHh
Confidence 5667999999999999988643
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=145.79 Aligned_cols=280 Identities=16% Similarity=0.158 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh----hcCCCCccCCCCC
Q 011856 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV----KAGSGVATLGLPD 213 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~----~~g~~~~~~~~~~ 213 (476)
+...++.++++++++ +.+++.+++|++.++++++...+ ..++++|++.+..|+. +...+. ..|..+...+.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~-- 183 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL-- 183 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC--
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC--
Confidence 456788888988885 34456899999955444443322 3466777776655544 333321 23443332211
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe--ccccC
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD--EVMTG 291 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g 291 (476)
..+. + |+++ ++ +++++|+++.+ +++|.+.+ +++|.++|++||+++|+| +...|
T Consensus 184 ~~~~----------~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g 238 (438)
T 1wyu_A 184 EGGR----------T---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLG 238 (438)
T ss_dssp BTTB----------C---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGG
T ss_pred cCCc----------c---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhhcc
Confidence 1110 0 2222 32 36787777766 77899887 999999999999999965 23222
Q ss_pred ccccccchhhccCCCCchhhh-hhhcC-----CCCcEEEEEecHHHHHhhcCCC----------C-------------cc
Q 011856 292 FRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRDIMEMVAPAG----------P-------------MY 342 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~-sK~lg-----~G~~iG~~~~~~~i~~~l~~~~----------~-------------~~ 342 (476)
. .. ....+ .+|++++ +|.|+ +|.++|++++++++++.+.... + ..
T Consensus 239 ~-~~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 239 V-LK---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp T-BC---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred C-cC---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 2 00 01122 3577765 46543 3568999999998877653210 0 00
Q ss_pred ccCCCCC---cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee-ceeEEEEEecCCCcC
Q 011856 343 QAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYN 415 (476)
Q Consensus 343 ~~~t~~~---~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~ 415 (476)
..+|.+. +.+...++...+..+.. ++..++..++.+++.++|+++. ++. +.+. ..+..+.+..+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~~--~~~~~~~~~~~~~~~~---- 383 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVR--PFTPKPFFNEFALALP---- 383 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCE--ECSCSSBCSEEEEECS----
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CeE--ECCCCCeEEEEEEeCC----
Confidence 1233332 22322222222443322 3455666677777777766531 221 1111 22222333211
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEe--ccCC---CcceEEeCC--CcHHHHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA--HSSDDIQHTITAAEKVK 471 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~--~~~~---~~~~~~~~~--~t~e~i~~~~~~l~~~~ 471 (476)
....++.+.|.++||.+ .++. ...+|+++. +|++|+++++++|++++
T Consensus 384 ---------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 ---------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ---------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01257888999999998 4432 346788765 79999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=131.66 Aligned_cols=291 Identities=12% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhc--cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~--~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
.....+++|++|.++.+++..+... .+.++||+ ...-|-+...++.+.|..+..+.. .... +...+
T Consensus 133 ~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p-~~d~-------~~~~i--- 200 (501)
T 3hl2_A 133 TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIEN-VLEG-------DELRT--- 200 (501)
T ss_dssp TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECE-EEET-------TEEEE---
T ss_pred CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEee-eecc-------cccCC---
Confidence 4456888998887777777654322 23356665 677888888888888875443211 0000 01111
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCc
Q 011856 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPD 308 (476)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pD 308 (476)
|++++|++|++++ +.+.+|++.+.+..++.+.+ +++|.++|++||+++++||+|... .....+..+.+.. ..|
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 8999999998864 56777777766554555567 999999999999999999999544 3322222222222 378
Q ss_pred hhhhh--hhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHH
Q 011856 309 LTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQ 382 (476)
Q Consensus 309 i~t~s--K~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~~ 382 (476)
+++.| |.+-.-++.+.+.. ++++++.+.. .+- ++.+++|.. ....++..+ .+ .+++++..++.++|++
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP-Gr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~ 350 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP-GRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLSN 350 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC-SCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHHHH---hCC-CCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665 76543222233323 5677776642 221 333444422 222233222 22 6788889999999999
Q ss_pred HHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE----eccCC------------
Q 011856 383 GIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY----FAPSQ------------ 445 (476)
Q Consensus 383 ~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----~~~~~------------ 445 (476)
+|+++...++ ...+.+....-+++.+..... ........+...|..++|- |.++.
T Consensus 351 ~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~ 422 (501)
T 3hl2_A 351 QIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGF 422 (501)
T ss_dssp HHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESST
T ss_pred HHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCc
Confidence 9999877555 222333344445555532210 1111235667777787652 22221
Q ss_pred ------Cc--ceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 ------FE--AGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ------~~--~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++ ++.. ...++++|+|.++++|++++.++
T Consensus 423 g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 423 MSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp TTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 1222 36779999999999999999765
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=129.28 Aligned_cols=233 Identities=14% Similarity=0.019 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHH-HHHHHHHHHHHhccC-CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 139 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 139 ~~~~~la~~l~~~~~--~~e~v~~~~sGs-eA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
..+.++..++.+.++ .....+++|++| .++.+++..+|.... .+.||+. ..-|-+...++.+.|.++..+.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 344556666666543 445678999998 666666666665332 3455555 55899888888888876443221000
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
. +...+ |+++|+++|++++ +.+++|++.|.+..+|.+.+ +++|.++|++||++|++||+|.+.
T Consensus 177 ~--------~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 G--------DELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp T--------TEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C--------ccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 0 01111 8999999998765 46788888887766677888 999999999999999999999654
Q ss_pred cccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--
Q 011856 293 RLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (476)
Q Consensus 293 r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (476)
+.......+.+.. ..|.+++| |.+..-...+.+.. +++.++.+.. .+. ++-+.+| +.......+..-.+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~-g~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYP-GRASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSC-SCBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhh-cCCcccH-HHHHHHHHHHHHHHHH
Confidence 3221111111211 35777655 88876556677765 5566665542 121 1112233 22222222222111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
.++.++..++.+++++.|+++...++
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g 342 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHN 342 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 33455557788899999988875554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=136.83 Aligned_cols=319 Identities=13% Similarity=0.020 Sum_probs=179.7
Q ss_pred cCCCCcHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHHHh
Q 011856 112 IIGHADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARA 177 (476)
Q Consensus 112 ~lG~~~p~v~~a~~~~l~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~e~v~~-~~sGseA~~~al~~ar~ 177 (476)
..+.-+++|.+++.+.+.+. ...+ .+ .+...+..+.+++++.. .++|+| +.|||++++.+++-...
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 34446899999999887641 1111 11 23445667777777752 257888 48999999999984321
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
...+++++....+.++. .+...+...+.....++...+.. .+++.++..++ +++++|.+..+.+
T Consensus 100 ~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~------------~~~~~~~~~i~---~~t~lV~~~h~et 163 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYT------------KIPDPSTWNLN---PDASYVYYCANET 163 (377)
T ss_dssp GSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSC------------SCCCGGGCCCC---TTCSCEEEESEET
T ss_pred CCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcC------------CCCChHHhccC---CCccEEEEeCccC
Confidence 11246776665555553 12211212121111111111100 02333433333 3566777766666
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhc
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
.+|.+.| + +|+++|+++++|-+|+ + |. ..-.+.+++ ...+--|.+| .-.+|++..++++++.+.
T Consensus 164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~--g~~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-F--LSKPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTTEECS----S-----CCCCTTCCEEEECTTT-T--TSSCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCSCCC
T ss_pred chheEch----h-----hhccCCCEEEEEcccc-c--CCCCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHhhcc
Confidence 6899988 4 5789999999999995 1 11 112223332 2234459996 223888888888765544
Q ss_pred CCCCccc--------cCCC-CCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCc---eEeeee
Q 011856 337 PAGPMYQ--------AGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHA---ICGGYI 400 (476)
Q Consensus 337 ~~~~~~~--------~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~v~~~ 400 (476)
+..+.+. ..++ +.|.....+..++|+.+.+. ...++.+++.++++++|+++. ++. .+....
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~~r 305 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQNR 305 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGGGB
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHHHc
Confidence 2111111 1222 33555666666788877543 455666667777777776541 111 011112
Q ss_pred -ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+.|.+.+-. ++.+....+...+.++||.+.++. ...+|++ ..+|++|||.+++.|++++++
T Consensus 306 s~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 306 SKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 234555553210 112222457778889999987762 2357775 456999999999999998875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=123.03 Aligned_cols=307 Identities=11% Similarity=-0.053 Sum_probs=171.5
Q ss_pred CcHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~e~v~~-~~sGseA~~~al~~ar~~~~~ 181 (476)
-+|+|.+++.+.+.+. ...+ .+ .+...+..+.+++++.. .++|+| ++|||++++.+++-. ..+
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~---~~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL---ALN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CCS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc---CCC
Confidence 4899999999877531 1111 11 24455677778887752 347888 999999999999843 244
Q ss_pred ceEEEEeCCCCCCchhH-HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
+++.....+.+++.... +...|..+..++.+. .+. +. .+++. + |+ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~-~g~--------~~---~~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSE-ESN--------FD---HIPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECT-TTT--------SC---SCCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEeccc-CcC--------CC---cCChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 54433333344432111 111233222211111 110 00 02222 2 43 2566676665555678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEecHHHHHhhcC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
.+.+. +++ +|+++++|-+|+ + |. ..+++ ..|++++| |.+| .-.+|++..++++.+.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~-~--g~----~~id~~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD-F--FS----RKVDFSNIALFYGGVQKNAG-ISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG-T--TS----SCCCCTTEEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHT
T ss_pred eeCCc---------ccc-cCCEEEEEcccc-c--CC----CCCCcccCCEEEEechhccC-CCccEEEEEcHHHHhhhcC
Confidence 87652 333 499999999995 1 11 01111 24666554 9996 2238999999998877653
Q ss_pred -CCCcc--------ccCCC-CCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eece
Q 011856 338 -AGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISG 402 (476)
Q Consensus 338 -~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~ 402 (476)
..+.+ ...++ +.|..+..+..++|+.+.+. ...++.+++.++++++|+++..-+....... ....
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ 296 (361)
T 3m5u_A 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLM 296 (361)
T ss_dssp CCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSS
T ss_pred CCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCe
Confidence 11111 11122 34566666777888887654 3455666666666666665420000000001 1123
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.+.+.+. .... ..+...|.++||.+..+.. ..+|++ ..+|++|||++++.|+++.++
T Consensus 297 ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 297 NVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 445554320 0111 3577888899999877632 357876 445999999999999998765
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-13 Score=130.60 Aligned_cols=319 Identities=12% Similarity=0.002 Sum_probs=173.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC-------C--CCHHHHHHHHHHHhhCCC--CCeEEE-eCCH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-------A--PCLLENVLAEMVISAVPS--IEMVRF-VNSG 164 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~-------~--~~~~~~~la~~l~~~~~~--~e~v~~-~~sG 164 (476)
+.|+|..+. . .-+|+|.+++.+.+.+.. ..+ . ..+...+..+.+++++.. .++|+| +.||
T Consensus 27 ~~yl~~agp---t---~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGP---A---MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSS---C---CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCC---C---CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 356664443 2 148999999987664311 000 0 122334566667766642 246888 6999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCC-CCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
|++++.+++-. ...++++++...+.++. .+....... .+..++.+ ...|. . .++++++..++
T Consensus 101 T~a~n~ai~~l--~~~gd~v~~~~~~~~~~-~~~~~a~~~G~v~~v~~~~~~~G~---------~---~~~~~~~~~l~- 164 (386)
T 3qm2_A 101 RGQFAGVPLNL--LGDKTTADYVDAGYWAA-SAIKEAKKYCAPQIIDAKITVDGK---------R---AVKPMREWQLS- 164 (386)
T ss_dssp THHHHHHHHHH--CTTCCEEEEEESSHHHH-HHHHHHTTTSEEEEEECEEEETTE---------E---EECCGGGCCCC-
T ss_pred hHHHHHHHHhc--cCCCCeEEEEeCCHHHH-HHHHHHHHhCCeEEEecCcccCCC---------C---CCchHHHhhcC-
Confidence 99999999843 33456776666555553 222211111 11111100 00110 0 03345555454
Q ss_pred CCCCeEEEEEcccCCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhhhhhhcCCCC
Q 011856 243 NKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGL 320 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t~sK~lg~G~ 320 (476)
+++++|.+..+.+.+|.+ .| +++|. +|+++++|-+|+ + |. ..-.+.+++ ++.+--|.+| .-
T Consensus 165 --~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~--g~~pidv~~~~~--~~~s~hK~lG-P~ 227 (386)
T 3qm2_A 165 --DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-I--LSAPLDVSRYGV--IYAGAQKNIG-PA 227 (386)
T ss_dssp --TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-T--TSSCCCGGGCSE--EEEETTTTTC-CT
T ss_pred --CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-c--CCCCCCccccCE--EEEecccccC-CC
Confidence 357777777776778885 77 44443 899999999995 1 11 112223332 3334559995 22
Q ss_pred cEEEEEecHHHHHhhcCCCCcc--------ccCCC-CCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~ 387 (476)
-+|++..++++.+.+.+..+.+ ....+ +.|..+..+..++|+.+.+ ++..++.+++.++++++|+++
T Consensus 228 G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~ 307 (386)
T 3qm2_A 228 GLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS 307 (386)
T ss_dssp TEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3999999988765544221111 01111 2344455566677776643 345566666777777777654
Q ss_pred hhhcCCce---Eeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEe--CCCcHHH
Q 011856 388 GKKAGHAI---CGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDD 459 (476)
Q Consensus 388 ~~~~~~~~---~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~--~~~t~e~ 459 (476)
++.. +... ....+.+.+.+. ... ..+...|.++||.+..+.. ..+|++ ..+|++|
T Consensus 308 ----~~~~~~~~~~~rs~~iv~f~~~~~------------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~ed 370 (386)
T 3qm2_A 308 ----DFYRNDVAQANRSRMNVPFQLADN------------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEG 370 (386)
T ss_dssp ----SSEECCBCGGGBCSSEEEEEESSG------------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred ----CCcccCCCHHHcCceEEEEECCCc------------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHH
Confidence 2211 1111 123455555321 111 4566778899999876522 357876 4458999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
||++++.|+++.++
T Consensus 371 Id~l~~~l~~~~~~ 384 (386)
T 3qm2_A 371 VKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=99.89 Aligned_cols=313 Identities=15% Similarity=0.069 Sum_probs=163.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCCCCCeE-----EEeCCHHHHHHHHHHHHHhcc
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVPSIEMV-----RFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-----------~~~~~~la~~l~~~~~~~e~v-----~~~~sGseA~~~al~~ar~~~ 179 (476)
..|.|.+|+-..+.+-..-||| ++.+.-..++.+++|. .+.. +=..||+.||.++... ...
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~-a~~A~w~VNVQP~SGs~AN~avy~A--ll~ 142 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD-LDPAQWGVNVQPYSGSPANLAVYTA--LLQ 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHH--HCC
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhC-CCccccCCCCCcCCHHHHHHHHHHH--HcC
Confidence 4688888877776652111211 2333333345556664 3321 2345899999999983 234
Q ss_pred CCceEEEEeCCCCCCchhH-------HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 180 GRERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
++++|+.++-..-|+.... ...+|. . ...++.....+.-.+ |.+.++++.+++ +.++||+
T Consensus 143 PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~--~------~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~--kPklIi~ 209 (490)
T 3ou5_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSI--F------FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp -CCCEECBC------------------------------------CBCEETTTTEE---CHHHHHHHHHHH--CCSEEEE
T ss_pred CCCEEEecccCCCCcccccccCCCcccccccc--c------ccccccccCCCCCcc---cHHHHHHHHhhc--CCCeEEE
Confidence 5666776643322221110 000111 0 000000000000011 889999988876 5667777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~ 328 (476)
-...- -...+ +++++++|++.|++|++|=+| +|+ -.|.+ . ..+.. .|++|. -|+|.| -|.|.++++
T Consensus 210 G~SaY--~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~-p-sP~~~-ADvVTtTTHKTLrG-PrGG~Il~~ 279 (490)
T 3ou5_A 210 GTSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVI-P-SPFKH-ADIVTTTTHKTLRG-ARSGLIFYR 279 (490)
T ss_dssp CCSSC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSS-C-CGGGT-CSEEEEESSSTTCS-CSCEEEEEE
T ss_pred CCccC--ccccC----HHHHHHHHhhcccEEEechhhhhhhhccccc-C-Ccccc-ceEEeccccccccC-CCceEEEec
Confidence 54321 22345 999999999999999999999 677 33321 1 12222 588854 499874 467777776
Q ss_pred H---------------HHHHhhcCCCCccccCCCCCcHHHHHHHHHH-HH-HhcC--CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 329 R---------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT-LK-RLKE--PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 329 ~---------------~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aa-l~-~~~~--~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
+ ++.+.+.. ...-+..+++-.-..||++. +. .+.. .++.+++.++.+.|.+.|.+.+.
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~---aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~ 356 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINF---AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 356 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHH---HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccchhHHHHHHHHHh---hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 33344431 11111222322333333322 33 2332 56778888888888888887643
Q ss_pred hcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe------CC
Q 011856 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS------LA 454 (476)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~------~~ 454 (476)
+. +.. .-...++.+++..... ...+..+.|-+.||.+.... ...+|+. -.
T Consensus 357 ~v--vsG-gTdnHlvLvDl~~~g~------------tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG 421 (490)
T 3ou5_A 357 SL--VSG-GTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp EE--GGG-SCSSSEEEEECGGGTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred ee--ecC-CCCceEEEEeccccCC------------CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCC
Confidence 21 110 0123355566532111 12344556667899876321 1246772 46
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~ 472 (476)
..++|++++.+.|.+++.
T Consensus 422 ~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 788999998888887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 476 | ||||
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 1e-141 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 7e-78 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 3e-65 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 4e-65 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 8e-64 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 4e-45 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 2e-40 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 1e-26 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-14 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 7e-13 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-11 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 2e-10 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 5e-07 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 9e-07 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-06 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 411 bits (1056), Expect = e-141
Identities = 308/423 (72%), Positives = 357/423 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLRL RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKV 470
V
Sbjct: 421 RTV 423
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 247 bits (631), Expect = 7e-78
Identities = 110/435 (25%), Positives = 170/435 (39%), Gaps = 33/435 (7%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 2 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 52
Query: 112 IIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTE 166
GH +V+AA+ +KK + L E++ VP V +G+E
Sbjct: 53 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE 112
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKG 220
A +++ARA T R I F G YHG L G +G+ + +
Sbjct: 113 AVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172
Query: 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
+ + +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 173 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 232
Query: 281 ALLIFDEVMTG-FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PDLTT K I GG P+ GR ++M+ VAP G
Sbjct: 233 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 292
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K
Sbjct: 293 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG 349
Query: 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAH 455
+ M E +N DAK A ++G+ L
Sbjct: 350 LGAMIAIELFEDGDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTI 404
Query: 456 SSDDIQHTITAAEKV 470
I+ + +
Sbjct: 405 EDAQIRQGLEIISQC 419
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 213 bits (544), Expect = 3e-65
Identities = 82/400 (20%), Positives = 146/400 (36%), Gaps = 33/400 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLL 140
P+V KG ++D++ Y D++ ++ GH +L A+ K T A +
Sbjct: 22 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ E ++ + + V +N+G EA +L R + + +
Sbjct: 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYE----VKKIPENMAKIVVCK 137
Query: 201 KAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDVSALENLFENNKGEIAAIILEPV 255
SG + S + + P++D+ ALE ++ + A I+EP+
Sbjct: 138 NNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPI 195
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 314
G +G I P ++L + I K+ L + DEV TG R ++ V PD+ LGK
Sbjct: 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGK 255
Query: 315 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ GG P+ A DIM ++ P T GNPLA + + L L E
Sbjct: 256 ALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEKLCENA 312
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARF 430
K+ G + + K + + G + F V + K +
Sbjct: 313 EKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEFKNELVNVLDICLKLKENGL--I 367
Query: 431 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
R + ++ + P L + + + K
Sbjct: 368 TRDVHDKTIRLTP--------PLCITKEQLDECTEIIVKT 399
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 213 bits (543), Expect = 4e-65
Identities = 88/394 (22%), Positives = 159/394 (40%), Gaps = 22/394 (5%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T
Sbjct: 24 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 83
Query: 142 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFL 199
+ E I+ + + V +N+G EA +LAR + + I+ + A F
Sbjct: 84 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 143
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259
+ S +++ P S P+ND+ ALE ++ +AA ++EP+ G +
Sbjct: 144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 318
G + P P +L +R + + L I DE+ TG R A +Y V PD+ LGK + G
Sbjct: 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 261
Query: 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378
GL + D + + P T GNPL I L+ L+E E +K+
Sbjct: 262 GLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGI 319
Query: 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438
L ++ A+ G + K+++ + + + G
Sbjct: 320 ILRNELMKLPSDVVTAVRG--KGLLNAIVI-----------KETKDWDAWKVCLRLRDNG 366
Query: 439 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKV 470
+ P+ + + L D+++ +I K
Sbjct: 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 400
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 209 bits (533), Expect = 8e-64
Identities = 107/397 (26%), Positives = 170/397 (42%), Gaps = 39/397 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGAPCL 139
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ + P
Sbjct: 20 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTP 79
Query: 140 LENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
+ + + +P F SGTEA L+ ARA TGR++ + + G
Sbjct: 80 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGS 139
Query: 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258
L + + P P V P+NDV AL+ + E AA+ILEPV G
Sbjct: 140 L--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEALKRAVDE---ETAAVILEPVQGE 189
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 317
G P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD+ TL K +G
Sbjct: 190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALG 249
Query: 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 377
GG+P+G R ++ + G T GNPLAM AG+ ++ L+ +E ++
Sbjct: 250 GGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELG 306
Query: 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437
+ + + G G+ ++ + + +R + +
Sbjct: 307 PWFMEKLRAIPSPKIREVRG---MGLMVGLE-------LKEKAAPYIARLEKEHRVLALQ 356
Query: 438 G----VYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
+ F P L +D++ + A V
Sbjct: 357 AGPTVIRFLP--------PLVIEKEDLERVVEAVRAV 385
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 161 bits (406), Expect = 4e-45
Identities = 93/412 (22%), Positives = 160/412 (38%), Gaps = 32/412 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----------ALENLFENNKGEIA 248
S P + G T F A + + + G +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRLAYGGAQEYFGVTP 307
A I EP++ + G I ++ A++R + G LLI DE TG R A + GVTP
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +G GLP+ A I E A T +PL G+ L ++
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSET 424
G N + L +G++D ++ G + G + G + K+
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCI---GDVRGRGLLLGVEIVKDR-----RTKEPAD 374
Query: 425 TKFARFYRGMLEEGVYFAPSQFEAGFT------SLAHSSDDIQHTITAAEKV 470
A+ R + G+ Q L S D+I ++ +
Sbjct: 375 GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 426
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 148 bits (373), Expect = 2e-40
Identities = 96/413 (23%), Positives = 158/413 (38%), Gaps = 42/413 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPC- 138
S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 139 -LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYH 192
+ ++V +E V +SG+ A +++A + R+R + F YH
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYH 145
Query: 193 GHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247
G + + L P++ P + D+ L ++ EI
Sbjct: 146 GDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI 205
Query: 248 AAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
AA+I+EP+V +G P++L IR+I G LLI DE+ TGF R A E+ +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI 265
Query: 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 362
PD+ LGK + GG + + A R++ E ++ AG T GNPLA A +L
Sbjct: 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325
Query: 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422
L+ + + I +L + + A + + G G T PV
Sbjct: 326 ILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTHPV--------- 374
Query: 423 ETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAHSSDDIQHTITAAEKV 470
A + +E+GV+ P G +Q A +
Sbjct: 375 ---NMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILPQQLQRLTAAVNRA 420
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 109 bits (273), Expect = 1e-26
Identities = 69/483 (14%), Positives = 125/483 (25%), Gaps = 105/483 (21%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
+S E + ++ +G+++ D+DGN +D
Sbjct: 16 RSRELMKQLNIIQNAEAVHF----------FCNYEESRGNYLVDVDGNRMLDLYSQISSI 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNS 163
IG++ ++ + + T P L L E ++S A + + +
Sbjct: 66 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 125
Query: 164 GTEACMGVLRLARAF--------------------------TGRERIIKFEGCYHGHADP 197
G+ + + + I+ F G +HG
Sbjct: 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185
Query: 198 FLVKAGSGVATLGLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENN 243
L S S P + +V L +
Sbjct: 186 CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK 245
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQ 300
K +A II+EP+ G DF +R I++++G + DEV TG +
Sbjct: 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
D+ T K + G E P P T G+P
Sbjct: 306 WGLDDPADVMTFSKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFE 417
+ +K L G++D + I + G F + + N
Sbjct: 358 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN-- 413
Query: 418 DAKKSETTKFARFYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAA 467
+ +GV F P +L +
Sbjct: 414 -----------KLISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIF 454
Query: 468 EKV 470
+
Sbjct: 455 SDI 457
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 73.0 bits (178), Expect = 2e-14
Identities = 54/444 (12%), Positives = 110/444 (24%), Gaps = 58/444 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD-------DQVLAALGETMKKGTS 133
+P ++ E P ++ D D A+ ++M+
Sbjct: 5 EPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64
Query: 134 FGAPCLLE----NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 183
G LAE V + + + G A + + R +
Sbjct: 65 RGDEAFSGSRSYYALAESV-KNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-EN 242
++ F + G V + + ++ ++ D+ LE E
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLA 295
+ I+ ++G L A+ I K+ ++ D R A
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAG 345
+T + ++ A ++ M + Q G
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405
+ L A L + ++L Q ++D ++ G F
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFV 358
Query: 406 ---FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG------------- 449
P F + R + E G + + G
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLT 417
Query: 450 FTSLAHSSDDIQHTITAAEKVKMR 473
++ + I A + VK
Sbjct: 418 IPRATYTQTHMDFIIEAFKHVKEN 441
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 68.0 bits (165), Expect = 7e-13
Identities = 49/411 (11%), Positives = 102/411 (24%), Gaps = 45/411 (10%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
YID + G + + E ++ L++ E+ + +
Sbjct: 40 SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYD---LKDKAKELF-----NYD 91
Query: 157 MVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213
+ + G A + + + G+ + F +H V+ A + +
Sbjct: 92 YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
+ + + ++ I AI+ ++G L +
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 274 RITKENGALLIFDEVMTGFRLAYGG--------------AQEYFGVTPDLTTLGKIIGGG 319
I K++G ++ D + + + LT K
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 320 LPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPGTYEYLNK 375
G R + I + + G M A + L+ E Y
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435
L + +AG + G + + P F R +
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV- 388
Query: 436 EEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTITAAEKVKMR 473
E G + G A D + + A +K +
Sbjct: 389 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 439
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 62.9 bits (151), Expect = 2e-11
Identities = 56/366 (15%), Positives = 92/366 (25%), Gaps = 42/366 (11%)
Query: 116 ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
+++ A+ + +G LE + AE E FV SGT +
Sbjct: 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSI 66
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
+ + +A L VP
Sbjct: 67 MAHTQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKA 118
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + I +E SG + + I I KE+G + D
Sbjct: 119 I----RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174
Query: 293 RLA--YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
+EY G + G RD +E A M G
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 234
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
LA I K K E + + K+ G+++ + T+
Sbjct: 235 VLAAAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 287
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 468
N F + GV T S +DI+ + E
Sbjct: 288 NLKVNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
Query: 469 KVKMRF 474
K+ +F
Sbjct: 337 KLFRKF 342
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 58/406 (14%), Positives = 113/406 (27%), Gaps = 61/406 (15%)
Query: 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD-QVLAALGETMKK-GTSFGAPCLLE 141
+ S + + + DG+ I++ + +G A+ ++AA M G + +
Sbjct: 30 IITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 142 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201
++ F+ A G D +
Sbjct: 87 GTQDSHKEL---EQKLAAFLGMEDAILYSSCFDANGGLFE--------TLLGAEDAIISD 135
Query: 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261
A + + + D + K Y ++ A I + V G
Sbjct: 136 ALNHASII---DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV 192
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKII 316
I L + + + AL++ D+ + G EY V +T
Sbjct: 193 I----ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA 248
Query: 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GG G R++++E + Y + + + L
Sbjct: 249 LGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWAN 308
Query: 377 TGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
+ + + AG A HAI I M G + +F R
Sbjct: 309 ARQFREQMSAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARE 347
Query: 434 MLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 470
+ +EG+Y + S AH+ + I + A ++
Sbjct: 348 LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (117), Expect = 5e-07
Identities = 47/413 (11%), Positives = 103/413 (24%), Gaps = 74/413 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSF 134
+ G + D +Y+ DY+G + H Q++ A + ++ G
Sbjct: 21 RRYPVAQGAGRWL-VADDRQYLNFSSNDYLG------LSH-HPQIIRAWQQGAEQFGIGS 72
Query: 135 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
G V+ + + + G R + F + +
Sbjct: 73 GGS---------------------GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAAN 111
Query: 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYET----LTAPFNDVSALENLFENNKGEIAAI 250
S A + NDV+ L L + +
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMV 171
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPD 308
+ E V G AP + +++T+++ L+ D+ + G+ V P+
Sbjct: 172 VTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 227
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
L + G G+ A + + + T + +
Sbjct: 228 LLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSD 285
Query: 369 TYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTK 426
+ + L + + I + V + A +
Sbjct: 286 EGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLI--------VGDNSRALQ----- 332
Query: 427 FARFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 470
+ ++G + + + AH DI +
Sbjct: 333 ---LAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 48.3 bits (113), Expect = 9e-07
Identities = 44/364 (12%), Positives = 73/364 (20%), Gaps = 39/364 (10%)
Query: 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
I A +V AL + L + V V +GT A L
Sbjct: 12 IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 71
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
G + +
Sbjct: 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVR 120
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + D + AI + K + L D
Sbjct: 121 LRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180
Query: 293 RLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
L G A+ + D + G G L A + S
Sbjct: 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK 240
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
L N L QG+ G + GG + +
Sbjct: 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLD 297
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTIT 465
+L+ G F ++ TS A +++D+ H +
Sbjct: 298 S------------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLN 339
Query: 466 AAEK 469
Sbjct: 340 QVRL 343
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 35/340 (10%), Positives = 87/340 (25%), Gaps = 24/340 (7%)
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 314
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 315 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ + G Y + ++ ++ + P + + + + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRAS---ATPVVNTLVSLLSMGSKNYLELVKNQ 335
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 434 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 470
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.97 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.96 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.96 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.95 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.95 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.95 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.94 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.94 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.94 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.94 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.94 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.93 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.93 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.93 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.92 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.92 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.92 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.91 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.91 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.91 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.9 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.89 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.88 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.88 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.88 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.87 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.86 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.85 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.84 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.83 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.83 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.83 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.81 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.79 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.78 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.77 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.74 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.74 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.73 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.7 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.69 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.68 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.68 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.66 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.65 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.63 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.62 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.6 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.59 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.58 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.56 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.56 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.55 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.55 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.55 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.53 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.53 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.49 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.49 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.48 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.47 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.46 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.45 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.44 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.38 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.3 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.21 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.17 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.17 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.1 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.01 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.94 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.93 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.81 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.79 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=1.2e-78 Score=609.21 Aligned_cols=426 Identities=72% Similarity=1.203 Sum_probs=394.3
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
++.+|+++++++++++|+|+++++|.|..++++|+++++++|+|+||.|||+||||.++++++++||+||+|++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~ 81 (427)
T d2gsaa_ 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++.....+.....++++++.+..|..++++|++||+||++.|+|+||.+++|.+||.++++|||++..++..++.+...
T Consensus 82 ~~~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~ 161 (427)
T d2gsaa_ 82 EKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp TTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHH
T ss_pred HhcCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccc
Confidence 99777777888889999999999888899999999999999999999999999999999999999999999888776655
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|..+++......+...++++|++++|++++++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||
T Consensus 162 ~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv 241 (427)
T d2gsaa_ 162 LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp TTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccc
Confidence 55566666655556678889999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
++|||+|.+|+++++|+.|||+|+||++++|+|+|++++++++++.+.+.+...+++||++||++|+|++++|+++++++
T Consensus 242 ~tG~r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~ 321 (427)
T d2gsaa_ 242 MTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp TTBTTTBTTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT
T ss_pred cccceecccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhh
Confidence 99998899999999999999999999999999999999999999998866667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.+++++++++|+++|+++..+++....+.+.|.|+++.+...++.++.+....+......+...|+++||++.|+....
T Consensus 322 l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~ 401 (427)
T d2gsaa_ 322 TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcc
Confidence 99999999999999999999999988888899999999998877777777666677777889999999999999987766
Q ss_pred eEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 449 GFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 449 ~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++||++|||+++++|+++++++
T Consensus 402 ~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 402 GFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 77899999999999999999998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-69 Score=544.15 Aligned_cols=402 Identities=27% Similarity=0.399 Sum_probs=343.4
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
+++++++|+++++|+|+.++ +|+++++++|+|+||.|||+||||.+++++++|||+||+|.+|+.+|++++
T Consensus 2 ~~~~l~~r~~~~~~~g~~~~---------~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~ 72 (425)
T d1sffa_ 2 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 72 (425)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHhcCCCCCCC---------CCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhc
Confidence 47899999999999998654 499999999999999999999999999999999999999999999999985
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 132 TS---FGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
.+ ....++...++++++.+.+|+ .++++|++||+||++.|+|+||.+++|.+||.++++|||+++.++..++...
T Consensus 73 ~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~ 152 (425)
T d1sffa_ 73 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 152 (425)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCC
Confidence 43 334578899999999999983 5799999999999999999999999999999999999999999999887643
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCC----C------HHHHHHHH--hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFN----D------VSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~----d------~~~le~~l--~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
..... .... .......+++ + .+..++.+ ....+++++||+||+++++|.+.|+++||++|++
T Consensus 153 ~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~ 226 (425)
T d1sffa_ 153 PYSAG--MGLM----PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRA 226 (425)
T ss_dssp TTTTT--SCCC----CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHH
T ss_pred cccCC--cccc----cCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHH
Confidence 22111 0000 0112222221 1 11222222 2344689999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
+|++||++||+|||+||| |+|.+|+++++|+.|||+|+||++++|+|+|++++++++++.+. +..+++||++||++
T Consensus 227 lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~---~~~~~~T~~gnpl~ 303 (425)
T d1sffa_ 227 LCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA---PGGLGGTYAGNPIA 303 (425)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSC---TTSBCCSSSSCHHH
T ss_pred HHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhC---CCCCCCCCCcCHHH
Confidence 999999999999999998 99999999999999999999999999999999999999999886 45688999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
|+|++++|+.++++++.+++++++++++++|+++..+++.+.++++.|+|++++|..+...+ .++......+.+.
T Consensus 304 ~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~-----~~~~~~~~~~~~~ 378 (425)
T d1sffa_ 304 CVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHN-----KPDAKLTAEIVAR 378 (425)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTT-----SBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccC-----CccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997543222 2456677889999
Q ss_pred HHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHhhC
Q 011856 434 MLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRFLF 476 (476)
Q Consensus 434 l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~~ 476 (476)
|+++||++.+.+. +.+++ ++++|++|||+++++|+++++++-+
T Consensus 379 l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 379 ARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp HHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999987653 33444 6899999999999999999998743
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-67 Score=520.12 Aligned_cols=387 Identities=23% Similarity=0.335 Sum_probs=333.6
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
++|++++++.+++.+..+ .++|+++++|+|+|+||.|||+||||.+++++++|||+||+|++|+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~----------~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~ 72 (404)
T d2byla1 3 PTSDDIFEREYKYGAHNA----------HPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK 72 (404)
T ss_dssp CCHHHHHHHHHHHBCSCC----------CCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHhccCCC----------CCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh
Confidence 468999999999966432 1349999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc--------CCceEEEEeCCCCCCchhHHh
Q 011856 131 GTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 131 ~~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~~ 200 (476)
+... .+++....++++.+.+.. +.++++|++||+||++.|+|+||.++ ++.+++.++++|||.+...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~ 151 (404)
T d2byla1 73 LTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS 151 (404)
T ss_dssp CCCCCTTEEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHT
T ss_pred CCCcccccccchHHHHHHhhhhcc-cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceec
Confidence 5433 234455566777776665 77899999999999999999999764 567899999999999998888
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
..+.+.....+ ......+..+|++|++++++.++. +++++||+||+++++|.+.++++||++|+++|++||
T Consensus 152 ~~~~~~~~~~~-------~p~~~~~~~~p~~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g 222 (404)
T d2byla1 152 SSTDPTSYDGF-------GPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQ 222 (404)
T ss_dssp TCCCHHHHTTS-------CSCCTTEEEECTTCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred cCCCcccccCC-------CCCCCCeeEecccCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcC
Confidence 77664332211 111234778899999999999975 489999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHH
Q 011856 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~ 358 (476)
++||+|||++|| |+|.+|+++++|+.|||+|+||++++| +|+|++++++++++.+. +..+++||++||++|+|++
T Consensus 223 ~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~ 299 (404)
T d2byla1 223 VLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK---PGEHFSTYGGNPLGCRVAI 299 (404)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC---TTSSCCSSTTCHHHHHHHH
T ss_pred eEEEeeccccccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccC---CCCCCcCCCcCHHHHHHHH
Confidence 999999999999 999999999999999999999999988 79999999999999887 4568899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
++|+.++++++.+++++++++++++|+++. .+.+.++++.|+|+++++.+.... ...++.+.|+++|
T Consensus 300 a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~~~~-----------~~~~~~~~l~~~G 366 (404)
T d2byla1 300 AALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKETKDW-----------DAWKVCLRLRDNG 366 (404)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCCSSC-----------CHHHHHHHHHHTT
T ss_pred HHHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecCCch-----------hHHHHHHHHHhCC
Confidence 999999999999999999999999999874 356889999999999999653211 1356888999999
Q ss_pred eEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 439 VYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 439 v~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
|++.+.+.+.+++ ++++|++|||+++++|++++.+
T Consensus 367 vl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EECEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 9998866566666 6889999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-66 Score=515.05 Aligned_cols=362 Identities=29% Similarity=0.408 Sum_probs=321.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
.|++|+|++|+|+||.|||+||||.+++++++|||+||+|.+|+.+|++++.. ...+++...++++.+.+..+ +.++
T Consensus 19 ~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 98 (387)
T d1vefa1 19 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNR 98 (387)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEE
T ss_pred CCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhcccccee
Confidence 59999999999999999999999999999999999999999999999998543 34568889999999999887 5678
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
++|++||+||++.|+|+||.++++.+|+.++++|||++..++..++.......+ .....++..+||||++.|+
T Consensus 99 v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~-------~p~~~~~~~~p~~d~~~l~ 171 (387)
T d1vefa1 99 VFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF-------LPLVEPVEFIPYNDVEALK 171 (387)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG-------CSCSSCEEEECTTCHHHHH
T ss_pred eccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCC-------CCCCCCceEeCCCCHHHHH
Confidence 999999999999999999999999999999999999999999887764322111 0112347789999999999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhc
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKII 316 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~l 316 (476)
+.+++ ++++||+||+++++|.+.++++||++|+++|++||++||+|||+||| |+|.+++++++|+.||++|+||++
T Consensus 172 ~~~~~---~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l 248 (387)
T d1vefa1 172 RAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKAL 248 (387)
T ss_dssp HHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG
T ss_pred HhcCC---CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccC
Confidence 98863 79999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 317 g~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
++|+|++++++++++++.+. +..+++||++||++|+|++++|+.++++++.+++++++++++++|+++. .+.+.+
T Consensus 249 ~gG~~~~~~~~~~~~~~~~~---~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~--~~~v~~ 323 (387)
T d1vefa1 249 GGGVPLGVAVMREEVARSMP---KGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP--SPKIRE 323 (387)
T ss_dssp GTTSSCEEEEEEHHHHHTSC---TTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC--CTTEEE
T ss_pred CCCccccccccceeeeeccc---cCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcC--CCceEE
Confidence 99999999999999998876 5668999999999999999999999989999999999999999999874 456788
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~ 471 (476)
+++.|+|+++++.++. ...+.+.++++|+++.+.+...+++ ++++|++|||+++++|++++
T Consensus 324 vrg~Gl~~~ie~~~~~--------------~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 324 VRGMGLMVGLELKEKA--------------APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEEETTEEEEEESSCS--------------HHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EeecceEEEEEEeCCc--------------hHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 9999999999996431 1356677788999988776666655 68999999999999999987
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2.9e-66 Score=520.86 Aligned_cols=407 Identities=22% Similarity=0.284 Sum_probs=332.1
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC
Q 011856 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (476)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~ 133 (476)
.++++++++++.... .++ .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++..+
T Consensus 5 ~~~~~~~~~~~~~~~-------~~~--~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~ 75 (431)
T d1zoda1 5 ATFWRNARHHLVRYG-------GTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH 75 (431)
T ss_dssp HHHHHHHHHHCCCCS-------SCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhHHHhhccC-------CCC--CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc
Confidence 467777777665311 111 38999999999999999999999999999999999999999999999998643
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
..++++...+|+++|++..| +.++|+|++||+||++.|+|+||.+++|.+|+.++++|||++..++..++.......
T Consensus 76 ~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~ 155 (431)
T d1zoda1 76 LFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGV 155 (431)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred cccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhccccccccccc
Confidence 34578888999999999987 689999999999999999999999999999999999999999999887765332211
Q ss_pred CCCCCCCCCC-----CC-CceeeccCC---CHHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 211 LPDSPGVPKG-----AT-YETLTAPFN---DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 211 ~~~~~~~~~~-----~~-~~~~~~~~~---d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
.|...+.... .. ........+ +++.++..+. ..++++++||+||+++++|.+.++++|+++|+++|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~g 235 (431)
T d1zoda1 156 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG 235 (431)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcC
Confidence 1221111000 00 000000111 2344443332 345689999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHH
Q 011856 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~a 359 (476)
++||+|||+||| |+|.+++++++|+.||++|+||++++|+|++++++++++++.+.. ....+++|+++||++|+|+.+
T Consensus 236 illI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~-~~~~~~~T~~g~pl~~aaa~a 314 (431)
T d1zoda1 236 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLPAAVGLR 314 (431)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHH-TTCCCCCTTTTCHHHHHHHHH
T ss_pred ceEEeccccccccccccccccccCCCCcchhccccccccccccceeeeeecchhhhhc-ccccccCCCCCCcchHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999887653 234578899999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe
Q 011856 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (476)
Q Consensus 360 al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (476)
+|+.++++++.+++.++++++.+.++++..+++.+.++++.|+|++++|..+... ..+.......+.+.|+++|+
T Consensus 315 ~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~-----~~~~~~~~~~i~~~~~~~Gl 389 (431)
T d1zoda1 315 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMNLGL 389 (431)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHHTTE
T ss_pred HHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcc-----cCccHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999753221 12334456778899999998
Q ss_pred Ee----ccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 440 YF----APSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 440 ~~----~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+. .+...+.+++ ++++|++|||+++++|++++++++
T Consensus 390 ~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~vl 431 (431)
T d1zoda1 390 SMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL 431 (431)
T ss_dssp ECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 63 2333344554 689999999999999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2e-63 Score=495.35 Aligned_cols=388 Identities=21% Similarity=0.311 Sum_probs=314.4
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
.+++.+..+++.... |. ++|+++++++|+|+||.|||+||||.+++++.+|||+||+|.+|+.+|+++..
T Consensus 3 ~~~~~~~~~~~~~~~-------y~---p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~ 72 (404)
T d1z7da1 3 PEDYINNELKYGAHN-------YD---PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT 72 (404)
T ss_dssp HHHHHHHHHHHBCCC-------CC---CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCCC-------CC---CCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCC
Confidence 356666666665432 22 34999999999999999999999999999999999999999999999999843
Q ss_pred C-CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc--------CCceEEEEeCCCCCCchhHHhhcC
Q 011856 133 S-FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 133 ~-~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
. .........++++++...+++.+.+.|++||++|++.|++++|.++ .+..++.+.++|||.+.......+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~ 152 (404)
T d1z7da1 73 ICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISAST 152 (404)
T ss_dssp CCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------
T ss_pred CcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccc
Confidence 2 2223333344555544555578999999999999999999998764 335799999999999888777665
Q ss_pred CCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 011856 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ll 283 (476)
........ ......+..+|+++.+.++..+.. +++++||+||+++++|.+.|+++||++|+++|++||++|
T Consensus 153 ~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~--~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~ll 223 (404)
T d1z7da1 153 TKKCTSNF-------GPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLF 223 (404)
T ss_dssp --------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEE
T ss_pred ccccccCC-------CCCCccccccccchHHHHHHHhcC--CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 53322111 111235788899999999988864 489999999999999999999999999999999999999
Q ss_pred EEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHH
Q 011856 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (476)
Q Consensus 284 I~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal 361 (476)
|+|||+||| |+|.+|+++++|+.|||+|+||++++| +|+|++++++++++.+. +..+++||++||++|+|++++|
T Consensus 224 I~DEV~tGfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~a~L 300 (404)
T d1z7da1 224 VADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK---PGEHGSTYGGNPLAASICVEAL 300 (404)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCC---TTCCCCTTTTCHHHHHHHHHHH
T ss_pred EEEcCccCCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCC---CCCcCcCCCCCcchhhhhhhhh
Confidence 999999999 999999999999999999999999988 79999999999999887 4568899999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEe
Q 011856 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 441 (476)
+.++++++.+++.++++++.+.|.+...+++.+.++++.|+|++++|.++... ..++...|+++||++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~------------~~~~~~~l~~~Gl~~ 368 (404)
T d1z7da1 301 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN------------VLDICLKLKENGLIT 368 (404)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCC------------HHHHHHHHHHTTEEC
T ss_pred hhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCccc------------HHHHHHHHHhCCeEE
Confidence 99988999999999999999999999989999999999999999999764322 246778899999999
Q ss_pred ccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.+.+.+++ ++++|+++||+++++|+++++++
T Consensus 369 ~~~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 369 RDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 9887776666 68899999999999999999874
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-63 Score=494.21 Aligned_cols=380 Identities=25% Similarity=0.335 Sum_probs=320.5
Q ss_pred Ce-EEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011856 82 PI-VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 82 p~-~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~e 156 (476)
|+ .+++++|+|+||.|||+||||.++++++++||+||+|.+|+++|++++.+ ...+++...++++++.+..| +.+
T Consensus 25 p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 104 (429)
T d1s0aa_ 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcc
Confidence 55 48899999999999999999999999999999999999999999998643 23567888999999999987 678
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-----CCCCCCCCCCCCcee
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETL 226 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~ 226 (476)
+++|++||+||++.|++++|.++ ++.+||.++++|||.+..++..++........ +.....+........
T Consensus 105 ~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T d1s0aa_ 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred eeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccccccccc
Confidence 99999999999999999999874 45689999999999999998887653221111 000011111111122
Q ss_pred eccCCCHHHHHHHHhcCCCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccC
Q 011856 227 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 304 (476)
Q Consensus 227 ~~~~~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g 304 (476)
..++++++++++.+.++++++++||+||++ +.+|.+.|+++|+++|+++|++||++||+|||++|| |+|.+++++++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~ 264 (429)
T d1s0aa_ 185 EWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAE 264 (429)
T ss_dssp CCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred ccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccce
Confidence 223446788888887777899999999997 567888999999999999999999999999999999 999999999999
Q ss_pred CCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 305 VTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 305 ~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
+.||++|+||++++| +|+|++++++++++.+.+. +.+.|++||++||++|++++++|+.++++++.+++++++++|+
T Consensus 265 v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 344 (429)
T d1s0aa_ 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR 344 (429)
T ss_dssp CCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHH
Confidence 999999999999876 8999999999999988642 3467889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~ 459 (476)
++|+++. +++.+.++++.|+|+++++..+. ...++...|+++|+++.+.+ +.+++ ++++|++|
T Consensus 345 ~~L~~l~-~~~~v~~vrg~Gl~~~~e~~~~~-------------~~~~~~~~~~~~Gl~~~~~g-~~i~~~Ppl~it~~e 409 (429)
T d1s0aa_ 345 EQLAPAR-DAEMVADVRVLGAIGVVETTHPV-------------NMAALQKFFVEQGVWIRPFG-KLIYLMPPYIILPQQ 409 (429)
T ss_dssp HHHGGGG-GCTTEEEEEEETTEEEEEESSCB-------------CHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHH
T ss_pred HHHHHhc-cCCceEEEeecccEEEEEecCcc-------------cHHHHHHHHHHCCcEEEecC-CEEEEeCCcCCCHHH
Confidence 9998864 57788899999999999996432 12568889999999998876 45555 58999999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011856 460 IQHTITAAEKVKMRFLF 476 (476)
Q Consensus 460 i~~~~~~l~~~~~~~~~ 476 (476)
||+++++|+++++++.|
T Consensus 410 id~~~~~l~~al~e~~~ 426 (429)
T d1s0aa_ 410 LQRLTAAVNRAVQDETF 426 (429)
T ss_dssp HHHHHHHHHHHTSSGGG
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999988754
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=7.3e-63 Score=498.40 Aligned_cols=394 Identities=17% Similarity=0.191 Sum_probs=321.3
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..++|++++++++.+++.+.+..+ +|+++++|+|+|+||.|||+||||.+++++++|||+||+|.+|+.+
T Consensus 11 ~~pgp~s~~l~~~~~~~~~~~~~~----------~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ 80 (461)
T d1ohwa_ 11 EVPGPRSRELMKQLNIIQNAEAVH----------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQ 80 (461)
T ss_dssp CSSCHHHHHHHHHHHHHSCCTTCC----------CCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHhcCCCCCC----------CCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHH
Confidence 566889999999999988765422 3899999999999999999999999999999999999999999999
Q ss_pred HHHhcC---C----CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc--------------------
Q 011856 127 TMKKGT---S----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------------------- 178 (476)
Q Consensus 127 ~l~~~~---~----~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-------------------- 178 (476)
|+++.. . ...+..+.++|++++.+..+ +.++++|++||+||++.|+|+||.+
T Consensus 81 q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d1ohwa_ 81 PQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCM 160 (461)
T ss_dssp GGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhh
Confidence 887631 1 12244566788888888776 6889999999999999999999865
Q ss_pred ------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeecc------------CCCHHHHHHH
Q 011856 179 ------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP------------FNDVSALENL 239 (476)
Q Consensus 179 ------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~d~~~le~~ 239 (476)
+++.+||.+.++|||++..++..++........ +...+.... ......+ .++.++++++
T Consensus 161 ~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (461)
T d1ohwa_ 161 INQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP--FPRLKYPLEEFVKENQQEEARCLEEVEDL 238 (461)
T ss_dssp TTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEEC--CCCCCSSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccc--cccccccccccccccchhhhhhHHHHHHH
Confidence 446689999999999999999998875332111 111110000 0000111 0124555555
Q ss_pred Hh---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC--CCchhhhh
Q 011856 240 FE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPDLTTLG 313 (476)
Q Consensus 240 l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pDi~t~s 313 (476)
+. .+++++++||+||+++++|.+.++++||++|+++|++||++||+|||++|| |+|.+|+++++|+ .||++|+|
T Consensus 239 ~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g 318 (461)
T d1ohwa_ 239 IVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS 318 (461)
T ss_dssp HHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC
T ss_pred HHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh
Confidence 53 456789999999999999999999999999999999999999999999999 9999999999998 49999999
Q ss_pred hhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011856 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG- 392 (476)
Q Consensus 314 K~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 392 (476)
|++++|.+.. ... +.......+.+||++||++|++++++|+.++++++.+++++++++|+++|+++..+++
T Consensus 319 K~l~~g~~~~----~~~----~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~ 390 (461)
T d1ohwa_ 319 KKMMTGGFFH----KEE----FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ 390 (461)
T ss_dssp GGGSSEEEEE----CGG----GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccccccccc----ccc----cccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999754332 222 2233456788999999999999999999999899999999999999999999988885
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
++.+|+|.|+|+++++. +.....++...|+++|+++.+.+.+.+++ ++++|++|+|+++++|+++
T Consensus 391 ~i~~vrG~Gl~~~ie~~-------------~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 391 FISRVRGRGTFCSFDTP-------------DESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp TCEEEEEETTEEEEECS-------------SHHHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred ceEEeeeeeEEEEEEcC-------------CHHHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 68899999999999984 33455788999999999999877666665 6899999999999999999
Q ss_pred HHH
Q 011856 471 KMR 473 (476)
Q Consensus 471 ~~~ 473 (476)
+.+
T Consensus 458 l~e 460 (461)
T d1ohwa_ 458 LAD 460 (461)
T ss_dssp HHT
T ss_pred Hhc
Confidence 976
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-41 Score=336.84 Aligned_cols=343 Identities=20% Similarity=0.255 Sum_probs=272.7
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCC-cHHHHHHHHHHHHh-cCCCCC------CCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK-GTSFGA------PCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~-~~~~~~------~~~~~~~la~~l~~~~~ 153 (476)
..++++++|+++||.||++||||+++ +|||+. ||+|++|+++++++ +..++. ..+...+|.+++++++
T Consensus 28 ~~~i~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~- 103 (401)
T d1fc4a_ 28 ERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL- 103 (401)
T ss_dssp CCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-
T ss_pred ceeccCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-
Confidence 45788999999999999999999999 999995 99999999999988 444332 3677778888888888
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.+.++++|||++|+..+++ .+.+++++|+.+...|.+....+...+ ..+..++++|.
T Consensus 104 g~e~al~~~SG~~An~~~i~---~l~~~~d~i~~d~~~h~s~~~G~~~~~-------------------a~~~~~~~~d~ 161 (401)
T d1fc4a_ 104 GMEDAILYSSCFDANGGLFE---TLLGAEDAIISDALNHASIIDGVRLCK-------------------AKRYRYANNDM 161 (401)
T ss_dssp TCSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHTSC-------------------SEEEEECTTCH
T ss_pred cCCceEEecchhhhhHHHHH---HhcCCCcEEEeCCcchHHHHccccccC-------------------ceEEEEcCCCh
Confidence 78999999999999999998 677888888888888876554433222 24677889999
Q ss_pred HHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcc--ccccchhhccCCC--
Q 011856 234 SALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR--LAYGGAQEYFGVT-- 306 (476)
Q Consensus 234 ~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r--~g~~~~~~~~g~~-- 306 (476)
+++++++++ .+...++|++|+++++.|.+.| |++|++||++||++||+||+|+++. ....+..+++++.
T Consensus 162 ~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~ 237 (401)
T d1fc4a_ 162 QELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR 237 (401)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred HHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence 888887753 3456789999999999999999 9999999999999999999997652 2335667788875
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (476)
+|++ ||||+++ |.+.|++.+++++++.+....+.+.+++ +.+|..+++++++++.+.. ++++++++++.+++++.
T Consensus 238 ~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~-~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~ 315 (401)
T d1fc4a_ 238 VDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSN-SLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ 315 (401)
T ss_dssp CSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSC-CCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcC-CCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhh
Confidence 4554 7999996 5668999999999998875444455544 6778888888999988776 77889999999999999
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc-------eEE--eCC
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLA 454 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-------~~~--~~~ 454 (476)
+.+..... ....+.++.+.+. +...+..+.+.|+++||++.+..+|. +|+ +..
T Consensus 316 l~~~g~~~-----~~~~~pIv~v~~~-------------~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~ 377 (401)
T d1fc4a_ 316 MSAAGFTL-----AGADHAIIPVMLG-------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAA 377 (401)
T ss_dssp HHHTTCCB-----CCSSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTT
T ss_pred hcccCCcc-----CCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCC
Confidence 88764321 1223445555553 34456788999999999998766543 454 689
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 011856 455 HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~ 474 (476)
||+||||+++++|+++.+++
T Consensus 378 hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 378 HTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-38 Score=312.53 Aligned_cols=337 Identities=17% Similarity=0.183 Sum_probs=268.6
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l~~~~~ 153 (476)
++++.+++|.++. +||++||||+++ +|||+ .||++++++.+++++ |+.. .+..+...+|.++|++++
T Consensus 22 ~~~~~~~~g~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~- 96 (383)
T d1bs0a_ 22 RYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL- 96 (383)
T ss_dssp CCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-
T ss_pred ccccCCCCCCeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc-
Confidence 5667899999997 999999999999 99999 599999999999998 4322 245788888999998888
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.|.+++++||+.|+..++. ++.+++++++.+...|.+........+ ..++.++|||+
T Consensus 97 g~e~al~~~SG~~an~~~i~---al~~~~d~v~~d~~~h~si~~g~~~~~-------------------~~~~~~~hnd~ 154 (383)
T d1bs0a_ 97 GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLSP-------------------SQLRRFAHNDV 154 (383)
T ss_dssp TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTSS-------------------SEEEEECTTCH
T ss_pred CCCceEEecccchhhHHHHH---hhcCCCceEEeeccccHHHhhccccCC-------------------CcceEecchHH
Confidence 78999999999999999998 788899999999999887655543322 25788999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh-
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT- 310 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~- 310 (476)
++||+.+.+.+++..+|++|++++++|.+.| +++|.++|++||++|++||+|+ |. +....+..+++++.+|++
T Consensus 155 ~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~ 230 (383)
T d1bs0a_ 155 THLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLV 230 (383)
T ss_dssp HHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEE
T ss_pred HHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccc
Confidence 9999999987778889999999999999999 9999999999999999999994 44 444456678899988876
Q ss_pred -hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH
Q 011856 311 -TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 311 -t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 386 (476)
++||++|. ..|+++++.++++.++...+.+.+++ ..+|..+++++++++.++. +...+++.++..++++.|.+
T Consensus 231 ~t~~ka~g~--~Gg~v~~~~~~~~~l~~~~~~~~~s~-~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 307 (383)
T d1bs0a_ 231 VTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYST-SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307 (383)
T ss_dssp EESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSB-CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccc--cccccccchhHHHHHHhhchhhhhcc-cccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 58888864 58889999999998875445555544 6678888888999988765 45566777777888877765
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc-------eEE--eCCCcH
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSS 457 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-------~~~--~~~~t~ 457 (476)
+. +. ...+.+.++.+.+. +...+.++.+.|+++||++.+..+|. +|+ +..||+
T Consensus 308 ~g----~~-~~~~~s~Ii~v~~g-------------~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~ 369 (383)
T d1bs0a_ 308 LP----FT-LADSCSAIQPLIVG-------------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEM 369 (383)
T ss_dssp SS----CE-ECSCCSSBCCEEEE-------------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCH
T ss_pred cC----Cc-cCCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCH
Confidence 42 21 11233444444442 44556789999999999998766543 444 688999
Q ss_pred HHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKV 470 (476)
Q Consensus 458 e~i~~~~~~l~~~ 470 (476)
||||+++++|+.+
T Consensus 370 edid~l~~~L~~~ 382 (383)
T d1bs0a_ 370 QDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=5.1e-34 Score=278.88 Aligned_cols=339 Identities=21% Similarity=0.199 Sum_probs=259.6
Q ss_pred eEEEeecCCEE---E---EcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHH
Q 011856 83 IVFDSVKGSHM---W---DIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMV 148 (476)
Q Consensus 83 ~~~~~~~G~~~---~---d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~------~~~~~~~~~la~~l 148 (476)
..+++..|.+. + +.++++++||+++ +|||. .||++++++.+++++ |... .+..+...+|.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l 99 (396)
T d2bwna1 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99 (396)
T ss_dssp CEEEECTTSTTEEEEECTTSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred cccccccCCCCcceEeecCCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence 45667777531 2 2346899999999 99999 699999999999998 4332 23578888999999
Q ss_pred HhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeec
Q 011856 149 ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228 (476)
Q Consensus 149 ~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (476)
++++ +.|.+++++||+.||..++... ...+++++|..+...|.+....+.+++. ++..+
T Consensus 100 A~~~-g~e~all~~sG~~An~~~i~~l-~~~~~~d~i~~D~~~Hasi~~g~~ls~a-------------------~~~~f 158 (396)
T d2bwna1 100 AGLH-QKEAALVFSSAYNANDATLSTL-RVLFPGLIIYSDSLNHASMIEGIKRNAG-------------------PKRIF 158 (396)
T ss_dssp HHHT-TCSEEEEESCHHHHHHHHHHHH-HHHSTTCEEEEETTCCHHHHHHHHHSCC-------------------CEEEE
T ss_pred HHHh-CCCceeeeecchHHHHHHHHHH-hcccCCCceeehhhhhhccchhhhcccc-------------------CceEe
Confidence 9999 7899999999999999999832 1246778999999999876655554443 46788
Q ss_pred cCCCHHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCC
Q 011856 229 PFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV 305 (476)
Q Consensus 229 ~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~ 305 (476)
+|||+++++++++.. +.....|++|.++++.|.+.| |++|.+||++||++|++||+| .|. +....+..+++++
T Consensus 159 ~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~ 234 (396)
T d2bwna1 159 RHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL 234 (396)
T ss_dssp CTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTC
T ss_pred ecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCC
Confidence 999999999988753 345678999999999999999 999999999999999999999 566 4444556677777
Q ss_pred CC--chh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHH
Q 011856 306 TP--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 378 (476)
Q Consensus 306 ~p--Di~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 378 (476)
.+ |++ ||||++|+ ..|++++++++++.++...+.+.++| +.+|..+++++++++.+.. +..+++++.+.+
T Consensus 235 ~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~l~~~~~~~ifSt-alpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~ 311 (396)
T d2bwna1 235 MHRIDIFNGTLAKAYGV--FGGYIAASARMVDAVRSYAPGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAK 311 (396)
T ss_dssp GGGCSEEEEESSSTTCS--CCEEEEECHHHHHHHHHHCHHHHTSB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred ceeeeeeeecccccccc--cccccchhHHHHHHHHhhcchhhhcc-cCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 44 544 79999985 36778999999999976555556655 6678888888899998765 334667778888
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcc-------eE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-------GF 450 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~-------~~ 450 (476)
++++.|.++..... ...+.++.+.+. +......+++.|+ ++||++.+..+|. +|
T Consensus 312 ~~~~~l~~~g~~~~-----~~~spIvpv~ig-------------~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlR 373 (396)
T d2bwna1 312 VLKMRLKALGMPII-----DHGSHIVPVVIG-------------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLR 373 (396)
T ss_dssp HHHHHHHHHTCCBC-----CCSSSCEEEECC-------------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEE
T ss_pred HHHHHHHhcCCCcC-----CCCCCEEEEEeC-------------CHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEE
Confidence 99988887643211 123444555542 3455567887766 6899998776553 45
Q ss_pred E--eCCCcHHHHHHHHHHHHHH
Q 011856 451 T--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 451 ~--~~~~t~e~i~~~~~~l~~~ 470 (476)
+ +..||++|||+++++|+++
T Consensus 374 i~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 374 FTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEeCccCCHHHHHHHHHHHHHh
Confidence 5 6899999999999999975
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.6e-29 Score=249.05 Aligned_cols=332 Identities=17% Similarity=0.189 Sum_probs=217.4
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|+++|||..| ++---.+++|++++.++++++. .|+ +..++++++++++.+..+ .+++|++|+|+++|+.
T Consensus 29 ~G~~vi~l~~g---~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~ 105 (382)
T d1b5pa_ 29 QGVDLVALTAG---EPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (382)
T ss_dssp TTCCCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHH
Confidence 35567888877 4432358999999999998753 232 234677888888877654 5789999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++. ....++.|++.+++|.+.. ..+...|..+...+.....+. ..|++++++.+++ ++++
T Consensus 106 ~~~~~--l~~~gd~vl~~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 167 (382)
T d1b5pa_ 106 NLFQA--ILDPGDEVIVLSPYWVSYP-EMVRFAGGVVVEVETLPEEGF------------VPDPERVRRAITP---RTKA 167 (382)
T ss_dssp HHHHH--HCCTTCEEEEEESCCTHHH-HHHHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCCT---TEEE
T ss_pred HHHHH--hCCCCCEEEECCCCcHHHH-HHHHHhcCeEEEEeccccccc------------CCCHHHHHHhCCC---CCeE
Confidence 99984 2234577888899998754 344445543332211111111 0178888887753 5655
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc----hhhhhhhcC-CCCcEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD----i~t~sK~lg-~G~~iG 323 (476)
+++...+|++|.+.+.++ +++|.++|++||++||+||+|.++ ..+...... ...+| +.++||.++ +|+|+|
T Consensus 168 i~~~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~s~SK~~~~~GlR~G 244 (382)
T d1b5pa_ 168 LVVNSPNNPTGAVYPKEV-LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPG--RVAPEHTLTVNGAAKAFAMTGWRIG 244 (382)
T ss_dssp EEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGG--GTCTTTEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCcchhCCHHH-HHHHHHHHHHcCeEEEEEccccceecCCCCCCHH--HcCCCCEEEEecchhhccCcHhheE
Confidence 555444667888776555 999999999999999999999988 555433221 12223 237999999 899999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGT----YEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+++++++++.+.. .....+.+.+.+.+.++.+.+..... +.+ ++.++++.+.+.+.+.+ .++....+
T Consensus 245 ~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~p 317 (382)
T d1b5pa_ 245 YACGPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA----LGLKAVRP 317 (382)
T ss_dssp EEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCCBCCC
T ss_pred EEEECHHHHHHHHH---HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh----cCCeEecC
Confidence 99999999887652 22233445566665555555432111 222 33333344444444443 34333334
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
..|.++++.+..... + ...+.+.|+++||.+.|+. .+++|+++..++|++++++++|++++
T Consensus 318 ~gg~~~~~~~~~~~~---------~---~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 318 SGAFYVLMDTSPIAP---------D---EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp SBTTEEEEECTTTCS---------S---HHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred CceEEEeEeCCCCCC---------C---HHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 556777877743111 1 2467788899999999873 34689999889999999999998753
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.96 E-value=8.8e-29 Score=244.17 Aligned_cols=338 Identities=12% Similarity=0.111 Sum_probs=219.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-CCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-FGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~-~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|+++|||..| ++-.-.++.|++|+++.++++.. |+. ..++++++++++.+..+ .+++|++|+|+++|+.
T Consensus 28 ~g~~vi~l~~G---~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~ 104 (388)
T d1j32a_ 28 EGIDVCSFSAG---EPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCC---CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence 35567888877 44323589999999999987543 322 23667778888776653 5789999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++. ....++.|++.+++|.++.. .+...+..+...+.....+. .-|+++|++.++. ++++
T Consensus 105 ~~~~~--~~~~gd~Vlv~~P~y~~~~~-~~~~~~~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 166 (388)
T d1j32a_ 105 NLMLA--MIEPGDEVIIPAPFWVSYPE-MVKLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTKL 166 (388)
T ss_dssp HHHHH--HCCTTCEEEEESSCCTHHHH-HHHHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHHHH--HhCCCCEEEEcCCCcHHHHH-HHHHhcCeEEEEeccccccc------------CCCHHHHHHhCCC---CCeE
Confidence 99984 23456788888888877543 33333333222111111111 0179999988864 4555
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC-------chhhhhhhcC-CCC
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-------DLTTLGKIIG-GGL 320 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-------Di~t~sK~lg-~G~ 320 (476)
+++...+|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+..... .....+ -+.+|||.++ +|+
T Consensus 167 ~~~~~P~NPTG~~~~~~~-~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~Gl 244 (388)
T d1j32a_ 167 LVFNTPSNPTGMVYTPDE-VRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEECCCCCCCCcccchhh-hhhhhcccccCCeEEEchhhhhcccccCCCCCC-HHHhCcccccceeEecCChhhhhcchh
Confidence 554444667888776555 999999999999999999999777 43322111 111112 1237999999 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+||+++++++++.+.. .......+.+..++.++...++..++ .+.++.++++.+.+.+.|++. .++....+
T Consensus 245 RvG~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~~~~~p 318 (388)
T d1j32a_ 245 RVGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM---PGLECPKP 318 (388)
T ss_dssp CCEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC---TTCBCCCC
T ss_pred HeEEEEECHHHHHHHHH---hhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC---CCCEecCC
Confidence 99999999999887752 22334456677788777766652211 223344444444444444432 12332334
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..|.++++.+..... ...++++.|+ ++||.+.|+. .+++|+++..+++++++++++|+++++.
T Consensus 319 ~gg~~l~~~l~~~~~------------~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 319 DGAFYMFPSIAKTGR------------SSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CBTTEECCBCGGGTC------------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCC------------CHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 456666666642110 1245666665 6699999863 4568999989999999999999999988
Q ss_pred hh
Q 011856 474 FL 475 (476)
Q Consensus 474 ~~ 475 (476)
++
T Consensus 387 l~ 388 (388)
T d1j32a_ 387 IL 388 (388)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=9.9e-28 Score=236.75 Aligned_cols=338 Identities=15% Similarity=0.093 Sum_probs=215.0
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~a 171 (476)
.+|||..|. ..++ .++.|++++.++++++. .|+. ..++++++++++.+... ..++|++++|+++++..+
T Consensus 26 dvi~l~~g~--p~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~ 102 (388)
T d1gdea_ 26 DVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 102 (388)
T ss_dssp TCEECCCCS--CCSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEECCCCC--CCCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHH
Confidence 468887773 1222 58999999999998753 3322 24677777777765332 457899999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++. ....++.|++.+++|.++... +...|..+...+.....+. .-|+++|++.+++ ++++++
T Consensus 103 ~~~--l~~~gd~vlv~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~i~ 164 (388)
T d1gdea_ 103 LSA--FLKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEF------------RLNVDELKKYVTD---KTRALI 164 (388)
T ss_dssp HTT--TCCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTT------------CCCHHHHHHHCCT---TEEEEE
T ss_pred HHH--hcCCCCEEEECCCCcHHHHHH-HHHcCCEEEEeecccccCC------------CCCHHHHHHhCcc---CCeEEE
Confidence 883 234567888889998875444 4445554332221111110 0179999998864 466665
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCc-h---hhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPD-L---TTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pD-i---~t~sK~lg-~G~~iG~ 324 (476)
+...+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.. .....+...++ + .+|||.++ +|+|+||
T Consensus 165 ~~~P~NPtG~~~s~~~-~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ 243 (388)
T d1gdea_ 165 INSPCNPTGAVLTKKD-LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF 243 (388)
T ss_dssp EESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEE
T ss_pred ECCCcCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEE
Confidence 5555667888776555 999999999999999999999887 43322 11112222222 2 27999999 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
+++++++++.+.. .....+.+.+.+.+.++.++++.....+..++.++..+..++.+.+.....+.....+..|.++
T Consensus 244 ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl 320 (388)
T d1gdea_ 244 VAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI 320 (388)
T ss_dssp EECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred EEeeccchhhhhh---ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEE
Confidence 9999998877762 2233455666777766666653111111122222222222222333333334333334556677
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+.+.. ....++++.|+ ++||.+.|+. .+++|+++..+++++++++++|++++++.
T Consensus 321 ~~~l~~~~------------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 321 FPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp CCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCC------------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 77764211 11246666665 6799998763 34589999899999999999999999874
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.95 E-value=6.9e-26 Score=225.57 Aligned_cols=352 Identities=15% Similarity=0.091 Sum_probs=226.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACM 169 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~---~~~~~~~~la~~l~~~~~---~-~e~v~~~~sGseA~~ 169 (476)
.||+..| ++....++.+++++.+++.+.. .|+ +..++++++++++.+.++ . .++|++|+|+++|+.
T Consensus 28 ~I~L~~G---~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 28 PLNLGQG---FPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CEECSSS---CCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEccCC---CCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 3777777 4433357889999999987532 232 234778889999887654 3 478999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeecc-CCCHHHHHHHHhcCCCCe
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP-FNDVSALENLFENNKGEI 247 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~ 247 (476)
.+++. ....++.|++.+++|..+.... ...+..+..+++ +..... ...... ..+.+.+++... ..+
T Consensus 105 ~~~~~--l~~~gd~vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~ 172 (418)
T d2r5ea1 105 ATIQG--HVDEGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKTGG------TISSADWVLDNNELEALFN---EKT 172 (418)
T ss_dssp HHHHH--HCCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECEESCCSS------CEEGGGEECCHHHHHHHCC---TTE
T ss_pred hhhhh--ccccccceeccccccchhhHHH-HHcCCeEEEEEeccccccc------chhhhhhhhhHHHHhhhhh---ccc
Confidence 99984 2345778888899988854433 333433222211 111110 000000 125677766654 367
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc--chhhccCCCCch---hhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDL---TTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pDi---~t~sK~lg-~G~ 320 (476)
+++++.+.+|++|.+.+.++ +++|.++|++||+++|.||+|..+ ..+.. ......+..+.+ .++||.++ +|+
T Consensus 173 ~~~~i~~p~NPtG~~~s~e~-~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGl 251 (418)
T d2r5ea1 173 KMIIINTPHNPLGKVMDRAE-LEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 251 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred cceecCCcCccccccccHHH-HHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCc
Confidence 77777777777888776555 999999999999999999999877 43321 111222222222 27999998 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+.. .....+++.+.+.+.++.+.+... +. +++++++++..+..++.|.+.+.+.++..
T Consensus 252 RiG~~~~~~~~i~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 328 (418)
T d2r5ea1 252 KIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 328 (418)
T ss_dssp CCEEEESCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccccccccchhhhhhhh---cccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcc
Confidence 99999999999888762 223345566777776666655432 11 45555555544444444544444556655
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC-----------CcceEEeCCCcHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (476)
..+..|.++|+.+.... .........+.....+|++.|++ +||.+.|+. .+++|+++..++|+++++
T Consensus 329 ~~P~gg~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a 407 (418)
T d2r5ea1 329 TVPQGGYFMVADWSSLD-SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 407 (418)
T ss_dssp EECSBSSEEEEECGGGS-TTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHH
T ss_pred cCCCceeEEEEEccccc-ccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHH
Confidence 56677888888885321 11111111222334677887775 599998863 134799998899999999
Q ss_pred HHHHHHHHH
Q 011856 464 ITAAEKVKM 472 (476)
Q Consensus 464 ~~~l~~~~~ 472 (476)
+++|++++.
T Consensus 408 ~~rl~~~lg 416 (418)
T d2r5ea1 408 AEILRKWKG 416 (418)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999875
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.1e-26 Score=227.52 Aligned_cols=329 Identities=18% Similarity=0.174 Sum_probs=209.0
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
.||+..| ++-.-.+|.+++|+++.+++...|+ +.....+|.+.+++++. ++++|++++|+++++..+++. ...
T Consensus 27 ~I~ls~g---~p~~~~p~~i~~al~~~l~~~~~Y~-~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~--l~~ 100 (368)
T d1v2da_ 27 AVNLGQG---FPSNPPPPFLLEAVRRALGRQDQYA-PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS--LVG 100 (368)
T ss_dssp CEECCCC---SCSSCCCHHHHHHHHHHTTTSCSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH--HCC
T ss_pred CEEecCC---CCCCCCCHHHHHHHHHHhhcccCCC-CCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhc--ccc
Confidence 3777666 3322257999999999887654343 22223455666666655 678999999999999999984 234
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
.++.|++.+++|+... ......+..+....++... +... -|++.+++.+++ ..+++++...+|++
T Consensus 101 ~~d~v~~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~--------~~~~---~d~~~l~~~~~~---~~~~i~~~~p~NPt 165 (368)
T d1v2da_ 101 PGDEVVVLEPFFDVYL-PDAFLAGAKARLVRLDLTP--------EGFR---LDLSALEKALTP---RTRALLLNTPMNPT 165 (368)
T ss_dssp TTCEEEEEESCCTTHH-HHHHHTTCEEEEEECEEET--------TEEE---CCHHHHHTTCCT---TEEEEEEESSCTTT
T ss_pred ccccccccCCcchhhh-hHHHhcCCccceecccccc--------cccc---CCHHHHHHhhcc---CceEEEEcCCCCcc
Confidence 5567777777777644 3333344332221111000 0011 178999888864 45555554446677
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC--CCchhhhhhhcC-CCCcEEEEEecHHHHHhh
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l 335 (476)
|.+.+.++ +++|.++|++||+++|+||+|..+ ............. ...+.++||.++ +|+|+||+++++++++.+
T Consensus 166 G~~~~~~~-l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~ 244 (368)
T d1v2da_ 166 GLVFGERE-LEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRL 244 (368)
T ss_dssp CCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHH
T ss_pred cccCCHHH-HHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchh
Confidence 87766555 999999999999999999999655 3322211111111 112347899888 689999999999988877
Q ss_pred cCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcC
Q 011856 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (476)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (476)
.. .....+.+.+++.+.++.+++......++.+++++..+..++.+.+...++++....+..|.++++.+...
T Consensus 245 ~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~---- 317 (368)
T d1v2da_ 245 AG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW---- 317 (368)
T ss_dssp HH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC----
T ss_pred hh---hhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCcc----
Confidence 62 33444567778888777777765544445544444333333334333344455444444567777776321
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...+.|.++||++.|+. .+++|+++..+++++++++++|++++
T Consensus 318 -------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 318 -------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp -------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 12245668999998752 24579998889999999999999864
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.95 E-value=1.5e-26 Score=228.50 Aligned_cols=341 Identities=14% Similarity=0.065 Sum_probs=210.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~a 171 (476)
.|+.+|||..| ++---.+|.|++|+.+.++++. .|. ...++++++++++.+.++ .+++|++|+|+++|+..+
T Consensus 29 ~g~~vi~l~~g---~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~ 105 (394)
T d1c7na_ 29 VGNEVVPLSVA---DMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA 105 (394)
T ss_dssp CCTTCCCCCSS---SCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred cCCCeEEccCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence 46778888776 4322268999999999998753 221 234677788888876643 578999999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++. ...+++.|++.++.|...........+..+ ..+.....+ ... .|.+.++..+.. +++++++
T Consensus 106 ~~~--~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v-~~~~~~~~~--------~~~---~d~~~~~~~~~~--~~~~~i~ 169 (394)
T d1c7na_ 106 VRE--FTKPGDGVIIITPVYYPFFMAIKNQERKII-ECELLEKDG--------YYT---IDFQKLEKLSKD--KNNKALL 169 (394)
T ss_dssp HHH--HCCTTCEEEECSSCCTHHHHHHHTTTCEEE-ECCCEEETT--------EEE---CCHHHHHHHHTC--TTEEEEE
T ss_pred hcc--ccccccccccccCcccchhhHHhhhhhccc-ccccccccc--------ccc---chhhhhhhhhcc--ccceEEE
Confidence 984 334567788888888775443332222211 111000000 000 267777777753 2577777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc---c---CCCCchhhhhhhcC-CCCcEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---F---GVTPDLTTLGKIIG-GGLPVG 323 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~---~---g~~pDi~t~sK~lg-~G~~iG 323 (476)
+...+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+....... . ....-+.++||.++ +|+|+|
T Consensus 170 l~~P~NPTG~v~s~~~-l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g 248 (394)
T d1c7na_ 170 FCSPHNPVGRVWKKDE-LQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS 248 (394)
T ss_dssp EESSBTTTTBCCCHHH-HHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred ecccccccceeccHHH-hhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccc
Confidence 7666777888877666 999999999999999999999888 4443211100 0 11111236999999 799999
Q ss_pred EEEecH-HHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 324 AYGGRR-DIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 324 ~~~~~~-~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
|+++++ .+.+.+.. .....+. +.+...++++........+ ++..+.++++.+.+.+.++.... ++....+.
T Consensus 249 ~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~p~ 323 (394)
T d1c7na_ 249 NIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHP--EIKAPLIE 323 (394)
T ss_dssp EEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSBCCCCS
T ss_pred cccccChhhhhhhhh---hhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccc--ceeecCCC
Confidence 997754 56565542 1111121 2223333333333332211 33334444444444444443321 22222234
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.|.++++.+..... ...++++.|+++ ||.+.|+. .+.+|+++..++|+|++++++|+++++
T Consensus 324 g~~~~~~~~~~~~~------------~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~ 391 (394)
T d1c7na_ 324 GTYLQWIDFRALKM------------DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALK 391 (394)
T ss_dssp BSSEEEEECGGGCC------------CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCC------------CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 45667777643111 125678888766 99998752 345799998899999999999999998
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 392 ~L 393 (394)
T d1c7na_ 392 DL 393 (394)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.8e-26 Score=220.44 Aligned_cols=335 Identities=13% Similarity=0.066 Sum_probs=210.7
Q ss_pred EecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHH
Q 011856 102 IDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~----~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ 174 (476)
|+|..+ .+---.+|.|.+|+.+.++.+.. +|+ .++++++++++.+.++ ++++|++++|+++++..+++
T Consensus 2 ~~~~~~---~~df~~p~~i~eal~~~~~~~~~-~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~- 76 (361)
T d1d2fa_ 2 LPFTIS---DMDFATAPCIIEALNQRLMHGVF-GYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIR- 76 (361)
T ss_dssp EECCSS---SCSSCCCHHHHHHHHHHHTTCCC-CCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHH-
T ss_pred cCcCCC---CCCCCCCHHHHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhh-
Confidence 555555 33222689999999999877532 222 3677788888877764 57899999999999999998
Q ss_pred HHhcc-CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 175 ARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 175 ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
.+. .++.|++.+++|.++ ...+...+..+.........+ .. ..|++.+++.+.+. +++++++.
T Consensus 77 --~l~~~gd~Vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~--------~~---~~d~~~~~~~~~~~--~~~~i~l~ 140 (361)
T d1d2fa_ 77 --QWSETGEGVVIHTPAYDAF-YKAIEGNQRTVMPVALEKQAD--------GW---FCDMGKLEAVLAKP--ECKIMLLC 140 (361)
T ss_dssp --HSSCTTCEEEEEESCCHHH-HHHHHHTTCEEEEEECEECSS--------SE---ECCHHHHHHHHTST--TEEEEEEE
T ss_pred --hccccccccccccccccch-hHHHHhhcceEEeeccccccc--------cc---ccccccchhhcccC--CceeEEec
Confidence 444 457888889888764 344444444332211110000 00 12789999998753 67777776
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC-ch---hhhhhhcC-CCCcEEEEEe
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DL---TTLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-Di---~t~sK~lg-~G~~iG~~~~ 327 (476)
+.+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..... .....+ +. .++||.++ +|+|+||+..
T Consensus 141 ~p~NPTG~~~s~~~-~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~ 218 (361)
T d1d2fa_ 141 SPQNPTGKVWTCDE-LEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPALTGAYGII 218 (361)
T ss_dssp SSCTTTCCCCCTTH-HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGGGCCEEEEE
T ss_pred ccccccccccchhh-hhhhhhhhhhhheeeeecccccccccccccccc-cccccccccccccccccccccccccceeeec
Confidence 66777888777666 999999999999999999999888 44322111 111222 22 36899998 7999999865
Q ss_pred c-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 328 R-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 328 ~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
. +...+..... .....+..+.+...+.+++.+++.... +.....++++.+.+.+.+.+.... +....+..|.++
T Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~p~gg~~~ 295 (361)
T d1d2fa_ 219 ENSSSRDAYLSA-LKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPE--LNWQIPQSTYLA 295 (361)
T ss_dssp CSHHHHHHHHHH-HHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCCCCCSBCSEE
T ss_pred chhHHHHHHhhh-cccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccc--ccccccCceeEE
Confidence 4 3332322110 000112223445555555555553321 334444555555555555544322 222233446677
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++..... ...+++..|+++ ||++.|+. .+.+|+++..+++++++++++|.++++++
T Consensus 296 ~~~l~~~~~------------~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 296 WLDLRPLNI------------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp EEECGGGCC------------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCC------------CHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 777642111 125778777765 99998762 23579998889999999999999999875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=1.4e-26 Score=228.85 Aligned_cols=343 Identities=14% Similarity=0.042 Sum_probs=214.3
Q ss_pred cCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhcCC-CCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTS-FGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~-~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA 167 (476)
.+|+++||+..|-. +...+ .++.+++|+.+.++.+.. |+. ..++++++++++.+.++ ..+++++++|++++
T Consensus 27 ~~G~~vi~l~~G~P-~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDP-VKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCG-GGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCC-CCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 35778899888732 12234 578899999999987542 332 24677788888877654 57899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+..+++. ....++.|++.+++|+.+.. .....|..+...+.....+. . -|++++++.+.+ ++
T Consensus 106 ~~~~~~~--~~~~Gd~vlv~~P~y~~~~~-~~~~~g~~~v~v~~~~~~~~---------~---~d~~~~~~~~~~---~~ 167 (395)
T d1xi9a_ 106 LQLIFGA--LLDPGDEILVPGPSYPPYTG-LVKFYGGKPVEYRTIEEEDW---------Q---PDIDDIRKKITD---RT 167 (395)
T ss_dssp HHHHHHH--HCCTTCEEEEEESCCHHHHH-HHHHTTCEEEEEEEEGGGTS---------E---ECHHHHHHHCCT---TE
T ss_pred hhhhhhh--hcCCCCEEEEcCCccccchh-hhhhcCCEEEEEeccccccc---------c---chHHHHHHhhcc---cc
Confidence 9999884 23456789999999987443 33334433222111100010 0 178888887753 45
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhhcC-CCCcE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPV 322 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~i 322 (476)
+++++...+|++|.+.+.++ +++|.++|++||+++|.||+|..+ ..+.........-...++ +|||.++ +|+|+
T Consensus 168 ~~v~l~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRv 246 (395)
T d1xi9a_ 168 KAIAVINPNNPTGALYDKKT-LEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 246 (395)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC
T ss_pred cEEEecCCCCCccchhhHHH-HHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhc
Confidence 55555444677888776555 999999999999999999999877 433322221111122333 7999999 79999
Q ss_pred EEEEec--HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-
Q 011856 323 GAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG- 397 (476)
Q Consensus 323 G~~~~~--~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v- 397 (476)
||++.. .+.+..+..........+.+.+.+++.++..+++..++ ++.++.++++.+.+.+.|++ .+.....
T Consensus 247 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~ 322 (395)
T d1xi9a_ 247 GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE----IPGISTTK 322 (395)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT----STTEECCC
T ss_pred EeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCceecC
Confidence 998542 22222221100011223455677788777777652211 22333444455555555543 3432222
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
+..|.++|+++...... + ..+++..++ ++||++.|+. .+++|++++.++|++++++++|+++
T Consensus 323 p~gg~~~~~~l~~~~~~--------~---~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~ 391 (395)
T d1xi9a_ 323 PQGAFYIFPKIEVGPWK--------N---DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 391 (395)
T ss_dssp CCBSSEECCEECSCSCS--------S---HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCeeEEEeEECCCCCCC--------C---HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 34577778887532211 1 134555555 6799998863 3458999988999999999999999
Q ss_pred HHH
Q 011856 471 KMR 473 (476)
Q Consensus 471 ~~~ 473 (476)
+++
T Consensus 392 l~e 394 (395)
T d1xi9a_ 392 MKE 394 (395)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=3.9e-25 Score=216.97 Aligned_cols=328 Identities=16% Similarity=0.159 Sum_probs=208.2
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-CC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-FG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~-~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
|+++||+..|.. .+. .++.+++++.+.+.++.. |+ +..++++++++++.+..+ +.+++++++|+++|+..
T Consensus 27 G~~vI~l~~G~p--~~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 103 (375)
T d1o4sa_ 27 GEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN 103 (375)
T ss_dssp TCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHH
T ss_pred CCCeEECCCcCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHH
Confidence 445677776621 222 578999999998887542 32 234667777777765543 57899999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++. ....++.|++.+++|..+..... ..+............+. ..|.+.++.... ..++++
T Consensus 104 ~~~~--l~~~gd~vlv~~P~y~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~~~~ 165 (375)
T d1o4sa_ 104 AFMA--LLDPGDEVIVFSPVWVSYIPQII-LAGGTVNVVETFMSKNF------------QPSLEEVEGLLV---GKTKAV 165 (375)
T ss_dssp HHHH--HCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECCGGGTT------------CCCHHHHHHTCC---TTEEEE
T ss_pred HHHH--HhCCCCEEEEccCccccchhhhh-ccccccccccccccccc------------cchhHHHHHhhc---cCccEE
Confidence 9984 22355678888988877543333 33332211111100010 115666665544 256555
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCc---hhhhhhhcC-CCCcEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD---LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pD---i~t~sK~lg-~G~~iG~ 324 (476)
++...+|++|.+.+. +.+++|.++|++|+++||.||+|..+ ..+. .......+.... +.++||.++ +|+|+||
T Consensus 166 ~l~nP~NPTG~~~s~-~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~ 244 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRR-EFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGY 244 (375)
T ss_dssp EEESSCTTTCCCCCH-HHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEeCCCCCccCCCCH-HHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccc
Confidence 555446778887765 44999999999999999999999766 3322 211122222222 337999999 8999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+.. .....+...+...+..+... ++. ....+.++++.+.+.+.|++. ++....+..|.
T Consensus 245 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~l~~~----g~~~~~p~gg~ 314 (375)
T d1o4sa_ 245 LISSEKVATAVSK---IQSHTTSCINTVAQYAALKA---LEVDNSYMVQTFKERKNFVVERLKKM----GVKFVEPEGAF 314 (375)
T ss_dssp EECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHHHHHHT----TCCCCCCSBSS
T ss_pred ccccccchhhhhh---hhccccccccccchhhhhhh---cccchhhhHHHHHHHHHHHHHHHHhc----CceEecCCccE
Confidence 9999998887752 22223334444444443332 222 344556666666666666654 33333344566
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
++|+.+..+ ..+++..|+ ++||++.|+. .+++|+++..+++++++++++|+++++
T Consensus 315 f~~~~~~~~---------------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 315 YLFFKVRGD---------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp EEEEECSSC---------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCC---------------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 778776421 134555544 6799999863 345899998899999999999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.94 E-value=1.2e-25 Score=219.06 Aligned_cols=322 Identities=16% Similarity=0.150 Sum_probs=206.9
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
...++|||++|. +++| .+|.+++++.+.+..... ||+....+|.+.++++++ ..++|++++|+++++..++.
T Consensus 20 ~p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~--Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~-- 92 (355)
T d1lc5a_ 20 SPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIER--YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS-- 92 (355)
T ss_dssp CGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGS--CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH--
T ss_pred ChhheEEccCCC--CCCC-CCHHHHHHHHHHHHHhcc--CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh--
Confidence 444689998875 6788 578899999988776543 344333567777777776 67889999999998887766
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...+ +.+++..+.|..+. ......+.++...++....+. ...+++++.+. .++++|++++.
T Consensus 93 -~~~~-~~~~v~~p~~~~~~-~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~~~~~---~~~~~v~l~nP 153 (355)
T d1lc5a_ 93 -GLKP-RRAMIVTPGFAEYG-RALAQSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFLCTP 153 (355)
T ss_dssp -HHCC-SEEEEEESCCTHHH-HHHHHTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEEESS
T ss_pred -hhcc-ccccccCCccceec-cccccccccceeeeeeccCCc-------------cceeeeeeccc---cccceeeeecc
Confidence 3444 44555667765533 333333443333222211111 11233444443 24556555555
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch---hhhhhhcC-CCCcEEEEEecHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi---~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+|++|.+.+. +.+++|.++|++|++++|+||+|..| ..+..... .....+++ .++||.++ +|+|+||++++.+
T Consensus 154 ~NPtG~~~~~-e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~ 231 (355)
T d1lc5a_ 154 NNPTGLLPER-PLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP-ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD 231 (355)
T ss_dssp CTTTCCCCCH-HHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG-GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH
T ss_pred cCcccccchh-hhhhhhhhhccccccccccccceeeeeeecccccc-cccccccceeecccccccccccccccceeccch
Confidence 7778887754 45999999999999999999999877 44332211 11222333 37999999 8999999999765
Q ss_pred -HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEE
Q 011856 331 -IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (476)
Q Consensus 331 -i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (476)
+.+.++. +..+++.+.+++.++.++|+.... .+.++++++..+++.+.|.+ .+.....++.|.++++.+
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p~~~~f~~~~~ 302 (355)
T d1lc5a_ 232 AAMARMRR-----QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LPLLTVYPGRANYLLLRC 302 (355)
T ss_dssp HHHHHHHH-----HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----STTEEECCCSSSEEEEEE
T ss_pred hhhHHHHh-----hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhh----cCCcEECCCCCEEEEEEC
Confidence 4454442 234567788888888887752211 23344455555555555544 333334456678888777
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
..+. .++++.|+++||+++++. .+.+|+++. +++|+++++++|++++
T Consensus 303 ~~~~---------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 303 ERED---------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp SCTT---------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CCCH---------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 4321 357788999999998753 235788764 8999999999998864
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.94 E-value=1.8e-25 Score=221.49 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=210.5
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
.+|||..|+.. +--...+.+.+++.+.++.. ..|+ +..++++.+++++.+.++ ++++|++|+|+++++.
T Consensus 30 ~~i~l~~G~P~-~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 30 DVISLAGGLPA-PETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SCEECCCCCCC-GGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CcEECCCCCCC-ccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 35777766421 11224557777777776542 1232 245777888888877654 5799999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC----CHH----HHHHHHh
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVS----ALENLFE 241 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~----~le~~l~ 241 (476)
.+++. ....++.|++.+++|..+...+ ...|.. .+.++.+ +.. ..+....
T Consensus 109 ~~~~~--l~~~gd~v~~~~P~y~~~~~~~-~~~g~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~ 166 (403)
T d1wsta1 109 LIGRV--FLNPGDPIVVEAPTYLAAIQAF-KYYDPE-------------------FISIPLDDKGMRVDLLEEKLEELRK 166 (403)
T ss_dssp HHHHH--HCCTTCEEEEEESCCHHHHHHH-HTTCCE-------------------EEEEEEETTEECHHHHHHHHHHHHH
T ss_pred HHHHH--HhhcCCccccCCCcchhhhHHH-hhcccc-------------------ceeEeecccCCccccccccchhhhh
Confidence 99984 2345678999999988754433 222321 2222221 222 2233333
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhc---cCCCCchhhhhhhc
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY---FGVTPDLTTLGKII 316 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~---~g~~pDi~t~sK~l 316 (476)
+......++++.+.+|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.... ... ++...-+.++||.+
T Consensus 167 ~~~~~~~~~~~~~p~NPtG~~~s~~~-l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 245 (403)
T d1wsta1 167 QGKRVKIVYTVSTFQNPAGVTMSVDR-RKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL 245 (403)
T ss_dssp TTCCCCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT
T ss_pred ccccccccccccccCCCCCccCCHHH-HHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee
Confidence 33334555555656666788776555 999999999999999999999887 5443221 111 12122233799999
Q ss_pred CCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 317 g~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
++|+|+||+++++++++.+.. .....+.+.+...+.+..+.++....+ .+.+.++++.+.+.+.|.+... .+
T Consensus 246 ~~G~RiG~~i~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~ 321 (403)
T d1wsta1 246 APGFRIGWVAAHPHLIRKMEI---AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP-EG 321 (403)
T ss_dssp CGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TT
T ss_pred cCcccccccccchHHHHHHHH---HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc-CC
Confidence 889999999999999887652 222233455566655555444322212 3334444444444555544321 12
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCC-CcHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HSSDDIQHT 463 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~-~t~e~i~~~ 463 (476)
+....+..|.++++.+.+.. ....+.+.|+++||++.|+. .+.+|+++. .++++++++
T Consensus 322 ~~~~~p~gg~~~~~~~~~~~-------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~a 388 (403)
T d1wsta1 322 VEWTKPEGGMFVRVTLPEGI-------------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREG 388 (403)
T ss_dssp CEECCCSBSSEEEEECCTTC-------------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHH
T ss_pred eEEeCCCceeEEEEECCCCC-------------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHH
Confidence 33334556778888875321 11356788999999998762 235788876 589999999
Q ss_pred HHHHHHHHHHhh
Q 011856 464 ITAAEKVKMRFL 475 (476)
Q Consensus 464 ~~~l~~~~~~~~ 475 (476)
+++|++++++.+
T Consensus 389 l~rl~~~l~~~~ 400 (403)
T d1wsta1 389 VRRLAETIKEEM 400 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.4e-25 Score=218.01 Aligned_cols=358 Identities=13% Similarity=0.079 Sum_probs=220.0
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~---~~~~~~~~la~~l~~~~~---~-~e~v~~~~sGseA~ 168 (476)
..+||+..| .+--..++.+.+++.+++.++. .|+ +..++++++++++.+.++ . .++|++|+|+++|+
T Consensus 25 ~dvI~l~~G---~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 25 HDVVNLGQG---FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp SCCEECCCC---SCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCCEECCCC---CCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence 346888887 3322247889999999887632 232 134677888888877654 2 25799999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
..+++. ...+++.|++.+++|+.+.. .+...+..+..... +............-.. -|.+++..... +.+
T Consensus 102 ~~~~~~--l~~~g~~vlv~~p~~~~y~~-~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~---~~~ 172 (418)
T d1w7la_ 102 FTAFQA--LVDEGDEVIIIEPFFDCYEP-MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQ---LDPMELAGKFT---SRT 172 (418)
T ss_dssp HHHHHH--HCCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEECC---CCSEEGGGEE---CCHHHHHHHCC---TTE
T ss_pred HHHHHh--hccCCceeeccccccchhHH-HHHHcCCEeeccccccccccccccccccCcc---cchhhhhcccc---ccc
Confidence 999984 23456778888888877543 33333432221111 1100000000000000 14444444333 356
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chh-hccCCCCch---hhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFGVTPDL---TTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~~g~~pDi---~t~sK~lg-~G~ 320 (476)
+++++...+|++|.+.+.++ +++|.++|++|++++|.||+|.+| ..+.. ... ...+..+.+ .++||.++ +|+
T Consensus 173 ~~i~~~~p~NPtG~~~s~~~-~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~ 251 (418)
T d1w7la_ 173 KALVLNTPNNPLGKVFSREE-LELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 251 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred cceeccCcCCcccccccHHH-HHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCC
Confidence 66666666667777766555 999999999999999999999888 44421 111 111222222 37999998 799
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+.+ .....+++.+.+++.++.+++.... + .++.++.++..+..++.|.+.+.+.++..
T Consensus 252 RvG~~v~~~~~~~~l~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 328 (418)
T d1w7la_ 252 KVGWVLGPDHIMKHLRT---VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKP 328 (418)
T ss_dssp CCEEEECCHHHHHHHHH---HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cccccccchhhhhhhcc---ccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcc
Confidence 99999999999887762 3344566778888888877775422 1 34545544444444444555445556655
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (476)
..+..|.++++.+.+............+.....++++.|+ ++||.+.|+. .+++|++++.++++++++
T Consensus 329 ~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a 408 (418)
T d1w7la_ 329 LIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAM 408 (418)
T ss_dssp EECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHH
T ss_pred cCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHH
Confidence 5566787888887431000000000011122356666655 5699998763 235889988899999999
Q ss_pred HHHHHHHHH
Q 011856 464 ITAAEKVKM 472 (476)
Q Consensus 464 ~~~l~~~~~ 472 (476)
+++|++...
T Consensus 409 ~~rl~~~~~ 417 (418)
T d1w7la_ 409 DEKLRKWKV 417 (418)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998753
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=5.8e-25 Score=216.79 Aligned_cols=332 Identities=15% Similarity=0.088 Sum_probs=206.8
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
.|+.+||+..| ++---.++.+.+++.+.......|+. ..++++++++++.+..+ .+++|++|+|+++++..
T Consensus 26 ~g~~vi~l~~G---~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~ 102 (389)
T d2gb3a1 26 RGVRIHHLNIG---QPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF 102 (389)
T ss_dssp TTCEEEECSSC---CCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred cCCCEEECCCC---CCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccc
Confidence 47778888777 33211477888888775443333432 24677888888887754 57899999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++. ....++.|++.+++|...... +...|......+....... .+.+.+... ..++++++
T Consensus 103 ~~~~--l~~~gd~V~i~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~ 163 (389)
T d2gb3a1 103 SFAV--IANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF-------------AIPQNLESF---INERTKGI 163 (389)
T ss_dssp HHHH--HCCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS-------------CCCTTGGGG---CCTTEEEE
T ss_pred cccc--cccCCCeEEEeCCCCcccccc-ccccCcccccccccccccc-------------chhhhhhhh---cccCccEE
Confidence 9984 234567888889888764433 3333332221111100000 011222222 23467776
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc---hhhhhhhcC-CCCcEEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAY 325 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD---i~t~sK~lg-~G~~iG~~ 325 (476)
++...+|++|.+.+ .+.+++|.++|++||++||.||+|..+ ..+........ .... +.++||.++ +|+|+||+
T Consensus 164 ~l~nP~NPtG~~~s-~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~-~~~~~~v~~s~sK~~~~~GlRiG~~ 241 (389)
T d2gb3a1 164 VLSNPCNPTGVVYG-KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI-ESDKVVVIDSVSKKFSACGARVGCL 241 (389)
T ss_dssp EEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS-CCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EeCCCCccccccch-HHHHHHHHhhcccCCEEEEEecccccccccccccccccc-ccccccccccccccccCcccceeee
Confidence 66655677787775 455999999999999999999999877 44432222111 1122 226889988 69999999
Q ss_pred EecHH-HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eeeeec
Q 011856 326 GGRRD-IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYIS 401 (476)
Q Consensus 326 ~~~~~-i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g 401 (476)
+++.+ +.+.+. ....+.++.+++.+.++.+.+...+. +...++++++.+.+.+.|++ ++... ..+..|
T Consensus 242 ~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~p~~g 313 (389)
T d2gb3a1 242 ITRNEELISHAM----KLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE----HGLKRFTKPSGA 313 (389)
T ss_dssp ECSCHHHHHHHH----HHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCBCCCSBS
T ss_pred eccchhHHHHHh----hhhhccccccccccccccccccccchhcccccccccccchhhhhhhhh----hccccccCCCce
Confidence 98665 444333 11233456667777776665532111 23344445555555555554 44332 234567
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC------CeEeccCC---------CcceEEeCCCcHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHTITA 466 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~~---------~~~~~~~~~~t~e~i~~~~~~ 466 (476)
.++++.+... + ..++++.|+++ ||.+.|+. .+.+|++++.+++++++++++
T Consensus 314 ~~~~~~lp~~-----------~---~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~ 379 (389)
T d2gb3a1 314 FYITAELPVE-----------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDV 379 (389)
T ss_dssp SEEEEECSSS-----------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHH
T ss_pred EEEEEeCCCC-----------C---HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHH
Confidence 7788877421 1 25677777654 67776652 235789988999999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|.+++++.
T Consensus 380 L~~~lk~f 387 (389)
T d2gb3a1 380 LMEGLKMF 387 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=8.8e-25 Score=210.43 Aligned_cols=335 Identities=16% Similarity=0.065 Sum_probs=206.2
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccC
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
+|||.+-..+. .+|++++|+.++.. +...+++.+...+|.+++++++ +.++++|++||++|++.|++.+ ...
T Consensus 1 ~~~~~~~~~t~----p~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~lA~~~-G~~~~~~~~sGt~A~~~al~a~--~~~ 72 (343)
T d1m6sa_ 1 MIDLRSDTVTK----PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--TQR 72 (343)
T ss_dssp CEECSCGGGCC----CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHH--CCT
T ss_pred CcccccccCCC----CCHHHHHHHHhhhc-CCcccCCCHHHHHHHHHHHHHH-CCCeEEEeCCHHHHHHHHHHHH--hcc
Confidence 36776653322 57999999876532 3333456788889999999998 6789999999999999999852 223
Q ss_pred CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCC
Q 011856 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVG 257 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~ 257 (476)
++.++.....++...................+.. .-..|++.+++.+... ...+..++++..++
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 139 (343)
T d1m6sa_ 73 GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-------------NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 139 (343)
T ss_dssp TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-------------TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred CCceeccccccceeeecccccccccceeeccccc-------------cCccCHHHHHHhhhhhhcccccccccccccccc
Confidence 4455554443322211111111111100000000 0112788888888642 23456666666665
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhh
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l 335 (476)
+.|....+.+.+++|+++|++||+++++|++++++ .....+.........+..+++|..+ +|.+.++.++..+.+...
T Consensus 140 ~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 219 (343)
T d1m6sa_ 140 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERA 219 (343)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred cCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhh
Confidence 65555556777999999999999999999999876 3332222222222334455666666 456788888888876655
Q ss_pred cCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcC
Q 011856 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (476)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (476)
.... ...+.+.... ...++.............+...++..++.+.+.++..... . .+....++.+.+....
T Consensus 220 ~~~~-~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~~~~~~~--- 290 (343)
T d1m6sa_ 220 RKAR-KMLGGGMRQA--GVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVN-P--EDVKTNMVILRTDNLK--- 290 (343)
T ss_dssp HHHH-HHHTCCCSST--HHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCC-G--GGCCSSEEEEECTTSS---
T ss_pred HhhC-cccccccchh--HHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCcc-C--CCCCceEEEEEeCCCc---
Confidence 4211 1122232322 3323332223333355666677777777777777632211 1 1123456666653321
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....++.+.|+++||++.+.+.+.+|+ +..+|+||||+++++|+++++++
T Consensus 291 ---------~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 ---------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ---------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 123578999999999999988888887 56789999999999999999986
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.92 E-value=2.1e-24 Score=214.36 Aligned_cols=345 Identities=11% Similarity=0.029 Sum_probs=207.5
Q ss_pred cCCCEEEecccChhhccCCC---CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---------CCCeE
Q 011856 96 IDGNEYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---------SIEMV 158 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~---~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---------~~e~v 158 (476)
..++.+|||..|.. .+.. ..+.+.+++.+.++....++| ..++++++++++.+.+. .+++|
T Consensus 27 ~~~~~vI~L~~G~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I 104 (412)
T d1bw0a_ 27 PSPKPIIKLSVGDP--TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 104 (412)
T ss_dssp CSCSCCEECCCCCT--TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CCCCCcEECcCCCC--CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeE
Confidence 34556788877631 1222 357788888888776433333 34677888888876531 46799
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++|+++|+..+++. ....++.|++.+++|+++. ..+...|..+...+.....+. ..+++.+++
T Consensus 105 ~it~G~~~al~~~~~~--l~~~Gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~~~~~~------------~~~~~~l~~ 169 (412)
T d1bw0a_ 105 VLCSGGSHGILMAITA--ICDAGDYALVPQPGFPHYE-TVCKAYGIGMHFYNCRPENDW------------EADLDEIRR 169 (412)
T ss_dssp EEESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHH-HHHHHTTCEEEEEEEEGGGTT------------EECHHHHHH
T ss_pred EEecccccchhhhhhh--hhccccceeeeeccchhhh-hhhhccCcccccccccccccc------------chhhHHHHh
Confidence 9999999999999984 2345678999999997754 444545554332211111110 016788887
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chh-hc---cCCCCchh--
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EY---FGVTPDLT-- 310 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~---~g~~pDi~-- 310 (476)
.+.. .++++++...+|++|.+.+ .+.+++|.++|++|+++||+||+|.+| ..+.. ... .. .......+
T Consensus 170 ~~~~---~~~~~~l~np~NPtG~~~~-~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T d1bw0a_ 170 LKDD---KTKLLIVTNPSNPCGSNFS-RKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVIL 245 (412)
T ss_dssp HCCT---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEE
T ss_pred hhhc---cccccccccccccccccch-hhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccc
Confidence 7653 5666666555666777765 455999999999999999999999888 54421 111 11 11111122
Q ss_pred -hhhhhcC-CCCcEEEEEecHH------HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 311 -TLGKIIG-GGLPVGAYGGRRD------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 311 -t~sK~lg-~G~~iG~~~~~~~------i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
++||.++ +|+|+||++++++ ++.... .. ...+.+.++..++++.+.+.. ..+++.+++++.....++
T Consensus 246 ~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 246 GGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLK---RV-GMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp EESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHH---HH-HHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred cccCccCccCCCCcccccccchhhcchhhhhhhc---cc-cccccCCchhhhhhccccccc-ccccccccccchhHHHHH
Confidence 5899999 7999999987643 222221 11 111223344444444433321 112233333333333333
Q ss_pred HHHHHhhhc-CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC----CcceEEeCCCc
Q 011856 383 GIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHS 456 (476)
Q Consensus 383 ~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~~~~~~~~~~t 456 (476)
.+.+...+. ++....+..|.++++.+...... +.....++++.|++ +||.+.|+. .+++|++++.+
T Consensus 321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~--------~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~ 392 (412)
T d1bw0a_ 321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR--------DIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRP 392 (412)
T ss_dssp HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS--------SCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSC
T ss_pred HHHHHHHHhcCceecCCCCceEEEEeCChhhcC--------CCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCC
Confidence 343333333 33333345566777777421111 11112467777765 599999863 35689999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|++++++.
T Consensus 393 ~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 393 VEVYREAVERIKAFCQRH 410 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.2e-23 Score=206.66 Aligned_cols=331 Identities=16% Similarity=0.113 Sum_probs=213.9
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-CC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-FG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~-~~---~~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
..||+..| ++---.++.+++++.+.+.++.. |+ +..++++.+++++.+.++ ..+ +|++|+|+++++..+
T Consensus 27 ~~i~l~~G---~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 103 (382)
T d1u08a_ 27 QAINLSQG---FPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 103 (382)
T ss_dssp TCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CCEEccCC---CCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHH
Confidence 34777777 33212578999999999887542 32 134778888888877654 344 599999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++. ....++.|++.++.|+.... .....|............. ..|++++++.+.+ ++++++
T Consensus 104 ~~~--l~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~~~~---~~~~i~ 164 (382)
T d1u08a_ 104 ITA--LVRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLSE---RTRLVI 164 (382)
T ss_dssp HHH--HCCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCCT---TEEEEE
T ss_pred Hhh--cccccceEEEecccccchhh-hhhhccccceecccccccc-------------cCCHHHHhhhhcc---CccEEE
Confidence 984 23456678888888887544 3333333222111111111 1178888887764 566666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-hc----cCCCCchhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EY----FGVTPDLTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~----~g~~pDi~t~sK~lg-~G~~iG~ 324 (476)
+.+.+|++|.+.+.++ +++|.++|++++++++.||+|..+ ..+..... .. .+...-+.++||.++ +|+|+||
T Consensus 165 l~~P~NPtG~v~~~~~-~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~ 243 (382)
T d1u08a_ 165 LNTPHNPSATVWQQAD-FAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 243 (382)
T ss_dssp EESSCTTTCCCCCHHH-HHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred ECCCCccccccccccc-chhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchh
Confidence 6555666777776555 999999999999999999999655 32211110 00 011111337999998 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
+++++++++.+.. .....+++.+.+.+.++.++++.- +++.+++++..+..++.|.+.....++....+..|.++
T Consensus 244 ~v~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~ 318 (382)
T d1u08a_ 244 CVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFL 318 (382)
T ss_dssp EECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEE
T ss_pred hhccchhHHHHHh---hhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEE
Confidence 9999999887752 333446678888999888888743 33344444444444444444444445544445567777
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
|+.+..... ....+|++.|+ ++||.+.|+. .+.+|+++..++|++++++++|++
T Consensus 319 ~~~~~~~~~-----------~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 319 LVDYSAVST-----------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp EEECTTTCC-----------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEecCCCCC-----------CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 777743111 01246777665 6799998862 124789988899999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.1e-24 Score=214.89 Aligned_cols=338 Identities=12% Similarity=0.139 Sum_probs=216.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGT 165 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~---~~~~~~~~la~~l~~~~~----~~e~v~~~~sGs 165 (476)
.+..+|||..|.. ++-=...+.+.+++.+.++.. ..|+ +..++++++++++.+..+ .+++|++|+|++
T Consensus 36 ~~~~~I~l~~G~P-d~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCC-CCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 4556899887742 111124566777777766542 1232 235677888888877643 578999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHh
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE 241 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~ 241 (476)
+|+..++.. ...+++.|++.+++|... .......|..+ ..+|. .|++.++..+.
T Consensus 115 ~al~~~~~~--~~~~Gd~Vlv~~P~y~~~-~~~~~~~g~~~-------------------~~~~~~~~~~~~~~l~~~~~ 172 (420)
T d1vp4a_ 115 QALDLIGKL--FLDDESYCVLDDPAYLGA-INAFRQYLANF-------------------VVVPLEDDGMDLNVLERKLS 172 (420)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCHHH-HHHHHTTTCEE-------------------EEEEEETTEECHHHHHHHHH
T ss_pred hhHHHHHHh--hhccccccccccccccch-hHHHHHHhhhc-------------------ccccccccccccchhhhhhh
Confidence 999999984 234567888888888764 33333333322 22221 15676665543
Q ss_pred c-----CCCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch----h
Q 011856 242 N-----NKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL----T 310 (476)
Q Consensus 242 ~-----~~~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi----~ 310 (476)
+ ...++ .++++.+.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+...........++. .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~-~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~ 251 (420)
T d1vp4a_ 173 EFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEK-RKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLN 251 (420)
T ss_dssp HHHHTTCGGGEEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEE
T ss_pred hhHHHhhccccceeeEecCCCCccchhhhhhh-hhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEe
Confidence 2 11233 44455555666787765544 999999999999999999999887 44432111111112232 2
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~ 386 (476)
+++|.++.|+|+||+++++++++.+.+ .....+.+.+.+.++++...++.... .+..+.++++.+.+.+.|++
T Consensus 252 s~sk~~~~G~RiG~~~~~~~~i~~l~~---~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 328 (420)
T d1vp4a_ 252 TFSKVLAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEE 328 (420)
T ss_dssp ESTTTTCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhh---hhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhh
Confidence 578887789999999999999988763 22223345567777666666653211 34556667777777777877
Q ss_pred HhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCC-Cc
Q 011856 387 AGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HS 456 (476)
Q Consensus 387 ~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~-~t 456 (476)
...+.+..... +..|.++++.+.+.. + ..++.+.|.++||.+.|+. .+.+|++++ .+
T Consensus 329 ~~~~~~g~~~~~p~gg~f~~~~~~~~~----------d---~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~ 395 (420)
T d1vp4a_ 329 YFSDIPGVKWVKSEGGLFIWLTLPEGF----------D---TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPP 395 (420)
T ss_dssp HSTTSTTCEECCCSBSSEEEEECCTTC----------C---TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSC
T ss_pred hhccCCCcEEecCCceEEEEEECCCCC----------C---HHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCC
Confidence 76554433333 345667778774321 0 1346678889999998762 235788875 58
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|++++++.
T Consensus 396 ~e~l~~a~~rL~~~l~~~ 413 (420)
T d1vp4a_ 396 DEKIVEGIKRLREVVLEY 413 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999999764
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.91 E-value=4.1e-23 Score=205.86 Aligned_cols=306 Identities=13% Similarity=0.069 Sum_probs=185.5
Q ss_pred CCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 137 PCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
..++++++++++.+.++ ++++|++++|+++++..+++. ....++.|++..++|.+.........|..+.....
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~--l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~ 162 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFC--LADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC 162 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHH--HCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHH--hCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeec
Confidence 45788899999887753 478999999999999999984 23345778888888777543332233443333222
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHh---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
....++. -|.++++..++ ....+++++++...+|++|.+.+.++ +++|.++|++||++||+||+
T Consensus 163 ~~~~~~~------------~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~-~~~i~~~a~~~~~~vI~De~ 229 (428)
T d1iaya_ 163 ESSNNFK------------ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDT-LKSVLSFTNQHNIHLVCDEI 229 (428)
T ss_dssp CTTTTTC------------CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHTTTCEEEEECT
T ss_pred ccccccc------------cccccccchhhhhhccCCCceEEEEccCCCcccccccccc-cchhheeeccCcEEEEeccc
Confidence 1111110 16777665543 23345666666555667787776555 99999999999999999999
Q ss_pred ccCc-cccccch--hhccC------CCCc----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 289 MTGF-RLAYGGA--QEYFG------VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 289 ~~g~-r~g~~~~--~~~~g------~~pD----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
|..+ ..+..+. .+..+ ..+| +.++||.++ +|+|+||+++ ++++.+.+.. ... ....+...
T Consensus 230 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~---~~~--~~~~~~~~ 304 (428)
T d1iaya_ 230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK---MSS--FGLVSTQT 304 (428)
T ss_dssp TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH---HHT--TSCCCHHH
T ss_pred ccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhh---hhc--cccccccc
Confidence 9877 4432211 11111 1122 227999998 7999999987 5566666542 111 11223344
Q ss_pred HHHHHHHHH---HhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 354 MTAGIHTLK---RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 354 ~aaa~aal~---~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
+.++.+.+. .+++ .+..++++++.+.+.+.|+. .++....+..|.++|+.+..... ........
T Consensus 305 ~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~----~gi~~~~p~gg~f~w~~l~~~~~-------~~~~~~~~ 373 (428)
T d1iaya_ 305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV----VGIKCLKNNAGLFCWMDLRPLLR-------ESTFDSEM 373 (428)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCBCCCSSSSEEEEECGGGCS-------SSSHHHHH
T ss_pred ccchhhhhhhhccccccccccccccchhHHHHHHHHHh----CCCEEecCCcceEEEEECccccc-------cCCCCCHH
Confidence 443333332 1111 22333344444455555543 44433334557788888753210 01222334
Q ss_pred HHHHHHHH-CCeEeccCC------CcceEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 429 RFYRGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 429 ~~~~~l~~-~Gv~~~~~~------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
++++.|++ +||++.|+. .+.+|++++ .+++++++++++|++++..
T Consensus 374 ~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 374 SLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 67777775 599998862 345789876 5778899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.91 E-value=3.6e-23 Score=206.47 Aligned_cols=312 Identities=12% Similarity=0.092 Sum_probs=187.7
Q ss_pred CCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 137 PCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-----~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
..++++++++++.+.++ ++++|++++|+++|+..+++. ...+++.|++.+++|++....+....|..+..+..
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~--l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~ 163 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFC--LADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHC 163 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHH--hcCCCCEEEEeCCCchhHHHHHHHhcCceeccccc
Confidence 34788888888887753 468999999999999999994 23456788888988877544332233332222111
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
....++ . -|.+++++.+++ ...++.++++...+|++|.+.+.++ +++|.++|++||++||+||+
T Consensus 164 ~~~~~~-----------~-l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~-l~~i~~~a~~~~~~vI~De~ 230 (431)
T d1m7ya_ 164 TSSNGF-----------Q-ITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNE-LYLLLSFVEDKGIHLISDEI 230 (431)
T ss_dssp CGGGTS-----------C-CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECT
T ss_pred cchhcc-----------c-ccHHHhhhhhhhhhhccCcceEEEecCccccccccccccc-cccccccccccCcceeeccc
Confidence 111111 0 167777777643 3345666666555667787766555 99999999999999999999
Q ss_pred ccCc-cccccch-h-hc---cCC--C----Cchh---hhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHH
Q 011856 289 MTGF-RLAYGGA-Q-EY---FGV--T----PDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (476)
Q Consensus 289 ~~g~-r~g~~~~-~-~~---~g~--~----pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~ 352 (476)
|..+ ..+..+. . +. ... . ..++ ++||.++ +|+|+||++++++++..... . .......++.
T Consensus 231 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~--~--~~~~~~~~~~ 306 (431)
T d1m7ya_ 231 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--K--MSSFGLVSSQ 306 (431)
T ss_dssp TGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH--H--HGGGSCCCHH
T ss_pred ccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH--H--Hhcccccccc
Confidence 9877 4432211 1 10 000 0 1122 6999999 79999999998876544331 1 1112233444
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHH
Q 011856 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (476)
Q Consensus 353 ~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (476)
.+.++.+.+..... +++.++.++..+.-++.+.+.+.+.++....+..|.++|+.+...-. ........+++
T Consensus 307 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~-------~~~~~~~~~l~ 379 (431)
T d1m7ya_ 307 TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMELW 379 (431)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHHH
T ss_pred ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccc-------cCcccCHHHHH
Confidence 44444444321111 22333333222222333333333445444334457778888753210 01122335677
Q ss_pred HHHH-HCCeEeccCC------CcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 432 RGML-EEGVYFAPSQ------FEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 432 ~~l~-~~Gv~~~~~~------~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
+.|+ ++||++.|+. .+++|++++. +++++++++++|++++++.
T Consensus 380 ~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 380 KKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp HHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 7776 5699998863 3457898764 6789999999999998863
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=7.8e-24 Score=204.11 Aligned_cols=308 Identities=12% Similarity=0.080 Sum_probs=196.9
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC----LLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~----~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
..+++++++..|- |+++ .++.+.+++.+.+......+++. ++++++++++....-..|+|++++|+++++..+
T Consensus 16 ~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l 92 (334)
T d2f8ja1 16 TEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (334)
T ss_dssp CCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHH
T ss_pred ccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHH
Confidence 4567778877664 6666 57899999998887643223343 344455554433322678999999999999888
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++ . .++|++.+++|.++. ......|..+...+....... + +...+++++++
T Consensus 93 ~~---~---~d~v~i~~P~y~~~~-~~~~~~g~~~v~v~~~~~~~~--------------~--------~~~~~~~~~l~ 143 (334)
T d2f8ja1 93 ML---M---FDRSVFFPPTYSCYR-IFAKAVGAKFLEVPLTKDLRI--------------P--------EVNVGEGDVVF 143 (334)
T ss_dssp HH---H---SSEEEECSSCCHHHH-HHHHHHTCCEEECCCCTTSCC--------------C--------CCCCCTTEEEE
T ss_pred hh---h---ccccccccccccccc-cchhccCCccccccccccccc--------------c--------ccccccceEEE
Confidence 76 2 268999999987754 344444544433222111000 0 00112344554
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc---hhhhhhhcC-CCCcEEEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD---i~t~sK~lg-~G~~iG~~~ 326 (476)
+...+|++|.+.+ .+.|.++ .++++++|+||+|.++ ........ ...+. +.++||.++ +|+|+||++
T Consensus 144 l~nP~NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~~~~G~R~G~~~ 215 (334)
T d2f8ja1 144 IPNPNNPTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGESYVDFL---KKYENLAVIRTFSKAFSLAAQRVGYVV 215 (334)
T ss_dssp EESSCTTTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGG---GTCSSEEEEEESTTTSSCTTTCEEEEE
T ss_pred ecccccccceeec----HHHhhcc-ccceeEEeecccchhhccccccccc---ccCceEEEEecCccccchhhhhhhhcc
Confidence 4444566777777 4445554 4689999999999766 22221111 11222 237999999 899999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEE
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (476)
+++++++.+... ..+++.+..++.++.+.++..+. ++..++++++.+++.+.|+++ ++. ..++.|.|++
T Consensus 216 ~~~~~i~~l~~~-----~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~-~~~~~g~f~~ 285 (334)
T d2f8ja1 216 ASEKFIDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITDSRGNFVF 285 (334)
T ss_dssp ECHHHHHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCE-ECCCCSSEEE
T ss_pred cchHHHHHHHHh-----hcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC----CCe-ECCCCceEEE
Confidence 999999988631 23456678888888777764322 344556666666666666654 322 2355677777
Q ss_pred EEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHH
Q 011856 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
+.+.. ....++.+.|+++||++++. .+++|+++. +++|+++++++|++
T Consensus 286 ~~~~~--------------~~~~~~~~~L~~~GI~vr~~-~~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 286 VFMEK--------------EEKERLLEHLRTKNVAVRSF-REGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp EECCH--------------HHHHHHHHHHHHTTEECEEE-TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred EECCC--------------CCHHHHHHHHHHCCCEECCC-CCeEEEEcC-CHHHHHHHHHHHhc
Confidence 66532 23467889999999999765 467899875 77888999998875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=2.4e-23 Score=200.08 Aligned_cols=327 Identities=13% Similarity=0.008 Sum_probs=188.0
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
.+|||.+. |+.| .||+|++|+.++.......+++++...+++++++++++....++|++|||+||+.+++. ..
T Consensus 3 ~~~~f~s~---n~~g-~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~---~~ 75 (345)
T d1v72a1 3 PALGFSSD---NIAG-ASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA---MT 75 (345)
T ss_dssp CCCBCSCG---GGCC-CCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT---SC
T ss_pred CCcCcCCC---CCCC-CCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHH---HH
Confidence 36888876 6666 69999999988654432233578889999999999995445789999999999999994 33
Q ss_pred CCceEEEEeCCCCCCc---hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---CCeEEEEEc
Q 011856 180 GRERIIKFEGCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILE 253 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~e 253 (476)
.....+......|... .......+..+.... +. .....+++.+++.+.... .....++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (345)
T d1v72a1 76 PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV-DG-------------PAAKLDIVRLRERTREKVGDVHTTQPACVS 141 (345)
T ss_dssp CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC-CC-------------GGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred hcCCccccccccceeeechhhHHHhcCccccccc-cc-------------ccccccHHHhhhhhcccccccccccceeee
Confidence 3333333333333221 111112222111100 00 001237899999887531 234555666
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC--CCchhhhhhhcCCCCcEEEE-EecH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPDLTTLGKIIGGGLPVGAY-GGRR 329 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pDi~t~sK~lg~G~~iG~~-~~~~ 329 (476)
.++++.+....+.+.++++.++|++||+++++|++|+++ ............. ..+..+++|..+++...+.. ....
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (345)
T d1v72a1 142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNT 221 (345)
T ss_dssp EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSG
T ss_pred eeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchh
Confidence 666555555566677999999999999999999999866 4433332232222 23445667766655444444 3333
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeeceeEEEEE
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFF 408 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~ 408 (476)
......... .....++ .++ ...++.+++..+. +....+.......+.+.+.+...+.+..... +..+.++++.+
T Consensus 222 ~~~~~~~~~-~~~~~~~--~~~-~~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~ 296 (345)
T d1v72a1 222 SLATEMSYR-RKRAGHL--SSK-MRFLSAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 296 (345)
T ss_dssp GGHHHHHHH-HHHTTCC--CSS-THHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE
T ss_pred hhhhhcccc-ccccccc--cch-hhHHhhhhHHHHH-HhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEc
Confidence 333222210 1111112 222 2233333333333 3333334444444444444444444433222 23345555544
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC--CCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
. .++.+.|+++|+.+... +...+|+ +..+|+||||+++++|+++
T Consensus 297 ~------------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 297 D------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp C------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred C------------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 35678899999987654 3345666 5778999999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-22 Score=197.59 Aligned_cols=282 Identities=13% Similarity=0.127 Sum_probs=182.5
Q ss_pred CCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCC-c-eEEEEeCCCCCCchhHHhhcCCCCccCCC
Q 011856 135 GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-E-RIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (476)
Q Consensus 135 ~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~-~-~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (476)
.||+....+|.++++++++ ++|+|++++|+++++..+++ .+.++ + .|++.+++|.. +.......|..+...+.
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~---~~~~pgd~~Vl~~~P~y~~-~~~~~~~~g~~v~~~~~ 127 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIR---AFCEPGKDAILYCPPTYGM-YSVSAETIGVECRTVPT 127 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH---HHCCTTTCEEEECSSSCTH-HHHHHHHHTCEEEECCC
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHH---Hhhcccccccccccccccc-chhhhhccCceeecccc
Confidence 3565555678888888876 68999999999999999999 45443 4 35555666654 44445555554433222
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
.....+ |+++++..+. ++++|++.+.+|++|.+.+..+ ++.+.+.++ ++.++|+||+|..
T Consensus 128 ~~~~~~--------------d~~~l~~~~~----~~~~v~~~~pnNPtG~~~~~~~-~~~~~~~~~-~~~~~iidd~~~~ 187 (354)
T d1fg7a_ 128 LDNWQL--------------DLQGISDKLD----GVKVVYVCSPNNPTGQLINPQD-FRTLLELTR-GKAIVVADEAYIE 187 (354)
T ss_dssp CTTSCC--------------CHHHHHTSCT----TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHT-TTCEEEEECTTGG
T ss_pred cccccc--------------chhhhhhccc----ccceeeccCCCccceeEeeecc-ccccccccc-ccccccccccchh
Confidence 111111 7777776543 6778888877778888776444 777777765 6778888988877
Q ss_pred c-cccccchhhccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC
Q 011856 292 F-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (476)
| ..... .......++++ ||||.++ +|+|+||+++++++++.+.+ ....++.+.+++.++.+++..-..
T Consensus 188 f~~~~~~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~-----~~~~~~~~~~~~~~a~~~~~~~~~ 260 (354)
T d1fg7a_ 188 FCPQASL--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMK-----VIAPYPLSTPVADIAAQALSPQGI 260 (354)
T ss_dssp GSGGGCS--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHH-----HSCSSCSCHHHHHHHHHHTSHHHH
T ss_pred hcccccc--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhh-----hcCccchhhHHHHHHHHHHhhhcc
Confidence 7 33221 11222233433 7999999 89999999999999988863 123445566666555555421111
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHhhhcCCceE-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec
Q 011856 367 ---PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (476)
Q Consensus 367 ---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 442 (476)
....+++.+..+++.+.|.+ .+.... .++.|+|+++.+.+ ..++++.|+++||+++
T Consensus 261 ~~~~~~~~~~~~~r~~l~~~l~~----~~~~~~~~p~~~~f~~~~~~~----------------~~~~~~~L~~~gIlvr 320 (354)
T d1fg7a_ 261 VAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFKA----------------SSAVFKSLWDQGIILR 320 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEETT----------------HHHHHHHHHHTTEECE
T ss_pred ccccccchhhhhHHHHHHHHHHh----CCCcceeCCCCceEEEEeCCC----------------HHHHHHHHHHCCcEEe
Confidence 22233444555555555554 343322 34567788877632 2568889999999998
Q ss_pred cCC-----CcceEEeCCCcHHHHHHHHHHHH
Q 011856 443 PSQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (476)
Q Consensus 443 ~~~-----~~~~~~~~~~t~e~i~~~~~~l~ 468 (476)
++. .+++|+++. |++|+++++++|+
T Consensus 321 ~~~~~~~~~~~lRisig-t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 321 DQNKQPSLSGCLRITVG-TREESQRVIDALR 350 (354)
T ss_dssp ECTTSTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEEEEeC-CHHHHHHHHHHHh
Confidence 753 245788764 7889999999887
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.88 E-value=3.5e-22 Score=201.31 Aligned_cols=355 Identities=15% Similarity=0.049 Sum_probs=203.9
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
.++.+|||.+.+++..+++ ... ..+..+...+..++...+|++++++++ +.++++|++||++|++.|+++++
T Consensus 40 ~~~~~id~~sd~~t~~~~~---~~~----a~~~~gd~~y~~~~~~~~le~~~a~l~-g~~~~~~~~sGt~A~~~a~~~~~ 111 (465)
T d1ax4a_ 40 SSAVYIDLLTDSGTNAMSD---HQW----AAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 111 (465)
T ss_dssp GGGCSEECSCSSSCCCEEH---HHH----HHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCeeeecccccchhhhhH---HHH----HHHhhhhhhhccChHHHHHHHHHHHHH-CCCEEEECCCcHHHHHHHHHHHH
Confidence 3777899998866544432 222 223444434445676778888888888 78999999999999999999886
Q ss_pred hcc-----CCceEEEEeCCCCCCchhHH-hhcCCCCccCCCCCCCCCCCCCCCceeecc-CCCHHHHHHHHhcC-CCCeE
Q 011856 177 AFT-----GRERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENN-KGEIA 248 (476)
Q Consensus 177 ~~~-----~~~~ii~~~~~yhg~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~-~~~~a 248 (476)
.+. .+..++. +.+|+.+.... ...|..+.....+...... ...... ..|+++|++++++. ++.++
T Consensus 112 ~~g~~~~~~~~~~i~--~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~i~~~~~~~~~ 184 (465)
T d1ax4a_ 112 KYKQKEGKAKNPVFI--SNFHFDTTAAHVELNGCKAINIVTEKAFDSE-----TYDDWKGDFDIKKLKENIAQHGADNIV 184 (465)
T ss_dssp HHHHHTTCCSSCEEE--ESSCCHHHHHHHHHTTCEEEECBCGGGGCTT-----SCCTTTTCBCHHHHHHHHHHHCGGGEE
T ss_pred HHHHhcCCCCCeEEe--ccchhhhhHHHHHHcCCeeecccccccCCCC-----CCCCccCccCHHHHHHHHHhhcccccc
Confidence 542 2233333 35666554443 3334322211000000000 000001 12899999999764 34578
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC------c-cccccchhhccCCCC------chhhhhhh
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG------F-RLAYGGAQEYFGVTP------DLTTLGKI 315 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g------~-r~g~~~~~~~~g~~p------Di~t~sK~ 315 (476)
++++++.++.+|..+++.++|++|+++|++||++||+||+|+. . +.+.++..+..++.+ |++++||.
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~ 264 (465)
T d1ax4a_ 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 264 (465)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETT
T ss_pred ceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecc
Confidence 8899999999888888999999999999999999999999952 2 333333333333333 45677777
Q ss_pred cCC-CCcEEEEEecHH--HHHhhcCC-CCccccCCCCCcHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 316 IGG-GLPVGAYGGRRD--IMEMVAPA-GPMYQAGTLSGNPL-AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 316 lg~-G~~iG~~~~~~~--i~~~l~~~-~~~~~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
.++ |+..|+++++++ +.+..... .......++++... +++++...+.....+++.++..++.++|.+.|++...
T Consensus 265 k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~- 343 (465)
T d1ax4a_ 265 KDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI- 343 (465)
T ss_dssp STTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 774 456777777643 22222100 01122333333333 3333333333333356777778888999999988642
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------CcceEEe-
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------FEAGFTS- 452 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------~~~~~~~- 452 (476)
+.+....+.+.+........... .............+.+.||.....+ ...++++
T Consensus 344 -~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlal 416 (465)
T d1ax4a_ 344 -PIQYPTGGHAVFVDCKKLVPQIP------GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTI 416 (465)
T ss_dssp -CBCSSCCSSEEEEESTTTCTTSC------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred -ccccCCCcceeeeehhhhcCCCc------cccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeC
Confidence 22222222222211111000000 0011122334455667788653321 1235553
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 --LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 --~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|+||+|.++++|++++++.
T Consensus 417 P~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 417 ARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999988653
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.88 E-value=2.4e-22 Score=198.63 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=198.6
Q ss_pred EecccChhhccCCC--CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeC--CHHHHHH
Q 011856 102 IDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVN--SGTEACM 169 (476)
Q Consensus 102 iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~--sGseA~~ 169 (476)
||+..|...+.-|. ..+.|++|..+.+++....+| ..++++++++++.+... ..+.++.+. +|+.+..
T Consensus 31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~ 110 (401)
T d7aata_ 31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR 110 (401)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence 55555532233443 358899998887776543222 35677788888776654 355665543 3444444
Q ss_pred HHHHHHHhc-cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 170 GVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 170 ~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
+...+++.+ ..++.|++.+++|+++. ..+...|..+...++....+. ..+++.+++.+....++++
T Consensus 111 ~~~~~~~~l~~pGd~Vlv~~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 177 (401)
T d7aata_ 111 VGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTC------------SLDFTGAMEDISKIPEKSI 177 (401)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTT------------EECHHHHHHHHTTSCTTCE
T ss_pred HHHHhhHhhcCCCceEEEecCCCcchh-hHHHHcCCeEEEEeccccccc------------cccHHHHHHHHhcCCCceE
Confidence 444434454 45678999999998854 444455554433222111111 1168888888865555778
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc----hhhccCCCCch---hhhhhhcC-CC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDL---TTLGKIIG-GG 319 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~~~g~~pDi---~t~sK~lg-~G 319 (476)
++++.+.+|++|.+.+.++ +++|.++|++|++++|.||+|.++ ..+... ........+++ .++||.++ .|
T Consensus 178 ~iii~~p~NPTG~~~s~e~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 256 (401)
T d7aata_ 178 ILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG 256 (401)
T ss_dssp EEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG
T ss_pred EEEecCCCCCccccCCHHH-HHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeec
Confidence 8888888888888876555 999999999999999999999988 443211 11111222332 36899999 79
Q ss_pred CcEEEEEecHHHHHhhcCCCC----ccccCCCCCcHHHHHHHHHHHHH------hcC--CCHHHHHHHHHHHHHHHHHHH
Q 011856 320 LPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~----~~~~~t~~~~~~~~aaa~aal~~------~~~--~~~~~~~~~~~~~l~~~L~~~ 387 (476)
+|+||++++.++++....... .......+.+.+.++++...++. ..+ +..+++++++++.+.+.|++.
T Consensus 257 ~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 336 (401)
T d7aata_ 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE 336 (401)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988776654431000 00111223455555555544431 000 234444555556666666654
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCCCcceEEeCC-CcHHHHHHHHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQHTIT 465 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~ 465 (476)
+....+....+..|.|+++.+. .++++.| .++||++.|+ .|++++ .++++|+.+.+
T Consensus 337 ~~~~~~~~~~~~~G~F~~~~ls------------------~e~~~~L~~e~gV~~~pg----~Ris~a~~~~~~i~~la~ 394 (401)
T d7aata_ 337 GSSHNWQHITDQIGMFCFTGLK------------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNVGYLAH 394 (401)
T ss_dssp TCCSCCHHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHH
T ss_pred CCCCCcceECCCCeEEEecCCC------------------HHHHHHHHHhCCEEECCC----cEEEeccCCHHHHHHHHH
Confidence 3222222122345555554331 2345555 5679999886 488764 68889999988
Q ss_pred HHHHHH
Q 011856 466 AAEKVK 471 (476)
Q Consensus 466 ~l~~~~ 471 (476)
+|.+++
T Consensus 395 ai~~v~ 400 (401)
T d7aata_ 395 AIHQVT 400 (401)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.88 E-value=6.8e-22 Score=195.99 Aligned_cols=322 Identities=10% Similarity=-0.009 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHHHhc--CCCCC----CCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHHHHHHHHHHHHh-----ccC
Q 011856 117 DDQVLAALGETMKKG--TSFGA----PCLLENVLAEMVISAVP---SIE--MVRFVNSGTEACMGVLRLARA-----FTG 180 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~--~~~~~----~~~~~~~la~~l~~~~~---~~e--~v~~~~sGseA~~~al~~ar~-----~~~ 180 (476)
.|.|.+|........ .+.+. ..++++++++++.+... ..+ .+..+.+++.++..+...... ..+
T Consensus 50 ~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 129 (412)
T d1ajsa_ 50 LPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNK 129 (412)
T ss_dssp CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred cHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCC
Confidence 477888766544432 22122 34666666666655442 233 355677888888877764322 246
Q ss_pred CceEEEEeCCCCCCchhHHhhcCCCCc-cCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 181 RERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++.|++.+++|..+ ...+...|.... ........+. ..|++.+++.+....+.+.++++++.+|++
T Consensus 130 Gd~Vlv~~P~y~~y-~~~~~~~G~~~v~~~~~~~~~~~------------~~d~~~~~~~~~~~~~~~~~il~~~P~NPT 196 (412)
T d1ajsa_ 130 DTPVYVSSPTWENH-NGVFTTAGFKDIRSYRYWDTEKR------------GLDLQGFLSDLENAPEFSIFVLHACAHNPT 196 (412)
T ss_dssp CSCEEEEESCCTHH-HHHHHHTTCSCEEEEECEETTTT------------EECHHHHHHHHHHSCTTCEEEEESSSCTTT
T ss_pred CCEEEEeCCcchhh-HHHHHHcCCeEEEeecccccccc------------cccHHHHHHHHHhccCCcEEEEecCCCCCc
Confidence 78899999999764 444444444321 1111111110 016788877776555577788887777888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc---chh-hccCCCCc---hhhhhhhcC-CCCcEEEEEecHH
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQ-EYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~---~~~-~~~g~~pD---i~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
|.+.+.++ +++|.++|++||+++|+||+|.++ +.+.. ... ......+. +.++||.++ .|+|+||+++..+
T Consensus 197 G~v~s~e~-~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~ 275 (412)
T d1ajsa_ 197 GTDPTPEQ-WKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK 275 (412)
T ss_dssp CCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred CCCCCHHH-HHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchh
Confidence 88876555 999999999999999999999988 54321 111 11111122 236899999 6999999988765
Q ss_pred HHHhhcCCC----CccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 331 IMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 331 i~~~l~~~~----~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
..+.+.... ........+.+.+++.++.+.+... .+ +...++++++++.+.+.|++......+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~ 355 (412)
T d1ajsa_ 276 EPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD 355 (412)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecC
Confidence 443332100 0111222344556665555544311 11 23344555555556666655432111111122
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
..|.|.++.+. .++++.| .++||++.|++ |++++ .++++++.++++|+++++++
T Consensus 356 ~~G~F~~~~ls------------------~~~v~~L~~e~gV~~vpg~----Ri~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 356 QIGMFSFTGLN------------------PKQVEYLINQKHIYLLPSG----RINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CCSSEEECCCC------------------HHHHHHHHHTTCEECCTTS----EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCC------------------HHHHHHHHHhCCEEEeCCC----eEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 34444332221 1333444 57799998874 88764 68999999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.3e-21 Score=193.07 Aligned_cols=341 Identities=15% Similarity=0.059 Sum_probs=197.8
Q ss_pred EEcCCCEEEecccChhhccCCC--CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC--eEEEe
Q 011856 94 WDIDGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE--MVRFV 161 (476)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e--~v~~~ 161 (476)
.|.+.++ ||+..|...+.-|. ..|.|++|..+.+++...++| ..++++++++++.+... ..+ .+..+
T Consensus 22 ~d~~~~k-InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T d2q7wa1 22 ADERPGK-INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp ------C-EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred ccCCCCc-EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeecc
Confidence 3444433 78887754455565 358999998888877543333 34677777777776654 123 33456
Q ss_pred CCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh
Q 011856 162 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (476)
Q Consensus 162 ~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 241 (476)
.+|+.+...++.+......++.|++.+++|..+...+ ...|..+...+.....+. ..+...+++...
T Consensus 101 ~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~-~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 167 (396)
T d2q7wa1 101 PGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF-NSAGLEVREYAYYDAENH------------TLDFDALINSLN 167 (396)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH-HHTTCEEEEEECEETTTT------------EECHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhhcccceEEEEecCCCccchHHH-HHcCCeeEeccccccccc------------ccccchHHHHHH
Confidence 6777676666654334567788999999988754444 344443222111111110 015677777666
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhh-ccCCCCc---hhhhhh
Q 011856 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQE-YFGVTPD---LTTLGK 314 (476)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~-~~g~~pD---i~t~sK 314 (476)
+..+++.++++.+.+|++|.+.+.+ .+++|.++|++|++++|+||+|.+| ..+... ... ..+..++ +.++||
T Consensus 168 ~~~~~~~~i~~~~P~NPTG~~~s~e-~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 246 (396)
T d2q7wa1 168 EAQAGDVVLFHGCCHNPTGIDPTLE-QWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSK 246 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTT
T ss_pred HhccCcEEEEecCCcCCcCeecCHH-HHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccc
Confidence 5555677777777777788877644 4999999999999999999999988 433211 111 1111222 236899
Q ss_pred hcC-CCCcEEEEEecHHHHHhhcCCCC---ccccCCC-CCcHHHHHHHHHHHHH------hcC--CCHHHHHHHHHHHHH
Q 011856 315 IIG-GGLPVGAYGGRRDIMEMVAPAGP---MYQAGTL-SGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELT 381 (476)
Q Consensus 315 ~lg-~G~~iG~~~~~~~i~~~l~~~~~---~~~~~t~-~~~~~~~aaa~aal~~------~~~--~~~~~~~~~~~~~l~ 381 (476)
.++ .|+|+||++++.+.++.+..... ....+++ +.+...+.++.+.+.. .++ +...++++++++.+.
T Consensus 247 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 326 (396)
T d2q7wa1 247 NFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 69999999988766554431000 0111223 3344444444433321 111 334455666666666
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeCC-CcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~~-~t~e~ 459 (476)
+.|++++....+.......|.|.++.+. .++++.|+ ++||++.+++ |++++ .++++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~G~F~~~~l~------------------~e~~~~L~~e~gV~~~~g~----Ri~~a~l~~~~ 384 (396)
T d2q7wa1 327 NTLQEKGANRDFSFIIKQNGMFSFSGLT------------------KEQVLRLREEFGVYAVASG----RVNVAGMTPDN 384 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTT
T ss_pred HHHHHhCCCCCcceecCCCeEEEeeCCC------------------HHHHHHHHHhCCEEECCCC----EEEecCCCHHH
Confidence 6666653221111112345655554331 23455555 6799998875 77764 58889
Q ss_pred HHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVK 471 (476)
Q Consensus 460 i~~~~~~l~~~~ 471 (476)
|+.++++|++++
T Consensus 385 i~~~~~ai~~v~ 396 (396)
T d2q7wa1 385 MAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999888763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.86 E-value=1.5e-20 Score=186.07 Aligned_cols=335 Identities=14% Similarity=0.064 Sum_probs=195.1
Q ss_pred EecccChhhccCCCC--cHHHHHHHHHHHHh-cCCCCC-----CCHHHHHHHHHHHhhCC---CCCeE--EEeCCHHHHH
Q 011856 102 IDYVGSWGPAIIGHA--DDQVLAALGETMKK-GTSFGA-----PCLLENVLAEMVISAVP---SIEMV--RFVNSGTEAC 168 (476)
Q Consensus 102 iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~-~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v--~~~~sGseA~ 168 (476)
||+..|...+.-|.. .|.|++|....... ...++| ..++++++++++.+... ..+.+ ..+.+|..+.
T Consensus 32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1yaaa_ 32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL 111 (412)
T ss_dssp EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence 566655333455543 47788875444332 222222 24666677777665553 12333 2234555555
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
..++.+.....+++.|++.+++|..+...+ ...|..+...++....+. ..+.+.+++.+...++...
T Consensus 112 ~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~-~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 178 (412)
T d1yaaa_ 112 HISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKAPEGSI 178 (412)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHhccCCCCEEecccccCchhHHHH-HHcCCceecccccccccc------------cccchhhhcccccCCCceE
Confidence 555543333456788999999887754443 333433222111111110 0167888887776555677
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-h------hhccCCCCchh---hhhhhcC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A------QEYFGVTPDLT---TLGKIIG 317 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~------~~~~g~~pDi~---t~sK~lg 317 (476)
++++++.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+... . ....+..+.++ ++||.++
T Consensus 179 ~i~i~~P~NPTG~~~s~~~-~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 257 (412)
T d1yaaa_ 179 FVLHSCAHNPTGLDPTSEQ-WVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEECSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEecCCCCCccccCCHHH-HHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc
Confidence 7888777888888776555 999999999999999999999988 443211 0 11122333333 6999999
Q ss_pred -CCCcEEEEEecHHHHHhhcCC--------CCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGGRRDIMEMVAPA--------GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGEL 380 (476)
Q Consensus 318 -~G~~iG~~~~~~~i~~~l~~~--------~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l 380 (476)
.|+|+||++++.++++.+... .........+.+.+++.++...++.- .+ +.+.++++++++.+
T Consensus 258 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 337 (412)
T d1yaaa_ 258 MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHAL 337 (412)
T ss_dssp CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999998876543221100 00112334456677777766665421 11 34445566666666
Q ss_pred HHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCCCcceEEeCC-CcH
Q 011856 381 TQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSS 457 (476)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~~~~~-~t~ 457 (476)
.+.|++.+....+. .+.. .|.|.++.+. .++++.| .++||++.++ .|++++ .++
T Consensus 338 ~~~L~~~g~~~~~~-~~~~~gG~F~~~~ls------------------~e~~~~L~~e~~V~~~~g----~Ris~~g~~~ 394 (412)
T d1yaaa_ 338 RDHLVKLGTPGNWD-HIVNQCGMFSFTGLT------------------PQMVKRLEETHAVYLVAS----GRASIAGLNQ 394 (412)
T ss_dssp HHHHHHHTCSSCCT-HHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTT----SEEEGGGCCT
T ss_pred HHHHHHhCCCCCCc-eeCCCceEEEecCcC------------------HHHHHHHHHhCCEEECCC----CEEEeccCCH
Confidence 66666653221111 1233 4444333221 2345555 4679998886 478764 688
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVKMR 473 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~ 473 (476)
+.|+.+.++|+++++.
T Consensus 395 ~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 395 GNVEYVAKAIDEVVRF 410 (412)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999999998864
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.3e-21 Score=197.13 Aligned_cols=355 Identities=13% Similarity=0.031 Sum_probs=206.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
++.+||+.+.+++... .+++...+..+...+.-++...+|.+++++++ +.+.+++++||++|++.|+++.+.
T Consensus 40 ~~~~idl~sd~~t~~~-------~~~~~a~~~~gd~~Y~~~~~~~~le~~~a~l~-G~~~~~~~~sGt~A~~~a~~~~~~ 111 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGAV-------TQSMQAAMMRGDEAFSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCTTCSCC-------CHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHT-CCSEEEEECSSTTTHHHHHHHHHH
T ss_pred cceeeeccccccchhh-------HHHHHhhccccchhhcCCchHHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHhh
Confidence 4457787776544322 12222233333333334677788999999999 788999999999999999997654
Q ss_pred c------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC-CCCeEEE
Q 011856 178 F------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAI 250 (476)
Q Consensus 178 ~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~a~v 250 (476)
. .++...+...+.||+.+.......|..+.....+..... ..........|+++|++.++++ ++.++++
T Consensus 112 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i 187 (467)
T d2v1pa1 112 KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDT----GVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCT----TSCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred ccceEecCCCCcEEEEecccccccHHHHHHcCCeeeeccccccccc----ccccccccCCCHHHHHHHHhhcCcccccee
Confidence 3 455667778888998887777777765433222111110 0001112234899999999753 3467899
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc---cccccchhhcc---------CCCCchhhhhhhcC
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF---RLAYGGAQEYF---------GVTPDLTTLGKIIG 317 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~---r~g~~~~~~~~---------g~~pDi~t~sK~lg 317 (476)
++|++++++|..+++.+++++|+++|++||++||+|+++. |. +.+..+..... +...|++++|+..+
T Consensus 188 ~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~ 267 (467)
T d2v1pa1 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred eecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCC
Confidence 9999999988888888999999999999999999999984 21 11111111111 12356666665444
Q ss_pred CCCc-EEEEEecHHH-HHhhc---CCC-CccccCCCCCcHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 318 GGLP-VGAYGGRRDI-MEMVA---PAG-PMYQAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 318 ~G~~-iG~~~~~~~i-~~~l~---~~~-~~~~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
.+.+ .|+++.+++. ..... ... ...++.++++......++. ..+.....+++.++..++.++|.++|.+...
T Consensus 268 ~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~- 346 (467)
T d2v1pa1 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV- 346 (467)
T ss_dssp TCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 3334 4455555442 22221 000 1112334444444444443 4444444477888888999999999987532
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-----------------CCcceEEe-
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-----------------QFEAGFTS- 452 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------~~~~~~~~- 452 (476)
.+....+.+.+........... ..+..........+.+.||..... ....+|++
T Consensus 347 --~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlai 418 (467)
T d2v1pa1 347 --VCQQAGGHAAFVDAGKLLPHIP------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTI 418 (467)
T ss_dssp --CEEEECSSCEEEEHHHHSTTSC------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECC
T ss_pred --cccCCCccceeecchhhcCCcc------hhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEec
Confidence 1111222221111110000000 001111123344456777743211 12235653
Q ss_pred --CCCcHHHHHHHHHHHHHHHHH
Q 011856 453 --LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 453 --~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..+|+||||.++++|+++++.
T Consensus 419 p~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 419 PRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 356999999999999999864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=6.4e-19 Score=171.16 Aligned_cols=326 Identities=15% Similarity=0.176 Sum_probs=185.2
Q ss_pred CCCcHHHHHHHHHHHHhcC--CC---C-----CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCC-c
Q 011856 114 GHADDQVLAALGETMKKGT--SF---G-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR-E 182 (476)
Q Consensus 114 G~~~p~v~~a~~~~l~~~~--~~---~-----~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~-~ 182 (476)
|.-+|+.++|+.+..+... .+ + ...++...+.+.+++++ +.|.+++++||++|+..+++ ++.++ +
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~-g~e~~~~t~g~t~a~~~~~~---al~~~gd 87 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GCDVARVTNGAREAKFAVMH---SLAKKDA 87 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT-TSSEEEEESSHHHHHHHHHH---HHCCTTC
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh-CcCEEEEECcHHHHHHHHHH---HHhCCCc
Confidence 4457888888875322100 00 0 01235677888888888 78999999999999999998 44444 5
Q ss_pred eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCCeEEEEEcccCCCCC
Q 011856 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSG 260 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G 260 (476)
.||+.+.+ |......+...|..+...+....... .-|++++++.+++. ...+++|+++.+++++|
T Consensus 88 ~Vi~~~~~-h~s~~~~~~~~g~~v~~v~~~~~~~~------------~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG 154 (364)
T d2e7ja1 88 WVVMDENC-HYSSYVAAERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEVVLALITYPDGNYG 154 (364)
T ss_dssp EEEEETTC-CHHHHHHHHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred EEEeeccc-ccccchHHHhccceEEEeeecccccc------------ccCHHHHHhhhhhhcccCCceEEEeecCCCCCc
Confidence 55555444 44344444555554443322111110 01799999999653 23577888888888899
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA 338 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~ 338 (476)
.+.| +++|.++|++||+++|+||+|+.-... .....++ .|++ +++|.++++-++|++++++++++.+...
T Consensus 155 ~~~~----l~~I~~ia~~~~i~livD~a~~~g~~~--~~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~ 226 (364)
T d2e7ja1 155 NLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR 226 (364)
T ss_dssp CCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCB
T ss_pred eeec----chhheeccccccchhhccccchhhhhh--hcccccc--cceeeeccccccCCCCCEEEEEECHHHHHHHHhh
Confidence 9998 999999999999999999999511111 1111223 4666 4669999655799999999887766432
Q ss_pred CCcc-------ccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 339 GPMY-------QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 339 ~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
...+ ...+. +.....+..++++.+.+ +.+. +..++.+++.+.|+++.... ............+...
T Consensus 227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~ 301 (364)
T d2e7ja1 227 SEKYKNKEVELLGCTA--RGATIITLMASFPHVRERIKRWD-EEVEKARRFAAEMEKLGIKQ--LGDNPHNHDLMFFHAE 301 (364)
T ss_dssp CSSCTTSBGGGTTCCC--CSHHHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHTTCEE--ESSSSCCSSEEEEECH
T ss_pred ccccCccccccccccc--chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCee--cCCCCCCcceEEEecc
Confidence 1111 11121 22233344445554432 3333 33455667777777653210 0000001111111111
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEE-eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT-SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~-~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
. ..... .. .......+...+.++|+.....+ ...+++ .+..|+||||+++++|++++++.
T Consensus 302 ~--~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 302 V--LYEIS-KK--AKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp H--HHHHH-HH--SSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred c--hHHHH-HH--hhccchHHHHHHHhcCCceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 0 00000 00 00011234556777887654333 233444 46679999999999999998864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.83 E-value=2.4e-20 Score=181.56 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEE-eCCCCCCc
Q 011856 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHA 195 (476)
Q Consensus 119 ~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~-~~~yhg~~ 195 (476)
.+.++..+.++. +..+.....++.+...+.+. ..+.+++++||++|+..++. ++.+++++|+. +...|..+
T Consensus 33 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~---al~~~~~vi~~~~~~~~~~~ 106 (366)
T d2aeua1 33 LIDEKDKALLNT---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL---ALKPKKVIHYLPELPGHPSI 106 (366)
T ss_dssp CCCHHHHHHHTS---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH---HHCCSEEEEECSSSSCCTHH
T ss_pred CccHHHHHHHHH---hcCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCCcchhH
Confidence 344444444433 33344455677776666664 35789999999999999997 56677777765 34567766
Q ss_pred hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC-CCcccCCHHHHHHHHH
Q 011856 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN-SGFIAPKPDFLNAIRR 274 (476)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~ 274 (476)
...+...|.. .++++|+++|++.+++ ++++|+++.++++ ++.+.+ |++|.+
T Consensus 107 ~~~~~l~g~~---------------------~v~~~d~e~l~~~i~~---~tk~i~~~~p~n~~~~~~~~----l~~i~~ 158 (366)
T d2aeua1 107 ERSCKIVNAK---------------------YFESDKVGEILNKIDK---DTLVIITGSTMDLKVIELEN----FKKVIN 158 (366)
T ss_dssp HHHHHHTTCE---------------------EEEESCHHHHHTTCCT---TEEEEEECBCTTSCBCCHHH----HHHHHH
T ss_pred HHHHHhcCCe---------------------EECCCCHHHHHHhcCC---CceEEEEEecCCCCcCCHHH----HHHHHH
Confidence 6655554431 2345689999888864 6888888765443 333333 999999
Q ss_pred HHHHhCCEEEEecccc-Ccccc-ccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCc
Q 011856 275 ITKENGALLIFDEVMT-GFRLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350 (476)
Q Consensus 275 l~~~~g~llI~DEv~~-g~r~g-~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~ 350 (476)
+|++||+++|+||+|. ++... .......++ .|++ +++|+++ |+++||+++++++++.++. .....+++.+
T Consensus 159 ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~--~di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~---~~~~~g~~~~ 232 (366)
T d2aeua1 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLG--ADLVVTSTDKLME-GPRGGLLAGKKELVDKIYI---EGTKFGLEAQ 232 (366)
T ss_dssp HHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT--CSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHH---HHHTTTCBCC
T ss_pred HhccCcEEEEEecCccccccccccCCCHhhcC--ceEEEeccccccc-ccceeEEEecHHHHHHHHH---HHhcccccCC
Confidence 9999999999999994 22211 111112334 3565 5666554 7999999999999998863 2222345667
Q ss_pred HHHHHHHHHHHHHh
Q 011856 351 PLAMTAGIHTLKRL 364 (476)
Q Consensus 351 ~~~~aaa~aal~~~ 364 (476)
|+.+.++.++|+.+
T Consensus 233 ~~~~~a~~~aL~tl 246 (366)
T d2aeua1 233 PPLLAGIYRALKNF 246 (366)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888754
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=9.9e-21 Score=186.60 Aligned_cols=334 Identities=13% Similarity=0.014 Sum_probs=189.3
Q ss_pred EecccChhhccCCCC--cHHHHHHHHHHHHh--cCCCCCC----CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 102 IDYVGSWGPAIIGHA--DDQVLAALGETMKK--GTSFGAP----CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 102 iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~--~~~~~~~----~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
||+..|...+.-|.. .|.|.+|....... ..+.+.+ .++++++++++.+... ..++++.+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 777777544556653 47788876543332 2222223 4566666666665543 36788877766666554
Q ss_pred HHHHHH--hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 171 VLRLAR--AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 171 al~~ar--~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
++.+.. ...+++.|++.+++|.++...+ ...|..+...++....+. ..|.+++.+.+...++...
T Consensus 109 ~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~-~~~G~~~~~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 175 (397)
T d3tata_ 109 KVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEVSTYPWYDEATN------------GVRFNDLLATLKTLPARSI 175 (397)
T ss_dssp HHHHHHHHHHCSSCCCEECSSCCTTHHHHH-HTTTCCCEECCCCCTTTS------------SCCHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhhhcCCCCcceecccCccccHHHH-HHcCCEEEEEecchhhcc------------ccchHHHHHHhhhcccccE
Confidence 444321 2356677888888888754444 444544443332111111 1267777777766555667
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hh-hccCCCCc---hhhhhhhcC-CCC
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQ-EYFGVTPD---LTTLGKIIG-GGL 320 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~-~~~g~~pD---i~t~sK~lg-~G~ 320 (476)
++++.+.+|++|.+.+.++ +++|.++|++||+++|+||+|.++ ..+... .. ...+...+ +.++||.++ .||
T Consensus 176 ~~~~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 254 (397)
T d3tata_ 176 VLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE 254 (397)
T ss_dssp CEECSSSCSSSCCCCCHHH-HHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT
T ss_pred EEEecCCCCCCCeeCCHHH-HHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc
Confidence 7777777777888776555 999999999999999999999988 433211 11 11122223 237999999 799
Q ss_pred cEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH---hhhcC
Q 011856 321 PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA---GKKAG 392 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~---~~~~~ 392 (476)
|+||++++...++..... .........+.+...++++...+..-.. .++.++++.+.+.++++.+.+ +....
T Consensus 255 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 334 (397)
T d3tata_ 255 RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp CCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998776543332210 0011222334445555555444431110 222333333333333322222 22221
Q ss_pred ----CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeC-CCcHHHHHHHHHH
Q 011856 393 ----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITA 466 (476)
Q Consensus 393 ----~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~-~~t~e~i~~~~~~ 466 (476)
+....+..|.|+++.+. .++++.|+ ++||++.+++ |+++ ..++++|+.+.++
T Consensus 335 ~~~~~~~~~~~~G~F~~~~ls------------------~e~~~~L~~e~~V~l~~g~----Ri~~a~~~~~~i~~~~~a 392 (397)
T d3tata_ 335 PERNFDYLLNQRGMFSYTGLS------------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRVAKA 392 (397)
T ss_dssp TTSCTTHHHHCCSSBCCCCCC------------------HHHHHHHTTTTCEECCSSS----CCBTTSCCTTTHHHHHHH
T ss_pred CCCceEEEcCCCceEEecCcC------------------HHHHHHHHHhCCEEeCCCC----EEEeccCCHHHHHHHHHH
Confidence 11223445656555431 23455665 5699998864 6764 5688999999888
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 393 i~~v~ 397 (397)
T d3tata_ 393 FAAVM 397 (397)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 87763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=5.1e-20 Score=181.29 Aligned_cols=333 Identities=15% Similarity=0.060 Sum_probs=193.1
Q ss_pred EecccChhhccCCC--CcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHH
Q 011856 102 IDYVGSWGPAIIGH--ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 102 iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al 172 (476)
||+..|..-+.-|. ..|.|.+|+.+.+++....+| ..++++++++++.+... .....+.+.+|+.+...++
T Consensus 29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
T d2ay1a_ 29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQAL 108 (394)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHH
T ss_pred EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHH
Confidence 45444422233444 358999999888876433222 34667777777765443 2345667777777776666
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
.+.....+++.|++.+++|-.+ .......|..+...+....... ..+.+++++......+.+.++++
T Consensus 109 ~~~~~~~~gd~V~~p~p~~~~y-~~~~~~~g~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~~~ 175 (394)
T d2ay1a_ 109 ELARMANPDLRVFVSDPTWPNH-VSIMNFMGLPVQTYRYFDAETR------------GVDFEGMKADLAAAKKGDMVLLH 175 (394)
T ss_dssp HHHHHHCTTCCEEEEESCCHHH-HHHHHHHTCCEEEEECEETTTT------------EECHHHHHHHHHTCCTTCEEEEE
T ss_pred HHhhhcCCceEEEEecccccch-HHHHHHcCCEEEEecccchhcc------------cccchhHHHHHhhcccCcEEEEe
Confidence 5544556677888888877653 3444444443322111000000 01567777777665556777777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc--hhhc-cCCCCc---hhhhhhhcC-CCCcEEE
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEY-FGVTPD---LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~-~g~~pD---i~t~sK~lg-~G~~iG~ 324 (476)
.+.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+... .... .....+ +.++||.++ .|+|+||
T Consensus 176 ~~p~NPTG~~~s~e~-~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~ 254 (394)
T d2ay1a_ 176 GCCHNPTGANLTLDQ-WAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254 (394)
T ss_dssp SSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEE
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccc
Confidence 777777888776555 999999999999999999999988 443211 1111 001112 236899998 6999999
Q ss_pred EEecHHHHHhhcCCC---CccccCCC-CCcHHHHHHHHHHHHH------hcC--CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 325 YGGRRDIMEMVAPAG---PMYQAGTL-SGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~---~~~~~~t~-~~~~~~~aaa~aal~~------~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+++....++...... ......++ +.+...++.+...+.. ..+ +.+.++++++++.+.+.|++++....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 334 (394)
T d2ay1a_ 255 LLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDR 334 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred hhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 988776554332100 00011122 2233333333322220 111 23455566666666667766543221
Q ss_pred CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeC-CCcHHHHHHHHHHHHHH
Q 011856 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKV 470 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~-~~t~e~i~~~~~~l~~~ 470 (476)
+....+..|.|.++.+. .++++.|+ ++||++.|++ |+++ ..++++|+.+.++|.++
T Consensus 335 ~~~~~~~~G~F~~~~ls------------------~~~~~~L~~~~~V~~~~g~----Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 335 FGFVAEHRGMFSRLGAT------------------PEQVKRIKEEFGIYMVGDS----RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHHH
T ss_pred eeeECCCceeEEecCcC------------------HHHHHHHHHhCCEEecCCC----EEEecCCCHHHHHHHHHHHHHh
Confidence 22223345655554331 23455665 6799999863 7774 47889999988888875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.81 E-value=1.9e-19 Score=171.07 Aligned_cols=319 Identities=12% Similarity=0.010 Sum_probs=168.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
++.| .||+|++|+.++.......+++.+..++++++++++++ ..++|+|++||||||..+++. ....+++++....
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~--~~~~~~~~~~~~~ 84 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSL--ALRPWEAVIATQL 84 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHH--HCCTTEEEEEETT
T ss_pred CCCC-CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHH--Hhhhccccccccc
Confidence 3445 69999999998765533223467888899999999987 467999999999999999984 3344555555444
Q ss_pred CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh---cCCCCeEEEEEcccCCCCCcccCCH
Q 011856 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
.++...................+.. ...+.+...+... ........+++....+++|.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (340)
T d1svva_ 85 GHISTHETGAIEATGHKVVTAPCPD--------------GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 150 (340)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCTT--------------SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred cceeeeecccccccceeeeeccccc--------------ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHH
Confidence 4333222222211111100000000 0012333333222 1122344555555556666666544
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cc--cccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCcc
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RL--AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMY 342 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~--g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~ 342 (476)
+ +..+.++|+++|.++++|+++.+. .. +............++.++++..+.+ ...++.............. ...
T Consensus 151 ~-~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (340)
T d1svva_ 151 E-LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL-IKQ 228 (340)
T ss_dssp H-HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH-HHH
T ss_pred H-hhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh-ccc
Confidence 4 889999999999999999999644 21 1111111111112334455555533 3344444444433322210 111
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc
Q 011856 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (476)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (476)
..++........+++.+.++........++..++..++++.|++. ++....+..+.++.+.+.
T Consensus 229 ~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~~~------------- 291 (340)
T d1svva_ 229 RGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPILE------------- 291 (340)
T ss_dssp TTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBEEE-------------
T ss_pred ccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEeCC-------------
Confidence 222333333333333332221111334445555555555555554 332222334455444432
Q ss_pred chHHHHHHHHHHHHC----CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHH
Q 011856 423 ETTKFARFYRGMLEE----GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 423 ~~~~~~~~~~~l~~~----Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~ 470 (476)
......|.++ |+...+.+...+|+ +..+|+||||+++++|+++
T Consensus 292 -----~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 292 -----NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -----HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 1334455555 44455555556777 5678999999999999863
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.79 E-value=9.8e-18 Score=163.91 Aligned_cols=329 Identities=13% Similarity=0.133 Sum_probs=202.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc---CCCCC-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~---~~~~~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
+...|+|..+ .|..+..|++++.+.++.. ..+.. ..+...++.+.++++++ ++++|+|++|||++
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 3456777443 4667888999998877641 11211 22445567788888887 57899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCCCCCCceeeccCCC-HHHHHHHHhcC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENN 243 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~ 243 (476)
+..++... ...+++.|++.+..|++....... ..|..+...+. .... ...+ .+.+++.+
T Consensus 80 ~~~~~~~l-~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~--~~~~-----------~~~~~~~~l~~~i--- 142 (381)
T d1elua_ 80 CDIVLWGL-DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV--AATL-----------NQGDAAAVLANHL--- 142 (381)
T ss_dssp HHHHHHHS-CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC--GGGS-----------SSSCHHHHHHTTC---
T ss_pred hhhcchhh-hhcCCceEEEeccccceeeecccccccccccccccccc--cccc-----------ccchHHHHHHhhh---
Confidence 99998842 234566777766666543332221 12332221111 0000 0012 33344333
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccCccccccchhhccCCCCchhh--hhhhcC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIG 317 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg 317 (476)
.++++++++..+++++|.+.| +++|.++|++| ++++++|.+|+ + |. ...+.-...+|+++ +.|.++
T Consensus 143 ~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~--g~-~~~~~~~~~~D~~~~s~~K~~~ 214 (381)
T d1elua_ 143 GPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-A--GS-LPLDFSRLEVDYYAFTGHKWFA 214 (381)
T ss_dssp CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-B--TT-BCCCTTTSCCSEEEEESSSTTC
T ss_pred cccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-c--cc-cccccccccccccccccccccc
Confidence 347899999999999999999 99999999985 69999999995 1 11 01111233567764 559998
Q ss_pred CCCcEEEEEecHHHHHhhcCCCCcc-------------------ccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHH
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAGPMY-------------------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLN 374 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~~~~-------------------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~ 374 (476)
+...+|++..+++..+.+.+..... .....+.+.....+..++++.+.. +...++..
T Consensus 215 ~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~ 294 (381)
T d1elua_ 215 GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC 294 (381)
T ss_dssp CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhh
Confidence 7667899999988877765311000 001113345555666666665544 23356777
Q ss_pred HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEe-
Q 011856 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS- 452 (476)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~- 452 (476)
++.+++.++|+++.. ..+.......+.++.+.+.... ..+.+.+.|.++||.++..+ ...+|++
T Consensus 295 ~~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~~-------------~~~~i~~~L~~~gi~v~~~~~~~~lRis~ 360 (381)
T d1elua_ 295 QRSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACC 360 (381)
T ss_dssp HHHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEEC
T ss_pred hHHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCCC-------------CHHHHHHHHHhCCcEEEecCCCCEEEEec
Confidence 778888888877521 1111111234556666653211 12467788999999987554 3467886
Q ss_pred -CCCcHHHHHHHHHHHHHH
Q 011856 453 -LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 453 -~~~t~e~i~~~~~~l~~~ 470 (476)
..+|++|||+++++|++.
T Consensus 361 ~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 361 HYITDEEEINHLLARLADF 379 (381)
T ss_dssp CTTCCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 446999999999999763
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.3e-18 Score=165.93 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=134.3
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~-----------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~ 168 (476)
|+|-.+. |..+|.|++|+.+.+.+...++.+ .+...++++.++++++ ++++|.|++|+|+++
T Consensus 5 YlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l 78 (391)
T d1p3wa_ 5 YLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 78 (391)
T ss_dssp ECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred EeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence 6664433 456899999999887754333322 1233456677888876 678999999999999
Q ss_pred HHHHHHHHh--ccCCceEEEEeCCCCCCchhHHh--hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 169 MGVLRLARA--FTGRERIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 169 ~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
..++..... ...++.|++.+..|++....... ..|..+...+...... -|++++++.++.
T Consensus 79 ~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~--------------~d~~~~~~~i~~-- 142 (391)
T d1p3wa_ 79 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGI--------------IDLKELEAAMRD-- 142 (391)
T ss_dssp HHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSC--------------CCHHHHHHHCCT--
T ss_pred HHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCe--------------EcHHHHHHhCCC--
Confidence 998875432 34567777777666554332222 2343332222111111 178999998863
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCc
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 321 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~ 321 (476)
++++|+++.+++++|.+.| +++|.++|++||+++++|.+|. |.. ..... ...+|++ +..|.+| +..
T Consensus 143 -~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~~g~~---~~d~~--~~~~D~~~~s~~k~~g-~~g 211 (391)
T d1p3wa_ 143 -DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGKL---PIDLS--QLKVDLMSFSGHKIYG-PKG 211 (391)
T ss_dssp -TEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTBTTB---CCCTT--TSCCSEEEEESTTTTS-CSS
T ss_pred -CcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccccCCc---cccch--hccccccccccccccC-CCc
Confidence 7999999999999999999 9999999999999999999994 221 11111 2345655 4567765 234
Q ss_pred EEEEEecHHHHHhhc
Q 011856 322 VGAYGGRRDIMEMVA 336 (476)
Q Consensus 322 iG~~~~~~~i~~~l~ 336 (476)
+|++..+++.+....
T Consensus 212 ~g~~~~~~~~~~~~~ 226 (391)
T d1p3wa_ 212 IGALYVRRKPRVRIE 226 (391)
T ss_dssp CEEEEECBTTBCCCC
T ss_pred eEEEEEecchhcccC
Confidence 788888877655443
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=8.6e-17 Score=158.33 Aligned_cols=324 Identities=15% Similarity=0.158 Sum_probs=205.0
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCC------CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAP------CLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~------~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~ 168 (476)
.|+|..+. |..++.|.+++.+.+++.... +.+ .+..++.++.+++++. ..+.++|++++|+++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence 36664433 456899999999988763211 111 1334566778888886 357999999999999
Q ss_pred HHHHHHH--HhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLA--RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~a--r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..+++.. ....+++.|++.+..||......... .|..+...+... .+. -|++.+++++.
T Consensus 98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~-~g~-------------~~~~~~~~~i~-- 161 (405)
T d1jf9a_ 98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGT-------------LQLETLPTLFD-- 161 (405)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSC-------------BCGGGHHHHCC--
T ss_pred HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC-CCc-------------CCHHHHHHhcc--
Confidence 9888742 23456678888888888766555433 244333222111 111 16777877776
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhh--hhhhcCCCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIGGGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t--~sK~lg~G~ 320 (476)
+++++|.+..+.+.+|.+.| +++|.++|+++|+++++|-+|+ |.. ...... ..+|+++ .-|.+| +-
T Consensus 162 -~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~~g~~---~id~~~--~~~D~~~~s~hK~~G-p~ 230 (405)
T d1jf9a_ 162 -EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQA--LDCDFYVFSGHKLYG-PT 230 (405)
T ss_dssp -TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHH--HTCSEEEEEGGGTTS-CS
T ss_pred -CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeecccceecccc---ccchhh--cCCceeecccccccc-CC
Confidence 37999999999999999999 9999999999999999999995 221 111122 2467765 559875 23
Q ss_pred cEEEEEecHHHHHhhcCCCC---------------------ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPAGP---------------------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~---------------------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (476)
.+|++..++++++.+.+... .+..+ +.|..+..+..++++.+.+-. .+++.+....
T Consensus 231 G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~G--T~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~ 307 (405)
T d1jf9a_ 231 GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG--TPNTGGIIGLGAALEYVSALG-LNNIAEYEQN 307 (405)
T ss_dssp SCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCS--SCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred CceeeeechhhhcccCcccccccccCccccccccccccchhhhcCC--CCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHH
Confidence 38999999998876543110 01112 346777777778888765411 2333333344
Q ss_pred HHHHHHHHhhhcCCceE--eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------------
Q 011856 380 LTQGIIDAGKKAGHAIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------ 445 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~--v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------ 445 (476)
+.+.+.+.....+.... ....+.++.+.+... + ...+...|.++||.++.+.
T Consensus 308 L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~-----------~---~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~ 373 (405)
T d1jf9a_ 308 LMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-----------H---AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNV 373 (405)
T ss_dssp HHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC-----------C---HHHHHHHHHHTTEECEEECTTCHHHHHHTTC
T ss_pred HHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC-----------C---HHHHHHHHHHCCcEEEccchhhhhHHHhcCC
Confidence 44444443333333221 122345555655321 1 2456677788999986542
Q ss_pred CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 446 FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|++ ..+|++|||+++++|+++.+-
T Consensus 374 ~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 374 PAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 2246775 566999999999999988764
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.74 E-value=7.6e-16 Score=151.63 Aligned_cols=321 Identities=14% Similarity=0.148 Sum_probs=203.5
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCC-------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~-------~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~ 168 (476)
.|+|-.+. |..++.|.+++.+.+++... .... .+..++.++.++++++ . .+.++|++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence 36775544 44689999999998876321 1111 1344567778888886 2 57799999999999
Q ss_pred HHHHHHH--HhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLA--RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~a--r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..++... ....+++.|++.+..|++........ .|..+...+.+.... .+.+.+++.+.
T Consensus 98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~--------------~~~~~l~~~~~-- 161 (408)
T d1t3ia_ 98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQES--------------FDLEHFKTLLS-- 161 (408)
T ss_dssp HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSS--------------BCHHHHHHHCC--
T ss_pred HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccccc--------------ccHHHhhhccC--
Confidence 8887643 23445677777776776655444322 233322221111111 16888888875
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhh--hhcCCCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLG--KIIGGGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~s--K~lg~G~ 320 (476)
+++++|.+..+++++|.+.| +++|.++|+++|+++|+|-+|+ |.. ..-... ..+|++++| |.+| +-
T Consensus 162 -~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~~g~~---~id~~~--~~~D~~~~s~hK~~g-p~ 230 (408)
T d1t3ia_ 162 -EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQL--IDCDWLVASGHKMCA-PT 230 (408)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHH--HTCSEEEEEGGGTTS-CT
T ss_pred -CCceEEEEecccccccccCc----HHHHhhhhhccCceeeeccceecccc---cccccc--cCCceEEeccccccC-CC
Confidence 37999999999999999999 9999999999999999999994 220 111122 245877544 8654 34
Q ss_pred cEEEEEecHHHHHhhcCCCC--------------------ccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPAGP--------------------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 377 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~--------------------~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 377 (476)
.+|++..++++.....+... .+..+ +.|..+.++..++++.+.+ +++.++..++.
T Consensus 231 G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~G--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 308 (408)
T d1t3ia_ 231 GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAG--TPAIAEAIALGAAVDYLTDLGMENIHNYEVELT 308 (408)
T ss_dssp TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCS--SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCC--cHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 48999999998776542100 01122 3366666777777887654 44555566666
Q ss_pred HHHHHHHHHHhhhcCCceEe------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------
Q 011856 378 GELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 445 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------ 445 (476)
+++.+.+.+. +....+ ...+.++.+.+... + ..++...|.++||.++.+.
T Consensus 309 ~~l~~~~~~~----~~~~~~~~~~~~~~~~~iv~f~~~~~-----------~---~~~v~~~L~~~gI~v~~G~~c~~~~ 370 (408)
T d1t3ia_ 309 HYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL-----------H---ASDVATMVDQDGIAIRSGHHCTQPL 370 (408)
T ss_dssp HHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB-----------C---HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred hHHhhhhccC----ccccccCCCccccCcceEEEEEeCCC-----------C---HHHHHHHHhhCCcEEecCcccccHH
Confidence 6666555543 211111 12244555554321 1 2456777888999987542
Q ss_pred ------CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 446 ------FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 ------~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|++ ..+|++|||++++.|+++++.
T Consensus 371 ~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 371 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2346775 556999999999999999875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.74 E-value=3.2e-17 Score=161.05 Aligned_cols=306 Identities=11% Similarity=-0.015 Sum_probs=175.0
Q ss_pred ccCCCCcHHHHHH-HHHHHHh------c---CCCCCC---CHHHHHHHHHHHhhC---C----CCCeEEEeCCHHHHHHH
Q 011856 111 AIIGHADDQVLAA-LGETMKK------G---TSFGAP---CLLENVLAEMVISAV---P----SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 111 ~~lG~~~p~v~~a-~~~~l~~------~---~~~~~~---~~~~~~la~~l~~~~---~----~~e~v~~~~sGseA~~~ 170 (476)
..+++++|.+.+. .++.... + .+|.+. ..+..+|.+.+.+++ + +..+|++++|++|++.+
T Consensus 59 ~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~ 138 (425)
T d2hoxa1 59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHG 138 (425)
T ss_dssp EECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHH
T ss_pred eeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHH
Confidence 4577778877665 3332222 1 112111 122345555555543 2 33479999999999999
Q ss_pred HHHHHHh------ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 171 VLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 171 al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
++....- ..++++||+..+.|-.+.. .....+.. .+.++. |.+.+++.++.
T Consensus 139 ~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~-~~~~~~~~-------------------~~~~~~-D~~~~~~~~~~-- 195 (425)
T d2hoxa1 139 LVISLSPNMTATPDAPESKVVAHAPFYPVFRE-QTKYFDKK-------------------GYVWAG-NAANYVNVSNP-- 195 (425)
T ss_dssp HHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH-HHHHSCBT-------------------TEEEEE-EGGGGTTCSCG--
T ss_pred HHHHhccccccccCCCCCEEEEecCccccHHH-HHHHcCCC-------------------CCccCC-CHHHHHhhCCC--
Confidence 9983211 2345788888887755332 22222211 111111 55555554432
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC-CCC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGL 320 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~ 320 (476)
++++++++..+|++|.+.. +..+++.+|.||+|.+. .+.-. ... ..+|+ +|||.+| +||
T Consensus 196 -~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~~~---~~~--~~~Ivl~S~SK~fglaGl 258 (425)
T d2hoxa1 196 -EQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTPIK---YKA--DEDILLFTMSKFTGHSGS 258 (425)
T ss_dssp -GGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCSTTTSCCC---SCB--CCSEEEEEHHHHTSCGGG
T ss_pred -CceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccCccccchh---hhc--CCeEEEEeCHHhccCcch
Confidence 4555555444555666532 12368999999999643 11110 011 12333 7999999 899
Q ss_pred cEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc--------C-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 321 PVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--------E-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 321 ~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|+||+++ ++.+++.+. ......+++.+.+++.+++++|+... . .++.+..++..+.-++.|.+....
T Consensus 259 RiGw~i~~~~~i~~~~~---~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 335 (425)
T d2hoxa1 259 RFGWALIKDESVYNNLL---NYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (425)
T ss_dssp CCEEEEECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heeeEEeCCHHHHHHHH---HhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999755 566767665 23345577888999999998886531 1 333333333322223333333222
Q ss_pred cCC---------------ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceE
Q 011856 391 AGH---------------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGF 450 (476)
Q Consensus 391 ~~~---------------~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~ 450 (476)
.+. .......+.+.++.+..+. ...+.+.|.++||++.|+. ..++|
T Consensus 336 ~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--------------~~~~~~lL~e~gI~v~pGs~FG~~~~yvR 401 (425)
T d2hoxa1 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--------------DKDCYQTFQNGRINTQNGVGFEASSRYVR 401 (425)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--------------GCSHHHHHHHTTEECEEGGGGTSCTTEEE
T ss_pred cCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--------------HHHHHHHHHhCCEEEEechhcCCCCCEEE
Confidence 221 1123344455555543211 0123456789999999762 34689
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHH
Q 011856 451 TSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+++..++|++++++++|++++++
T Consensus 402 isl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 402 LSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EECSSCHHHHHHHHHHHHHHHTC
T ss_pred EEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998863
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.73 E-value=6.5e-17 Score=160.82 Aligned_cols=294 Identities=11% Similarity=0.033 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCH-HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCC
Q 011856 141 ENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVP 218 (476)
Q Consensus 141 ~~~la~~l~~~~~~~e~v~~~~sG-seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~ 218 (476)
+.++...+++.++......++.+| ++++++++...|...+++.|| ....-|.+...++...|..+..+.. +..
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi-~s~~~H~s~~k~~~~~g~~~~~v~~~~~~---- 189 (434)
T d2z67a1 115 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVI-YPYASHKSPIKAVSFVGMNMRLVETVLDG---- 189 (434)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHTTCEEEEECCEEET----
T ss_pred HHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEE-EeccCCHHHHHHHHHhCCcceEEEeecCC----
Confidence 345556667777544555555544 455555665444444555554 4566777777777666664332111 000
Q ss_pred CCCCCceeeccCCCHHHHHHHHhcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc
Q 011856 219 KGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (476)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (476)
+.. ..|+++|++.++++ .+.+.+|++...+..+|.+.+ +++|.++|++||++|++|++|.++ ...
T Consensus 190 -----~~~---~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~ 257 (434)
T d2z67a1 190 -----DRV---YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYY 257 (434)
T ss_dssp -----TEE---ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred -----Ccc---CCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhc
Confidence 011 12899999999753 236778888877777899888 999999999999999999999644 211
Q ss_pred ccchhhccCCCCchhh--hhhhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 296 YGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
............|+++ ..|.++++...|++.. ++++++.+.. .....+...+...+.+++..+......+..++
T Consensus 258 ~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~ 334 (434)
T d2z67a1 258 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRASATPVVNTLVSLLSMGSKNYLELVKN 334 (434)
T ss_dssp HHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHh---hcccccccchHHHHHHHHHHHHHhcchhHHHH
Confidence 1111112233467775 5599987666677754 5667777763 23333333333333333333322222567788
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC--------
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------- 444 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------- 444 (476)
..++.++++++|+++....+....-......+.+.+.. + ..++...|.++||.....
T Consensus 335 ~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~------------~---~~~l~~~L~~~gI~g~~v~~~l~~~g 399 (434)
T d2z67a1 335 QKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS------------D---PVEIAAKLYNLRVTGPRGIKKTDHFG 399 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS------------C---HHHHHHHHHHTTEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC------------C---HHHHHHHHHHcCCeeeehhhhccccC
Confidence 88889999999998765544221111112222222211 1 245677888999854211
Q ss_pred -------CCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 445 -------QFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 445 -------~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
..+.+++ +..+|+||||.++++|++
T Consensus 400 ~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 400 NCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp HTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred eeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 0122344 456799999999999986
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.9e-16 Score=152.72 Aligned_cols=296 Identities=9% Similarity=0.020 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh-hcCCCCccCCCCCCC
Q 011856 139 LLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSP 215 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~ 215 (476)
+...+..+.|+++++- ...|+|+.|||+++++++.. ...+++++++....+++....... ..+..+.....+...
T Consensus 52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1h0ca_ 52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVN--VLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGG 129 (388)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHH--HCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHH--hhccCCceeeecccceeeeeccccccccccccccccCCcc
Confidence 4456777777777752 33689999999999999985 245667777776655543222221 122222221111111
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (476)
.. |.+.+++.+... +++++.+..+.+.+|.+.| +++|.++|++||+++++|.+|+ |.
T Consensus 130 ~~--------------~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs~g~-- 187 (388)
T d1h0ca_ 130 HY--------------TLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVASLGG-- 187 (388)
T ss_dssp CC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTTTTT--
T ss_pred cc--------------chHHHHHHhccC--CcceEEEeeeeeccccccC----HHHHHHHhhcccccceecccccccc--
Confidence 11 677777766643 5677788888888999999 8899999999999999999995 21
Q ss_pred cccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCCCc--------------------cccCCCCCcHH
Q 011856 295 AYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPL 352 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~~~--------------------~~~~t~~~~~~ 352 (476)
...+......|++++| |.+++--.+|++..+++.++.+...... ........+..
T Consensus 188 ---~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 264 (388)
T d1h0ca_ 188 ---TPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVI 264 (388)
T ss_dssp ---SCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHH
T ss_pred ---ccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHH
Confidence 1111122334766554 8887533477888888877766431100 00111224455
Q ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHH
Q 011856 353 AMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (476)
Q Consensus 353 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (476)
...+..++++.+.+ +...++..++.+++++.+.+.....-....-.....++.+.+.+ .....+
T Consensus 265 ~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~-------------~~~~~~ 331 (388)
T d1h0ca_ 265 SLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPA-------------GYDWRD 331 (388)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCT-------------TCCHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCC-------------CCCHHH
Confidence 66667777776654 44556666777777777776643211111011122344444422 112356
Q ss_pred HHHHHHHC-CeEeccCC----CcceEEe---CCCcHHHHHHHHHHHHHHHHHh
Q 011856 430 FYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 430 ~~~~l~~~-Gv~~~~~~----~~~~~~~---~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+...|+++ ||.+..+. ...+|++ ..+|++|||+++++|+++++++
T Consensus 332 ~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l 384 (388)
T d1h0ca_ 332 IVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC 384 (388)
T ss_dssp HHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 77777655 99887653 2356886 3578999999999999999876
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.69 E-value=1.9e-15 Score=148.52 Aligned_cols=329 Identities=12% Similarity=0.045 Sum_probs=200.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC--------CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~--------~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
++..|+|..+ .|..+..|.+++.+.+.+..... ...+..++..+.++++++ .+++++|++++|++
T Consensus 26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 3456777543 46678899999999886532111 112556688899999997 68899999999999
Q ss_pred HHHHHHHHH----hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 168 CMGVLRLAR----AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 168 ~~~al~~ar----~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
+..++.... .....+.+|+.+..++......... +..+... + +..-...+++.+++.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~--~------------~~~~~~~~~~~~~~~i~~- 163 (404)
T d1qz9a_ 100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADMLQQ--G------------YTLRLVDSPEELPQAIDQ- 163 (404)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHHCS--S------------CEEEEESSGGGHHHHCST-
T ss_pred HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheeeee--c------------eeccccccchhHHHhcCC-
Confidence 988776321 2234566777776665433222211 1111000 0 000011156777777763
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
++++|.+..+++.+|.+.| +++|.++|+++|+++++|-+|+ |.. ....+.. .+|.+ +..|.+.+|-
T Consensus 164 --~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~~g~~---~~~~~~~--~~d~~~~s~~K~~~~~~ 232 (404)
T d1qz9a_ 164 --DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAV---PVDLHQA--GADYAIGCTYKYLNGGP 232 (404)
T ss_dssp --TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTS---CCCHHHH--TCSEEEECSSSTTCCCT
T ss_pred --CceEEEEecccccccceec----HHHHhccccccccceeEEeecccccc---ccccccc--cceEEEEechhhcccCC
Confidence 7999999999999999999 9999999999999999999994 220 1111222 34555 4458776443
Q ss_pred -cEEEEEecHHHHHhhcCCCCc--------------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHH
Q 011856 321 -PVGAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKI 376 (476)
Q Consensus 321 -~iG~~~~~~~i~~~l~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~ 376 (476)
-+|++..++++.+.+...... ........+........+.++.+.+ +...++...+
T Consensus 233 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (404)
T d1qz9a_ 233 GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLAL 312 (404)
T ss_dssp TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 357777777766544321000 0011123355666666666666554 3344444555
Q ss_pred HHHHHHHHHHHhhhcCCce----EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe
Q 011856 377 TGELTQGIIDAGKKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 452 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~ 452 (476)
...+.+.+..+....++.. +....+.++.+.+. + ..++.+.|.++||.+.......+|++
T Consensus 313 ~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-------------~---~~~v~~~L~~~gi~~~~r~~~~lRiS 376 (404)
T d1qz9a_ 313 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREPRIMRFG 376 (404)
T ss_dssp HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETTTEEEEE
T ss_pred HHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC-------------C---HHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 5555554444433222211 11123445444432 1 25678889999998754334568887
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHh
Q 011856 453 L---AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~---~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ .+|++|||+++++|++++++-
T Consensus 377 ~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 377 FTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 5 369999999999999999863
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.68 E-value=6.9e-16 Score=153.39 Aligned_cols=347 Identities=14% Similarity=0.007 Sum_probs=189.6
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
..+||+.+-.++ + .+.+++..++..|...+.-++...+|.+.+++++ +.+.+++++||+.|+..+++ .+
T Consensus 42 ~v~iDl~sDs~t---~----am~~~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~-G~e~al~~~SGt~An~~a~~---~l 110 (456)
T d1c7ga_ 42 DIYIDLLTDSGT---N----AMSDKQWAGMMIGDEAYAGSENFYHLEKTVKELF-GFKHIVPTHQGRGAENLLSQ---LA 110 (456)
T ss_dssp GCSEECSCSSSC---C----CEEHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHH---HH
T ss_pred ceeeEcccCCCc---c----cchHHHHHHHhccchhccCCchHHHHHHHHHHHh-CCCeEEECCCHHHHHHHHHH---Hh
Confidence 347788765332 1 1223333333344333345677778888888888 88999999999999999999 55
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc-CCCHHHHHHHHhcCC-CCeEEEEEcccC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNK-GEIAAIILEPVV 256 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~-~~~a~vi~ep~~ 256 (476)
.++++.|+....|+.+. ......|.......... +.. ......+. ..|+++|++.++++. +.++.+++|..+
T Consensus 111 ~~~Gd~Vi~~~~f~~~~-~~i~~~g~~~~~~~~~~--~~~---~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~ 184 (456)
T d1c7ga_ 111 IKPGQYVAGNMYFTTTR-FHQEKNGATFVDIVRDE--AHD---ASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTV 184 (456)
T ss_dssp CCTTEEEEESSCCHHHH-HHHHHTTEEEEECBCGG--GGC---TTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSB
T ss_pred cCCCCeEecCcchHHHH-HHHHHcCceeeeccccc--ccc---ccccCCccccCCHHHHHHHhhhcCCccceeEEeeecc
Confidence 67777776655444422 22233332211100000 000 00000111 128999999998643 467788888877
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C---c-c--c-cccc------hhhccCCCCchh--hhhhhcCCCC
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F-R--L-AYGG------AQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g---~-r--~-g~~~------~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
+.+|..+.+.+.+++|+++|++||+.|+.|+++. | + . . +... ..+.++ ..|++ +++|.++++
T Consensus 185 n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad~~s~s~~K~~~~~- 262 (456)
T d1c7ga_ 185 NLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFS-YADGCTMSGKKDCLVN- 262 (456)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEEEEETTTTTCCS-
T ss_pred cccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccc-ccccEEEecccccccc-
Confidence 7766666677779999999999999999999984 1 1 0 0 0000 001111 24655 456777642
Q ss_pred cEEEEEec-HHHHHhhcCCCCc-cccCCCCCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 321 PVGAYGGR-RDIMEMVAPAGPM-YQAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 321 ~iG~~~~~-~~i~~~l~~~~~~-~~~~t~~~~-~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
..|+++++ +++.+.++..... ....++++. ...+.+....+....+.+..++..++.++|.++|.+.+. ++. .
T Consensus 263 ~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~--~vv--~ 338 (456)
T d1c7ga_ 263 IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGV--PIV--E 338 (456)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC--CBC--S
T ss_pred ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccC--Ccc--c
Confidence 23556555 4566555421000 112223322 333333333344444455666777788899998887632 221 1
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHH-HHHHHHHCCeEeccCC-----------------CcceEEeC---CCc
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFAR-FYRGMLEEGVYFAPSQ-----------------FEAGFTSL---AHS 456 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~Gv~~~~~~-----------------~~~~~~~~---~~t 456 (476)
+..+....++..... .....+...... +...+.+.||...+.+ ...+|+++ .+|
T Consensus 339 p~g~~~v~vda~~~~-----~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T 413 (456)
T d1c7ga_ 339 PTGGHAVFLDARRFC-----PHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYT 413 (456)
T ss_dssp SCCSSEEEEEHHHHC-----TTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCC
T ss_pred CCCCcceeEechhhc-----cCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCC
Confidence 233333333321100 000011111223 3344457788653321 11256643 469
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVKMR 473 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~ 473 (476)
++|||.++++|+++++.
T Consensus 414 ~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 414 YAHMDVVADGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=4.5e-15 Score=144.41 Aligned_cols=324 Identities=18% Similarity=0.199 Sum_probs=184.6
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~ 169 (476)
+-|+|..++ +..++.|.+++.+.++.... .+.+ .+...+..++++++++ .+++|+|++|+|+++.
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN 75 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 457775443 44689999999998876321 1111 1223345667777776 6789999999999999
Q ss_pred HHHHHH-HhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 170 GVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 170 ~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
.++... .....++++++....+|......... .|..+...+.... + .-|++++++++++
T Consensus 76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~-~-------------~id~~~l~~~i~~--- 138 (376)
T d1eg5a_ 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-G-------------VVKLEELEKLVDE--- 138 (376)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-S-------------CBCHHHHHHHCCT---
T ss_pred hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC-C-------------eECHHHHHHhcCC---
Confidence 988743 34455666666666666655444322 2433322221111 1 0178999999874
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
++++|++..+++.+|.+.+ ++++.++|+.+ ++++++|.+|. |. ...+.-...+|++ ++.|.+|+ -
T Consensus 139 ~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~~g~-----~~~d~~~~~~D~~~~s~~K~~gp-~ 208 (376)
T d1eg5a_ 139 DTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQTIGK-----IPFSLEKLEVDYASFSAHKFHGP-K 208 (376)
T ss_dssp TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTTTTT-----SCCCCTTTCCSEEEEEGGGGTSC-T
T ss_pred CceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeecccc-----ccccccccCccceecccceeecC-C
Confidence 7999999999999999999 89999998776 89999999994 22 0111122345765 57798763 2
Q ss_pred cEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 321 PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
..|++..+++. .+.+. ...........+......+.+..+.... ............++.++|..........
T Consensus 209 G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (376)
T d1eg5a_ 209 GVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP 286 (376)
T ss_dssp TCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC
T ss_pred CceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccccccccc
Confidence 24555445442 12210 0011111122344444444444443322 3333444445555555554432111000
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----------------------cceEE
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT 451 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~~~ 451 (476)
.. ......+.+.+.. .....+...|.++||.++.+.. +.+|+
T Consensus 287 ~~-~~~~~~~~~~~~~--------------~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRi 351 (376)
T d1eg5a_ 287 LE-ISLPNTLSVSFPN--------------IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRI 351 (376)
T ss_dssp TT-SBCTTEEEEECTT--------------CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEE
T ss_pred cc-ccccceeeeccCC--------------CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEE
Confidence 00 0111122222211 1125666777889998865310 13677
Q ss_pred eC--CCcHHHHHHHHHHHHHHHH
Q 011856 452 SL--AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 452 ~~--~~t~e~i~~~~~~l~~~~~ 472 (476)
++ .+|++|||+++++|+++++
T Consensus 352 S~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 352 SLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Confidence 64 4599999999999999986
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1.9e-15 Score=150.53 Aligned_cols=307 Identities=11% Similarity=0.002 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHH-HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCC
Q 011856 139 LLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDS 214 (476)
Q Consensus 139 ~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~ 214 (476)
.++.++.+++++.++ ......++++|+++...++.++ |....+.++|+....-|.....++...|.+...+.. +..
T Consensus 94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~ 173 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEG 173 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccC
Confidence 355677788887765 3457888898887666655544 344444555556666788777777777764332111 000
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
+...+ |+++|++.+++.. +.+++|++...++..|.+.+ +++|.++|++||++||+|++|.++
T Consensus 174 ---------~~~~i---d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~ 237 (445)
T d3bc8a1 174 ---------DELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 237 (445)
T ss_dssp ---------TEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred ---------ccccc---CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhh
Confidence 01111 8999999997632 35788888887778899988 999999999999999999999643
Q ss_pred c-cccc--chhhccCCCCchhh--hhhhcCCCCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC
Q 011856 293 R-LAYG--GAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 293 r-~g~~--~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (476)
. .... +....- ..|+++ ..|.++++...|+++.+ .++.+.+.. .+.+.......+.+.+.+..+..-..
T Consensus 238 ~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~ 312 (445)
T d3bc8a1 238 SKCMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRASASPSLDVLITLLSLGCSGY 312 (445)
T ss_dssp HHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCBCSHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhhcccCcchHHHHHHHHHHhhhcc
Confidence 2 1111 111111 246654 56998876667777554 556665542 11222212222333333222221111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc--
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-- 443 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 443 (476)
....++..++.+++++.|.++...++. ....+.......+.+..... .......++...|.+.||....
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~--------~~~~~~~~l~~~L~~~gI~~~~~~ 384 (445)
T d3bc8a1 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG--------HHDKAVTQLGSMLFTRQVSGARAV 384 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS--------SSSCHHHHHHHHHHHTTCCSCEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc--------cCCCCHHHHHHHHHHcCCCcceee
Confidence 456667777888899999887655542 22333344444444432111 0112234567778888763211
Q ss_pred --C-------------C-------CcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 444 --S-------------Q-------FEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 444 --~-------------~-------~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
. + .+.+++ +..+|+||||.++++|+++++++
T Consensus 385 ~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~ 439 (445)
T d3bc8a1 385 PLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 439 (445)
T ss_dssp CSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0 011344 45679999999999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=5.7e-15 Score=142.75 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhhCC-CCCe--EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH-HhhcCCCCccCCCCCC
Q 011856 139 LLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDS 214 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~~e~--v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~ 214 (476)
+..++..+.+++++. ..+. ++|+.|||++++.++.. ....++++++....+++..... ....+........+..
T Consensus 33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (361)
T d1m32a_ 33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS--ALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV 110 (361)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH--SCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHH--hhhhccccceeeehhhhhhHHHHhhhhhccccccccccc
Confidence 445677777777775 2333 77889999999999984 2344556666655544432222 2222222111000000
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (476)
.. .+.+..+..... .++++.+.+..+.+.+|.+.| +++|.++|++||+++++|-+|+ |..
T Consensus 111 ~~--------------~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs~G~~ 171 (361)
T d1m32a_ 111 AR--------------PDVQAIDAILNA-DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGI 171 (361)
T ss_dssp SC--------------CCHHHHHHHHHH-CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred CC--------------ccchhhHHHHHh-ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccccCcc
Confidence 00 022222222221 247888888999889999999 9999999999999999999995 221
Q ss_pred ccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCCCc---------------cccCCCCCcHHHHHH
Q 011856 294 LAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM---------------YQAGTLSGNPLAMTA 356 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~~~---------------~~~~t~~~~~~~~aa 356 (476)
..+.-....|++++| |.+++..-+|++..+++.++...+.... ......+.+...+.+
T Consensus 172 -----~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 246 (361)
T d1m32a_ 172 -----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLA 246 (361)
T ss_dssp -----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred -----cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhH
Confidence 111223346777665 8886534488999999888776542110 011123445566666
Q ss_pred HHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 357 GIHTLKRLKEPGTYEY----LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 357 a~aal~~~~~~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
...+++.+..+...+. .....+.+++.++............+. ..++.+.+..+. .....++.+
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs-~~v~~~~~p~~~-----------~~~~~~~~~ 314 (361)
T d1m32a_ 247 FAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHS-PIITAFYSPEDP-----------QYRFSEFYR 314 (361)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEECCCCT-----------TCCHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcC-CcEEEEECCCCC-----------CCCHHHHHH
Confidence 6666665544333333 344444444444443222111111111 223344442211 111357889
Q ss_pred HHHHCCeEeccCC---CcceEEeC--CCcHHHHHHHHHHHHHHH
Q 011856 433 GMLEEGVYFAPSQ---FEAGFTSL--AHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 433 ~l~~~Gv~~~~~~---~~~~~~~~--~~t~e~i~~~~~~l~~~~ 471 (476)
.|.++|+.+.++. ...+|++. .++++||++++++|++++
T Consensus 315 ~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 315 RLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999987653 23568863 579999999999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=2.2e-14 Score=139.40 Aligned_cols=309 Identities=14% Similarity=0.053 Sum_probs=182.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
.++-++++.+.++.+.... -+...+|.+++++++ +.+.+++++|||.|+..|++.. ....+++||+...+|+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--G~~v~~~E~~la~~~-g~~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~~~ 86 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT--GPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTLN 86 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCcC--CHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEeccccccccc
Confidence 3566688889888864322 345567888888887 6789999999999999999842 24566778887766666444
Q ss_pred hHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
. +...|..+..... +.... -|+++|++.+++ .+++|++.+.. |...+ +++|.++
T Consensus 87 a-i~~~g~~pv~~d~~~~~~~--------------~d~~~l~~~i~~---~tkaIi~~h~~---G~~~~----~~~i~~i 141 (376)
T d1mdoa_ 87 M-IVLLGANPVMVDVDRDTLM--------------VTPEHIEAAITP---QTKAIIPVHYA---GAPAD----LDAIYAL 141 (376)
T ss_dssp H-HHHTTCEEEEECBCTTTCC--------------BCHHHHHHHCCT---TEEEECCBCGG---GCCCC----HHHHHHH
T ss_pred c-hhccccceeeecccccccC--------------CCHHHHHHhcCC---CCeEEEEeCCC---CCccc----hhHHHHH
Confidence 4 4444443221111 11111 189999999974 67888876654 55566 8999999
Q ss_pred HHHhCCEEEEecccc-Ccc-ccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec-HHHHHhhc---CCCC-------
Q 011856 276 TKENGALLIFDEVMT-GFR-LAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVA---PAGP------- 340 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~r-~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~-~~i~~~l~---~~~~------- 340 (476)
|++||++||.|.+|+ |.. .+.. ...+|. .+.+| +|.+++| -.|.++++ +++.+.++ ..+.
T Consensus 142 ~~~~~i~vIeD~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~ 216 (376)
T d1mdoa_ 142 GERYGIPVIEDAAHATGTSYKGRH--IGARGT--AIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDR 216 (376)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE--TTSSSE--EEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC----
T ss_pred HHhcCceEEeccchhccCeeCCee--cccccC--ccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCccccccc
Confidence 999999999999995 221 1111 011121 22233 4888754 25666654 55555443 1110
Q ss_pred -----------ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCc-eEeeeeceeEEEE
Q 011856 341 -----------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHA-ICGGYISGMFGFF 407 (476)
Q Consensus 341 -----------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~-~~v~~~g~~~~i~ 407 (476)
...+..+..+.+.++.+...|+.+ +++.++.+++.+++.+.|.++.... ... ......-..+.+.
T Consensus 217 ~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (376)
T d1mdoa_ 217 QSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIR 294 (376)
T ss_dssp -------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEE
T ss_pred ccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccccccccccccccccccccccc
Confidence 001223345567777666666544 4567777778888888877642111 100 0011111111111
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEe--CCCcHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDI 460 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~--~~~t~e~i 460 (476)
+.... .....+++.+.|.++||-++....+ .++++ ...|++|+
T Consensus 295 ~~~~~----------~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei 364 (376)
T d1mdoa_ 295 VDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 364 (376)
T ss_dssp CCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred ccccc----------chhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence 11000 0001246889999999977532110 13443 35599999
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
+++++.|++++
T Consensus 365 ~~I~~~i~~i~ 375 (376)
T d1mdoa_ 365 DRVITALHQIA 375 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.62 E-value=2.3e-14 Score=139.55 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=187.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
+.+-.+++.+.++.+..+....+...++.+++++++ +.+.+++++|||.|+++|++.. ....+++||+..-+|.. +.
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~-g~~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a-~~ 88 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH-GAAHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFIS-SS 88 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTH-HH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEecccccc-cc
Confidence 456678899999987432233455677888888888 7789999999999999999842 34566788887766655 44
Q ss_pred hHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
.++...|..+...+. +.... -|++.+++.+.. ++++|++....+. ... +++|.++
T Consensus 89 ~ai~~~g~~p~~~d~~~~~~~--------------~d~~~~~~~i~~---~tk~i~~~~~~g~---~~d----~~~i~~~ 144 (384)
T d1b9ha_ 89 QAAQRLGAVTVPVDVDAATYN--------------LDPEAVAAAVTP---RTKVIMPVHMAGL---MAD----MDALAKI 144 (384)
T ss_dssp HHHHHTTCEEEEECBCTTTCC--------------BCHHHHHHHCCT---TEEEECCBCGGGC---CCC----HHHHHHH
T ss_pred ccccccccccccccccccccc--------------cchhhhcccccc---ccccccccccccc---ccc----cccchhh
Confidence 444444443221111 11111 178999988763 6888877766543 444 8999999
Q ss_pred HHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhh----hhhhcCCCCcEEEEEec-HHHHHhhcC---CC------
Q 011856 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTT----LGKIIGGGLPVGAYGGR-RDIMEMVAP---AG------ 339 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t----~sK~lg~G~~iG~~~~~-~~i~~~l~~---~~------ 339 (476)
|++++++||.|.+|+ |- ..|. ..|-.-|+.+ .+|.+++| ..|+++++ +++.+.++. .+
T Consensus 145 ~~~~~i~lieD~a~a~ga~~~g~-----~~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~ 218 (384)
T d1b9ha_ 145 SADTGVPLLQDAAHAHGARWQGK-----RVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRD 218 (384)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-----EGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTT
T ss_pred hhhhhhhhhhhhceecccccCCE-----ecCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 999999999999995 22 2221 1122234443 35888754 36666654 555444321 00
Q ss_pred --C---ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe---eeeceeEEEEEecC
Q 011856 340 --P---MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTEG 411 (476)
Q Consensus 340 --~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v---~~~g~~~~i~~~~~ 411 (476)
. ...+..+-.+.+.++.++..|+.+ ++..++-+++.+++.+.|.++..-.+..... .....++.+.+..
T Consensus 219 ~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 295 (384)
T d1b9ha_ 219 DRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG- 295 (384)
T ss_dssp CSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT-
T ss_pred cccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecc-
Confidence 0 112233446777777777766544 4566666777777777776532100000011 1111222232211
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---------------------------------ceEEeC--CCc
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTSL--AHS 456 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------------------~~~~~~--~~t 456 (476)
......+.+.+.|.++||-++....+ .++++. ..|
T Consensus 296 ----------~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt 365 (384)
T d1b9ha_ 296 ----------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 365 (384)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred ----------cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCC
Confidence 12234467999999999976543110 134443 345
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 011856 457 -SDDIQHTITAAEKVKMR 473 (476)
Q Consensus 457 -~e~i~~~~~~l~~~~~~ 473 (476)
++|++..++.|++++.+
T Consensus 366 ~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 366 GEPELHATAEIIADAVAR 383 (384)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 67999999999998875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=3.3e-14 Score=136.44 Aligned_cols=215 Identities=16% Similarity=0.157 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|++.|+++. +.+..+.++||..|+..++.. ....+++|++.+..|+|....+-.... ..|
T Consensus 57 ~nPT~~~LE~~la~LE-g~~~a~~~~SGmaAi~~~l~~--l~~~Gd~vl~~~~~Yg~t~~l~~~~~~----------~~G 123 (392)
T d1gc0a_ 57 SNPTLNLLEARMASLE-GGEAGLALASGMGAITSTLWT--LLRPGDEVLLGNTLYGCTFAFLHHGIG----------EFG 123 (392)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSCCSHHHHHHHHTGG----------GGT
T ss_pred CChHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHHHh--hccCCCeeecccccchhhhhhhhhhhc----------cCC
Confidence 4566778888888877 678889999999999999874 245678888888889885433321111 012
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (476)
.++..++..|+++++++++. ++++|++|.+.|+...+.+ ++.|.++|+++|+++|+|.++. .+
T Consensus 124 ------i~~~~~d~~d~~~~~~ai~~---~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~atP~--- 187 (392)
T d1gc0a_ 124 ------VKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPY--- 187 (392)
T ss_dssp ------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHH---
T ss_pred ------cccccCCccCHHHHHHhCCC---CCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccCcc---
Confidence 23555666789999999874 7899999999999999999 9999999999999999999984 22
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
.+..+..-.||+ +++|.++| | .-.|.++++++.++.++.. ......-...+|..+...+..|+-+ +-.++
T Consensus 188 ---~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-~~~~~~G~~~~p~da~ll~rgl~TL--~lRm~ 261 (392)
T d1gc0a_ 188 ---LQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 261 (392)
T ss_dssp ---HCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ---ccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-HHHHccCCcCChhhHHHHHhccccH--HHHHH
Confidence 222233345766 68899986 4 6678888998887654310 1111111245677766666655433 34556
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIID 386 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (476)
+..++...+.+.|++
T Consensus 262 ~~~~nA~~lA~~L~~ 276 (392)
T d1gc0a_ 262 RHCANAQVLAEFLAR 276 (392)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666777777776664
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.59 E-value=1.5e-14 Score=144.64 Aligned_cols=322 Identities=11% Similarity=-0.023 Sum_probs=173.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh-HHhhcCCCCccCCCC-CC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLP-DS 214 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~-~~ 214 (476)
+.....++.+.+++++ +.++++|+++||.++..|+.. +..++++.|+.+...|.+... ...+.+.++...... +.
T Consensus 64 ~~~~i~eae~~~A~~~-ga~~a~f~~~Gtt~~n~a~i~--a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY-NADKTYFVLGGSSNANNTVTS--ALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp TBTHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHH--HHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEECCchHHHHHHHHH--HhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 4455667777788888 789999999998876666543 445666666677777776543 333333322111000 01
Q ss_pred CCCCCCCCCceeecc--CCCHHHHHHHHhc------CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 215 PGVPKGATYETLTAP--FNDVSALENLFEN------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~--~~d~~~le~~l~~------~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
.+. ..... --+.+.+++.+.+ ...++..+++...++..|.+.+ +++|.++|++||++|++|
T Consensus 141 ~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD 209 (462)
T d1c4ka2 141 YGF-------IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFD 209 (462)
T ss_dssp TCC-------EEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEE
T ss_pred ccc-------cCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEe
Confidence 111 00000 0023333333221 1123445555666677899999 999999999999999999
Q ss_pred cccc-Ccccccc--chhhccC----C--CCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCC-------CccccCCCC
Q 011856 287 EVMT-GFRLAYG--GAQEYFG----V--TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG-------PMYQAGTLS 348 (476)
Q Consensus 287 Ev~~-g~r~g~~--~~~~~~g----~--~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~-------~~~~~~t~~ 348 (476)
|+|. |+..... ......+ . ..|++ ++.|.+++.-..+.+..+.+.+....... ......+.+
T Consensus 210 ~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~s 289 (462)
T d1c4ka2 210 SAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTS 289 (462)
T ss_dssp CTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSS
T ss_pred chhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCC
Confidence 9994 3322111 1111111 1 23666 57799985322344444443332111000 011233446
Q ss_pred CcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC--CceEeee------------------------
Q 011856 349 GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG--HAICGGY------------------------ 399 (476)
Q Consensus 349 ~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~v~~------------------------ 399 (476)
++...++...++...+.. +++.++..++.++++++++++...+. ....+.+
T Consensus 290 p~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (462)
T d1c4ka2 290 PFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGA 369 (462)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTC
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcc
Confidence 666666666666665543 56677888888999999887642210 0000000
Q ss_pred ----------eceeE---EEEEecCCCcCchhhcccc-hHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHH
Q 011856 400 ----------ISGMF---GFFFTEGPVYNFEDAKKSE-TTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHT 463 (476)
Q Consensus 400 ----------~g~~~---~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~ 463 (476)
...++ .+.+...... ........ ......+.+.|.++||.+...+...+++ +..+|++|+|++
T Consensus 370 ~~~~~~~~~~~~~~~Dp~k~~l~~~gi~-~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~l 448 (462)
T d1c4ka2 370 KWHAYEGYGDNQYYVDPNKFMLTTPGIN-PETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNL 448 (462)
T ss_dssp TTTCCTTCCTTCEEECTTEEEEECSSEE-TTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHH
T ss_pred hhccccccCccceecccceeEEecCCcc-ccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHH
Confidence 00000 0111100000 00000000 0013466778889999876655555655 577899999999
Q ss_pred HHHHHHHHHH
Q 011856 464 ITAAEKVKMR 473 (476)
Q Consensus 464 ~~~l~~~~~~ 473 (476)
+++|+++.+.
T Consensus 449 i~aL~ei~r~ 458 (462)
T d1c4ka2 449 ITQLLQLQRL 458 (462)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=2.5e-14 Score=139.36 Aligned_cols=278 Identities=10% Similarity=0.069 Sum_probs=166.1
Q ss_pred CCCeEEEeCCHHHHHHHHHHHH-HhccCCceEEEEeCCCCCCchhHHh-hcCCCCccCCC-CCCCCCCCCCCCceeeccC
Q 011856 154 SIEMVRFVNSGTEACMGVLRLA-RAFTGRERIIKFEGCYHGHADPFLV-KAGSGVATLGL-PDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (476)
..+.++|+.|||++++.+++.. ....+++++++.....++....... ..+........ +....
T Consensus 56 ~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 121 (382)
T d2bkwa1 56 KSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGES-------------- 121 (382)
T ss_dssp TCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSC--------------
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccccCCCCc--------------
Confidence 3567999999999999999843 1224567888887766664433322 22322211110 11111
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCccccc-cchhhccCCCC
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRLAY-GGAQEYFGVTP 307 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~r~g~-~~~~~~~g~~p 307 (476)
.+.+.+++.+.+. +++.+++..+.+++|...+ ++.+.++|++++ +++++|-+++ + |. ..-.+.+ ..
T Consensus 122 ~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~--g~~pid~~~~--gi 190 (382)
T d2bkwa1 122 VPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-I--GCEEFEFDEW--GV 190 (382)
T ss_dssp CCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-T--TTSCCCTTTT--TC
T ss_pred cchhHHHHHhhhc--cchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-c--cccccccccc--Ce
Confidence 1678888777653 5677888888888999999 899999998875 9999999995 1 11 1111222 35
Q ss_pred chhhhh--hhcCCCCcEEEEEecHHHHHhhcCCC------Cc-----------------cccCCCCCcHHHHHHHHHHHH
Q 011856 308 DLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAG------PM-----------------YQAGTLSGNPLAMTAGIHTLK 362 (476)
Q Consensus 308 Di~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~------~~-----------------~~~~t~~~~~~~~aaa~aal~ 362 (476)
|++++| |.+++..-+|++..++++++.+.+.. .. .....+..+.....+..++|+
T Consensus 191 D~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~ 270 (382)
T d2bkwa1 191 DFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK 270 (382)
T ss_dssp SEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHH
Confidence 777654 99964445899999999887664310 00 001122445566777778888
Q ss_pred HhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCc---eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 363 RLKEP---GTYEYLNKITGELTQGIIDAGKKAGHA---ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 363 ~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
.+.++ ...++.+++.+++++++.+........ ...+ ...+..+.+ ++. .++.+.|.+
T Consensus 271 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~-s~~v~~~~~-------------~~~---~~~~~~L~~ 333 (382)
T d2bkwa1 271 EILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMS-AHGLTAVYV-------------ADP---PDVIAFLKS 333 (382)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTB-CSSCEEEEC-------------SCH---HHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhcc-CCcEEEEcC-------------CCH---HHHHHHHHH
Confidence 77653 334455556666666665432111110 0011 112223332 222 456778889
Q ss_pred CCeEeccCCC-----cceEEe---CCCcHHHHHHHHHHHHHHHHH
Q 011856 437 EGVYFAPSQF-----EAGFTS---LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 437 ~Gv~~~~~~~-----~~~~~~---~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+||.+..+.. ..+|++ ...++++++.+++.|+.+...
T Consensus 334 ~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~ 378 (382)
T d2bkwa1 334 HGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 378 (382)
T ss_dssp TTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred CCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999987632 236775 344678888888888755443
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=1.1e-12 Score=130.54 Aligned_cols=301 Identities=12% Similarity=0.001 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHHHhcc----------------CCceEEEEeCCC
Q 011856 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGCY 191 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------e~v~~~~sGseA~~~al~~ar~~~----------------~~~~ii~~~~~y 191 (476)
.+.+.++.+++++.++-+ ..-++++|||+||..++..||... .++-+++....-
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 467788889999987422 246899999999999999987531 023466666667
Q ss_pred CCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
|-+..-++...|.++..++......+ |+++|++.+++ .+..+.+|+..-...+.|.+.|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~m--------------d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---- 253 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAM--------------RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---- 253 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCc--------------CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----
Confidence 77777777777766544322111111 89999999975 2233556666666667899999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH-HH-HhhcCCCCc-
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGPM- 341 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~-i~-~~l~~~~~~- 341 (476)
+++|.++|++||++|++|-+|.|+ ...........|+ ..|.++ .-|.++.-+..|+++.++. .. ..+......
T Consensus 254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------
T ss_pred HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhh
Confidence 999999999999999999999887 3322111112233 246665 4698887677888877653 22 222110000
Q ss_pred -------------ccc---CCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEeeeec
Q 011856 342 -------------YQA---GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYIS 401 (476)
Q Consensus 342 -------------~~~---~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g 401 (476)
... .+-....+. ...+++.+.. .+..++..++.+++.+.|++. +.. .-.+..-
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~---lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~----~~fel~~~p~l 406 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLK---MWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTL 406 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCS
T ss_pred ccccccccccccccccccccchhhHHHH---HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCce
Confidence 000 111112232 2334444333 455666667777777777654 211 1111222
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC-eEeccC---CCcceEEe---CCCcHHHHHHHHHHHHHHHHHh
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~~~~~---~~~~~~~~---~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++.|.+. +......++.+.+.+.| +++.+. +...+|++ ...|++||+.+++.|++..+++
T Consensus 407 ~iV~Fr~~------------~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 407 GLVCFRLK------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp SEEEEEES------------SCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcc------------CChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 23333332 12233356777888777 445443 22245653 4568999999999999998887
Q ss_pred h
Q 011856 475 L 475 (476)
Q Consensus 475 ~ 475 (476)
+
T Consensus 475 l 475 (476)
T d1js3a_ 475 L 475 (476)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.56 E-value=8.8e-14 Score=134.99 Aligned_cols=311 Identities=15% Similarity=0.098 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 011856 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (476)
+++|++|+.... ..+.+ ...+...+..+.+++++. +...|+|+.|||++++.++.. ....++++++....+++
T Consensus 30 ~~~Vl~am~~~~--~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~--~~~~~~~~~~~~~~~~~ 105 (377)
T d1vjoa_ 30 HPSVLQAMNVSP--VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN--AVEPGDVVLIGVAGYFG 105 (377)
T ss_dssp CHHHHHHHSSCC--CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH--HCCTTCEEEEEESSHHH
T ss_pred CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh--ccccccccceeeechhh
Confidence 677776653210 11111 123555677777777764 445788889999999999984 33456666666665544
Q ss_pred CchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC---CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
............... ....+.+ +.+..+...... .+..+.+..+.+.+|.+.| ++
T Consensus 106 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----i~ 163 (377)
T d1vjoa_ 106 NRLVDMAGRYGADVR----------------TISKPWGEVFSLEELRTALETH--RPAILALVHAETSTGARQP----LE 163 (377)
T ss_dssp HHHHHHHHHTTCEEE----------------EEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hhhhhhhhhhccccc----------------ccccCCCCcccchhhhhhhhcC--cceeeeeeeeeccceeeec----hh
Confidence 322222222211100 1111111 344444444432 5667777777788999999 88
Q ss_pred HHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHHHHhhcCCCCc------
Q 011856 271 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGPM------ 341 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i~~~l~~~~~~------ 341 (476)
+|.++|+++|+++++|.+|+ |. ...-.+. ...|++++ .|.++++--+|.+..+++.++........
T Consensus 164 ~i~~~~~~~g~~~~vDa~~~~g~---~~~~~~~--~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (377)
T d1vjoa_ 164 GVGELCREFGTLLLVDTVTSLGG---VPIFLDA--WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 238 (377)
T ss_dssp THHHHHHHHTCEEEEECTTTTTT---SCCCTTT--TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred hhhhhhhhccceEEEecchhhhh---hhhcccc--cccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceee
Confidence 89999999999999999995 21 0111222 34466544 46676544577888888887765432110
Q ss_pred -----------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 342 -----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 342 -----------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
........+...+.+..++++.+.. +...++.+++..++++.|.+...........+ ...++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~r-s~~v~~~~ 317 (377)
T d1vjoa_ 239 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYR-LPTLTTVC 317 (377)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGB-CSSEEEEE
T ss_pred ccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhc-CCeEEEEE
Confidence 0011112233344444455444433 45556666667777777766432221111111 22233444
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeC---CCcHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~---~~t~e~i~~~~~~l~~~~~ 472 (476)
+.+ .....++...|+ ++||.+..+. ...+|++. ..|+||||+++++|+++++
T Consensus 318 ~p~-------------~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 318 IPD-------------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CCT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCC-------------CCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 422 112356777775 5599886643 23478863 4589999999999998874
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.55 E-value=3.1e-13 Score=129.87 Aligned_cols=215 Identities=18% Similarity=0.149 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|+++++++. +.+.++.++||..|+..++.. ....++.|+..+..|.+....+..... ..+
T Consensus 65 ~nPt~~~LE~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~t~~l~~~~~~----------~~g 131 (398)
T d1qgna_ 65 GNPTTVVLEEKISALE-GAESTLLMASGMCASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETILP----------KMG 131 (398)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHH--HSCSSCEEEEETTSCHHHHHHHHHTGG----------GGT
T ss_pred CChHHHHHHHHHHHHh-CCceEEEecCcchHHHHHHhh--cccccccccccccccchhhhhhccccc----------ccc
Confidence 4677788889998887 668899999999999999883 245577788877778764333221110 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
..+..+...+.+..++.+.. +++++|++|.+-|+...+.+ +++|.++|+++|+++|+|.+...
T Consensus 132 ------i~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at----- 194 (398)
T d1qgna_ 132 ------ITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT----- 194 (398)
T ss_dssp ------CEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-----
T ss_pred ------cccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeec-----
Confidence 12344444455555544432 37899999999999988888 99999999999999999999842
Q ss_pred cchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
...+..+..-.||+ +++|.++| + .-.|.+++++++++.++. .........+|..+...+..|+-+ +-.+++
T Consensus 195 P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~---~~~~~G~~l~p~~a~ll~rgl~TL--~lRm~~ 269 (398)
T d1qgna_ 195 PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN---LHHILGGALNPNAAYLIIRGMKTL--HLRVQQ 269 (398)
T ss_dssp TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh---hcccCCCcCCHHHHHHHHhcchHH--HHHHHH
Confidence 12222333345766 68999986 3 567888889888777652 111111245677666655554422 344566
Q ss_pred HHHHHHHHHHHHHH
Q 011856 373 LNKITGELTQGIID 386 (476)
Q Consensus 373 ~~~~~~~l~~~L~~ 386 (476)
..++...+.+.|++
T Consensus 270 ~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 270 QNSTALRMAEILEA 283 (398)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777777765
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.55 E-value=2.8e-13 Score=129.92 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|++.++++. +.+..++++||..|+..++.. ....+++||+.+..|.+....+-.... ..|
T Consensus 61 ~nPT~~~LE~~la~LE-gg~~a~~~sSGmaAi~~~l~~--ll~~Gd~vi~~~~~Yg~t~~~~~~~l~----------~~G 127 (397)
T d1y4ia1 61 GNPTTDALEKKLAVLE-RGEAGLATASGISAITTTLLT--LCQQGDHIVSASAIYGCTHAFLSHSMP----------KFG 127 (397)
T ss_dssp SCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSSCHHHHHHHHTHHH----------HTT
T ss_pred CCHHHHHHHHHHHHHh-CCccceeehHHHHHHHHHHhh--ccCCCCeeeeecccccccchhhhcccC----------CCc
Confidence 4677788999998887 667889999999999998873 345677888888888774433321110 012
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
+ ++..+...|.+.+++.++. ++++|++|.+-|+...+.. +++|.++|+++|+++|+|.+...
T Consensus 128 i------~~~~vd~~d~~~~~~~i~~---~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at----- 189 (397)
T d1y4ia1 128 I------NVRFVDAGKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS----- 189 (397)
T ss_dssp C------EEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-----
T ss_pred e------EeeccCCCCHHHHHHhcCC---CCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC-----
Confidence 1 3556667789999999863 7999999999888888888 99999999999999999998842
Q ss_pred cchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
...+..+..-.||+ +++|.++| + .-.|+++++++.+...+-. ..........+|..+..++..|+-+ +-.+++
T Consensus 190 P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-~~~~~~G~~l~p~~a~l~~rgl~TL--~lRm~~ 266 (397)
T d1y4ia1 190 PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-GLKDITGGCMSPFNAWLTLRGVKTL--GIRMER 266 (397)
T ss_dssp TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-HHHHTTCCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH-HHHhCcCCcCCHHHHHHHHcCcCcH--HHHHHH
Confidence 12222233335766 68899996 3 5678889998876654310 1111111245677776666555433 334556
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEe
Q 011856 373 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFT 409 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~ 409 (476)
..++...+.+.|++. +.+.. ..+.|.|+.|++.
T Consensus 267 ~~~nA~~lA~~L~~h----p~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~ 317 (397)
T d1y4ia1 267 HCENALKIARFLEGH----PSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA 317 (397)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHhC----CCcCeEeCCCCCCCccccccccccCCCCeEEEEEec
Confidence 667777777777653 32221 2346888888875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.55 E-value=1.5e-12 Score=126.15 Aligned_cols=319 Identities=15% Similarity=0.050 Sum_probs=179.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh
Q 011856 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200 (476)
Q Consensus 121 ~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~ 200 (476)
++++.+.++++... ..-+...+|.+.+++++ +.+.+++++|||.|++.|++.. ...++++||+..-+|....... .
T Consensus 4 ~~~~~~~l~~~~~~-~~G~~~~~fE~~~~~~~-~~~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~~-~ 79 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA-PLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAPI-C 79 (374)
T ss_dssp HHHHHHHHHHTTTS-CTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHHH-H
T ss_pred HHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHHH-h
Confidence 46788888876321 12344566777777777 7789999999999999999843 3556778888776665543333 3
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 201 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
..|..+...+..... .......+........++.+|++....+ .... +++|.++|+++|
T Consensus 80 ~~g~~pv~~Di~~~~--------------~~~~~~~~~~~~~~~~~~~aii~~~~~G---~~~d----~~~i~~~~~~~~ 138 (374)
T d1o69a_ 80 YLKAKPVFIDCDETY--------------NIDVDLLKLAIKECEKKPKALILTHLYG---NAAK----MDEIVEICKEND 138 (374)
T ss_dssp HTTCEEEEECBCTTS--------------SBCHHHHHHHHHHCSSCCCEEEEECGGG---CCCC----HHHHHHHHHHTT
T ss_pred hccceeEeccccccc--------------ccccccccccchhccccccccccccccc---chhh----hHHHHHHhhccC
Confidence 334322211110000 0122333332222233567777766654 3445 899999999999
Q ss_pred CEEEEecccc-Cc-cccccchhhccCCCCchhhh----hhhcCCCCcEEEEEe-cHHHHHhhcC---CCC-----c---c
Q 011856 281 ALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP-----M---Y 342 (476)
Q Consensus 281 ~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~----sK~lg~G~~iG~~~~-~~~i~~~l~~---~~~-----~---~ 342 (476)
++||.|-+|+ |. ..|. ..|-.-|+.++ +|.++.|= .|++++ ++++++.++. .+. . .
T Consensus 139 i~vIED~a~a~g~~~~~~-----~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (374)
T d1o69a_ 139 IVLIEDAAEALGSFYKNK-----ALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLD 212 (374)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSS
T ss_pred cchhhhhhhhhcceECCe-----ecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhcccccccccccccccccc
Confidence 9999999995 22 2221 22333466654 38887432 456654 5677665531 111 0 1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC--CcCc----
Q 011856 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP--VYNF---- 416 (476)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~--~~~~---- 416 (476)
.+..+-.+.+.++.++..|+.+ ++..++-+++.+++.+.|.+.......+........+..+.+..+. ...+
T Consensus 213 ~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 290 (374)
T d1o69a_ 213 YGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDI 290 (374)
T ss_dssp CCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred CCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccccc
Confidence 1234456788888888777644 4556666667777777776542111111111111112222221110 0000
Q ss_pred --hhhcccchHHHHHHHHHHHHCCeEeccCCCc------------------------ceEEe--CCCcHHHHHHHHHHHH
Q 011856 417 --EDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 417 --~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------------------------~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
.............+.+.|.++||-+++...+ .+++| ...|++|++..++.|.
T Consensus 291 ~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~ 370 (374)
T d1o69a_ 291 NISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 370 (374)
T ss_dssp ECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHH
Confidence 0000112234567899999999977653211 13444 3559999999999999
Q ss_pred HHHH
Q 011856 469 KVKM 472 (476)
Q Consensus 469 ~~~~ 472 (476)
++++
T Consensus 371 ~~lk 374 (374)
T d1o69a_ 371 KSIK 374 (374)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8763
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=5.3e-13 Score=127.73 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=152.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|.+.|+++- +.+.++.++||..|+..++.. ....++.|+..+..|.+........... .+
T Consensus 48 ~nPt~~~le~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~gd~vv~~~~~yg~t~~~~~~~~~~----------~g 114 (384)
T d1cs1a_ 48 GNPTRDVVQRALAELE-GGAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKR----------GC 114 (384)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHHHTT----------TS
T ss_pred CCHHHHHHHHHHHHHh-CCCceEEecChHHHHHHHHhh--cccccceecccccccchhhhhhhhhhcc----------cc
Confidence 4666778888888877 668899999999999999873 2345566666666665533322221111 11
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g 295 (476)
..+..+...|.+.+++.+.. ++++|++|.+-|+...+.+ +++|.++|+++|+++|+|.+. +.+
T Consensus 115 ------~~~~~~d~~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP~--- 178 (384)
T d1cs1a_ 115 ------YRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPA--- 178 (384)
T ss_dssp ------CEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT---
T ss_pred ------cccccccCCCHHHHHhhccc---cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCcc---
Confidence 13455566689999999874 6889999999999988988 999999999999999999998 433
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
.+..+..-.||+ +++|.++| | .-.|+++++ +++.+.+... .. ..+ ...+|..+...+..|+-+ .-.+
T Consensus 179 ---~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~-~~-~~G-~~~~p~~a~ll~rgL~TL--~lRm 250 (384)
T d1cs1a_ 179 ---LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW-AN-NIG-VTGGAFDSYLLLRGLRTL--VPRM 250 (384)
T ss_dssp ---TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH-HH-HHT-CBCCHHHHHHHHHHHTTH--HHHH
T ss_pred ---cccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhh-hh-hhh-hccccccHHHHhhccchh--HHHH
Confidence 122222335766 68999996 4 557777774 4555554311 01 111 245677666655555422 3345
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEec
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 410 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~ 410 (476)
++..++...+.+.|++ ++.+.. ..+.|.++.+++..
T Consensus 251 ~~~~~nA~~lA~~L~~----hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~ 304 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQT----QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 304 (384)
T ss_dssp HHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS
T ss_pred HHHHHHHHHHHHhccc----CCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc
Confidence 5666666666666654 332222 33568888888753
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.53 E-value=3.6e-13 Score=128.86 Aligned_cols=213 Identities=14% Similarity=0.169 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|+++|+++- +.+.++.++||..|+.+++. ....+++|+..+..|-+ +...+...- +
T Consensus 47 ~nPt~~~le~~la~LE-~~~~a~~fsSGMaAisall~---ll~~Gd~vv~~~~~Yg~-t~~l~~~~~--------~---- 109 (380)
T d1ibja_ 47 GNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGG-SDRLLSQVV--------P---- 109 (380)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHH-HHHHHHHTS--------G----
T ss_pred CChHHHHHHHHHHHHc-CCceEEehhhHHHHHHHHHH---hhCCCCEEEEEeccccc-ccchhhhhh--------c----
Confidence 4566678888888776 56889999999999864332 44566777777666654 444332211 0
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (476)
..+..+..+..+|.+.+++.++. ++++|++|.+.|+...+.+ +++|+++|+++|+++|+|.+..+
T Consensus 110 ---~~gi~~~~~d~~~~~~~~~ai~~---~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at----- 174 (380)
T d1ibja_ 110 ---RSGVVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----- 174 (380)
T ss_dssp ---GGTCEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-----
T ss_pred ---cccccccccCcchHHHHHHHhcc---CccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccc-----
Confidence 01123555666789999988863 7999999999999999998 99999999999999999999842
Q ss_pred cchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 297 ~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
...+..+....|++ +++|.++| | .-.|+++.+ +++.+.+.... ...+ -..+|..+...+..|+-+ +-..+
T Consensus 175 P~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~--~~~G-~~l~p~~a~ll~rgl~Tl--~lRm~ 249 (380)
T d1ibja_ 175 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ--NSEG-SGLAPFDCWLCLRGIKTM--ALRIE 249 (380)
T ss_dssp TTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH--HHTT-CBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred cccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhc--cccC-CcCCHHHHHHHHhcchhh--hhhHH
Confidence 11222233345766 68999996 3 456776655 55666554210 1111 134677666665555432 34556
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIID 386 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (476)
+..++...+.+.|++
T Consensus 250 ~~~~nA~~lA~~L~~ 264 (380)
T d1ibja_ 250 KQQENARKIAMYLSS 264 (380)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666777777777764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.49 E-value=1.2e-12 Score=127.33 Aligned_cols=297 Identities=12% Similarity=0.061 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCC
Q 011856 139 LLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSP 215 (476)
Q Consensus 139 ~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~ 215 (476)
+...+..+.|++++. +.+.++|+.|||+++++++... ..+++++++.....++........ .+........+...
T Consensus 50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l--~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
T d2ch1a1 50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR 127 (388)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh--ccccccccccccccccccchhhhhhhccccccccccccc
Confidence 444566666666664 3445677889999999999852 345566666655544433222221 12211111111111
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
. .+.+..++..... .++++.+..+.+.+|.+.+ ++++.++|+++|+++++|-+++-. +
T Consensus 128 ~--------------~~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss~g--~ 185 (388)
T d2ch1a1 128 P--------------FSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVASLC--G 185 (388)
T ss_dssp C--------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTTBT--T
T ss_pred c--------------cchhhhhhhhccC--Ccceeeeeecccccccccc----hhhhcchhccccceeeeeeeeccc--c
Confidence 1 1566666665543 5677888888888999999 788999999999999999999511 0
Q ss_pred ccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHHHHHhhcCCCCc-------------------cc-cCCCCCcHHH
Q 011856 296 YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM-------------------YQ-AGTLSGNPLA 353 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~~~~~-------------------~~-~~t~~~~~~~ 353 (476)
... +.-....|++++| |++++.--+|.+..+++..+........ .. ......+...
T Consensus 186 ~pi--d~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 263 (388)
T d2ch1a1 186 VPF--YMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNL 263 (388)
T ss_dssp BCC--CTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHH
T ss_pred ccc--chhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHH
Confidence 111 1122345777666 6666433478888888877654421100 00 1122334555
Q ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (476)
..+..++++.+..... ..+.++.....+..+..................++.+.+.+ .....++
T Consensus 264 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~-------------g~~~~~l 330 (388)
T d2ch1a1 264 IFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPK-------------GVDWWKV 330 (388)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCT-------------TCCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCC-------------CCCHHHH
Confidence 5666666665544332 22233333333333333221111111111122344454432 1123567
Q ss_pred HHHHHHC-CeEeccCC----CcceEEe-C--CCcHHHHHHHHHHHHHHHHHh
Q 011856 431 YRGMLEE-GVYFAPSQ----FEAGFTS-L--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 431 ~~~l~~~-Gv~~~~~~----~~~~~~~-~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
...|+++ ||.+.++. ...+|++ + ..|+|||+.++++|+++++++
T Consensus 331 ~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 331 SQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp HHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 7777654 99888753 2246886 4 458999999999999999875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=1.4e-12 Score=126.25 Aligned_cols=306 Identities=14% Similarity=0.096 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccC-CceEEEEeCCCCCCch
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHAD 196 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~ 196 (476)
++-.+++.+.++.+... ..+...++.+++++++ +.+.+++++|||.|+..+++......+ ++.||+..-+|.. +.
T Consensus 12 ~~~~~~v~~~l~~~~~~--~G~~v~~fE~~~~~~~-g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a-~~ 87 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT--QGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA-TA 87 (371)
T ss_dssp HHHHHHHHHHHTSSCCS--SSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH-HH
T ss_pred HHHHHHHHHHHcCCCcc--CCHHHHHHHHHHHHHH-CcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccc-cc
Confidence 55677899998775422 3455677778888777 778999999999999999995322223 3467776555554 33
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
.++...|..+...+..... +.+.+++++.+. +++.+|++-... |...+ +++|.++|
T Consensus 88 ~ai~~~G~~pv~vDi~~~~--------------~~~~~~~~~~~~---~~t~avi~vh~~---G~~~~----~~~i~~~~ 143 (371)
T d2fnua1 88 NMLLESGYTPVFAGIKNDG--------------NIDELALEKLIN---ERTKAIVSVDYA---GKSVE----VESVQKLC 143 (371)
T ss_dssp HHHHHTTCEEEECCBCTTS--------------SBCGGGSGGGCC---TTEEEEEEECGG---GCCCC----HHHHHHHH
T ss_pred eeeeccCcccccccccccc--------------cccchhhhhhcc---chhhcccccccc---ccccc----cccccccc
Confidence 4444455433221111100 113345555554 368888877665 44556 89999999
Q ss_pred HHhCCEEEEecccc-CccccccchhhccCCCCchhhh----hhhcCCCCcEEEEEec-HHHHHhhcC---CCCc------
Q 011856 277 KENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTL----GKIIGGGLPVGAYGGR-RDIMEMVAP---AGPM------ 341 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~----sK~lg~G~~iG~~~~~-~~i~~~l~~---~~~~------ 341 (476)
+++|++||.|.+|+ |... .-...|-.-|+.++ .|.+++|= .|+++++ +++.+.++. .+..
T Consensus 144 ~~~~i~lIEDaaqa~Ga~~----~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~ 218 (371)
T d2fnua1 144 KKHSLSFLSDSSHALGSEY----QNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFE 218 (371)
T ss_dssp HHHTCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred cccchhhccchhhccCcee----ccccCCcccccccccccccccccccc-ceEEEeechhhhhhcccccccccccccccc
Confidence 99999999999995 2211 11122333455443 48888543 5677664 566665542 1110
Q ss_pred ----cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE------eeeeceeEEEEEecC
Q 011856 342 ----YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC------GGYISGMFGFFFTEG 411 (476)
Q Consensus 342 ----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------v~~~g~~~~i~~~~~ 411 (476)
..+..+..+.+.++.++..|+.+ ++..++-+++..++.+.|.+. +.... .......+.+.+...
T Consensus 219 ~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~ 292 (371)
T d2fnua1 219 GEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQK 292 (371)
T ss_dssp EEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhccccccc----cccccccccccccccccccccccccc
Confidence 11334456778777777776544 445555555666665555542 21111 111222233333221
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEe--CCCcHHHHHHHH
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTI 464 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~--~~~t~e~i~~~~ 464 (476)
......++.+.|.++||-+++...+ .+.++ ...|++|++..+
T Consensus 293 -----------~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~ 361 (371)
T d2fnua1 293 -----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA 361 (371)
T ss_dssp -----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHH
Confidence 1112357889999999987643211 12444 345999999999
Q ss_pred HHHHHHHHH
Q 011856 465 TAAEKVKMR 473 (476)
Q Consensus 465 ~~l~~~~~~ 473 (476)
+.+.+.++.
T Consensus 362 ~~i~~~~~~ 370 (371)
T d2fnua1 362 HSVLKTFES 370 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.2e-12 Score=125.71 Aligned_cols=287 Identities=10% Similarity=0.039 Sum_probs=177.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|.+.++++- +.+.++.++||..|+..++.. ....++.||.....|-+ +...+...- + ..|
T Consensus 56 ~nPt~~~le~~la~LE-g~~~a~~~~SGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~-T~~l~~~~l--------~-~~G 122 (391)
T d1cl1a_ 56 GTLTHFSLQQAMCELE-GGAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEP-SQDFCSKIL--------S-KLG 122 (391)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTSCHH-HHHHHHHTG--------G-GGT
T ss_pred CChhHHHHHHHHHHHh-CCccEEEeccccceeeehhhc--ccCCCCeEEEecccccc-hhhhhhhcc--------c-ccc
Confidence 5777888999998887 678899999999999999873 23456677766655544 444432210 0 011
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRL 294 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r~ 294 (476)
..+..+...|.+++++.++ +++++|++|.+.|+...+.+ +++|+++|+++ |+++|+|......
T Consensus 123 ------i~~~~~d~~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~atP-- 187 (391)
T d1cl1a_ 123 ------VTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG-- 187 (391)
T ss_dssp ------CEEEEECTTCGGGGGGTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT--
T ss_pred ------cccccccCccccccccccc---cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccch--
Confidence 1345555567788877765 37999999999888888888 99999999875 9999999999421
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
..+..+..-.|++ +++|.++| | .-.|.+++++++.+.+.... ...+. ..+|..+...+..|+-+ .-..
T Consensus 188 ---~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~-~~~G~--~~~p~~a~ll~rgl~TL--~lR~ 259 (391)
T d1cl1a_ 188 ---VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA-YLMGQ--MVDADTAYITSRGLRTL--GVRL 259 (391)
T ss_dssp ---TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-HHTTC--CCCHHHHHHHHHHHTTH--HHHH
T ss_pred ---hhhcccccccceEEeecchhccccccccccceeccccccccchhhh-hcccc--cCCchhhhhhhccchhH--HHHH
Confidence 1222233334766 68899996 4 55777788888776654211 11122 34566655554444322 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceE------------------eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
++..++...+.+.|++ ++.+.. ..+.|.++.+.+.... +.+...+|.+
T Consensus 260 ~~~~~nA~~vA~~L~~----hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~----------~~e~~~~f~d 325 (391)
T d1cl1a_ 260 RQHHESSLKVAEWLAE----HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL----------NNEELANYLD 325 (391)
T ss_dssp HHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh----cccccccccccccchhhHHHHhhccCCCCcceeeeecCCC----------CHHHHHHHHH
Confidence 5666666667666654 333322 2355677788875321 1222233433
Q ss_pred HHH--HCCeEec--------c---------------CCCcceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 433 GML--EEGVYFA--------P---------------SQFEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 433 ~l~--~~Gv~~~--------~---------------~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.|. ..+.-+. + .....+|++... |+++.+++-|+++|++++
T Consensus 326 ~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 326 NFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL--EDVDDLIADLDAGFARIV 391 (391)
T ss_dssp TCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS--SCHHHHHHHHHHHHHHTC
T ss_pred cCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHhhC
Confidence 321 1111110 0 001235777666 678888999999988764
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.47 E-value=8.3e-13 Score=124.42 Aligned_cols=233 Identities=13% Similarity=0.064 Sum_probs=149.8
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCC
Q 011856 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 222 (476)
Q Consensus 143 ~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 222 (476)
+|.++++++. +.+.++.++||..|+..++.. ....+++||..+..|.|....+-.... ..|
T Consensus 2 aLE~~la~Le-g~~~a~~~sSGMaAi~~~l~~--ll~~Gd~iv~~~~~Yg~t~~~~~~~l~----------~~g------ 62 (331)
T d1pffa_ 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWT--FLKAGDHLISDDCLYGCTHALFEHQLR----------KFG------ 62 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESCCCHHHHHHHHTHHH----------HTT------
T ss_pred HHHHHHHHHh-CCCeEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH----------hcC------
Confidence 3555565555 678899999999999888863 244567888888888774432221100 011
Q ss_pred CceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCccccccchhh
Q 011856 223 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGFRLAYGGAQE 301 (476)
Q Consensus 223 ~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~r~g~~~~~~ 301 (476)
.++..++..|.+.+++.++. +++.|++|.+.|+...+.+ ++.+.+++ +++|+++|+|.+.... ..+.
T Consensus 63 i~~~~~d~~d~~~~~~~i~~---~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-----~~~~ 130 (331)
T d1pffa_ 63 VEVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-----ILTN 130 (331)
T ss_dssp CEEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-----HHCC
T ss_pred eEEEEecccchhhHhhhccc---ccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-----cccc
Confidence 24556666788888888863 7899999999888888888 88888885 6789999999988521 2222
Q ss_pred ccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 011856 302 YFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 377 (476)
Q Consensus 302 ~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 377 (476)
.+....|++ +++|.++| | .-.|+++++++.+...... ......-...+|..+...+..|+-+ +-..++..++.
T Consensus 131 pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-~~~~~~G~~l~p~~a~ll~rgl~Tl--~~Rm~~~~~nA 207 (331)
T d1pffa_ 131 PLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-GIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENA 207 (331)
T ss_dssp GGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ccccCCCEEEecchhhcCCCCccccccccccccchhhhhhh-hhhhccCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 233335776 68899986 4 5677888887765543311 1111111245677777777766654 34556677777
Q ss_pred HHHHHHHHHHhh--h--cC-Cc---------eEeeeeceeEEEEEe
Q 011856 378 GELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFT 409 (476)
Q Consensus 378 ~~l~~~L~~~~~--~--~~-~~---------~~v~~~g~~~~i~~~ 409 (476)
..+.+.|++... + || ++ ....+.|.++.+++.
T Consensus 208 ~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~ 253 (331)
T d1pffa_ 208 QKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD 253 (331)
T ss_dssp HHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred HHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec
Confidence 777777775421 0 11 00 113456888888874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.46 E-value=4e-12 Score=122.24 Aligned_cols=217 Identities=12% Similarity=0.049 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|++.|+++- +.+..+.++||..|+..++.. ....++.|+..+..|.+ +...+...-
T Consensus 57 ~nPT~~~le~~la~LE-g~~~a~~~sSGmaAi~~~~l~--l~~~gd~vv~~~~~yg~-t~~~~~~~~------------- 119 (394)
T d1e5ea_ 57 GNPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLT--ILKAGDHLISDECLYGC-THALFEHAL------------- 119 (394)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESCCCHH-HHHHHHTHH-------------
T ss_pred CCHHHHHHHHHHHHHh-CCcceeeeccchHHHHHHHHh--hcccccccccccceeeh-hhHhHHHHh-------------
Confidence 4777888999998877 678899999999999988862 23345555555555544 433332110
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCcccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~g 295 (476)
......+..++..|.+++++.++. ++++|++|.+.|+...+.+ ++++.+++++ +|+++|+|.+...
T Consensus 120 --~~~gi~~~~~d~~d~~~~~~~i~~---~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~at---- 186 (394)
T d1e5ea_ 120 --TKFGIQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCS---- 186 (394)
T ss_dssp --HHTTCEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTC----
T ss_pred --hccceeeeccCCCCHHHHHHhhcc---cccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccC----
Confidence 001123566667788999999874 7899999999888888888 8888886664 7899999999842
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
...+..+..-.||+ +++|.++| + .-.|.++++++.+...+.. ......-...+|..+...+..|+-+ +-.++
T Consensus 187 -P~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~-~~~~~~G~~lsp~~a~ll~rgl~TL--~lRm~ 262 (394)
T d1e5ea_ 187 -PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV-GIKDITGSVISPHDAWLITRGLSTL--NIRMK 262 (394)
T ss_dssp -TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred -cccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH-HHHHhhCCCCChHHHHHHHhhchhH--HHHHH
Confidence 12222333344776 68999996 4 5678888888876654311 1111111234666666555555422 34556
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIIDA 387 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~ 387 (476)
+..++...+.+.|++.
T Consensus 263 r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 263 AESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6667777777777653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=5.7e-12 Score=120.39 Aligned_cols=311 Identities=19% Similarity=0.123 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCC
Q 011856 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (476)
+|+|++|+.+.. ..+.+ ...+...+..+.|.+.+. ..+-++|+.|||+++++++.. ...+++++++...+++|.
T Consensus 12 ~~~V~~am~~~~--~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~n--l~~~g~~vlv~~~G~f~~ 87 (348)
T d1iuga_ 12 HPKALEALARPQ--LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKN--LFAPGERVLVPVYGKFSE 87 (348)
T ss_dssp CHHHHHHHHSCC--CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHH--HCCTTCEEEEEECSHHHH
T ss_pred CHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHh--cccccccceeecchHHHH
Confidence 678877764321 11111 012344566666666665 346688899999999999984 244567788887776553
Q ss_pred chhHHh-hcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 011856 195 ADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (476)
Q Consensus 195 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (476)
...... ..+..+.. ...++.+...++. +.+ .++..|++..+.+.+|.+.| +++|.
T Consensus 88 ~~~~~a~~~~~~~~~-----------------~~~~~g~~~~~~~-~~~--~~~~~v~~~h~eTstG~~~~----i~~i~ 143 (348)
T d1iuga_ 88 RFYEIALEAGLVVER-----------------LDYPYGDTPRPED-VAK--EGYAGLLLVHSETSTGALAD----LPALA 143 (348)
T ss_dssp HHHHHHHHTTCEEEE-----------------EECCTTCCCCTTT-SCC--SSCSEEEEESEETTTTEECC----HHHHH
T ss_pred HHHHHHHhcCccccc-----------------ccccCCCcccccc-ccc--cCCCeeEEEecchhhhhhcc----HHHHH
Confidence 322222 22222221 1122211111111 111 25566777777677899999 99999
Q ss_pred HHHHHhC--CEEEEeccccCccccc-cchhhccCCCCchhh--hhhhcCCCCcEEEEEecHHHHHhhcCCCCcc------
Q 011856 274 RITKENG--ALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 342 (476)
Q Consensus 274 ~l~~~~g--~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~------ 342 (476)
++|++|+ .++++|-+++ + |. ....+.++ .|+++ -.|++++--.+|.++.+++.++.+.+...+.
T Consensus 144 ~~~~~~~~~~l~~vDavss-~--g~~~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~ 218 (348)
T d1iuga_ 144 RAFKEKNPEGLVGADMVTS-L--LVGEVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAREL 218 (348)
T ss_dssp HHHHHHCTTCEEEEECTTT-B--TTBCCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHH
T ss_pred HHHHhhhccceeechhhhc-c--ccccccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhh
Confidence 9999985 7899998885 1 11 12223333 46664 4499953223899999999988776422111
Q ss_pred ----ccC-CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCc
Q 011856 343 ----QAG-TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNF 416 (476)
Q Consensus 343 ----~~~-t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~ 416 (476)
... .++.+.....+..++|+.+.+. ..++. +..+...+.+.++....++...... ...+..+.+
T Consensus 219 ~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~-------- 288 (348)
T d1iuga_ 219 KAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL-------- 288 (348)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC--------
T ss_pred hhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC--------
Confidence 012 2334455666677888876542 33332 2223333334443333332211111 112333333
Q ss_pred hhhcccchHHHHHHHHHHHHCCeEeccCCC----cceEEe-C-CCcHHHHHHHHHHHHHHHHHhh
Q 011856 417 EDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTS-L-AHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~-~-~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
|+.....++.+.|.++|+.+.++.. ..+|+. + ..+++|++.++++|++++++++
T Consensus 289 -----P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~~ 348 (348)
T d1iuga_ 289 -----PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 348 (348)
T ss_dssp -----CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2222236788889999999887642 246884 3 5789999999999999999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.9e-12 Score=127.95 Aligned_cols=328 Identities=11% Similarity=-0.028 Sum_probs=189.5
Q ss_pred CcHHHHHHHHHHHHhcCC-C-CCC--CHHHHHHHHHHHhhCCCC------CeEEEeCCHHHHHHHHHHHHHhc-------
Q 011856 116 ADDQVLAALGETMKKGTS-F-GAP--CLLENVLAEMVISAVPSI------EMVRFVNSGTEACMGVLRLARAF------- 178 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-~-~~~--~~~~~~la~~l~~~~~~~------e~v~~~~sGseA~~~al~~ar~~------- 178 (476)
-+|++.+.+.+.+.+... . .+| .+.+.++.+++++++.-+ -.-.+|+|||||+..++..+|..
T Consensus 66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~ 145 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 145 (450)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence 468888888887766321 1 122 577888999999987511 12589999999999999988642
Q ss_pred ---cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 179 ---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 179 ---~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
.....+++ ....|.+..-++...|.+...++.....+. -|+++|++.+++ ++++|++.-.
T Consensus 146 ~g~~~~~~~~~-~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~-------------~d~~~L~~~i~~---~t~~Vv~t~g 208 (450)
T d1pmma_ 146 AGKPTDKPNLV-CGPVQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTFG 208 (450)
T ss_dssp HTCCCSCCEEE-ESSCCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBBS
T ss_pred cCCCCCCceEE-ecccHHHHHHHHHHcCCCceEeeecCCCCc-------------CcHHHHHHHhhh---CceEEEeeee
Confidence 12233444 445687766666666665443322111110 189999999875 6777777777
Q ss_pred CCCCCcccCCHHHHHHHHHHH------HHhCCEEEEeccccCc-c-ccccchhhccCC-CCchhhhh--hhcCCCCcEEE
Q 011856 256 VGNSGFIAPKPDFLNAIRRIT------KENGALLIFDEVMTGF-R-LAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGA 324 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~------~~~g~llI~DEv~~g~-r-~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~ 324 (476)
.+.+|.+.| +++|.++| +++|+++++|-++.|+ - .......-.+++ ..|.++++ |.+.+...+|+
T Consensus 209 tt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~ 284 (450)
T d1pmma_ 209 VTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 284 (450)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred eccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeE
Confidence 777899988 66666664 5689999999999775 1 100000001222 24666654 87666677999
Q ss_pred EEecHHH-HHhhcCCCCcc-----ccCC--CCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 325 YGGRRDI-MEMVAPAGPMY-----QAGT--LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 325 ~~~~~~i-~~~l~~~~~~~-----~~~t--~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
++.+++- ..........+ ...+ ++.+.....+..+++..+.. .+..++..++.++|.++|++... ..+
T Consensus 285 l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~-~el 363 (450)
T d1pmma_ 285 VIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGP-YEF 363 (450)
T ss_dssp EEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-EEE
T ss_pred EEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEE
Confidence 9886542 21111000000 0111 12222333334444544433 56667777778888777776421 111
Q ss_pred ceEeeee--ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC----C-C--cceEE--eCCCcHHHHHH
Q 011856 394 AICGGYI--SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-F--EAGFT--SLAHSSDDIQH 462 (476)
Q Consensus 394 ~~~v~~~--g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~-~--~~~~~--~~~~t~e~i~~ 462 (476)
....... -..+.|.+.+..... ....++.+.|.++|..+... . . ..+|+ .-..|++++|+
T Consensus 364 ~~~~~p~~~l~~V~Fr~~~~~~~~---------~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~ 434 (450)
T d1pmma_ 364 ICTGRPDEGIPAVCFKLKDGEDPG---------YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAEL 434 (450)
T ss_dssp EEECCTTTBSSEEEEEECTTCCCS---------SCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHH
T ss_pred EeCCCCCCceEEEEEecCCcccCC---------CCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHH
Confidence 1111111 123444443321111 11246788999999765321 1 1 12344 34569999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
+++.|+++++++
T Consensus 435 lv~dl~~~v~~l 446 (450)
T d1pmma_ 435 LLEDYKASLKYL 446 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=7.9e-12 Score=119.98 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++....|+++|+++. +.+.++.++||..|+..++. .+..+++||.....|.+....+..... ..+
T Consensus 53 gnPT~~~lE~~la~LE-~~~~a~~~sSGmaAi~~~l~---~l~~gd~iv~~~~~yg~t~~~~~~~l~----------~~g 118 (393)
T d1n8pa_ 53 QNPNRENLERAVAALE-NAQYGLAFSSGSATTATILQ---SLPQGSHAVSIGDVYGGTHRYFTKVAN----------AHG 118 (393)
T ss_dssp CCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHH---TSCSSCEEEEESSCCHHHHHHHHHTST----------TTC
T ss_pred CChHHHHHHHHHHHHh-CCceEEEecCchhHHHhhhh---cccCCCeeeeeeeecccchhhhhhhhh----------ccc
Confidence 4677788888888887 66888999999988866554 455678888888888774433322111 111
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCEEEEeccccCc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK----ENGALLIFDEVMTGF 292 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~ 292 (476)
+ ++..+. .+.++++++++. ++++|++|.+-|+...+.+ +++|.++|+ ++|+++|+|.....
T Consensus 119 i------~~~~~~-~~~~~~~~~i~~---~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~at- 183 (393)
T d1n8pa_ 119 V------ETSFTN-DLLNDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS- 183 (393)
T ss_dssp S------CCEEES-SHHHHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH-
T ss_pred c------eeEEee-cchHHHHHHhhh---hcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccC-
Confidence 1 233333 246788888763 7999999999988888888 999999999 67899999999842
Q ss_pred cccccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
...+..+..-.||+ +++|.++| | .-.|.++. ++++.+.++.. ....+. ..+|..+...+..|+-+ +
T Consensus 184 ----P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~--~~~~G~-~~~p~~a~ll~rgl~Tl--~ 254 (393)
T d1n8pa_ 184 ----PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL--QNAIGA-IPSPFDAWLTHRGLKTL--H 254 (393)
T ss_dssp ----HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH--HHHHCC-CCCHHHHHHHHHHHTTH--H
T ss_pred ----cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHH--HhhcCC-CCChHHHHHHHhCCcch--h
Confidence 12222233345766 68899986 4 66777765 45666666521 111222 45677666655555432 3
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 011856 368 GTYEYLNKITGELTQGIID 386 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~ 386 (476)
-..++..++...+.+.|+.
T Consensus 255 lR~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 255 LRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777753
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=7e-11 Score=113.90 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSP 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~ 215 (476)
.++....|+++|+++- +.+..+.++||..|+..++.. ....+++||+.+..|+|....+-.. ...
T Consensus 56 ~nPT~~~LE~~la~LE-~~~~a~~~~SGmaAi~~~~~~--l~~~gd~il~~~~~Yg~t~~l~~~~~~~~----------- 121 (421)
T d2ctza1 56 MNPTVDVLEKRLAALE-GGKAALATASGHAAQFLALTT--LAQAGDNIVSTPNLYGGTFNQFKVTLKRL----------- 121 (421)
T ss_dssp BCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEECSCCCHHHHHHHHTHHHHT-----------
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHh--hcccccceeecCCcCCchhHHHHHHHhhc-----------
Confidence 4677888999998887 668899999999999888873 3456778888888888743332211 111
Q ss_pred CCCCCCCCceeeccCCC-HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccc
Q 011856 216 GVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~ 294 (476)
++ .+..+...| .+..++.++ +++++|++|.+.|+...+.+ ++.|+++|+++|+++|+|.....
T Consensus 122 gi------~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~--- 185 (421)
T d2ctza1 122 GI------EVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM--- 185 (421)
T ss_dssp TC------EEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG---
T ss_pred cc------cceecccccCcchhccccC---CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc---
Confidence 11 233343333 445555554 37999999999999989988 99999999999999999998841
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRR 329 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~ 329 (476)
....+..+..-.||+ +++|.++| | .-.|.++.++
T Consensus 186 -tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 186 -GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp -GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred -cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 011222333345766 68999996 4 5567776554
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.21 E-value=3.8e-11 Score=115.40 Aligned_cols=314 Identities=11% Similarity=-0.028 Sum_probs=155.0
Q ss_pred CcHHHHHHHHHHHHhcC--CC-----CC----CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 116 ADDQVLAALGETMKKGT--SF-----GA----PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~--~~-----~~----~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
.+++|++||.+++.+.. .. +. ..+...+..+.|++++.. ...++|++|++++++.++... ...+++
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~-l~~~~~ 92 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN-FLKEGQ 92 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH-HCCTTC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-cccCCC
Confidence 36899999988765411 01 11 135667788888888863 236888887766665554422 233455
Q ss_pred eEEEEeCCCCCCchhHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 183 RIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
+++......++.....+ ...+..+.....+.... .+++.+++.++.. ... .++ +.+|.
T Consensus 93 ~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~--~v~---~~tg~ 151 (361)
T d2c0ra1 93 TANYVMTGSWASKALKEAKLIGDTHVAASSEASNY--------------MTLPKLQEIQLQD--NAA--YLH---LTSNE 151 (361)
T ss_dssp EEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT--------------CSCCCGGGCCCCT--TEE--EEE---EESEE
T ss_pred ceEEEeechhhhhhhhhhhhcCceeeeeccccccc--------------cchhhhhhhcccC--cce--EEE---Eeccc
Confidence 66665544333222222 22233221111111100 1344445444432 232 222 23456
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~ 341 (476)
+.+ ++++.++|+++|+++++|-+++--. ... +...+..|+.+.+|.++.+-..++++..+.+.+.-......
T Consensus 152 ~~~----~~~i~~~~~~~~al~~vDavss~g~--~~i--d~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (361)
T d2c0ra1 152 TIE----GAQFKAFPDTGSVPLIGDMSSDILS--RPF--DLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTM 223 (361)
T ss_dssp TTT----TEECSSCCCCTTSCEEEECTTTTTS--SCC--CGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGG
T ss_pred cee----cceEEEeeccCCceEEEEeeccccc--ccc--ccccceeEEEecccccccccCcEEEEEhHHhhhCccccccc
Confidence 666 5668899999999999999995111 111 22234457778889887321233334444332211110000
Q ss_pred --------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cce-----EeeeeceeEEEE
Q 011856 342 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI-----CGGYISGMFGFF 407 (476)
Q Consensus 342 --------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-----~v~~~g~~~~i~ 407 (476)
........++........++.............+..+..+..+........ ... ..++. ..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~-~~~~~- 301 (361)
T d2c0ra1 224 LRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD-MNITF- 301 (361)
T ss_dssp GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS-SEEEE-
T ss_pred cccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc-eEEEE-
Confidence 011111223333333333333222223222233333333333332222111 110 00111 11122
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..++.....++...|.++||.+..+.. ..+|++ ..+|.||++++++.|++..++
T Consensus 302 ------------~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 302 ------------RLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp ------------ECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------ECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 223445567889999999999887632 247885 455999999999999987653
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.17 E-value=1.1e-09 Score=103.28 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=175.5
Q ss_pred CcHHHHHHHHHHHHhcCC-------CCCCCHHH---HHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGTS-------FGAPCLLE---NVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-------~~~~~~~~---~~la-~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|.|.+++...+.+-.. |+.-.+.. +.++ ++..+.| +.+.+-+ ..||+.||.+++.. ...++++
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF-~a~~anVqp~SGs~An~av~~a--ll~pGD~ 111 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF-GAEHANVQPHSGAQANMAVYFT--VLEHGDT 111 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-CCSEEECCCSSHHHHHHHHHHH--HCCTTCE
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHh-CCCcceeeccCchHHHHHHHHH--hcCCCCE
Confidence 468888888777754111 11122222 2233 4444555 5555543 56899999999883 2345677
Q ss_pred EEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------CHHHHHHHHhcCCCCeEEEEEccc
Q 011856 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
|+..+-..-|+.... ....+. ..+.+.++++ |.+++++..+++ +.++||+-..
T Consensus 112 im~l~l~~GGHlshg~~~~~~g~-----------------~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G~S 172 (405)
T d1kl1a_ 112 VLGMNLSHGGHLTHGSPVNFSGV-----------------QYNFVAYGVDPETHVIDYDDVREKARLH--RPKLIVAAAS 172 (405)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHH-----------------HSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEECCS
T ss_pred EEEeecccccccccCccccccce-----------------EEEEEEeccchhcccccHHHHHHHHHhh--CcceEEeccc
Confidence 777754433332110 000000 0112222221 899999999876 5667777543
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDI 331 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~~i 331 (476)
.- -...+ +++++++|++.|++|++|=+| +|+ -.|. + ...+.. .|++|. -|+|.| -|.|.++.++++
T Consensus 173 ~y--~r~~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~-~-~~P~~~-aDvvt~tThKtlrG-Prgg~I~~~~~~ 242 (405)
T d1kl1a_ 173 AY--PRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGL-H-PNPVPY-AHFVTTTTHKTLRG-PRGGMILCQEQF 242 (405)
T ss_dssp SC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-S-CCSTTT-CSEEEEESSSTTCC-CSCEEEEECHHH
T ss_pred cc--ccccC----hHHHHHHHhhhCCEEecchhhHhhhhhhhh-c-CChhhh-hhheeccccccccC-CCCceEEecchh
Confidence 31 12234 899999999999999999999 677 3332 1 122322 488864 499874 478888999998
Q ss_pred HHhhcCC-CCccccCCCCCcHHHHHHHH-HHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee--eceeE
Q 011856 332 MEMVAPA-GPMYQAGTLSGNPLAMTAGI-HTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMF 404 (476)
Q Consensus 332 ~~~l~~~-~~~~~~~t~~~~~~~~aaa~-aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~ 404 (476)
.+.+... .+..++ ++-....|++ .++.. +.. .++.+++.++.+.|.+.|.+.+.+ +. .+ ...++
T Consensus 243 ~~~i~~avfPg~qg----gp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~--vv---~ggTd~H~v 313 (405)
T d1kl1a_ 243 AKQIDKAIFPGIQG----GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFT--LV---SGGTDNHLL 313 (405)
T ss_dssp HHHHHHHHTTTTCS----SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE--EG---GGSCSSSEE
T ss_pred HHHHHhhhCccccc----CcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCce--ee---cCCCcccee
Confidence 8877631 122222 2222222332 23333 322 567788888888888888875422 11 11 34466
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEe------CCCcHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTS------LAHSSDDIQHTITAAE 468 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~------~~~t~e~i~~~~~~l~ 468 (476)
.+++..... ...+..+.|.+.||.+.... ...+|+. -...++|+.++.+.|.
T Consensus 314 lvdl~~~~~------------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~ 381 (405)
T d1kl1a_ 314 LVDLRPQQL------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIG 381 (405)
T ss_dssp EEECGGGTC------------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred eccccccCC------------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHH
Confidence 666643111 11333445666799886321 1246772 4678899999999888
Q ss_pred HHHH
Q 011856 469 KVKM 472 (476)
Q Consensus 469 ~~~~ 472 (476)
++++
T Consensus 382 ~~l~ 385 (405)
T d1kl1a_ 382 LVLK 385 (405)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8874
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.1e-09 Score=101.90 Aligned_cols=306 Identities=15% Similarity=0.116 Sum_probs=173.8
Q ss_pred CcHHHHHHHHHHHHhcC-------CCCCCCH---HHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGT-------SFGAPCL---LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~-------~~~~~~~---~~~~la-~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|.|.+++...+.+-. .|+.-++ ..+.|+ ++..+++ +.+.+-+ ..||+.||.+++.. ...++++
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF-~a~~anVqp~SGs~AN~av~~A--ll~pGD~ 114 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELF-GADYANVQPHSGSQANFAVYTA--LLEPGDT 114 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHH--HCCTTCE
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHh-CCCcceeecccCccHHHHHHHH--hcCCCCe
Confidence 46888888877665411 1222222 223333 3344455 5555544 57999999999983 2345666
Q ss_pred EEEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeecc-----CCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 184 IIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAP-----FNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
|+..+...-|+..... ...+... +.+.++ .-|.+.+++..++. +.++|++-.
T Consensus 115 Il~l~l~~GGHlshg~~~~~~g~~~-----------------~~~~y~~d~~~~IDyd~l~~~a~~~--kPklIi~G~-- 173 (416)
T d1dfoa_ 115 VLGMNLAHGGHLTHGSPVNFSGKLY-----------------NIVPYGIDATGHIDYADLEKQAKEH--KPKMIIGGF-- 173 (416)
T ss_dssp EEEECTTTTCCGGGTCTTSHHHHHS-----------------EEEEECBCSSSSBCHHHHHHHHHHH--CCSEEEEEC--
T ss_pred eeeccccccccccccccccccCceE-----------------EEEecccCCccCccHHHHHHHHHHh--ccceEEecc--
Confidence 7666544333321110 0000000 011111 11899999988875 566677653
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEec---H
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR---R 329 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~---~ 329 (476)
+.-....+ +++++++|++.|++|++|-+| +|+ -.|.. ...+.. .|++| ..|+|.| -|.|.++.+ +
T Consensus 174 S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~~--~sP~~~-aDvvt~tThKtlrG-PrggiI~~~~~~~ 245 (416)
T d1dfoa_ 174 SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGVY--PNPVPH-AHVVTTTTHKTLAG-PRGGLILAKGGSE 245 (416)
T ss_dssp SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCCTTT-SSEEEEESSSTTCC-CSCEEEEESSCCH
T ss_pred cccccccC----HHHHHHHHHhcCceEEcchhhhhcceecccc--CCcccc-cceeeeehhhcccC-CCceEEEeccchH
Confidence 22334455 999999999999999999999 777 33321 122332 48774 6699984 467777765 5
Q ss_pred HHHHhhcCC-CCccccCCCCCcHHHHHHH-HHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeE
Q 011856 330 DIMEMVAPA-GPMYQAGTLSGNPLAMTAG-IHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (476)
Q Consensus 330 ~i~~~l~~~-~~~~~~~t~~~~~~~~aaa-~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (476)
++.+.+... .+..++ ++-....|+ ..++....+ .++.+++.++.+.|.+.|.+.+.+. .. -.....++
T Consensus 246 ~~~~~i~~avfPg~qg----gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~i--v~-ggTdnHlv 318 (416)
T d1dfoa_ 246 ELYKKLNSAVFPGGQG----GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKV--VS-GGTDNHLF 318 (416)
T ss_dssp HHHHHHHHHHTTTTCS----SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE--GG-GSCSSSEE
T ss_pred hHHHHHHhhhCccccc----CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCccc--cc-CCCCCcee
Confidence 666666521 122222 222222222 233444333 4677888889999988888764321 10 00123466
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEe------CCCcHHHHHHHHHHHH
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTS------LAHSSDDIQHTITAAE 468 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~------~~~t~e~i~~~~~~l~ 468 (476)
.+++.+... ...++.+.|.+.||.+.... ...+|+. -...++|++++.+.|.
T Consensus 319 lvdl~~~~~------------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~ 386 (416)
T d1dfoa_ 319 LVDLVDKNL------------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMC 386 (416)
T ss_dssp EEECGGGTC------------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEEecccCC------------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHH
Confidence 676643111 12345556667799875322 1246772 4578899999998888
Q ss_pred HHHH
Q 011856 469 KVKM 472 (476)
Q Consensus 469 ~~~~ 472 (476)
+++.
T Consensus 387 ~~l~ 390 (416)
T d1dfoa_ 387 DVLD 390 (416)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.10 E-value=7.9e-11 Score=112.97 Aligned_cols=314 Identities=11% Similarity=-0.015 Sum_probs=157.1
Q ss_pred CcHHHHHHHHHHHHhcC--CCC----CC-----CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 116 ADDQVLAALGETMKKGT--SFG----AP-----CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~--~~~----~~-----~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
.+++|.+++.+++-+.. ..+ .+ .+...+..+.+++++. +.+.++|++|++++++.+.... ...+++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~-~~~~~~ 92 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN-LLTKGT 92 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCCTTC
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhh-hcccCc
Confidence 37999999998774411 000 01 2355677777888775 2336788888777777665542 345566
Q ss_pred eEEEEeCCCCCCchhHHhhc-CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 183 RIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
.+++.....++......... +........... ...+++.++.... ....+.++.+ +|.
T Consensus 93 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~~~~---tg~ 151 (360)
T d1w23a_ 93 IGNYVLTGSWSEKALKEAKLLGETHIAASTKAN--------------SYQSIPDFSEFQL----NENDAYLHIT---SNN 151 (360)
T ss_dssp EEEEEECSHHHHHHHHHHHTTSEEEEEEECGGG--------------TSCSCCCGGGCCC----CTTEEEEEEE---SEE
T ss_pred ccceeeccchhhhhHHHHHHhhhcceeeccccc--------------cccchhhhhhccc----ccccceeEec---CCc
Confidence 67666655544332222211 111100000000 0012222222222 2334444433 466
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~ 341 (476)
+.| +++|.++|++||+++|+|-+++ + .+...-.+. ...|+.+++|.++.+-..|.++.++...+........
T Consensus 152 ~~~----~~~i~~~~~~~g~l~ivDavqs-~-g~~~id~~~--~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T d1w23a_ 152 TIY----GTQYQNFPEINHAPLIADMSSD-I-LSRPLKVNQ--FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTM 223 (360)
T ss_dssp TTT----TEECSSCCCCCSSCEEEECTTT-T-TSSCCCGGG--CSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGG
T ss_pred ccc----ceeeeeccccceeeEEeecccc-c-ccccccccc--ccceEEeeccccccCCcceeeEechhhhcccccCCcc
Confidence 777 6779999999999999999995 1 011111222 3447788898887433455555554433222111000
Q ss_pred --------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC--c----eEeeeeceeEEEE
Q 011856 342 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH--A----ICGGYISGMFGFF 407 (476)
Q Consensus 342 --------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~----~~v~~~g~~~~i~ 407 (476)
..............+....+....+........+..+.....+......... . ...++.+ .+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~-vvsf~ 302 (360)
T d1w23a_ 224 LQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM-NVTFN 302 (360)
T ss_dssp GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS-EEEEE
T ss_pred hhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhccee-EEEEE
Confidence 0011111222222233333332222222223333333333333222221111 1 0111111 22222
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEeC--CCcHHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~~--~~t~e~i~~~~~~l~~~~~~ 473 (476)
+ ++.....++...|.++||.+..+.. ..+|++. .+|.||++++++.|++..+.
T Consensus 303 i-------------~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 303 L-------------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp C-------------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred c-------------CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 2 3445557888899999999876521 2478875 44999999999999987653
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.2e-10 Score=111.40 Aligned_cols=316 Identities=7% Similarity=-0.091 Sum_probs=151.7
Q ss_pred CcHHHHHHHHHHHHhc--CCCC----C--C---CHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHhccCCc
Q 011856 116 ADDQVLAALGETMKKG--TSFG----A--P---CLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRE 182 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~~~~----~--~---~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~~~~~~ 182 (476)
-+++|++|+.+++.+. .+.+ . . .+...+..+.|++++.. .+.|+|++|++++++.++... ...+++
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~-~~~~~~ 90 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN-ILGDKT 90 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCTTCC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc-cccccc
Confidence 3799999999887541 1111 0 1 24566788888888863 336888887777766665432 334455
Q ss_pred eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcc
Q 011856 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (476)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (476)
.+++....+.+.. +.......+..........+ ...+.+.+++.+... .+..+|.. ..+.+|..
T Consensus 91 ~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~v~v~~--~~~~t~~~ 154 (360)
T d1bjna_ 91 TADYVDAGYWAAS-AIKEAKKYCTPNVFDAKVTV------------DGLRAVKPMREWQLS-DNAAYMHY--CPNETIDG 154 (360)
T ss_dssp EEEEEESSHHHHH-HHHHHTTTSEEEEEECEEEE------------TTEEEECCGGGCCCC-SSCSCEEE--CSEETTTT
T ss_pred ccceecccchhhh-hHHHHhhcCccceeeccccC------------CCcchhhhhhhhccC-CceeEEEe--cccccccC
Confidence 5555544433321 12111111110000000000 000222223333321 12333333 23345555
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCc-
Q 011856 263 APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM- 341 (476)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~- 341 (476)
.+.++ + .++.+++++++|-+++... .-.+..++..++.+.+|.++++...+.++.++...+........
T Consensus 155 ~~~~~----i--~~~~~~~~v~vDa~~~~~~----~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (360)
T d1bjna_ 155 IAIDE----T--PDFGADVVVAADFSSTILS----RPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSIL 224 (360)
T ss_dssp EECCC----C--CCCCTTCCEEEECTTTTTS----SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGG
T ss_pred ccccc----e--ecccccceeeeeeeccccc----eeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcch
Confidence 55332 3 3577899999997774211 11223344556778889998655566666555433222111000
Q ss_pred -------cccCCCCCcHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-----EeeeeceeEEEEE
Q 011856 342 -------YQAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-----CGGYISGMFGFFF 408 (476)
Q Consensus 342 -------~~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~v~~~g~~~~i~~ 408 (476)
.........+.....+. ..+..+. ....+...++.......+.+......... ..+. -..+.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs-~~v~~f~~ 302 (360)
T d1bjna_ 225 DYSILNDNGSMFNTPPTFAWYLSGLVFKWLKA-NGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRS-RMNVPFQL 302 (360)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBC-SSEEEEEE
T ss_pred hhHHHHhhhhhccccccchHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhhhccccccccCCccccc-ceEEEEEc
Confidence 00111122233333333 3333222 33333333333333222222222222111 1111 12333444
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
|+......+...|.++||.+..+. .+.+|++ ..+|+|||+++++.|++..++
T Consensus 303 -------------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 303 -------------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp -------------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 233334678888999999887752 2347886 456999999999999997653
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.94 E-value=3.5e-08 Score=94.53 Aligned_cols=313 Identities=16% Similarity=0.061 Sum_probs=165.7
Q ss_pred CcHHHHHHHHHHHHhcCCCC-----------CCCHHHHHHHHHHHhhCC-C-CCe--EEEeCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFG-----------APCLLENVLAEMVISAVP-S-IEM--VRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-----------~~~~~~~~la~~l~~~~~-~-~e~--v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|.|.+++...+.+-..-| +.++.+.-..++..++|. . .++ =+=..||+.||.+++.. ...+
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a--ll~p 116 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQP 116 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCCS
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH--HcCC
Confidence 46888888777665411111 134555444555666774 2 221 13356899999999883 2345
Q ss_pred CceEEEEeCCCCCCchhH-------HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 181 RERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
+++|+..+-..-|+.... ....+.......+... ..... -|.++++++.++. +.++||+-
T Consensus 117 gD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d--------~~~~~---IDyd~~~~~a~~~--kPklIi~G 183 (463)
T d2a7va1 117 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN--------PKTGL---IDYNQLALTARLF--RPRLIIAG 183 (463)
T ss_dssp CEECCC-------------------------------CCBC--------TTTCS---BCHHHHHHHHHHH--CCSEEEEC
T ss_pred CceEEeeccCcCcccccccccccccccceeeEeeeeeeecc--------CCCCc---CcHHHHHHHHhhc--CCceEEec
Confidence 566666543322221100 0001100000000000 00000 1899999998875 56677775
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEecH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~~ 329 (476)
...- -...+ +++++++|++.|++|++|=+| +|+ -.|. + ...+.. .|++|. -|.|.| -|.|.+++++
T Consensus 184 ~S~y--~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~-~-~sP~~~-aDvvt~tTHKTlrG-PrgGiIl~~~ 253 (463)
T d2a7va1 184 TSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKV-I-PSPFKH-ADIVTTTTHKTLRG-ARSGLIFYRK 253 (463)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTS-S-CCGGGT-CSEEEEESSGGGCS-CSCEEEEEEC
T ss_pred cccc--ccccC----HHHHHHHhhcccceEEechhhhhHHhhhhh-h-cChhhh-hhhhhchhhhhhcC-CCceEEEEcc
Confidence 4321 12344 999999999999999999999 677 3332 1 122332 488854 599974 4677777765
Q ss_pred ---------------HHHHhhcCC-CCccccCCCCCcHHHHHHHHH-HHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 330 ---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 330 ---------------~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~a-al~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
++.+.+... -+..+ +++-....|+++ ++....+ .++.+++.++.+.|.+.|.+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~i~~avFPg~q----ggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 329 (463)
T d2a7va1 254 GVKAVDPKTGREIPYTFEDRINFAVFPSLQ----GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 329 (463)
T ss_dssp SEEEEETTTEEEEECCCHHHHHHHHTTTTC----CSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccCccchhHHHHHhhhhcCcccc----hhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444310 12222 222233333332 3333222 56778888888888888887643
Q ss_pred hcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe------CC
Q 011856 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS------LA 454 (476)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~------~~ 454 (476)
+. ... .-...++.+++..... ......+.|.+.||.+.... ...+|+. -.
T Consensus 330 ~v--v~g-gTdnHlvlvdl~~~~~------------~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG 394 (463)
T d2a7va1 330 SL--VSG-GTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 394 (463)
T ss_dssp EE--GGG-SCSSSEEEEECTTTTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred ee--ecC-CCCCceeeeeccccCC------------CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCC
Confidence 21 110 1123355666532111 12445566778899876432 1236772 45
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~ 472 (476)
..++|+.++.+.|.+++.
T Consensus 395 ~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 395 FREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 678999998888887764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.93 E-value=1.5e-08 Score=97.49 Aligned_cols=314 Identities=18% Similarity=0.131 Sum_probs=169.4
Q ss_pred CcHHHHHHHHHHHHhcCC-------CCCCC----HHHHHHHHHHHhhCCCCC----eEEE-eCCHHHHHHHHHHHHHhcc
Q 011856 116 ADDQVLAALGETMKKGTS-------FGAPC----LLENVLAEMVISAVPSIE----MVRF-VNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-------~~~~~----~~~~~la~~l~~~~~~~e----~v~~-~~sGseA~~~al~~ar~~~ 179 (476)
.+|.|.+++...+.+-.. |+.-+ +.+.-..++..+.|. .| .+-+ ..||+.||.+++.. ...
T Consensus 43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-~~~~~~~anVqp~SGs~An~av~~a--ll~ 119 (470)
T d1rv3a_ 43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG-LDPQCWGVNVQPYSGSPANFAVYTA--LVE 119 (470)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHH--HTC
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CChhhccccccccCCccHHHHHHHH--hcC
Confidence 478888888777654211 11123 333334455566773 33 2222 45899999999983 234
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------CHHHHHHHHhcCCCCeEEEEEc
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~e 253 (476)
++++|+..+-..-|+...........+.. .+ ..-+.+.++.+ |.+++++..++. +.++||+-
T Consensus 120 pgD~im~~~l~~GGHlshg~~~~~~~~~~------~~----~~~~~~~y~v~~~~~~IDyd~l~~~a~~~--kPklIi~G 187 (470)
T d1rv3a_ 120 PHGRIMGLDLPDGGHLTHGFMTDKKKISA------TS----IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIAG 187 (470)
T ss_dssp TTCEEEEECGGGTCCGGGCCBCSSCBCSH------HH----HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEEC
T ss_pred CCCeEeeeccccCCcccccccccCCCccc------cc----ceeEeeEEEEecccCcccHHHHHHHHHhh--CcceEeec
Confidence 56677776433222211100000000000 00 00011222211 789999988865 56677775
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~ 329 (476)
...- -...+ +++++++|++.|++|++|=+| +|+ -.|.+ ...+.. .|++| .-|.|.| -|.|.++.++
T Consensus 188 ~S~y--~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~~--~sPl~~-aDvvt~tTHKtlrG-PrgGiI~~~~ 257 (470)
T d1rv3a_ 188 TSCY--SRNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPFEH-CHVVTTTTHKTLRG-CRAGMIFYRR 257 (470)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGGGT-CSEEEEESSGGGCC-CSCEEEEEEC
T ss_pred hhhc--cccCC----HHHHHHHHhccCCeEEecchhhhhhcccccc--CChhhe-eeeeeeehhhhccC-CcceEEEEcc
Confidence 4321 12344 999999999999999999999 677 33321 122222 38885 4599974 4667777665
Q ss_pred H---------------HHHhhcCCCCccccCCCCCcHHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 330 D---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 330 ~---------------i~~~l~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+ +.+.+.. ...-+..+++-....||+ .++....+ .++.+++.++.+.|.+.|.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~---avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~ 334 (470)
T d1rv3a_ 258 GVRSVDPKTGKEILYNLESLINS---AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYK 334 (470)
T ss_dssp SBCC-------CCBCCHHHHHHH---HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccchhHHHHHHHHhh---hcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 3 5454542 111122233333333333 23444333 456777778888888887765322
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEE------eCCC
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAH 455 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~------~~~~ 455 (476)
. ... .-...++.+++..... ...++.+.|.+.||.+.... ...+|+ .-..
T Consensus 335 v--~~g-gTdnHlvlvdl~~~g~------------~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~ 399 (470)
T d1rv3a_ 335 I--VTG-GSDNHLILVDLRSKGT------------DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL 399 (470)
T ss_dssp E--GGG-SCSSSEEEEEGGGGTC------------CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC
T ss_pred e--ccC-CCCCceEEEeecccCC------------cHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCC
Confidence 1 100 1123455666532111 12345556667899875321 123677 2567
Q ss_pred cHHHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKVKM 472 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~ 472 (476)
.++|+.++.+.|.++++
T Consensus 400 ~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 400 LEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999988888774
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=7.6e-07 Score=86.87 Aligned_cols=311 Identities=18% Similarity=0.200 Sum_probs=166.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCC---C----HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc------C
Q 011856 115 HADDQVLAALGETMKKGTSFGAP---C----LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT------G 180 (476)
Q Consensus 115 ~~~p~v~~a~~~~l~~~~~~~~~---~----~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~------~ 180 (476)
|-+|.+.+.+.+.....+.|. | + +..-++-..+++++ +.|-+-. ...|..|...|+.+++.++ .
T Consensus 76 hy~P~v~~~~~~~~TaYTPYQ-PaEiSQG~LQalfEfQtmi~eLT-GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~ 153 (471)
T d1wyub1 76 KYNPKLHEEAARLFADLHPYQ-DPRTAQGALRLMWELGEYLKALT-GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 153 (471)
T ss_dssp CCCCHHHHHHHHTTSSCCTTS-CGGGCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCcchhhhHHHHHhccCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCccccccchHHHHHHHHHHHHHHHhhhccccc
Confidence 446788887765332223332 2 1 23347777888887 6664433 2467777777777665542 1
Q ss_pred CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
...++.....+|..........+..+....... .+ ..|.+.++.... ++++++++..++..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~---~~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 154 TRRVVLVPDSAHGSNPATASMAGYQVREIPSGP-EG-------------EVDLEALKRELG---PHVAALMLTNPNTLGL 216 (471)
T ss_dssp TCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-TS-------------SBCHHHHHHHCS---TTEEEEEECSSCTTSC
T ss_pred ccccccCCcccccceeeeeecccceeecccccc-cc-------------cccchhhhhhhh---ccccceeeccCCCccc
Confidence 233455555565544333333332211111000 00 125666665543 4788888776665554
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEecccc----Cc-cccccchhhccCCCCchhh--hhhhc----C-CCCcEEEEEec
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMT----GF-RLAYGGAQEYFGVTPDLTT--LGKII----G-GGLPVGAYGGR 328 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~----g~-r~g~~~~~~~~g~~pDi~t--~sK~l----g-~G~~iG~~~~~ 328 (476)
.... .+.+.++++++|.++++|-+-. ++ ..+.. + -|+++ .++.+ + ||--+|++.++
T Consensus 217 ~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~------g--~div~vg~~q~~G~P~~~GGP~~G~~a~~ 284 (471)
T d1wyub1 217 FERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGDM------G--FDVVHLNLHKTFTVPHGGGGPGSGPVGVK 284 (471)
T ss_dssp CCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHH------T--CSEEECCTTTTTCCCCTTSCCCCCCEEEC
T ss_pred ccch----hhhhHHHHHhccccccccccchhhhhhccccCcc------c--ccccccccccccccccccccccccceeeh
Confidence 4434 7889999999999888885442 22 22211 1 13332 34444 3 23448899999
Q ss_pred HHHHHhhcCC----C---------Cccc---cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 329 RDIMEMVAPA----G---------PMYQ---AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 329 ~~i~~~l~~~----~---------~~~~---~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
++++..+--+ + +-.| ....+++.+.+.++...+..+.. .++-++..++..|+.++|++.+.
T Consensus 285 ~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~ 364 (471)
T d1wyub1 285 AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGY 364 (471)
T ss_dssp GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9887765310 0 0000 11122334444444444444443 56677788889999999865322
Q ss_pred hcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeC--CCcHHHHH
Q 011856 390 KAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSL--AHSSDDIQ 461 (476)
Q Consensus 390 ~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~--~~t~e~i~ 461 (476)
+ .. ..+.+ --+.+.. +......++.+.|++.|++-.... .+.+.++. .+|++|||
T Consensus 365 ~--~~----~~~~ff~EFvv~~-----------~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID 427 (471)
T d1wyub1 365 R--VP----YDGPSMHEFVAQP-----------PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLE 427 (471)
T ss_dssp B--CS----SCSSCCSCEEEBC-----------STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHH
T ss_pred e--ec----cCcceeeEEeecC-----------CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHH
Confidence 2 11 11222 1111111 111112567889999998643221 22344433 57999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++++
T Consensus 428 ~lv~aL~~i~~e 439 (471)
T d1wyub1 428 AFAEAMGALLKK 439 (471)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=1.3e-07 Score=91.12 Aligned_cols=283 Identities=16% Similarity=0.166 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh----hcCCCCccCCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV----KAGSGVATLGLPD 213 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~----~~g~~~~~~~~~~ 213 (476)
+...++.+.|+++. +.+.+-+ ...|+.|...++.+++.+++++++++... -|..+...+. ..|..
T Consensus 108 q~l~e~q~~l~elt-Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~-~~p~~~~v~~t~a~~~g~~-------- 177 (437)
T d1wyua1 108 QATFEYQTMIAELA-GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQG-VHPEYRAVLRAYLEAVGAK-------- 177 (437)
T ss_dssp HHHHHHHHHHHHHH-TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETT-SCHHHHHHHHHHHHHTTCE--------
T ss_pred HHHHHHHHHHHHhh-CCCccccCchHHHHHHHHHHHHHHhhhcccccccccc-cChHHhhhhhhhcccceee--------
Confidence 34457888888887 6666544 35788888888888989999988887554 4443333322 22332
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 293 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r 293 (476)
++.++.++... .+.+..+++++|++... +..|.+.. ++++.+++++.|.+++.|--...+
T Consensus 178 -----------vv~v~~~~~~~---~~~~~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al- 237 (437)
T d1wyua1 178 -----------LLTLPLEGGRT---PLPEVGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSL- 237 (437)
T ss_dssp -----------EEEECCBTTBC---CCCCCCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGG-
T ss_pred -----------EEeeecccccc---hhhhhccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhh-
Confidence 23333221100 01122457888877655 34577755 899999999999988877433211
Q ss_pred ccccchhhccCCCCchhhh-hhhc----C-CCCcEEEEEecHHHHHhhcCC---------CC-cc---------------
Q 011856 294 LAYGGAQEYFGVTPDLTTL-GKII----G-GGLPVGAYGGRRDIMEMVAPA---------GP-MY--------------- 342 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~t~-sK~l----g-~G~~iG~~~~~~~i~~~l~~~---------~~-~~--------------- 342 (476)
+..-....+|. ||++. +|.| + ||-..|++.+++++...+-.. +. .+
T Consensus 238 -~~l~~Pg~~Ga--Di~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRek 314 (437)
T d1wyua1 238 -GVLKPPGAYGA--DIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAK 314 (437)
T ss_dssp -GTBCCHHHHTC--SEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGG
T ss_pred -hcccccccccc--ceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccc
Confidence 11111122333 66521 3333 3 234478888898887655310 00 00
Q ss_pred -ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchh
Q 011856 343 -QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 418 (476)
Q Consensus 343 -~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~ 418 (476)
..+..+.+.+.+..+...+..+.. .+.-++...+..|+.++|.++. + ...+.....|--+.+..+
T Consensus 315 atsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~---g-~~~~~~~~~f~ef~v~~~------- 383 (437)
T d1wyua1 315 AKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---G-VRPFTPKPFFNEFALALP------- 383 (437)
T ss_dssp SSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-CEECSCSSBCSEEEEECS-------
T ss_pred cccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcC---C-eeccCCCCeeeEEEEECC-------
Confidence 011122333333333333433332 3455666677778887776541 1 111111222222222111
Q ss_pred hcccchHHHHHHHHHHHHCCeEeccC-----CCcceEEeC--CCcHHHHHHHHHHHHHHH
Q 011856 419 AKKSETTKFARFYRGMLEEGVYFAPS-----QFEAGFTSL--AHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~~~~~~--~~t~e~i~~~~~~l~~~~ 471 (476)
....++.+.|+++|+..... ....+.++. ..|++|||+++++|++++
T Consensus 384 ------~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 384 ------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ------CCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 01357889999999964221 122344543 578999999999998864
|