Citrus Sinensis ID: 011891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccEEEEEccccccccccEEEEEEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEccccccccccEEEEEEEEcccccccccccccccccEEEEEEEEEccccccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccccccEEEEccccccccccccHHHHcccccccEEEcccccccccccccccccccEEEEccccccccccHHHHcHccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHHHHcccEEEccccccccccccccccccHEccccccccccccccccccHHHHHHHcccccHcccHHHHHHHHHHHHHHHcccccccccHHHcccccccEEEcccccccHHHHccccccEEEEEccccccccccccEEEEEEEEEEccccccccccEEEEEEEEEcccccEEEEcccccccccccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccccEEEEEEcEEEEEEEcccccccccccccccccccHccccHHHccc
Coil and Loop (DISEMBL)
mphsnieqLSESVQHHGKLNQIIMAACNiftktpnpslIQHLNKLVILNlsgcsklkslpeissagnIEKILLdgtaieelpssiGCLSRLlelnlgdcknlktlpsslcklKSLEEICltgsaieelpspiECLSALcvldlgdckslkslklpfdglysltylyltdcaitelpeslglLSSLEELYLErnnferipeSIIRLSKLSSLLVSYCERlqslpklpcnlywldaqhcttleslsglfssYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKisypalqghvvlpgneipmwfssqgmgssitlkmqpgcfsnnkvfGFVFCAIVAFrdhhvrdwSFKFYCEFkiklkdcdphVIQRYLgrvnyvepdhlllgyyffnhqdlngcweyncvpEAVQFYFKKVLgsetetldccgvkkcgihlfhasdsmdsmedpskvfnrkeveephpkrlkyl
Flexible Loop (DISEMBL)
MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFhasdsmdsmedpskvfnrkeveephpkrlkyl
Low Complexity Region (SEG)
MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITelpeslgllssleelyleRNNFERIPESIIRlsklssllvsYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Disordered region (IsUnstruct)
****************GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHA******************************
Disordered Region (DISOPRED)
*PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATAR********SYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD****************************
Disordered Region (DISEMBL)
*************QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRK*************
Disordered Region (DISPRO)
****NIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	475	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.68	0.282	0.320	7e-29
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.446	0.162	0.32	2e-16
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.412	0.191	0.331	3e-15
Q9FL92	1372	Probable WRKY transcripti	no	no	0.844	0.292	0.261	2e-14
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.267	0.067	0.372	5e-14
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.412	0.105	0.306	3e-13
O82500	1095	Putative disease resistan	no	no	0.511	0.221	0.261	9e-13
F1MCA7	1536	Leucine-rich repeat-conta	yes	no	0.431	0.133	0.268	2e-12
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.421	0.134	0.274	5e-12
P70587	1490	Leucine-rich repeat-conta	yes	no	0.421	0.134	0.274	6e-12

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 174/377 (46%), Gaps = 54/377 (14%)

Query: 4    SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
            SN+E++  S+    K+  + +  C    + P      ++  L  L L  C  L+ LPEI 
Sbjct: 653  SNLEEVHHSLGCCSKVIGLYLNDCKSLKRFP----CVNVESLEYLGLRSCDSLEKLPEIY 708

Query: 64   SAGNIE-KILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLT 121
                 E +I + G+ I ELPSSI    + + +L L + KNL  LPSS+C+LKSL  + ++
Sbjct: 709  GRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVS 768

Query: 122  G-SAIEELPSPIECLSALCVLDLGDCKSLK-----------------------SLKLP-- 155
            G S +E LP  I  L  L V D  D   L+                         + P  
Sbjct: 769  GCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPV 828

Query: 156  FDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213
             +GL+SL YL L+ C + +  LPE +G LSSL++L L RNNFE +P SI +L  L SL +
Sbjct: 829  AEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDL 888

Query: 214  SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDR-KLRGIVE 272
              C+RL  LP+LP  L  L       L          K + + + +  KL R KL     
Sbjct: 889  KDCQRLTQLPELPPELNELHVDCHMAL----------KFIHYLVTKRKKLHRVKLDDAHN 938

Query: 273  DALQNIQLMATARWKEI---REKISYPALQGHVVLPGN----EIPMWFSSQGMGSSITLK 325
            D + N  L A   ++ I   R  IS        V  G     +IP WF  QG  SS+++ 
Sbjct: 939  DTMYN--LFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVN 996

Query: 326  MQPGCFSNNKVFGFVFC 342
            +    +  +K  GF  C
Sbjct: 997  LPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 13/225 (5%)

Query: 1    MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP 60
            + ++ IE++  ++ +  +L ++ M  C      P      +L+ L  L+LSGCS L+S P
Sbjct: 871  LENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV---NLSSLETLDLSGCSSLRSFP 927

Query: 61   EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120
             IS +  I+ + L+ TAIEE+P  +   + L  L L +CK+L TLP+++  L+ L    +
Sbjct: 928  LISES--IKWLYLENTAIEEIPD-LSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEM 984

Query: 121  TG-SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL 179
               + +E LP  +  LS+L +LDL  C SL++  L      ++ +LYL + AI E+P ++
Sbjct: 985  KECTGLEVLPIDVN-LSSLMILDLSGCSSLRTFPLIST---NIVWLYLENTAIEEIPSTI 1040

Query: 180  GLLSSLEELYLER-NNFERIPESIIRLSKLSSLLVSYCERLQSLP 223
            G L  L +L ++     E +P   + LS L  L +S C  L++ P
Sbjct: 1041 GNLHRLVKLEMKECTGLEVLPTD-VNLSSLMILDLSGCSSLRTFP 1084

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 12/208 (5%)

Query: 6   IEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-EISS 64
           +E+L +S+   G++ ++ +    I    P+ S +  L KL + N    S L  LP +  +
Sbjct: 352 LERLPKSL---GQVEELTLIGGRIHA-LPSASGMSSLQKLTVDN----SSLAKLPADFGA 403

Query: 65  AGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA 124
            GN+  + L  T + +LP+SIG L  L  L+L D   L +LP+S  +L  L+E+ L G+ 
Sbjct: 404 LGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNR 463

Query: 125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 184
           I ELPS +   S+L  L + D  +L  L   F  L +L +L L++  + ELP + G L +
Sbjct: 464 IHELPS-MGGASSLQTLTVDDT-ALAGLPADFGALRNLAHLSLSNTQLRELPANTGNLHA 521

Query: 185 LEELYLERN-NFERIPESIIRLSKLSSL 211
           L+ L L+ N     +P S+  LS L  L
Sbjct: 522 LKTLSLQGNQQLATLPSSLGYLSGLEEL 549

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 191/471 (40%), Gaps = 70/471 (14%)

Query: 19   LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI 78
            L  + +  C      P    + HL    ++NLSGC+++KS PEI    NIE + L GT I
Sbjct: 617  LEVVDLQGCTRLQSFPATGQLLHLR---VVNLSGCTEIKSFPEIPP--NIETLNLQGTGI 671

Query: 79   EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSA 137
             ELP SI      ++ N  +  NL      L  + +LE+  L   +++ ++ +  +    
Sbjct: 672  IELPLSI------VKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGK 725

Query: 138  LCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER 197
            L  L+L DC  L+SL      L  L  L L+ C  +EL    G   +L+ELYL       
Sbjct: 726  LSCLELNDCSRLRSLP-NMVNLELLKALDLSGC--SELETIQGFPRNLKELYL------- 775

Query: 198  IPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYL 257
                                 ++ +P+LP +L + +A  C +L+S+   F     V +  
Sbjct: 776  -----------------VGTAVRQVPQLPQSLEFFNAHGCVSLKSIRLDFKKLP-VHYTF 817

Query: 258  NENFKLDRKLRGIVEDALQNIQLMATARWKEI-REK----ISYPALQGHVVLPGNEI--P 310
            +  F L  +   +V D L  +Q MA    K I RE+     S   +Q        E+   
Sbjct: 818  SNCFDLSPQ---VVNDFL--VQAMANVIAKHIPRERHVTGFSQKTVQRSSRDSQQELNKT 872

Query: 311  MWFS---SQGMGSSITLKMQPGCFS--------NNKVFGFVFCAIVAFRDHHVRDWSFKF 359
            + FS         +  L +QPG  S         N + GF     VAF + +  D  F  
Sbjct: 873  LAFSFCAPSHANQNSKLDLQPGSSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGI 932

Query: 360  YCEFKIKLKDCDPHVIQ-----RYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEA 414
             C  K K K+   H  +       LG+   VE DH  + +      D +   + +   + 
Sbjct: 933  SCVCKWKNKEGHSHRREINLHCWALGKA--VERDHTFVFFDVNMRPDTDEGNDPDIWADL 990

Query: 415  VQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSMEDPSKVFNRKEVE 465
            V F F  V        D C V +CG+ L  A +   S+E+ S V +   +E
Sbjct: 991  VVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCNTSIENISPVLSLDPME 1041

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 26/153 (16%)

Query: 36   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
            PS++  L  L +LNLSGCSKL + PEIS   N++++ + GT I+E+PSSI  L  L +L+
Sbjct: 1322 PSMVD-LESLEVLNLSGCSKLGNFPEISP--NVKELYMGGTMIQEIPSSIKNLVLLEKLD 1378

Query: 96   LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
            L + ++LK LP+S+ KLK LE + L+G                       C SL+     
Sbjct: 1379 LENSRHLKNLPTSIYKLKHLETLNLSG-----------------------CISLERFPDS 1415

Query: 156  FDGLYSLTYLYLTDCAITELPESLGLLSSLEEL 188
               +  L +L L+   I ELP S+  L++L+EL
Sbjct: 1416 SRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 13/209 (6%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           P  I  L KL  L+L G ++++ LP  +     + ++ LD   ++ LP  +G L++L  L
Sbjct: 168 PETISQLTKLKRLDL-GDNEIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYL 226

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
           ++ + + L+ LP+ +  L SL ++ L  + +E LP  I  LS L +L L D   L+ L  
Sbjct: 227 DVSENR-LEELPNEISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKL-DQNRLQRLND 284

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 214
                 ++  L LT+  ++ELP S+G ++ L  L ++RN  E +P  I + + L  L + 
Sbjct: 285 TLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALEYLPLEIGQCANLGVLSL- 343

Query: 215 YCERLQSLPKLPCNLYWLDAQHCTTLESL 243
              R   L KLP  L      +CT L  L
Sbjct: 344 ---RDNKLKKLPPEL-----GNCTVLHVL 364

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 67/310 (21%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPSSIGCLSRLLELN 95
           S +Q L  L  +NL+    L+ LP +  A  + ++ L    ++ ELPSSI  L  L+ L 
Sbjct: 625 SGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLE 684

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
           +  CK L+ +P+++                  LPS       L VL    C  L++    
Sbjct: 685 MSCCKKLEIIPTNI-----------------NLPS-------LEVLHFRYCTRLQTFP-- 718

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER------------------ 197
            +   ++  L L   AITE+P S+   S ++E+ +ER   +R                  
Sbjct: 719 -EISTNIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEKLCLRENKE 777

Query: 198 ---IPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVF 254
              IP  +  L +L  + +SYC  + SLPKLP ++  L A +C +L+ L G F +     
Sbjct: 778 LETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQILHGHFRNKSIHL 837

Query: 255 FYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFS 314
            ++N   KL ++ +  +  ++   Q    A                  VLPG  +P +FS
Sbjct: 838 NFIN-CLKLGQRAQEKIHRSVYIHQSSYIAD-----------------VLPGEHVPAYFS 879

Query: 315 SQGMGSSITL 324
            +  GSSI +
Sbjct: 880 YRSTGSSIMI 889

Arabidopsis thaliana (taxid: 3702)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 117/227 (51%), Gaps = 22/227 (9%)

Query: 45  LVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 102
           + +L+ S CS L+ +P+   +    +E++ LD   IEELP  +     L +L++ D  +L
Sbjct: 24  ISVLDYSHCS-LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALKKLSIPD-NDL 81

Query: 103 KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 162
             LP+++  L +L+E+ ++ + ++E P  I+C   L +++      +  L   F  L +L
Sbjct: 82  SNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE-ASVNPISKLPDGFTQLLNL 140

Query: 163 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL---------LV 213
           T LYL D  +  LP + G L+ L  L L  N+ + +P+S+ +L++L  L         L 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELP 200

Query: 214 SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 260
              +++Q+L +L     W+D      L+ L G++     V+  +++N
Sbjct: 201 EVLDQIQNLREL-----WMD---NNALQVLPGVWKLKMLVYLDMSKN 239

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 22/222 (9%)

Query: 45  LVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 102
           + +L+ S CS L+ +P+   +    +E++ LD   IEELP  +     L +L++ D  +L
Sbjct: 24  ISVLDYSHCS-LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPD-NDL 81

Query: 103 KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 162
            +LP+S+  L +L+E+ ++ + ++E P  I+C   L +++      +  L   F  L +L
Sbjct: 82  SSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE-ASVNPISKLPDGFTQLLNL 140

Query: 163 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL---------LV 213
           T LYL D  +  LP + G L  L  L L  N+ + +P+S+ +L++L  L         L 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELP 200

Query: 214 SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFF 255
              +++Q+L +L     W+D      L+ L G     K + +
Sbjct: 201 EVLDQIQNLREL-----WMD---NNALQVLPGSIGKLKMLVY 234

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 22/222 (9%)

Query: 45  LVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 102
           + +L+ S CS L+ +P+   +    +E++ LD   IEELP  +     L +L++ D  +L
Sbjct: 24  ISVLDYSHCS-LQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPD-NDL 81

Query: 103 KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 162
            +LP+S+  L +L+E+ ++ + ++E P  I+C   L +++      +  L   F  L +L
Sbjct: 82  SSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIE-ASVNPISKLPDGFTQLLNL 140

Query: 163 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL---------LV 213
           T LYL D  +  LP + G L  L  L L  N+ + +P+S+ +L++L  L         L 
Sbjct: 141 TQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELP 200

Query: 214 SYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFF 255
              +++Q+L +L     W+D      L+ L G     K + +
Sbjct: 201 EVLDQIQNLREL-----WMD---NNALQVLPGSIGKLKMLVY 234

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
297794743	1184	predicted protein [Arabidopsis lyrata su	0.943	0.378	0.325	4e-49
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.875	0.282	0.333	8e-49
451798990	1335	TMV resistance protein N-like protein 7	0.852	0.303	0.341	2e-48
359493483	1274	PREDICTED: TMV resistance protein N-like	0.842	0.313	0.342	8e-48
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.901	0.274	0.319	2e-46
451798988	1219	TMV resistance protein N-like protein 6	0.749	0.292	0.355	7e-46
359493487	1162	PREDICTED: TMV resistance protein N-like	0.789	0.322	0.349	3e-45
255563202	1158	leucine-rich repeat containing protein,	0.941	0.386	0.317	4e-45
227438275	1226	disease resistance protein [Brassica rap	0.84	0.325	0.319	2e-44
240256011	1210	TIR-NBS-LRR class disease resistance pro	0.898	0.352	0.350	9e-44

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 236/504 (46%), Gaps = 56/504 (11%)

Query: 12   SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKI 71
            S++    L  +    C      P    ++ L  L+   LSGCSKL++ P IS   NIE +
Sbjct: 568  SIRQMDSLVYLNFRECTSLKSLPKGISLKSLKSLI---LSGCSKLRTFPTISE--NIESL 622

Query: 72   LLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG--------- 122
             LDGTAI+ +P SI  L  L  LNL  C  L+ LPS+LCK+KSL+E+ L+G         
Sbjct: 623  YLDGTAIKRVPESIDSLRYLAVLNLKKCCKLRHLPSNLCKMKSLQELILSGCSKLKCFPE 682

Query: 123  ---------------SAIEELPSPIECLSALCVLDLGDCKSLKSLK---LPFDGLYSLTY 164
                           +AI+++P  + C+S L +   G  K   S     LPF G   L+ 
Sbjct: 683  IDEDMEHLEILLMDDTAIKQIPIKM-CMSNLKMFTFGGSKFQGSTGYELLPFSGCSHLSD 741

Query: 165  LYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK 224
            LYLTDC + +LP +   LSS+  L L RNN E +PESI  L  L SL + +C +L SLP 
Sbjct: 742  LYLTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLDLKHCRKLNSLPV 801

Query: 225  LPCNLYWLDAQHCTTLESLSG-----LFSSYKCVFFYLNENFKLDRKLR-GIVEDALQNI 278
            LP NL +LDA  C +LE+++      + +      F   + FKL+R+ +  IV  A    
Sbjct: 802  LPSNLQYLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCFKLNREAQENIVAHAQLKS 861

Query: 279  QLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFG 338
            Q++A A  K   + +    L   V  PG+++P+WF +Q MG+SI   + P  + ++K  G
Sbjct: 862  QILANACLKRNHKGLVLEPL-ASVSFPGSDLPLWFRNQRMGTSIDTHLPPH-WCDSKFRG 919

Query: 339  FVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVN-----------YVEP 387
               C +V+F+D+  +   F   C+ K K +  D       LG  N            +  
Sbjct: 920  LSLCVVVSFKDYEDQTSRFSVICKCKFKSESGDCIRFICTLGGWNKLCGSSGHQSRKLGS 979

Query: 388  DHLLLGY---YFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFH 444
            DH+ L Y   +       +G     C   A  F F  V       L    V KCG+ L +
Sbjct: 980  DHVFLSYNNCFHVKKFREDGNDNNRCCNTAASFKF-FVTDDSKRKLGSFEVVKCGMGLLY 1038

Query: 445  ASDSMDSMEDPSKVFNRKEVEEPH 468
            A D  D     +   N KEV   H
Sbjct: 1039 APDESDYRLQETLENNLKEVTSIH 1062

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 246/489 (50%), Gaps = 73/489 (14%)

Query: 36   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
            PS I  L KL+ LNLSGCS +   P++S+  NI+++ LDGTAI E+PSSI CL  L+EL+
Sbjct: 801  PSSIGDLRKLIYLNLSGCSSITEFPKVSN--NIKELYLDGTAIREIPSSIDCLFELVELH 858

Query: 96   LGDCKNLKTLPSSLCKLKSLEEICLTG------------------------SAIEELPSP 131
            L +CK  + LPSS+C L+ LE + L+G                        + I +LPSP
Sbjct: 859  LRNCKQFEILPSSICTLRKLERLNLSGCLQFRDFPEVLEPMVCLRYLYLEETRITKLPSP 918

Query: 132  IECLSALCVLDLGDCKSLKSLKLPFD--------GLYSLTYLYLTDCAITELPESLGLLS 183
            I  L  L  L++G+CK L  ++   D         L  L  L L  C I+ +P+SLG LS
Sbjct: 919  IGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVPDSLGCLS 978

Query: 184  SLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL 243
            SLE L L  NNF  IP SI +LS+L  L +  C+RL+SLP+LP  L  LDA +C +L  L
Sbjct: 979  SLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKRLESLPELPPRLSKLDADNCESLNYL 1038

Query: 244  SGLFSSY--KCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQG- 300
                S+     +F ++  N     ++  I+  AL+  +L  T R  ++ +      L+G 
Sbjct: 1039 GSSSSTVVKGNIFEFIFTNCLSLCRINQILPYALKKFRLY-TKRLHQLTD-----VLEGA 1092

Query: 301  -HVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKF 359
                LPG   P W S Q  GS++T ++    ++N+K  GF  CA++AF   H    S + 
Sbjct: 1093 CSFFLPGGVSPQWLSHQSWGSTVTCQLSSH-WANSKFLGFSLCAVIAF---HSFGHSLQV 1148

Query: 360  YCEFKIKLKDCDPHVIQRYLG---RVNYVEPDHLLLGY---------YFFNHQDLNGCWE 407
             C +    +  D H +  YL        ++ +H+L+G+         Y F+        E
Sbjct: 1149 KCTYHFSNEHGDSHDLYCYLHGWYDEKRIDSEHILVGFDPCLVAKEDYMFS--------E 1200

Query: 408  YNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASD--SMDSMEDPSKVFNRKEVE 465
            Y+ V  +V+F  + + G+    LD C V KCG+ L +  +   +D   DP +   + +  
Sbjct: 1201 YSEV--SVEFQLEDINGN-LLPLDLCQVHKCGVRLLYEDEIHCIDYYHDPLEAMFQCKRA 1257

Query: 466  EPHPKRLKY 474
                KR ++
Sbjct: 1258 SLQGKRARF 1266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 230/475 (48%), Gaps = 70/475 (14%)

Query: 36   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSIGCLSRLL 92
            P  I  L  L  L LS C++LK LPEI    N+E ++   LDG+ I ELPSSIGCL+ L+
Sbjct: 788  PRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFLDGSGIIELPSSIGCLNGLV 845

Query: 93   ELNLGDCKNLKTLPSSLCKLKSLEEI-------------------CLT-----GSAIEEL 128
             LNL +CK L +LP S C+L SL  +                   CLT     GS ++E+
Sbjct: 846  FLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNLGSLQCLTELNADGSGVQEV 905

Query: 129  PSPIECLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCA 171
            P  I  L+ L +L L  CK  +S                L+LP F GLYSL  L L  C 
Sbjct: 906  PPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCN 965

Query: 172  ITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 229
            ++E  LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++
Sbjct: 966  LSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSV 1025

Query: 230  YWLDAQHCTTLESLSGLFSSYKC-----VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT 283
              L+A  CT+LE+ +   S+Y       + F     F+L + +   IV   L+ IQLM++
Sbjct: 1026 ESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1085

Query: 284  -ARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFC 342
              ++      I  P  + + ++PGN IP WF  Q +G S+ +++ P  + N K+ G  FC
Sbjct: 1086 IPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIEL-PQHWYNTKLMGLAFC 1144

Query: 343  AIVAFR-----DHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFF 397
            A + F+     +      SF   C       +   H +        ++E DH L  Y   
Sbjct: 1145 AALNFKGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSLYTPPEGSKFIESDHTLFEYISL 1204

Query: 398  NHQDL-NGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDS 451
               ++  G W        V  +   + GS+ E      VKKCGI L +  D  D 
Sbjct: 1205 ARLEICLGNWFRKLSDNVVASF--ALTGSDGE------VKKCGIRLVYEEDEKDG 1251

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 161/470 (34%), Positives = 231/470 (49%), Gaps = 70/470 (14%)

Query: 41   HLNKLVILNLSGCSKLKSLPEISSAGNIE---KILLDGTAIEELPSSIGCLSRLLELNLG 97
            H+  L IL LSGCSKLK  PE+   GN+E    + L+GTAI+ LP SI  L+ L  LNL 
Sbjct: 722  HMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLK 779

Query: 98   DCKNLKTLPSSLCKLKSLEEI-------------------CLT-----GSAIEELPSPIE 133
            +CK+L++LP S+ KLKSL+ +                   CLT     GS ++E+P  I 
Sbjct: 780  ECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSIT 839

Query: 134  CLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCAITE-- 174
             L+ L +L L  CK  +S                L+LP F GLYSL  L L  C ++E  
Sbjct: 840  LLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGA 899

Query: 175  LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDA 234
            LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++  L+A
Sbjct: 900  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 959

Query: 235  QHCTTLESLSGLFSSYKC-----VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT-ARWK 287
              CT+LE+ +   S+Y       + F     F+L + +   IV   L+ IQLM++  ++ 
Sbjct: 960  HSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFL 1019

Query: 288  EIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAF 347
                 I  P  + + ++PGN IP WF  Q +G S+ +++ P  + N K+ G  FCA + F
Sbjct: 1020 VPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIEL-PQHWYNTKLMGLAFCAALNF 1078

Query: 348  R-----DHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDL 402
            +     +      SF   C       +   H +        ++E DH L  Y      ++
Sbjct: 1079 KGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSLYTPPEGSKFIESDHTLFEYISLARLEI 1138

Query: 403  -NGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDS 451
              G W        V  +   + GS+ E      VKKCGI L +  D  D 
Sbjct: 1139 CLGNWFRKLSDNVVASF--ALTGSDGE------VKKCGIRLVYEEDEKDG 1180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 244/494 (49%), Gaps = 66/494 (13%)

Query: 4    SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
            + IE+L  S+    +L  + +  CN     P  S +  L  L  L+LSGCS +   P++S
Sbjct: 795  TAIEELPSSIGDLRELIYLDLGGCNRLKNLP--SAVSKLVCLEKLDLSGCSNITEFPKVS 852

Query: 64   SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG- 122
            +   I+++ L+GTAI E+PSSI CL  L EL+L +CK  + LPSS+CKL+ L+ + L+G 
Sbjct: 853  NT--IKELYLNGTAIREIPSSIECLFELAELHLRNCKQFEILPSSICKLRKLQRLNLSGC 910

Query: 123  -----------------------SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD-- 157
                                   + I +LPSPI  L  L  L++G+C+ L+ ++   D  
Sbjct: 911  VQFRDFPEVLEPMVCLRYLYLEQTRITKLPSPIGNLKGLACLEVGNCQHLRDIECIVDLQ 970

Query: 158  -----GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 212
                  L  L  L L  C I E+P+SLGL+SSLE L L  NNF  IP SI +L +L  L 
Sbjct: 971  LPERCKLDCLRKLNLDGCQIWEVPDSLGLVSSLEVLDLSGNNFRSIPISINKLFELQYLG 1030

Query: 213  VSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKC-VFFYLNENFKLDRKLRGIV 271
            +  C  L+SLP+LP  L  LDA +C +L ++S   ++ +  +F ++  N K  R++  I+
Sbjct: 1031 LRNCRNLESLPELPPRLSKLDADNCWSLRTVSCSSTAVEGNIFEFIFTNCKRLRRINQIL 1090

Query: 272  EDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCF 331
            E +L   QL     + ++ +    P       LPG+  P WFS Q  GS +T ++    +
Sbjct: 1091 EYSLLKFQLYTKRLYHQLPD---VPEEACSFCLPGDMTPEWFSHQSWGSIVTFQLSSH-W 1146

Query: 332  SNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYL----GRVNY--- 384
            ++ K  GF  CA++AF   H    S +  C +    +  D H +  YL    G   Y   
Sbjct: 1147 AHTKFLGFSLCAVIAF---HSFSHSLQVKCTYHFHNEHGDSHDLYCYLHVCYGNDLYCYL 1203

Query: 385  --------VEPDHLLLGY---YFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCC 433
                    +   H+ +G          D+    +Y+ V  +V+F  + + G     LD C
Sbjct: 1204 HDWYGEKRINSKHIFVGLDPCLVAKENDMFS--KYSEV--SVEFQLEDMNGY-LLPLDLC 1258

Query: 434  GVKKCGIHLFHASD 447
             V +CG+ L HA+D
Sbjct: 1259 QVVECGVRLLHAND 1272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 206/416 (49%), Gaps = 60/416 (14%)

Query: 36   PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSIGCLSRLL 92
            P  I  L  L  L LS C++LK LPEI    N+E ++   LDG+ I ELPSSIGCL+ L+
Sbjct: 780  PRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFLDGSGIIELPSSIGCLNGLV 837

Query: 93   ELNLGDCKNLKTLPSSLCKLKSLEEICL------------------------TGSAIEEL 128
             LNL +CK L +LP S C+L SL  + L                         GS I+E+
Sbjct: 838  FLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEV 897

Query: 129  PSPIECLSALCVLDLGDCKSLKS----------------LKLP-FDGLYSLTYLYLTDCA 171
            P  I  L+ L  L L  CK   S                L+LP F GLYSL  L L  C 
Sbjct: 898  PPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSLRVLILQRCN 957

Query: 172  ITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 229
            ++E  LP  LG + SLE L L RN+F  IP S+  LS+L SL + YC+ LQSLP+LP ++
Sbjct: 958  LSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSV 1017

Query: 230  YWLDAQHCTTLESL---SGLFSSYKC--VFFYLNENFKL-DRKLRGIVEDALQNIQLMAT 283
              L+A  CT+LE+    SG ++S K   + F     F+L + +   IV   L+ IQLM++
Sbjct: 1018 ESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1077

Query: 284  ARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCA 343
                 +   I  P  + + ++PG+ IP WF  Q +G S+ +++ P  + N K+ G  FCA
Sbjct: 1078 IPKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPPHWY-NTKLMGLAFCA 1136

Query: 344  IVAFRDH-----HVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGY 394
             + F+            SF   C       +   H +   L    ++E DH L  Y
Sbjct: 1137 ALNFKGAMDGYPGTEPSSFGLVCYLNDCFVETGLHSLYTPLEGSKFIESDHTLFEY 1192

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 215/435 (49%), Gaps = 60/435 (13%)

Query: 17   GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIE---KILL 73
            G L ++I        K  + S   H+  L IL LSGCSKLK  PE+   GN+E    + L
Sbjct: 704  GALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLSL 761

Query: 74   DGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL------------- 120
            +GTAI+ LP SI  L+ L  LNL +CK+L++LP S+ KLKSL+ + L             
Sbjct: 762  EGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDL 821

Query: 121  -----------TGSAIEELPSPIECLSALCVLDLGDCKSLKS----------------LK 153
                        GS I+E+P  I  L+ L  L L  CK   S                L+
Sbjct: 822  GSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELR 881

Query: 154  LP-FDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 210
            LP F GLYSL  L L  C ++E  LP  LG + SLE L L RN+F  IP S+  LS+L S
Sbjct: 882  LPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRS 941

Query: 211  LLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL---SGLFSSYKC--VFFYLNENFKL-D 264
            L + YC+ LQSLP+LP ++  L+A  CT+LE+    SG ++S K   + F     F+L +
Sbjct: 942  LTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGE 1001

Query: 265  RKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITL 324
             +   IV   L+ IQLM++     +   I  P  + + ++PG+ IP WF  Q +G S+ +
Sbjct: 1002 NQGSDIVGAILEGIQLMSSIPKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQSVGCSVNI 1061

Query: 325  KMQPGCFSNNKVFGFVFCAIVAFRDH-----HVRDWSFKFYCEFKIKLKDCDPHVIQRYL 379
            ++ P  + N K+ G  FCA + F+            SF   C       +   H +   L
Sbjct: 1062 ELPPHWY-NTKLMGLAFCAALNFKGAMDGYPGTEPSSFGLVCYLNDCFVETGLHSLYTPL 1120

Query: 380  GRVNYVEPDHLLLGY 394
                ++E DH L  Y
Sbjct: 1121 EGSKFIESDHTLFEY 1135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 245/520 (47%), Gaps = 73/520 (14%)

Query: 1    MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPN----PSLIQHLNKLVILNLSGCSKL 56
             P+S +E L E  +    + Q+          + N    P+ I  L  L  L+LSGCS L
Sbjct: 655  FPYSRLEGLWEGDKVPSSIGQLTKLTFMSLRCSKNIRSFPTTID-LQSLETLDLSGCSNL 713

Query: 57   KSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE 116
            K  PE+S   NI  + L+ TAI+E+P SI  LS+L+ LN+ +C  L+ +PS++ KLKSL 
Sbjct: 714  KIFPEVSR--NIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLG 771

Query: 117  EICLTG------------------------SAIEELPSPIECLSALCVLDLGDCKSLKSL 152
             + L+G                        +A+  LP     L AL +L+  DC  L  L
Sbjct: 772  VLILSGCKKLESFPEILETTNHLQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKL 831

Query: 153  KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 212
                  L SL  L    C ++ LP  L  LSS+ EL L  +NF+ +P  I +LSKL  + 
Sbjct: 832  PKNMKNLKSLAELRAGGCNLSTLPADLKYLSSIVELNLSGSNFDTMPAGINQLSKLRWIN 891

Query: 213  VSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL--------FSSYKCVFFYLNENFKLD 264
            V+ C+RLQSLP+LP  + +L+A+ C +L S+SGL         +S     F     FKLD
Sbjct: 892  VTGCKRLQSLPELPPRIRYLNARDCRSLVSISGLKQLFELGCSNSLDDETFVFTNCFKLD 951

Query: 265  R-KLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSIT 323
            +     I+  A   IQ  A  R    RE   Y         PG EIP WF+ + +GSS+T
Sbjct: 952  QDNWADILASAQLKIQHFAMGRKHYDRE--LYDETFICFTYPGTEIPEWFADKSIGSSVT 1009

Query: 324  LKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVN 383
            ++  P  + N++  GF  C +VAF D        +F CE+   +  C  +    Y G  N
Sbjct: 1010 IQHLPPDWLNHRFLGFSVCLVVAFDD--------RFLCEYPRGVVACKCNFQNSYGGCNN 1061

Query: 384  YVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLF 443
            ++     L  + +F   D + C   +C   AV            E  +   V+KCG+ L 
Sbjct: 1062 HI---FTLNSWKYFPAMDQSMC---SCGMIAVGM---------VENANFPEVEKCGVLLL 1106

Query: 444  HASDSMDSMED--PSKVFNRK------EVEEPHPKRLKYL 475
            ++ D   +  +  P++V  ++      E EEPH K++K L
Sbjct: 1107 YSKDEESNQMELVPAEVTKKRSGSSAEEKEEPHLKKMKEL 1146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 216/460 (46%), Gaps = 61/460 (13%)

Query: 42   LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 101
            L  L  + LSGCSKLK  P IS   NIE + LDGTA++ +P SI  L +L  LNL  C  
Sbjct: 704  LKSLKFVILSGCSKLKKFPTISE--NIESLYLDGTAVKRVPESIENLQKLTVLNLKKCSR 761

Query: 102  LKTLPSSLC------------------------KLKSLEEICLTGSAIEELPSPIECLSA 137
            L  LP++LC                         ++SLE + +  +AI++ P  ++ +S 
Sbjct: 762  LMHLPTTLCKLKSLKELLLSGCSKLESFPDINEDMESLEILLMDDTAIKQTPRKMD-MSN 820

Query: 138  LCVLDLGDCK--SLKSLKL-PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 194
            L +   G  K   L  L+L PF G   L+ +YLTDC + +LP+S   LS L+ L L RNN
Sbjct: 821  LKLFSFGGSKVHDLTCLELLPFSGCSRLSDMYLTDCNLYKLPDSFSCLSLLQTLCLSRNN 880

Query: 195  FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSG-----LFSS 249
             + +P SI +L  L SL + +C++L SLP LP NL +LDA  C +LE+++      + + 
Sbjct: 881  IKNLPGSIKKLHHLKSLYLKHCQQLVSLPVLPSNLQYLDAHGCISLETVAKPMTLLVVAE 940

Query: 250  YKCVFFYLNENFKLDRKLR-GIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNE 308
                 F   + FKL+R  +  IV       Q++     +   + +    L      PGN+
Sbjct: 941  RNQSTFVFTDCFKLNRDAQESIVAHTQLKSQILGNGSLQRNHKGLVSEPL-ASASFPGND 999

Query: 309  IPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLK 368
            +P+WF  Q MGSS+   + P  + ++K  G   C +V+F+D+  +   F   C+ K + +
Sbjct: 1000 LPLWFRHQRMGSSMETHLPPH-WCDDKFIGLSLCVVVSFKDYVDKTNRFSVICKCKFRNE 1058

Query: 369  DCDPHVIQRYLG--------------RVNYVEPDHLLLGYYFFNH----QDLNGCWEYNC 410
            D D       LG                  +  DH+ + Y    H     DLN      C
Sbjct: 1059 DGDCISFTCNLGGWKEQCGSSSSREEEPRKLTSDHVFISYNNCFHAKKSHDLN-----RC 1113

Query: 411  VPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMD 450
                  F F    G     LDCC V KCG+ L +A D  D
Sbjct: 1114 CNTTASFKFFVTDGVSKRKLDCCEVVKCGMSLLYAPDEND 1153

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256011|ref|NP_193686.5| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332658792|gb|AEE84192.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 237/491 (48%), Gaps = 64/491 (13%)

Query: 12   SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKI 71
            SV+   +L  + +  C      P    I+ L  L+   LSGC KLK    IS +  IE +
Sbjct: 675  SVKQMNELIYLNLRDCTSLESLPKGFKIKSLKTLI---LSGCLKLKDFHIISES--IESL 729

Query: 72   LLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELP- 129
             L+GTAIE +   I  L  L+ LNL +C+ LK LP+ L KLKSL+E+ L+G SA+E LP 
Sbjct: 730  HLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPP 789

Query: 130  --SPIECLSAL--------------CVLDLGDC--------KSLKSLKLPFDGLYSLTYL 165
                +ECL  L              C+ +L  C         S   + LPF G   L+ L
Sbjct: 790  IKEKMECLEILLMDGTSIKQTPEMSCLSNLKICSFCRPVIDDSTGLVVLPFSGNSFLSDL 849

Query: 166  YLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL 225
            YLT+C I +LP+    L SL  L L RNN E +PESI +L  L  L + +C RL+SLP L
Sbjct: 850  YLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLL 909

Query: 226  PCNLYWLDAQHCTTLESLSG-----LFSSYKCVFFYLNENFKLDRKLR-GIVEDALQNIQ 279
            P NL +LDA  C +LE++S      L +      F   + FKL++  +  IV  A    Q
Sbjct: 910  PSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQ 969

Query: 280  LMA-TARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFG 338
            L+A T+R    +  +  P +   V  PG++IP WFS Q MGS I   + P  + N+K  G
Sbjct: 970  LLARTSRHHNHKGLLLDPLVA--VCFPGHDIPSWFSHQKMGSLIETDLLPH-WCNSKFIG 1026

Query: 339  FVFCAIVAFRD---HHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYV------EP-- 387
               C +V F+D   HH    S +  C+ K K ++         LG  N        EP  
Sbjct: 1027 ASLCVVVTFKDHEGHHANRLSVR--CKSKFKSQNGQFISFSFCLGGWNESCGSSCHEPRK 1084

Query: 388  ---DHLLLGYYFFNHQDLNGCWEYN----CVPEAVQFYFKKVLGSETE-TLDCCGVKKCG 439
               DH+ + Y   N        E N    C P +  F F   L  ETE  L+CC + +CG
Sbjct: 1085 LGSDHVFISYNNCNVPVFKWSEETNEGNRCHPTSASFEF--YLTDETERKLECCEILRCG 1142

Query: 440  IHLFHASDSMD 450
            ++  +A D  D
Sbjct: 1143 MNFLYARDEND 1153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.905	0.340	0.285	1.2e-34
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.856	0.345	0.288	1.5e-29
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.654	0.257	0.315	5.9e-28
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.570	0.209	0.298	5.6e-25
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.917	0.357	0.267	5e-24
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.231	0.094	0.406	2e-22
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.861	0.336	0.268	1.2e-21
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.597	0.231	0.267	1.8e-20
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.873	0.347	0.245	4.7e-20
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.928	0.358	0.238	8.3e-20

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 134/469 (28%), Positives = 222/469 (47%)

Query:     4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
             + ++ L + +Q+   L  + +  C      P+ +L+  L  L+   LS CS+ K    I 
Sbjct:   696 TGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVG-LRTLI---LSNCSRFKEFKLI- 750

Query:    64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG- 122
              A N+E++ LDGTAI+ELPS+IG L +L+ L L DCKNL +LP S+  LK+++EI L+G 
Sbjct:   751 -AKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGC 809

Query:   123 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY-LT----DCAITXXXX 177
             S++E  P   + L  L  L L D  ++K  K+P D L+ L+    LT    +C +     
Sbjct:   810 SSLESFPEVNQNLKHLKTLLL-DGTAIK--KIP-DILHHLSPDQGLTSSQSNCHLCEWPR 865

Query:   178 XXXXXXXXXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHC 237
                            N F  +P SI            +C+ L S+P LP NL WLDA  C
Sbjct:   866 GIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGC 925

Query:   238 TTLESLSGLFSSYKCVFFYLNENFKLDR--KLRGIVEDALQN-----IQLMATARWKEIR 290
              +LE++S L         +L+  F      KL  + E+++++     IQLM+ A  +   
Sbjct:   926 ISLETISILSDPLLAETEHLHSTFIFTNCTKLYKVEENSIESYPRKKIQLMSNALAR-YE 984

Query:   291 EKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDH 350
             + ++   L G +  PG ++P WF+ + +G  +   + P  ++   + G   CA+V+F+D+
Sbjct:   985 KGLALDVLIG-ICFPGWQVPGWFNHRTVGLELKQNL-PRHWNAGGLAGIALCAVVSFKDY 1042

Query:   351 HVRDWSFKFYCEFKIKLKDCDPHVIQRYLG----RVNY----VEPDHLLLGYY-FFNHQD 401
               ++      C  + K +D         LG      +Y    ++ DH+ +GY  + N   
Sbjct:  1043 ISKNNRLLVTCSGEFKKEDKTLFQFSCILGGWTEHGSYEAREIKSDHVFIGYTSWLNFMK 1102

Query:   402 LNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMD 450
              +      CV       F+   G  T  +  C V KCG  L ++  ++D
Sbjct:  1103 SDD--SIGCVATEASLRFQVTDG--TREVTNCTVVKCGFSLIYSHTNVD 1147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 130/450 (28%), Positives = 208/450 (46%)

Query:     4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
             +++E+L   ++    L  + M  C      P  +LI  L  L++ N   CS ++    IS
Sbjct:   686 TSLEELPREMKRMKSLIFLNMRGCTSLRVLPRMNLIS-LKTLILTN---CSSIQKFQVIS 741

Query:    64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG- 122
                N+E + LDGTAI +LP+ +  L +L+ LNL DCK L  +P  L KLK+L+E+ L+G 
Sbjct:   742 D--NLETLHLDGTAIGKLPTDMVKLQKLIVLNLKDCKMLGAVPEFLGKLKALQELVLSGC 799

Query:   123 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXX 182
             S ++    PIE +  L +L L D  +LK  ++P   L       + D  +          
Sbjct:   800 SKLKTFSVPIETMKCLQILLL-DGTALK--EMP--KLLRFNSSRVED--LPELRRGINGL 852

Query:   183 XXXXXXXXXRNNF-ERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLE 241
                      RNN    +   I +          YC+ L S+P LP NL  LDA  C  L+
Sbjct:   853 SSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLK 912

Query:   242 SLSG------LFSSYKCVFFYLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIREKIS 294
             +++       L    +  F + N N  L++  +  I   A +  QL A   +KE    +S
Sbjct:   913 TVASPMALLKLMEQVQSKFIFTNCN-NLEQVAKNSITSYAQRKSQLDARRCYKE--GGVS 969

Query:   295 YPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRD--HHV 352
               AL      PG+++P WF+ Q  GS++ LK+ P  + +N++     CA+V F D    +
Sbjct:   970 -EALF-IACFPGSDVPSWFNYQTFGSALRLKLPPH-WCDNRLSTIALCAVVTFPDTQDEI 1026

Query:   353 RDWSFKFYCEFKIKLKDCDPHVIQRYLG----RVNYVEPDHLLLGYYFFNH--QDLNGCW 406
               +S +  CEFK +L  C        LG        ++ DH+ +GY   +H  + L G  
Sbjct:  1027 NRFSIECTCEFKNELGTCIRFSCT--LGGSWIESRKIDSDHVFIGYTSSSHITKHLEGSL 1084

Query:   407 ---EYN-CVPEAVQFYFKKVLGSETETLDC 432
                E++ CVP      F+ + G+  E ++C
Sbjct:  1085 KLKEHDKCVPTEASIEFEVIDGAG-EIVNC 1113

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 5.9e-28, P = 5.9e-28
 Identities = 105/333 (31%), Positives = 159/333 (47%)

Query:    48 LNLSGCSKLKSLPEISSAGNIEKILLDGTA-IEELPSSIGCLSRLLELNLGDCKNLKTLP 106
             L+L G +  + +  I S  ++  + L     ++ LP+ +  L  L EL L  C  L++LP
Sbjct:   729 LHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLP 788

Query:   107 SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK-----SLKSLKLPFDGLYS 161
                 K++ LE + + G++I++ P  + CLS L +     C+     S   + LPF G   
Sbjct:   789 PIKEKMECLEILLMDGTSIKQTPE-MSCLSNLKICSF--CRPVIDDSTGLVVLPFSGNSF 845

Query:   162 LTYLYLTDCAITXXXXXXXXXXXXXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQS 221
             L+ LYLT+C I                   RNN E +PESI +          +C RL+S
Sbjct:   846 LSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKS 905

Query:   222 LPKLPCNLYWLDAQHCTTLESLSG-----LFSSYKCVFFYLNENFKLDR-KLRGIVEDAL 275
             LP LP NL +LDA  C +LE++S      L +      F   + FKL++ +   IV  A 
Sbjct:   906 LPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQ 965

Query:   276 QNIQLMA-TARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNN 334
                QL+A T+R    +  +  P +   V  PG++IP WFS Q MGS I   + P  + N+
Sbjct:   966 LKSQLLARTSRHHNHKGLLLDPLVA--VCFPGHDIPSWFSHQKMGSLIETDLLPH-WCNS 1022

Query:   335 KVFGFVFCAIVAFRDH---HVRDWSFKFYCEFK 364
             K  G   C +V F+DH   H    S +   +FK
Sbjct:  1023 KFIGASLCVVVTFKDHEGHHANRLSVRCKSKFK 1055

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 90/302 (29%), Positives = 144/302 (47%)

Query:    36 PSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAI-EELPSSIGC--LSRL 91
             P+ I +L++L  L++S   +L SLP  IS   ++EK+ L G ++ E  P  I C  +S L
Sbjct:   824 PARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLEI-CQTMSCL 882

Query:    92 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC----- 146
                +L D  ++K LP ++  L +LE +  + + I   P  I  L+ L VL +G+      
Sbjct:   883 RWFDL-DRTSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPE 941

Query:   147 KSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRNNFERIPESIIRXX 206
               L SL  P      L  L L++  +T                   NNFE IP SI R  
Sbjct:   942 GLLHSLCPPLSRFDDLRALSLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLT 1001

Query:   207 XXXXXXXXYCERLQSLP-KLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN-FKLD 264
                      C+RLQ+LP +LP  L ++    CT+L S+SG F+ Y C+   +  N +KLD
Sbjct:  1002 RLNRLNLNNCQRLQALPDELPRGLLYIYIHSCTSLVSISGCFNQY-CLRKLVASNCYKLD 1060

Query:   265 RKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITL 324
             +  + ++    +N++L +              A   H   PG++IP  F+ Q MG S+ +
Sbjct:  1061 QAAQILIH---RNLKLES--------------AKPEHSYFPGSDIPTCFNHQVMGPSLNI 1103

Query:   325 KM 326
             ++
Sbjct:  1104 QL 1105

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.0e-24, P = 5.0e-24
 Identities = 127/475 (26%), Positives = 205/475 (43%)

Query:     4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-I 62
             +++  L + ++    L  +I++ C+   K P   LI   N  V+L L G + +KSLPE I
Sbjct:   701 TSLRSLPKGIKTQS-LQTLILSGCSSLKKFP---LISE-NVEVLL-LDG-TVIKSLPESI 753

Query:    63 SSAGNIEKILLDGTA-IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLT 121
              +   +  + L     ++ L S +  L  L EL L  C  L+  P     ++SLE + + 
Sbjct:   754 QTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMD 813

Query:   122 GSAIEELPSPIECLSALCVLDLGDCKSLKSLKL----PFDGLYSLTYLYLTDCAITXXXX 177
              ++I E+P  +  LS +    L    S  S+ +    P  G   LT LYL+ C++     
Sbjct:   814 DTSITEMPKMMH-LSNIKTFSLCGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPD 872

Query:   178 XXXXXXXXXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHC 237
                            NN E +PES  +          +C+ L+SLP LP NL +LDA  C
Sbjct:   873 NIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHEC 932

Query:   238 TTLESLSGLFSSYKC-----VFFYLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIRE 291
              +LE+L+   +           F  +  +KL++  +  +V  A    QLMA A  K    
Sbjct:   933 ESLETLANPLTPLTVGERIHSMFIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRYYR 992

Query:   292 KISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHH 351
                   L G +  P  EIP WF  Q +G S+ + + P     N V G     +V+F+D+ 
Sbjct:   993 GFVPEPLVG-ICYPATEIPSWFCHQRLGRSLEIPLPPHWCDINFV-GLALSVVVSFKDYE 1050

Query:   352 VRDWSFKFYCEFKIKLKDCD----PHVIQRY---LGRVNY----VEPDHLLLGYYF-FNH 399
                  F   C    + KD         +  +    G +++    +  DH+ +GY   F  
Sbjct:  1051 DSAKRFSVKCCGNFENKDSSFTRFDFTLAGWNEPCGSLSHESRKLTSDHVFMGYNSCFLV 1110

Query:   400 QDLNGCWEYN-CVPEAVQFYFKKVLGSET-ETLDCCGVKKCGIHLFHASDSMDSM 452
             ++++G  E N C      F F  V   ET + ++ C V KCG+ L +  +  D M
Sbjct:  1111 KNVHG--ESNSCCYTKASFEFY-VTDDETRKKIETCEVIKCGMSLMYVPEDDDCM 1162

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
 Identities = 48/118 (40%), Positives = 74/118 (62%)

Query:    42 LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 101
             ++ L IL LS CSKL+    IS   N+E++ LDGTAI+ LP + G L+RL+ LN+  C  
Sbjct:   769 VSSLKILILSDCSKLEEFEVISE--NLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTE 826

Query:   102 LKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECLSALCVLDLGDCK-----SLKSLK 153
             L++LP  L K K+L+E+ L+G S +E +P+ ++ +  L +L L   +      +KSLK
Sbjct:   827 LESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLK 884

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 121/451 (26%), Positives = 190/451 (42%)

Query:    18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-T 76
             KL ++ +  C      P+   ++ +  L  LNL GC+ L+SLPE++   +++ + L G +
Sbjct:   684 KLQRLNLEGCTTLKAFPHD--MKKMKMLAFLNLKGCTSLESLPEMNLI-SLKTLTLSGCS 740

Query:    77 AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPSPIECL 135
               +E P     +S  +E    D   +  LP ++ KL+ L  + +     +EE+P  +  L
Sbjct:   741 TFKEFP----LISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGEL 796

Query:   136 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXXXXXXXXXRN-N 194
              AL  L L DC +LK    P   +  L  L L   AI                   RN  
Sbjct:   797 KALQELILSDCLNLKIF--PEIDISFLNILLLDGTAIEVMPQLPSVQYLCLS----RNAK 850

Query:   195 FERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYK--- 251
                +P  I +          YC  L S+P+ P NL  LDA  C++L+++S   +      
Sbjct:   851 ISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTE 910

Query:   252 ---CVFFYLN-ENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGN 307
                  F + N EN +   K   I   A +  QL++ AR K     +   +L      PG 
Sbjct:   911 QNHSTFIFTNCENLEQAAK-EEITSYAQRKCQLLSYAR-KRYNGGLVSESLFS-TCFPGC 967

Query:   308 EIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKL 367
             E+P WF  + +GS + +K+ P  + + K+ G   CA+V+  D   +       C FK+K 
Sbjct:   968 EVPSWFCHETVGSELEVKLLPH-WHDKKLAGIALCAVVSCLDPQDQVSRLSVTCTFKVKD 1026

Query:   368 KD-------CDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYN----CVPEAVQ 416
             +D       C      R+ G  + +E DH+ +GY    H     C E      C P    
Sbjct:  1027 EDKSWVAYTCPVGSWTRHGGGKDKIELDHVFIGYTSCPHTIK--CHEEGNSDECNPTEAS 1084

Query:   417 FYFKKVLGSETETLDCCGVKKCGIHLFHASD 447
               F  V G  +E      V KCG+ L +A D
Sbjct:  1085 LKFT-VTGGTSEN-GKYKVLKCGLSLVYAKD 1113

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
 Identities = 82/306 (26%), Positives = 144/306 (47%)

Query:     1 MPHSNIEQLSESVQHHG--KLNQIIMA-ACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK 57
             +PHS IE++    +H    KL  + ++ + N++    + S +    +LV LNL GC+ LK
Sbjct:   636 LPHSKIERIWSDDKHKDTPKLKWVNLSHSSNLW----DISGLSKAQRLVFLNLKGCTSLK 691

Query:    58 SLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE 117
             SLPEI+   ++E ++L   +   L      +S+ LE    D  ++K LP +   L+ L  
Sbjct:   692 SLPEINLV-SLEILILSNCS--NL-KEFRVISQNLETLYLDGTSIKELPLNFNILQRLVI 747

Query:   118 ICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXX 176
             + + G A ++E P  ++ L AL  L L DC  L++     + +  L  L L    IT   
Sbjct:   748 LNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQNFPAICERIKVLEILRLDTTTITEIP 807

Query:   177 XXXXXXXXXXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQH 236
                             ++   +P++I +          YC+ L S+PKLP NL  LDA  
Sbjct:   808 MISSLQCLCLSK---NDHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAHG 864

Query:   237 CTTLESLSG---LFSSYKCVF--FYLNENFKLDRKLRGIVED-ALQNIQLMATARWK-EI 289
             C +L+++S      ++ + ++  F L    KL+R  +  +   A +  QL+  A+ +  +
Sbjct:   865 CCSLKTVSNPLACLTTAQQIYSTFILTNCNKLERSAKEEISSFAQRKCQLLLDAQKRCNV 924

Query:   290 REKISY 295
                IS+
Sbjct:   925 SSLISF 930

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.7e-20, P = 4.7e-20
 Identities = 112/457 (24%), Positives = 193/457 (42%)

Query:     6 IEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA 65
             ++ L + +Q    L  + +  C      P   L + L  L+   LS C   +  P IS  
Sbjct:   717 LKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKL-KSLKTLI---LSHCKNFEQFPVISEC 772

Query:    66 GNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SA 124
               +E + L GTAI+ +P+SI  L +L+ L+L DC+ L +LP  L  L+SL+E+ L+G S 
Sbjct:   773 --LEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSK 830

Query:   125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXXXX 184
             ++  P   E + ++ +L L D  ++K + +    + S  +  + +  +            
Sbjct:   831 LKFFPELKETMKSIKILLL-DGTAIKQMPILLQCIQSQGHS-VANKTLPNSLSDYYLPSS 888

Query:   185 XXXXXXXRNNFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTLES-- 242
                     N+ E +  +I +           C++L+S+  LP NL  LDA  C +LE   
Sbjct:   889 LLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVG 948

Query:   243 --LSGLFSSYK--CVFFYLNENFKLDRKLRG-IVEDALQNIQLMATARWKEIREKISYPA 297
               L+ L  + K  C + + N N KLD+     I+    +  Q+M+ A            +
Sbjct:   949 SPLAVLMVTGKIHCTYIFTNCN-KLDQVAESNIISFTWRKSQMMSDAL-NRYNGGFVLES 1006

Query:   298 LQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRD--HHVRDW 355
             L      PG E+P  F  Q  G+ +  K+ P  + ++++ G   CA++ F D  H    +
Sbjct:  1007 LVS-TCFPGCEVPASFDHQAYGALLQTKL-PRHWCDSRLTGIALCAVILFPDYQHQSNRF 1064

Query:   356 SFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLNGCWEYNCVPEAV 415
               K  CEF  +   C        +G +N               H + +G     C+P   
Sbjct:  1065 LVKCTCEFGTEDGPCIS--FSSIVGDINK-------------RHVEKHG---NGCIPSKA 1106

Query:   416 QFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSM 452
                F+   G+    +  C V KCG  L +  +  D +
Sbjct:  1107 SLRFQVTDGASE--VGNCHVLKCGFTLVYTPNDSDDI 1141

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 114/478 (23%), Positives = 206/478 (43%)

Query:     4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
             SN+  L   +     L ++ +  C    + P+   ++ +  LV LNL GC+ L SLP+I+
Sbjct:   669 SNLNSLM-GLSEAPNLLRLNLEGCTSLKELPDE--MKDMTNLVFLNLRGCTSLLSLPKIT 725

Query:    64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS 123
             +  +++ ++L G +  +   +   +S  LE    +   +  LP ++  L  L  + L   
Sbjct:   726 T-NSLKTLILSGCSSFQ---TFEVISEHLESLYLNGTEINGLPPAIGNLHRLIFLNLKDC 781

Query:   124 A-IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITXXXXXXXXX 182
               +  LP  +  L +L  L L  C  LK        + SL  L L   +I          
Sbjct:   782 KNLATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLLLDGTSIAELPCSIFHL 841

Query:   183 XXXXXXXXXRN-NFERIPESIIRXXXXXXXXXXYCERLQSLPKLPCNLYWLDAQHCTTL- 240
                      RN N   +   +            YC+ L SLP LP NL  L+A  CT+L 
Sbjct:   842 SSLRRLCLSRNDNIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNLQCLNAHGCTSLR 901

Query:   241 -----ESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQN-IQLMATARWKEIREKIS 294
                  ++L          F + N + +L++  +  +   +Q   +LM+  R+        
Sbjct:   902 TVASPQTLPTPTEQIHSTFIFTNCH-ELEQVSKNAIISYVQKKSKLMSADRYSP---DFV 957

Query:   295 YPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAIVAFRDHHVRD 354
             Y +L G    PG EIP WF+ Q +GS + L++ P  ++++++ G   C +V+F+++  ++
Sbjct:   958 YKSLIG-TCFPGCEIPAWFNHQALGSVLILEL-PQAWNSSRIIGIALCVVVSFKEYRDQN 1015

Query:   355 WSFKFYC--EF-KIKLKDCDPHVIQRYLGR---VNYVEPDHLLLGYYFFNHQDLNGCWEY 408
              S +  C  EF  + L   +  ++  +  +    + VE DH+ +GY      ++    ++
Sbjct:  1016 SSLQVQCTCEFTNVSLSQ-ESFMVGGWSEQGDETHTVESDHIFIGYTTL--LNIKNRQQF 1072

Query:   409 NCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSMDSM---EDPSKVFNRKE 463
                 E +   F+   G  T  ++ C V KCG  L +  +  DS    E P    NR++
Sbjct:  1073 PLATE-ISLRFQVTNG--TSEVEKCKVIKCGFSLVYEPNEADSTSWKETPRMEDNRQD 1127

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0008_340 annotation not avaliable (1184 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	475
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-23
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  101 bits (254), Expect = 8e-23
 Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 48/385 (12%)

Query: 4    SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
            S++ +L  S+Q+  KL  + M+ C      P    ++ L +L   NLSGCS+LKS P+IS
Sbjct: 668  SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL---NLSGCSRLKSFPDIS 724

Query: 64   SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN-------------LKTLPSSLC 110
            +  NI  + LD TAIEE PS++  L  L EL L + K+             +  L  SL 
Sbjct: 725  T--NISWLDLDETAIEEFPSNLR-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781

Query: 111  KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSLTYLYLT 168
            +L  L +I     ++ ELPS I+ L  L  L++ +C +L++L   +  + L SL    L+
Sbjct: 782  RL-FLSDI----PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD---LS 833

Query: 169  DCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ----SLPK 224
             C  + L     + +++ +L L R   E +P  I + S LS L ++ C  LQ    ++ K
Sbjct: 834  GC--SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891

Query: 225  LPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATA 284
            L  +L  +D   C  L   S   S  +      N + KL   +     +   N+   A  
Sbjct: 892  LK-HLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF-NLDQEALL 949

Query: 285  RWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFVFCAI 344
            + + I +++         +L G E+P +F+ +  G+S+T             F F  CA+
Sbjct: 950  QQQSIFKQL---------ILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAV 1000

Query: 345  VAFRDHHVRDWSFKFY--CEFKIKL 367
            V      +   SF     C F  +L
Sbjct: 1001 VDSESFFIISVSFDIQVCCRFIDRL 1025

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 27/210 (12%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSG--CSKLKSLPEISSAGNIEKILLDGTAIEELPSS 84
            N+     N S +  L  L  L+L     + +  L  +  + N++++ L    IE LPS 
Sbjct: 100 LNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIESLPSP 158

Query: 85  IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLG 144
           +  L  L  L+L    +L  LP  L  L +L  + L+G+ I +LP  IE LSAL  LDL 
Sbjct: 159 LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217

Query: 145 ----------------------DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLL 182
                                     L+ L      L +L  L L++  I+ +  SLG L
Sbjct: 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSL 276

Query: 183 SSLEELYLERNNFERIPESIIRLSKLSSLL 212
           ++L EL L  N+       I  L  L  LL
Sbjct: 277 TNLRELDLSGNSLSNALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 24/190 (12%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
           PS +  L  L +L+ SG S L     + +   +  + L+   +    S +  L+ L  L+
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
           L +  N+  +P  +  LKS                       L  LDL D   ++SL  P
Sbjct: 123 LDN-NNITDIPPLIGLLKS----------------------NLKELDLSD-NKIESLPSP 158

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
              L +L  L L+   +++LP+ L  LS+L  L L  N    +P  I  LS L  L +S 
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218

Query: 216 CERLQSLPKL 225
              ++ L  L
Sbjct: 219 NSIIELLSSL 228

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 90  RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 149
           RLL     D   L+ +PS+  + ++L ++ + GS +E+L   +  L+ L  +DL   K+L
Sbjct: 592 RLLRW---DKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647

Query: 150 KSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLER-NNFERIPESIIRLSK 207
           K +        +L  L L+DC+ + ELP S+  L+ LE+L + R  N E +P  I  L  
Sbjct: 648 KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705

Query: 208 LSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 246
           L  L +S C RL+S P +  N+ WLD       E  S L
Sbjct: 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 27/185 (14%)

Query: 45  LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLK 103
           L  LNLS  +   S+P   S  N+E + L    +  E+P+ IG  S L  L+LG    + 
Sbjct: 120 LRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 104 TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKLPFD----- 157
            +P+SL  L SLE + L  +  + ++P            +LG  KSLK + L ++     
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPR-----------ELGQMKSLKWIYLGYNNLSGE 227

Query: 158 ------GLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLS 209
                 GL SL +L L    +T  +P SLG L +L+ L+L +N     IP SI  L KL 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 210 SLLVS 214
           SL +S
Sbjct: 288 SLDLS 292

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 9/212 (4%)

Query: 1   MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP 60
           +  +++  L + + +   LN + ++   I   +  P  I+ L+ L  L+LS  S ++ L 
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNKI---SDLPPEIELLSALEELDLSNNSIIELLS 226

Query: 61  EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120
            +S+  N+  + L    +E+LP SIG LS L  L+L    N  +  SSL  L +L E+ L
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS--NNQISSISSLGSLTNLRELDL 284

Query: 121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL-YSLTYLYLTDCAITELPESL 179
           +G+++      I   + L +L       L +LK     L   L    +     T  PE+L
Sbjct: 285 SGNSLSNALPLI---ALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Query: 180 GLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
            +L SL  L+   N  +    +   +   +++
Sbjct: 342 SILESLNNLWTLDNALDESNLNRYIVKNPNAI 373

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 161 SLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYC 216
           +L  L L++  +T +P  +   L +L+ L L  NN   I PE+   L  L SL +S  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 140 VLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNF 195
            LDL + + L  +    F GL +L  L L+   +T + PE+   L SL  L L  NN 
Sbjct: 4   SLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 38  LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL- 96
           L  H+  LVI +    + L SLP +     +  + + G  +  LP        LLEL++ 
Sbjct: 220 LPAHITTLVIPD----NNLTSLPALPP--ELRTLEVSGNQLTSLPV---LPPGLLELSIF 270

Query: 97  -GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 154
                +L  LPS LCKL       + G+ +  LP     L  L V D      L SL  L
Sbjct: 271 SNPLTHLPALPSGLCKL------WIFGNQLTSLPVLPPGLQELSVSD----NQLASLPAL 320

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 214
           P +    L  L+  +  +T LP    L S L+EL +  N    +P     L KL +    
Sbjct: 321 PSE----LCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASLPTLPSELYKLWA---- 369

Query: 215 YCERLQSLPKLPCNL 229
           Y  RL SLP LP  L
Sbjct: 370 YNNRLTSLPALPSGL 384

Length = 788

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 200
           +L  L L++  IT+LP  L  L +LE L L  N    +  
Sbjct: 2   NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 25/100 (25%)

Query: 105 LPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 163
           +P+ + KL+ L+ I L+G++I   +P  +  +++L VLDL    S  S    F+G     
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL----SYNS----FNGS---- 481

Query: 164 YLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESI 202
                      +PESLG L+SL  L L  N+   R+P ++
Sbjct: 482 -----------IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.43
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PRK15386	426	type III secretion protein GogB; Provisional	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PRK15386	426	type III secretion protein GogB; Provisional	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.59
PLN03150	623	hypothetical protein; Provisional	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.47
PLN03150	623	hypothetical protein; Provisional	98.45
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.24
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG4341	483	consensus F-box protein containing LRR [General fu	98.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.54
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.88
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.43
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	94.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.56
KOG4308	478	consensus LRR-containing protein [Function unknown	88.98
smart00370	26	LRR Leucine-rich repeats, outliers.	88.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.58
smart00370	26	LRR Leucine-rich repeats, outliers.	85.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.0

>PLN03210 Resistant to P

Probab=100.00  E-value=5.5e-42  Score=388.97  Aligned_cols=404  Identities=26%  Similarity=0.373  Sum_probs=290.1

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEcccc-CC
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AI   78 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~-~i   78 (475)
                      |++|+|+++|++++.+++|+.|+|++|..++.+|+   ++.+++|+.|+|++|..+..+|. +..+++|+.|++++| .+
T Consensus       618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             CcCccccccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            57899999999999999999999999999999986   56789999999999999999998 889999999999986 67


Q ss_pred             cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--------------------------------
Q 011891           79 EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--------------------------------  126 (475)
Q Consensus        79 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--------------------------------  126 (475)
                      +.+|..+ ++++|++|++++|..+..+|..   ..+|++|++++|.++                                
T Consensus       695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             CccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence            7888866 7899999999999877776643   223444444444433                                


Q ss_pred             ----------------------cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC-CCcchhhCCCC
Q 011891          127 ----------------------ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI-TELPESLGLLS  183 (475)
Q Consensus       127 ----------------------~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l-~~lp~~l~~l~  183 (475)
                                            ++|.+++++++|+.|++++|..++.+|... ++++|+.|++++|.. ..+|.   ..+
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~  846 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---IST  846 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---ccc
Confidence                                  455555556666666666666666555443 456666666666532 23443   245


Q ss_pred             CCceeEeccCCccccchHHhhcCCcccccccccccccccCCCc---cCcceecccccccCccccCCCCCc----------
Q 011891          184 SLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQHCTTLESLSGLFSSY----------  250 (475)
Q Consensus       184 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~---~~L~~L~i~~c~~L~~l~~~~~~~----------  250 (475)
                      +|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+   .+|+.+++.+|.+|+.++......          
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~  926 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH  926 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence            7888888888999999999999999999999999999998654   567788999999998775431110          


Q ss_pred             ----ceeEEEecCCccchHHHHHhHHHHHHHHHHHHHHHHHHHhhccCcCccceEEEecCCCCCccccccCCCceEE-EE
Q 011891          251 ----KCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSIT-LK  325 (475)
Q Consensus       251 ----~~~~l~~~~c~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sv~-~~  325 (475)
                          ....+.|.+|+++++.+..      +.             +     .....+++||.++|+||.||+.|++++ |.
T Consensus       927 ~~~p~~~~l~f~nC~~L~~~a~l------~~-------------~-----~~~~~~~l~g~evp~~f~hr~~g~sl~~i~  982 (1153)
T PLN03210        927 SKLPSTVCINFINCFNLDQEALL------QQ-------------Q-----SIFKQLILSGEEVPSYFTHRTTGASLTNIP  982 (1153)
T ss_pred             ccCCchhccccccccCCCchhhh------cc-------------c-----ccceEEECCCccCchhccCCcccceeeeec
Confidence                0123568899998876521      00             0     112367899999999999999999998 99


Q ss_pred             cCCCCCCCCceeeEEEEEEEEeeCCC--CCCceeEEEEEEeecCCCCCcceeeeeeCCCCccCCCeEEEEeeeccccccC
Q 011891          326 MQPGCFSNNKVFGFVFCAIVAFRDHH--VRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQDLN  403 (475)
Q Consensus       326 lp~~~~~~~~~~gfa~c~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~~~~~~~  403 (475)
                      +|+.|+ ...|.||++|+|+++....  ...+.++|.|+|++..++..... ............+|+++   |.+..+..
T Consensus       983 l~~~~~-~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~~~~ 1057 (1153)
T PLN03210        983 LLHISP-CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSP-YQPHVFSVTKKGSHLVI---FDCCFPLN 1057 (1153)
T ss_pred             cCCccc-CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccC-CCceeEeeeccccceEE---eccccccc
Confidence            999998 7889999999999887732  23678899999998876653220 00000011233455555   33222221


Q ss_pred             CCCC--CCcCCeeEEEEEEEecCCCCcccCceeEEEeccEEEecCCCC
Q 011891          404 GCWE--YNCVPEAVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSM  449 (475)
Q Consensus       404 ~~~~--~~~~~~~~~f~f~~~~~~~~~~~~~~~vk~cGv~l~~~~~~~  449 (475)
                      .-..  ..+.+++|+++|+.....     ..++||+|||+++|+.+..
T Consensus      1058 ~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1058 EDNAPLAELNYDHVDIQFRLTNKN-----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             ccccchhccCCceeeEEEEEecCC-----CCeEEEeeeEEEeccCCCc
Confidence            1111  113445688888766422     2379999999999965544

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=3.5e-21  Score=217.94  Aligned_cols=205  Identities=29%  Similarity=0.397  Sum_probs=96.7

Q ss_pred             ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc-ccCcccCCCC
Q 011891           11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPSSIGCLS   89 (475)
Q Consensus        11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~   89 (475)
                      ..+..+++|+.|+|++|..-..+|. ..+.++++|++|+|++|...+.+|. +.+++|++|+|++|.+. .+|..+++++
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPD-DIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCCh-HHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCC
Confidence            4455666666666666543334443 2233555556666555443333332 23445555555555444 3444445555


Q ss_pred             CCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEec
Q 011891           90 RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT  168 (475)
Q Consensus        90 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~  168 (475)
                      +|++|++++|.....+|..++++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..++++++|+.|+++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            5555555554444444444444555555555544443 344444444444444444444433444444444444444444


Q ss_pred             CCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccc
Q 011891          169 DCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       169 ~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +|+++. +|..++.+++|+.|++++|++. .+|..+..+++|+.|++++|.
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            444442 4444444444444444444442 334444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=3.3e-21  Score=218.14  Aligned_cols=213  Identities=25%  Similarity=0.326  Sum_probs=123.0

Q ss_pred             cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc-ccCccc
Q 011891            8 QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSI   85 (475)
Q Consensus         8 ~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~-~lp~~i   85 (475)
                      .+|..++.+++|++|+|++|.....+|.  .+.++++|++|+|++|.....+|. ++.+++|++|++++|.+. .+|..+
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  232 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI  232 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence            3445555666666666665544334442  345556666666666554445554 555666666666666555 455556


Q ss_pred             CCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCE
Q 011891           86 GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY  164 (475)
Q Consensus        86 ~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~  164 (475)
                      +++++|++|++++|.....+|..++++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+.++++|+.
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            66666666666665555555655666666666666666554 45555556666666666666554455555555666666


Q ss_pred             EEecCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCccccccccccccccc
Q 011891          165 LYLTDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSL  222 (475)
Q Consensus       165 L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~l  222 (475)
                      |++++|.+++ +|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|+....+
T Consensus       313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence            6666665554 5555566666666666666654 45555666666666666655433333

>PLN03210 Resistant to P

Probab=99.85  E-value=1.1e-19  Score=207.21  Aligned_cols=253  Identities=30%  Similarity=0.477  Sum_probs=170.7

Q ss_pred             CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEcccc-CCcccC
Q 011891            4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELP   82 (475)
Q Consensus         4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~-~i~~lp   82 (475)
                      +.++.+|..+ .+.+|+.|+|.+|. +..++.  ++..+++|+.|+|++|..++.+|.++.+++|++|+|++| .+..+|
T Consensus       599 ~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        599 YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD--GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             CCCCCCCCcC-CccCCcEEECcCcc-cccccc--ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc
Confidence            4455566555 35677888887753 555553  456788888888888888888888888888888888876 466788


Q ss_pred             cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcC-CccCCcccCCCCCcCEEEcCCCCCCCccccCC-----
Q 011891           83 SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLKLPF-----  156 (475)
Q Consensus        83 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~-----  156 (475)
                      .+++++++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|..   ..+|+.|+++++. +..+|..+     
T Consensus       675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L  749 (1153)
T PLN03210        675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENL  749 (1153)
T ss_pred             hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccccccccccccc
Confidence            888888888888888888888888765 68888888888774 3344432   3456666666655 33333211     


Q ss_pred             -------------------------CCCCCCCEEEecCCC-CCCcchhhCCCCCCceeEeccC-CccccchHHhhcCCcc
Q 011891          157 -------------------------DGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERN-NFERIPESIIRLSKLS  209 (475)
Q Consensus       157 -------------------------~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~  209 (475)
                                               ...++|+.|++++|. +.++|..++.+++|+.|+|++| +++.+|..+ .+++|+
T Consensus       750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~  828 (1153)
T PLN03210        750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE  828 (1153)
T ss_pred             ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccC
Confidence                                     112467777777774 4447877888888888888876 466777655 677888


Q ss_pred             cccccccccccccCCCc-----------------------cCcceecccccccCccccCCCCCc-ceeEEEecCCccchH
Q 011891          210 SLLVSYCERLQSLPKLP-----------------------CNLYWLDAQHCTTLESLSGLFSSY-KCVFFYLNENFKLDR  265 (475)
Q Consensus       210 ~L~l~~c~~l~~lp~l~-----------------------~~L~~L~i~~c~~L~~l~~~~~~~-~~~~l~~~~c~~l~~  265 (475)
                      .|++++|..++.+|..+                       ++|+.|++.+|.+|+.++...... ....+.+.+|.++..
T Consensus       829 ~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        829 SLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             EEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            88888887776665443                       345555566666666665532222 234466777777654


Q ss_pred             H
Q 011891          266 K  266 (475)
Q Consensus       266 ~  266 (475)
                      .
T Consensus       909 ~  909 (1153)
T PLN03210        909 A  909 (1153)
T ss_pred             c
Confidence            3

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=5.9e-23  Score=205.15  Aligned_cols=241  Identities=27%  Similarity=0.399  Sum_probs=162.7

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC-
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI-   78 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i-   78 (475)
                      |+||+++++|.++.+-+++-+|+||++ ++..+|. +.+.++..|-.|||++ +.+..+|. +..+.+|++|.|++|.+ 
T Consensus       110 LShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn-~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  110 LSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPN-SLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cchhhhhhcchhhhhhcCcEEEEcccC-ccccCCc-hHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            456666666666666666666666663 4555554 2344555566666665 34555554 33333333333333321 


Q ss_pred             -------------------------cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccC
Q 011891           79 -------------------------EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE  133 (475)
Q Consensus        79 -------------------------~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~  133 (475)
                                               ..+|.++..+.+|..++++. +++..+|+.+.++++|+.|++++|.|+++...++
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~  265 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG  265 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHH
Confidence                                     13445555555666666654 3455666666666666666776666666666666


Q ss_pred             CCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC--CcchhhCCCCCCceeEeccCCccccchHHhhcCCcccc
Q 011891          134 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL  211 (475)
Q Consensus       134 ~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L  211 (475)
                      .+.+|+.|+++.|+ +..+|..+.+++.|+.|++.+|+++  .+|..++.+..|+.+..++|++.-+|..+..|.+|+.|
T Consensus       266 ~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  266 EWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             HHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence            66667777777665 5667777788888888888888766  38888889999999999999999899999999999999


Q ss_pred             cccccccccccCC---CccCcceecccccccCccccCCC
Q 011891          212 LVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLF  247 (475)
Q Consensus       212 ~l~~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~~~  247 (475)
                      .+++| .|-.+|+   +.+.|+.||++..++|.--|.+.
T Consensus       345 ~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~  382 (1255)
T KOG0444|consen  345 KLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN  382 (1255)
T ss_pred             ccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence            99876 5566775   56889999999999997655543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=5.4e-22  Score=198.35  Aligned_cols=201  Identities=23%  Similarity=0.324  Sum_probs=129.1

Q ss_pred             cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCcccCCCC
Q 011891           12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLS   89 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~i~~l~   89 (475)
                      .+-++..|..||||+ +.+++.|.  .+..-+++-+|+|++ +++..+|.  +.++..|-.|+|++|++..+|+.+..+.
T Consensus        98 diF~l~dLt~lDLSh-NqL~EvP~--~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSH-NQLREVPT--NLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             hhcccccceeeecch-hhhhhcch--hhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            333444444444444 23444442  333344444444444 33444444  3344455555555555555555555555


Q ss_pred             CCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891           90 RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL  167 (475)
Q Consensus        90 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L  167 (475)
                      .|++|.|++|+..-.--..+..+++|++|.+++++-+  .+|.++..+.+|..+|++.|. +..+|..+.++++|+.|+|
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNL  252 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNL  252 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheecc
Confidence            5555555554422111111223455566666666544  678888888899999998765 6677888888999999999


Q ss_pred             cCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          168 TDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       168 ~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      ++|.|+++....+...+|++|++++|+++.+|..+.++++|+.|.+.+|+
T Consensus       253 S~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  253 SGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             CcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence            99999998777788889999999999999999999999999999888775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=8.7e-21  Score=181.28  Aligned_cols=236  Identities=30%  Similarity=0.411  Sum_probs=193.5

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      +.+|.++.+.+.+.++..|.+|++.++ .+...|.  .++.+..++.|+.++ +++..+|+ ++.+.+|+.|+++.|.+.
T Consensus        52 ls~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~--aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   52 LSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPA--AIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNELK  127 (565)
T ss_pred             hccCchhhccHhhhcccceeEEEeccc-hhhhCCH--HHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccccee
Confidence            467889999999999999999999995 4556653  577888888999998 56777887 889999999999999999


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL  159 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l  159 (475)
                      ++|++++.+..|..|+..+ +.+.++|+.++.+.+|..|++.+|.++++|+....++.|++||...|- ++.+|..++++
T Consensus       128 el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l  205 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGL  205 (565)
T ss_pred             ecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcch
Confidence            9999999999999998887 457788888888888889999999999888877778889998877654 77888888889


Q ss_pred             CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHh-hcCCcccccccccccccccCC---CccCcceeccc
Q 011891          160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQ  235 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~  235 (475)
                      .+|+.|+|..|.+..+| .+..++.|++|+++.|.++.+|+.+. ++++|..||+++| +++++|.   +..+|++||++
T Consensus       206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhccc
Confidence            99999999999988888 67888888888888888888886655 7888888888886 5677775   35677788887


Q ss_pred             ccccCccccC
Q 011891          236 HCTTLESLSG  245 (475)
Q Consensus       236 ~c~~L~~l~~  245 (475)
                      +. .+..++.
T Consensus       284 NN-~is~Lp~  292 (565)
T KOG0472|consen  284 NN-DISSLPY  292 (565)
T ss_pred             CC-ccccCCc
Confidence            63 3555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.70  E-value=4.7e-18  Score=169.40  Aligned_cols=199  Identities=23%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             CCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcc-ccc----------
Q 011891           43 NKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTL-PSS----------  108 (475)
Q Consensus        43 ~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l-p~~----------  108 (475)
                      .++++|+|++| .++.+..  |..+.+|..|.|+.|+++.+|. .+.+|++|+.|+|..|. ++.. -..          
T Consensus       173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhh
Confidence            34555555552 3333332  4455566666666666666654 34446666666665542 1111 011          


Q ss_pred             --------------cCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891          109 --------------LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus       109 --------------l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~  173 (475)
                                    +..+.++++|++..|+++++.. ++.+++.|+.|++++|..-+.-+..++-+++|+.|+|+.|+|+
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence                          2233444555555555554433 3455666666666666655544555566677777777777777


Q ss_pred             Cc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccC------CCccCcceecccccccCcccc
Q 011891          174 EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP------KLPCNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       174 ~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp------~l~~~L~~L~i~~c~~L~~l~  244 (475)
                      ++ +..+..+..|+.|+|++|.+..+. ..+..+++|+.|+|++|..-..+.      .-.++|+.|++.|. +|+.++
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~  408 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP  408 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence            75 345666777777777777776655 345667777777777765322221      12466777776653 344443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=9e-20  Score=174.41  Aligned_cols=214  Identities=29%  Similarity=0.382  Sum_probs=185.8

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~   80 (475)
                      .+|++.++|..++.+.+++.++.+++ ++.++|.  .+.++.+|+.|+.+++ .++.+|+ ++.+-.|+.|+..+|++.+
T Consensus        76 ~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~--~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~s  151 (565)
T KOG0472|consen   76 HDNKLSQLPAAIGELEALKSLNVSHN-KLSELPE--QIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISS  151 (565)
T ss_pred             ccchhhhCCHHHHHHHHHHHhhcccc-hHhhccH--HHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcccccccc
Confidence            57889999999999999999999985 5677774  5778889999999994 5666665 9999999999999999999


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  160 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~  160 (475)
                      +|..+.++.+|..|++.++ .++.+|+..-+++.|++||...|-++.+|+.++.+.+|..|++..|+ +..+| .+.++.
T Consensus       152 lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs  228 (565)
T KOG0472|consen  152 LPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCS  228 (565)
T ss_pred             CchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccH
Confidence            9999999999999999995 46666666666999999999999999999999999999999999987 56677 778899


Q ss_pred             CCCEEEecCCCCCCcchhhC-CCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891          161 SLTYLYLTDCAITELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      .|++|+++.|.+.-+|+... ++++|..||+..|+++++|..+..+.+|.+||+++| .+..+|
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp  291 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLP  291 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCC
Confidence            99999999999999888765 899999999999999999999999999999999987 444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-19  Score=151.19  Aligned_cols=175  Identities=30%  Similarity=0.395  Sum_probs=119.4

Q ss_pred             CcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCc
Q 011891           59 LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL  138 (475)
Q Consensus        59 ~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L  138 (475)
                      +|.+..+.+++.|.|++|+++.+|..|..+.+|+.|++.+ +.++++|..++.+++|+.|+++-|.+..+|..++.++.|
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            3334445555556666666666666666666666666655 345566666666666666666666666666666666666


Q ss_pred             CEEEcCCCCCC-CccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          139 CVLDLGDCKSL-KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       139 ~~L~L~~c~~l-~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +.||+.+|... ..+|..+-.+..|+.|+|++|.+.-+|..++.+++|+.|.+..|.+-++|..++.+..|+.|.|.++ 
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-  183 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-  183 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-
Confidence            66666665532 2466666677778888888888888888889999999999999988889988999999999998887 


Q ss_pred             cccccCCCccCcceecccccc
Q 011891          218 RLQSLPKLPCNLYWLDAQHCT  238 (475)
Q Consensus       218 ~l~~lp~l~~~L~~L~i~~c~  238 (475)
                      .++.   +|+.|..|++-+-.
T Consensus       184 rl~v---lppel~~l~l~~~k  201 (264)
T KOG0617|consen  184 RLTV---LPPELANLDLVGNK  201 (264)
T ss_pred             eeee---cChhhhhhhhhhhH
Confidence            3333   45566666655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.68  E-value=9.4e-18  Score=167.27  Aligned_cols=233  Identities=24%  Similarity=0.260  Sum_probs=165.6

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |+.|.|.+++. .+-.-.+|++|+|++|+ ++.+-. ..+.++.+|..|.|+. +.+..+|.  |.++++|+.|+|..|.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeecccc-cccccc-ccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence            34556666653 33344567777777643 333321 2355667788888887 56777776  5568888888887777


Q ss_pred             Cccc-CcccC------------------------CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-Ccc
Q 011891           78 IEEL-PSSIG------------------------CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSP  131 (475)
Q Consensus        78 i~~l-p~~i~------------------------~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~  131 (475)
                      |+.+ ...+.                        .+.++++|+|..|.....--.++.+++.|+.|+++.|.|..+ +++
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence            6543 22233                        355666666666433322234678899999999999999966 455


Q ss_pred             cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCcc----ccchHHhhcC
Q 011891          132 IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFE----RIPESIIRLS  206 (475)
Q Consensus       132 i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~----~lp~~i~~l~  206 (475)
                      -...++|++|+|++|...+--+..+..+..|+.|.|+.|.+..+. ..+..+++|++|||++|.+.    .-...+..++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            677899999999999855544556678899999999999999864 45778999999999999875    2234567799


Q ss_pred             CcccccccccccccccCC----CccCcceeccccc
Q 011891          207 KLSSLLVSYCERLQSLPK----LPCNLYWLDAQHC  237 (475)
Q Consensus       207 ~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c  237 (475)
                      +|++|++.+| .++++|.    -.+.|++|++.+.
T Consensus       393 ~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  393 SLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence            9999999987 6888875    3477888888664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.7e-18  Score=146.80  Aligned_cols=168  Identities=31%  Similarity=0.457  Sum_probs=151.2

Q ss_pred             ChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCC
Q 011891           35 NPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK  113 (475)
Q Consensus        35 ~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~  113 (475)
                      ++.++.++.+.+.|.|++ +.+..+|. |+.+.+|+.|++.+|.|+++|.++..+++|+.|+++- +.+..+|.+++.++
T Consensus        25 ~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP  102 (264)
T ss_pred             hcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence            334566778888899999 56677766 9999999999999999999999999999999999987 56788999999999


Q ss_pred             CCcEEEeeCcCCc--cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEec
Q 011891          114 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE  191 (475)
Q Consensus       114 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~  191 (475)
                      .|+.||+++|++.  .+|..+..++.|+.|.+++|. .+.+|...+++.+|+.|.+.+|.+.++|..++.++.|++|.+.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            9999999999887  689999999999999999887 6778989999999999999999999999999999999999999


Q ss_pred             cCCccccchHHhhc
Q 011891          192 RNNFERIPESIIRL  205 (475)
Q Consensus       192 ~n~l~~lp~~i~~l  205 (475)
                      +|+++.+|..++++
T Consensus       182 gnrl~vlppel~~l  195 (264)
T KOG0617|consen  182 GNRLTVLPPELANL  195 (264)
T ss_pred             cceeeecChhhhhh
Confidence            99999999877663

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=6.6e-16  Score=166.32  Aligned_cols=219  Identities=24%  Similarity=0.368  Sum_probs=172.3

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      |.++++..+|..+.  ++|+.|+|++| .++.+|.  .+  ..+|+.|++++| .++.+|. +.  .+|+.|+|++|.+.
T Consensus       185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~--~l--~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        185 LKILGLTTIPACIP--EQITTLILDNN-ELKSLPE--NL--QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             eCCCCcCcCCcccc--cCCcEEEecCC-CCCcCCh--hh--ccCCCEEECCCC-ccccCChhhh--ccccEEECcCCccC
Confidence            35667788887653  57999999986 6778875  22  258999999985 5778886 33  57999999999999


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL  159 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l  159 (475)
                      .+|..+.  .+|+.|++++| .+..+|..+.  ++|+.|++++|.++.+|..+.  .+|+.|++++|. +..+|..+  .
T Consensus       255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~  324 (754)
T PRK15370        255 ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPETL--P  324 (754)
T ss_pred             cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCccc--c
Confidence            9998764  58999999975 5678887664  589999999999999887653  578999999876 44566433  3


Q ss_pred             CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC-CccCcceecccccc
Q 011891          160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCT  238 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~  238 (475)
                      ++|+.|++++|.++.+|..+  +++|+.|++++|+++.+|..+  .++|+.|+|++| .+..+|. ++.+|+.|+++++ 
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N-  398 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRN-ALTNLPENLPAALQIMQASRN-  398 (754)
T ss_pred             ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCC-cCCCCCHhHHHHHHHHhhccC-
Confidence            68999999999999988765  379999999999999888765  378999999998 4667774 5678899999885 


Q ss_pred             cCccccC
Q 011891          239 TLESLSG  245 (475)
Q Consensus       239 ~L~~l~~  245 (475)
                      +|+.++.
T Consensus       399 ~L~~LP~  405 (754)
T PRK15370        399 NLVRLPE  405 (754)
T ss_pred             CcccCch
Confidence            5666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=5.4e-16  Score=166.99  Aligned_cols=204  Identities=26%  Similarity=0.404  Sum_probs=122.0

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   96 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L   96 (475)
                      +...|++++. .++.+|.  .+.  +.|+.|+|++| .++.+|. +.  ++|++|++++|.++.+|..+.  .+|+.|+|
T Consensus       179 ~~~~L~L~~~-~LtsLP~--~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPA--CIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCC-CcCcCCc--ccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            4566666663 4556654  121  35667777664 5556665 22  467777777777776665442  35777777


Q ss_pred             eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc
Q 011891           97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  176 (475)
Q Consensus        97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp  176 (475)
                      ++|. +..+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|. +..+|..+  .++|+.|++++|.++.+|
T Consensus       249 s~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        249 SINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNSLTALP  320 (754)
T ss_pred             cCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCccccCC
Confidence            7654 446665543  367777777777776666543  467777777664 44454332  135666777777776666


Q ss_pred             hhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC-CccCcceecccccccCccccC
Q 011891          177 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       177 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      ..+  .++|+.|++++|.++.+|..+  .++|+.|++++|+ +..+|. +|++|+.|++++| .|+.++.
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP~  384 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLPE  384 (754)
T ss_pred             ccc--cccceeccccCCccccCChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCCH
Confidence            433  356777777777776666544  2567777777663 455553 5566777777665 3554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=2.7e-15  Score=160.90  Aligned_cols=215  Identities=27%  Similarity=0.348  Sum_probs=116.3

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++++++.+|..+.  ++|+.|++.+| .++.+|.     ..++|++|+|++| .++.+|..  .++|+.|++++|.+..
T Consensus       208 Ls~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        208 VGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNPLTH  276 (788)
T ss_pred             cCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccCc--ccccceeeccCCchhh
Confidence            35667778887664  47888888874 5677764     2467888888884 66677653  3567777777777666


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCC-----------------CCCcCEEEc
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC-----------------LSALCVLDL  143 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~-----------------l~~L~~L~L  143 (475)
                      +|..   ..+|+.|++++| .++.+|..   +++|+.|++++|.++.+|.....                 ..+|+.|++
T Consensus       277 Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL  349 (788)
T PRK15387        277 LPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSV  349 (788)
T ss_pred             hhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEec
Confidence            6642   245666666664 34455542   34566666666666655542111                 123444444


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      ++|. +..+|..   ..+|+.|++++|.++.+|..   +.+|+.|++++|+++.+|..   .++|+.|++++|. ++.+|
T Consensus       350 S~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP  418 (788)
T PRK15387        350 SDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLP  418 (788)
T ss_pred             CCCc-cCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCC
Confidence            4433 2223321   12344444444444444431   23455555555555555532   2455555555552 44555


Q ss_pred             CCccCcceecccccccCccccC
Q 011891          224 KLPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       224 ~l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      .+|.+|+.|+++++ .++.+|.
T Consensus       419 ~l~~~L~~L~Ls~N-qLt~LP~  439 (788)
T PRK15387        419 MLPSGLLSLSVYRN-QLTRLPE  439 (788)
T ss_pred             cchhhhhhhhhccC-cccccCh
Confidence            55555555555542 3444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=2.1e-15  Score=161.75  Aligned_cols=207  Identities=23%  Similarity=0.276  Sum_probs=139.1

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcC-----------------
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS-----------------   63 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~-----------------   63 (475)
                      +.+|+|+.||..   .++|++|+|++| .++.+|..     .++|+.|++++| .+..+|.+.                 
T Consensus       229 L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N~Lt~LP  298 (788)
T PRK15387        229 IPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLP  298 (788)
T ss_pred             ccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-chhhhhhchhhcCEEECcCCcccccc
Confidence            457888888863   588999999986 67777741     245666666664 344444311                 


Q ss_pred             -CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEE
Q 011891           64 -SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD  142 (475)
Q Consensus        64 -~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  142 (475)
                       .+++|+.|++++|.++.+|..   ..+|+.|++++| .+..+|..   ..+|+.|++++|.++.+|..   ..+|+.|+
T Consensus       299 ~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~  368 (788)
T PRK15387        299 VLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLW  368 (788)
T ss_pred             ccccccceeECCCCccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCccCCCCCC---Ccccceeh
Confidence             123455555555555444432   123444455443 23344431   24789999999999998864   35788889


Q ss_pred             cCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccccccc
Q 011891          143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL  222 (475)
Q Consensus       143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~l  222 (475)
                      +++|. +..+|..   ..+|+.|++++|.++.+|..   .++|+.|++++|+++.+|..   ..+|+.|++++| .++.+
T Consensus       369 Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N-qLt~L  437 (788)
T PRK15387        369 AYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRN-QLTRL  437 (788)
T ss_pred             hhccc-cccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC-ccccc
Confidence            98876 5556643   35799999999999998863   46899999999999999864   357889999987 46677


Q ss_pred             CCC---ccCcceecccccc
Q 011891          223 PKL---PCNLYWLDAQHCT  238 (475)
Q Consensus       223 p~l---~~~L~~L~i~~c~  238 (475)
                      |.-   .++|+.|++++++
T Consensus       438 P~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ChHHhhccCCCeEECCCCC
Confidence            752   3566677776653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=2.9e-16  Score=164.34  Aligned_cols=214  Identities=27%  Similarity=0.359  Sum_probs=140.2

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   96 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L   96 (475)
                      +|+++++++ ..++.+|  ++++.+.+|+.|+..+ +.+..+|. +..+.+|+.|....|.++.+|.....+++|++|+|
T Consensus       242 nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  242 NLQYLDISH-NNLSNLP--EWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cceeeecch-hhhhcch--HHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            455566665 2445555  4556666666666666 34455555 55666666666666666666666666666666666


Q ss_pred             eCCCCCCccccccC--------------------------CCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCC
Q 011891           97 GDCKNLKTLPSSLC--------------------------KLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSL  149 (475)
Q Consensus        97 ~~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l  149 (475)
                      ..| ++..+|+.+.                          .+..|+.|.+.+|.++ ..-+.+.+..+|+.|+|++|. +
T Consensus       318 ~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L  395 (1081)
T KOG0618|consen  318 QSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-L  395 (1081)
T ss_pred             hhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-c
Confidence            653 3444443211                          1223455555566555 333445667788888888876 5


Q ss_pred             CccccC-CCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccc--cC-CC
Q 011891          150 KSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS--LP-KL  225 (475)
Q Consensus       150 ~~l~~~-~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~--lp-~l  225 (475)
                      ..+|.. +.++..|+.|+|++|.++.+|..+..+..|++|...+|++..+| .+.+++.|+.+|++.|. |+.  +| ..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~  473 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEAL  473 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhC
Confidence            555544 36777888888888888888888888888888888888888888 77888888889988653 332  23 35


Q ss_pred             c-cCcceeccccccc
Q 011891          226 P-CNLYWLDAQHCTT  239 (475)
Q Consensus       226 ~-~~L~~L~i~~c~~  239 (475)
                      | +.|++||++|.+.
T Consensus       474 p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCcccceeeccCCcc
Confidence            6 8899999888653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.43  E-value=9.1e-15  Score=153.28  Aligned_cols=230  Identities=27%  Similarity=0.384  Sum_probs=148.7

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~   80 (475)
                      ++.+++-+|..+..-..+..|+++.+. +...| ...+...-+|+.|++++ +.+..+|. +..+.+|+.|+++.|.|..
T Consensus         6 s~~~l~~ip~~i~~~~~~~~ln~~~N~-~l~~p-l~~~~~~v~L~~l~lsn-n~~~~fp~~it~l~~L~~ln~s~n~i~~   82 (1081)
T KOG0618|consen    6 SDEQLELIPEQILNNEALQILNLRRNS-LLSRP-LEFVEKRVKLKSLDLSN-NQISSFPIQITLLSHLRQLNLSRNYIRS   82 (1081)
T ss_pred             ccccCcccchhhccHHHHHhhhccccc-cccCc-hHHhhheeeeEEeeccc-cccccCCchhhhHHHHhhcccchhhHhh
Confidence            456677777777666668888888753 44445 45566666688888887 56777776 7788888888888888888


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE--------------------
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV--------------------  140 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~--------------------  140 (475)
                      +|.++.++.+|++|+|.+ +.+..+|.++..+++|++|++++|.+..+|..+..++.+..                    
T Consensus        83 vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~  161 (1081)
T KOG0618|consen   83 VPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKL  161 (1081)
T ss_pred             Cchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhh
Confidence            888888888888888876 56778888888888888888888877666654433322222                    


Q ss_pred             ---------------------EEcCCCCCC----------CccccC-----------------------------CCCCC
Q 011891          141 ---------------------LDLGDCKSL----------KSLKLP-----------------------------FDGLY  160 (475)
Q Consensus       141 ---------------------L~L~~c~~l----------~~l~~~-----------------------------~~~l~  160 (475)
                                           |+|++|...          +.+-..                             ..--.
T Consensus       162 ~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~  241 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPL  241 (1081)
T ss_pred             hhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccc
Confidence                                 333333221          000000                             00112


Q ss_pred             CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCc---cCcceecccc
Q 011891          161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQH  236 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~---~~L~~L~i~~  236 (475)
                      +|+.++++.++++.+|++++.+.+|+.+++.+|.++.+|..+...++|+.|.+.+| .+..+|..+   .+|+.|+++.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh
Confidence            45666666666666677777777777777777777766666666666666666665 345555433   3555666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=9.2e-14  Score=137.19  Aligned_cols=224  Identities=22%  Similarity=0.188  Sum_probs=151.4

Q ss_pred             cccCCCCCcEEeccCCCCccCC--CChhhccCCCCCcEEEEeCCCCCCC-------CcC-cCCCCCCcEEEccccCCc-c
Q 011891           12 SVQHHGKLNQIIMAACNIFTKT--PNPSLIQHLNKLVILNLSGCSKLKS-------LPE-ISSAGNIEKILLDGTAIE-E   80 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~--p~~~~~~~l~~L~~L~L~~c~~l~~-------~p~-i~~l~~L~~L~L~~~~i~-~   80 (475)
                      -+..+.+|+.|++++|..-...  .....+...+.|+.|+++++.. ..       ++. +..+++|+.|++++|.+. .
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            3456777999999997532110  0122456778899999998643 32       122 457889999999999886 3


Q ss_pred             cCcccCCC---CCCcEEeeeCCCCCC----ccccccCCC-CCCcEEEeeCcCCc-----cCCcccCCCCCcCEEEcCCCC
Q 011891           81 LPSSIGCL---SRLLELNLGDCKNLK----TLPSSLCKL-KSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCK  147 (475)
Q Consensus        81 lp~~i~~l---~~L~~L~L~~c~~l~----~lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~c~  147 (475)
                      .+..+..+   ++|++|++++|....    .+...+..+ ++|+.|++++|.++     .++..+..+.+|++|++++|.
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            33344444   449999999986442    233455666 89999999999887     344456677889999999987


Q ss_pred             CCC----ccccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCccc--cchHHhh----cCCccccc
Q 011891          148 SLK----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFER--IPESIIR----LSKLSSLL  212 (475)
Q Consensus       148 ~l~----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~----l~~L~~L~  212 (475)
                      ...    .++..+..+++|+.|++++|.+++     ++..+..+++|+.|++++|.++.  +......    .+.|++|+
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  256 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS  256 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence            432    122223455789999999998875     45567788999999999998863  2211222    37999999


Q ss_pred             ccccccc--------cccCCCccCcceeccccc
Q 011891          213 VSYCERL--------QSLPKLPCNLYWLDAQHC  237 (475)
Q Consensus       213 l~~c~~l--------~~lp~l~~~L~~L~i~~c  237 (475)
                      +++|...        +.++.. ++|+.++++++
T Consensus       257 l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N  288 (319)
T cd00116         257 LSCNDITDDGAKDLAEVLAEK-ESLLELDLRGN  288 (319)
T ss_pred             ccCCCCCcHHHHHHHHHHhcC-CCccEEECCCC
Confidence            9998532        122223 56777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=1.2e-13  Score=136.26  Aligned_cols=217  Identities=22%  Similarity=0.211  Sum_probs=147.7

Q ss_pred             EEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC----CCcC-cCCCCCCcEEEccccCCcc-------cCcccCCC
Q 011891           21 QIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDGTAIEE-------LPSSIGCL   88 (475)
Q Consensus        21 ~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~----~~p~-i~~l~~L~~L~L~~~~i~~-------lp~~i~~l   88 (475)
                      .|+|.++ .+...-....+..+..|+.|++++|..-.    .++. +...++|++|+++++.+..       ++..+..+
T Consensus         2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3555443 33322223345566779999999975322    2443 5577889999998886652       33456678


Q ss_pred             CCCcEEeeeCCCCCCccccccCCCCC---CcEEEeeCcCCcc-----CCcccCCC-CCcCEEEcCCCCCCC----ccccC
Q 011891           89 SRLLELNLGDCKNLKTLPSSLCKLKS---LEEICLTGSAIEE-----LPSPIECL-SALCVLDLGDCKSLK----SLKLP  155 (475)
Q Consensus        89 ~~L~~L~L~~c~~l~~lp~~l~~l~~---L~~L~l~~~~i~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~l~~~  155 (475)
                      ++|+.|++++|......+..+..+.+   |++|++++|.+..     +...+..+ ++|+.|++++|....    .+...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            89999999998766555554444444   9999999988762     33345566 889999999988542    22333


Q ss_pred             CCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----ccchHHhhcCCccccccccccccc----c
Q 011891          156 FDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQ----S  221 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c~~l~----~  221 (475)
                      +..+++|+.|++++|.+++     ++..+...++|+.|++++|.++     .++..+..+++|++|++++|+.-.    .
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            4567789999999998884     4455666789999999999875     344556678899999999985221    1


Q ss_pred             c----CCCccCcceecccccc
Q 011891          222 L----PKLPCNLYWLDAQHCT  238 (475)
Q Consensus       222 l----p~l~~~L~~L~i~~c~  238 (475)
                      +    +.....|+.|++.+|.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         241 LASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHhccCCCceEEEccCCC
Confidence            1    1113688999998873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.29  E-value=1.3e-12  Score=143.18  Aligned_cols=238  Identities=28%  Similarity=0.377  Sum_probs=172.8

Q ss_pred             CCcccccccccCCCCCcEEeccCCCC-ccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCccc
Q 011891            4 SNIEQLSESVQHHGKLNQIIMAACNI-FTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         4 s~l~~L~~~~~~l~~L~~L~Ls~~~~-l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~l   81 (475)
                      ++++.+.... ..++|+.|-+.++.. +..++. ..+..++.|++|||++|..+..+|+ |+.+-+|++|+++++.++++
T Consensus       533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L  610 (889)
T KOG4658|consen  533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL  610 (889)
T ss_pred             cchhhccCCC-CCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence            4455554433 455899998888764 555543 3477899999999999999999999 99999999999999999999


Q ss_pred             CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891           82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDG  158 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~  158 (475)
                      |..+++|..|.+|++..+..+..+|..+..+.+|++|.+......   ..-..+..+.+|+.+.......  .+-..+..
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~  688 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLG  688 (889)
T ss_pred             chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhh
Confidence            999999999999999998888888877777999999999876532   1222345666677666654432  11111222


Q ss_pred             CCCCC----EEEecCCCCCCcchhhCCCCCCceeEeccCCccccch-----H-Hh-hcCCcccccccccccccccCC--C
Q 011891          159 LYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-----S-II-RLSKLSSLLVSYCERLQSLPK--L  225 (475)
Q Consensus       159 l~~L~----~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-----~-i~-~l~~L~~L~l~~c~~l~~lp~--l  225 (475)
                      +..|.    .+.+.+|.....+..+..+.+|+.|.+.+|.+.....     . .. .++++..+.+.+|..++.+..  .
T Consensus       689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f  768 (889)
T KOG4658|consen  689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF  768 (889)
T ss_pred             hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence            33332    3343445555566778889999999999998753221     1 11 256778888888887777663  6


Q ss_pred             ccCcceecccccccCccccC
Q 011891          226 PCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       226 ~~~L~~L~i~~c~~L~~l~~  245 (475)
                      +++|+.|.+..|..++.+..
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             cCcccEEEEecccccccCCC
Confidence            89999999999988887654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.25  E-value=6.5e-13  Score=127.60  Aligned_cols=71  Identities=28%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             CCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCCc
Q 011891          156 FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKLP  226 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l~  226 (475)
                      +.++++|+.|+|++|.++++ +.++..+..+++|.|.+|++..+. ..+..+..|+.|++++|+.-.-.|...
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            46788999999999999985 567888899999999999988765 457788999999999886544444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=2.7e-13  Score=135.59  Aligned_cols=166  Identities=27%  Similarity=0.411  Sum_probs=95.6

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcC
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA  124 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~  124 (475)
                      ...||+. +....+|. +..+..|+.+.|+.|.+..+|..+.++..|.+|+|+.| .+..+|..++.++ |+.|.+++|+
T Consensus        78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSR-NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhhccc-cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence            3444554 33444554 44445555566666666666666666666666666653 3455555555543 5666666666


Q ss_pred             CccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhh
Q 011891          125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR  204 (475)
Q Consensus       125 i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~  204 (475)
                      ++.+|..++.+..|..|+.+.|. +..+|..++++.+|+.|.+..|++..+|+.+. .-.|..||++.|++..||..+.+
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~  232 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK  232 (722)
T ss_pred             cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence            66666666655666666666554 34455555556666666666666666665555 33455666666666666666666


Q ss_pred             cCCccccccccc
Q 011891          205 LSKLSSLLVSYC  216 (475)
Q Consensus       205 l~~L~~L~l~~c  216 (475)
                      +..|+.|-|.+|
T Consensus       233 m~~Lq~l~LenN  244 (722)
T KOG0532|consen  233 MRHLQVLQLENN  244 (722)
T ss_pred             hhhheeeeeccC
Confidence            666666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=4.3e-13  Score=128.81  Aligned_cols=215  Identities=19%  Similarity=0.219  Sum_probs=140.9

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCC----------
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGN----------   67 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~----------   67 (475)
                      |..|+|+.+|+ .++++++||.||||+| ++..+.. ..+..+..|..|-+.|+++++++|.  ++.+..          
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             eccCCcccCChhhccchhhhceeccccc-chhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            34688999985 6899999999999996 4555532 4677788888888888888988885  555544          


Q ss_pred             --------------CcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCC------------ccccccCCCCCCcEEEe
Q 011891           68 --------------IEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLK------------TLPSSLCKLKSLEEICL  120 (475)
Q Consensus        68 --------------L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~------------~lp~~l~~l~~L~~L~l  120 (475)
                                    |..|.+.+|.++.++. .+..+..++++.+..+....            ..|..++......-..+
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence                          4444555555554444 44555555555554433110            01111111111100000


Q ss_pred             eC-------------------------c-CCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891          121 TG-------------------------S-AIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus       121 ~~-------------------------~-~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~  173 (475)
                      .+                         + .....|. .+..+++|++|++++|.....-+..+.+...++.|.|..|++.
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~  311 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE  311 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence            00                         0 1111121 2567899999999999876666677889999999999999988


Q ss_pred             Ccc-hhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccc
Q 011891          174 ELP-ESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       174 ~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~  217 (475)
                      .+. ..+..+..|+.|+|++|+|+.+ |..+..+.+|..|++-.|+
T Consensus       312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            753 4577899999999999999854 5677788888888886553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.2e-11  Score=126.00  Aligned_cols=179  Identities=33%  Similarity=0.458  Sum_probs=124.3

Q ss_pred             ccCCCCCcEEEEeCCCCCCCCcC-cCCCC-CCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCc
Q 011891           39 IQHLNKLVILNLSGCSKLKSLPE-ISSAG-NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE  116 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~l~~~p~-i~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~  116 (475)
                      +..++.++.|++.+ ..+.++|. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.++.|+
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            44456677777776 45666666 44443 777788877777777777777777888877774 4566666555677777


Q ss_pred             EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      .|++++|.+..+|..+..+.+|++|.+++|.. ...+..+.++.++..|.+.++++..++..++.+++|+.|++++|.++
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             heeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            77777777777777766666777777777752 22344456666777777777777776677777777777777777777


Q ss_pred             ccchHHhhcCCcccccccccccccc
Q 011891          197 RIPESIIRLSKLSSLLVSYCERLQS  221 (475)
Q Consensus       197 ~lp~~i~~l~~L~~L~l~~c~~l~~  221 (475)
                      .++. +..+.+|+.|+++++.....
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccc-ccccCccCEEeccCcccccc
Confidence            7765 66777777777777654433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.8e-12  Score=129.83  Aligned_cols=207  Identities=21%  Similarity=0.294  Sum_probs=167.6

Q ss_pred             CCCccccccccc--CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891            3 HSNIEQLSESVQ--HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         3 ~s~l~~L~~~~~--~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      +.+++..|-+-.  .+.--...||+.| .+.++|.  .+..+-.|+.+.|+. +.+..+|. +.++..|.+|+|+.|.+.
T Consensus        59 ~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~--~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS  134 (722)
T KOG0532|consen   59 GRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPE--EACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLS  134 (722)
T ss_pred             cchhhcCCCccccccccchhhhhcccc-ccccCch--HHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccchhh
Confidence            444555553222  2333455778875 4566664  345566778888887 56778887 889999999999999999


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL  159 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l  159 (475)
                      .+|..+..|+ |+.|.+++ ++++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|. +..+|..+..+
T Consensus       135 ~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L  211 (722)
T KOG0532|consen  135 HLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL  211 (722)
T ss_pred             cCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC
Confidence            9999988776 99999988 578999999999999999999999999999999999999999999987 55577666644


Q ss_pred             CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHh---hcCCcccccccccc
Q 011891          160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII---RLSKLSSLLVSYCE  217 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~---~l~~L~~L~l~~c~  217 (475)
                      + |..||++.|++..+|-.+..++.|++|-|.+|.+.+=|+.|.   ...--++|++.-|.
T Consensus       212 p-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  212 P-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             c-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            4 999999999999999999999999999999999998887664   33455677887774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=4.8e-11  Score=121.65  Aligned_cols=193  Identities=30%  Similarity=0.384  Sum_probs=158.3

Q ss_pred             cccccCCCCCcEEeccCCCCccCCCChhhccCCC-CCcEEEEeCCCCCCCCc-CcCCCCCCcEEEccccCCcccCcccCC
Q 011891           10 SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGC   87 (475)
Q Consensus        10 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~-~L~~L~L~~c~~l~~~p-~i~~l~~L~~L~L~~~~i~~lp~~i~~   87 (475)
                      ...+..++.++.|++.+ ..+++++..  ...+. +|+.|++++ +.+..+| .+..+++|+.|++++|.+..+|...+.
T Consensus       109 ~~~~~~~~~l~~L~l~~-n~i~~i~~~--~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         109 ISELLELTNLTSLDLDN-NNITDIPPL--IGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             chhhhcccceeEEecCC-cccccCccc--cccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence            34455667899999988 466777652  34443 899999999 6788886 589999999999999999999998889


Q ss_pred             CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891           88 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL  167 (475)
Q Consensus        88 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L  167 (475)
                      +++|+.|+++++ .+..+|..+.....|++|.+++|.+...+..+..+.++..+.+.++. +..++...+.+++|+.|++
T Consensus       185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecc
Confidence            999999999994 67888887767777999999999888888888999999999977766 4444566788899999999


Q ss_pred             cCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcc
Q 011891          168 TDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLS  209 (475)
Q Consensus       168 ~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~  209 (475)
                      ++|.+++++. ++.+.+|+.|+++++.+..++........+.
T Consensus       263 s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~  303 (394)
T COG4886         263 SNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLL  303 (394)
T ss_pred             cccccccccc-ccccCccCEEeccCccccccchhhhccchhH
Confidence            9999999887 8999999999999999876665544444333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=1.6e-10  Score=126.83  Aligned_cols=152  Identities=27%  Similarity=0.336  Sum_probs=114.1

Q ss_pred             cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccC--CcccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCc
Q 011891           40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA--IEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE  116 (475)
Q Consensus        40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~--i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~  116 (475)
                      .+....+.+.+-+ +.+..++.-...++|++|-+.++.  +..++.. +..++.|++|||++|..+..+|+.|+.+-+|+
T Consensus       520 ~~~~~~rr~s~~~-~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMN-NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEec-cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3445667777766 445555554455688888888875  5665553 66789999999999999999999999999999


Q ss_pred             EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC---cchhhCCCCCCceeEecc
Q 011891          117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLER  192 (475)
Q Consensus       117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~  192 (475)
                      +|+++++.+..+|.++.++..|.+|++..+..+..++.....+.+|++|.+.......   .-..+..+.+|+.|.+..
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999999999999999999999999888887777666778899999887765222   233445566666555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.2e-11  Score=116.75  Aligned_cols=201  Identities=21%  Similarity=0.212  Sum_probs=120.3

Q ss_pred             CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCcccCcc--cCCCC
Q 011891           15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIEELPSS--IGCLS   89 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~~lp~~--i~~l~   89 (475)
                      ++.+|+.+.|.++.. ...+.-.....|++++.|||+++-...-.|-   ...+++|+.|+|+.|.+....++  -..++
T Consensus       119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            577777777777532 2222113456778888888887432222222   23678888888888776643332  22567


Q ss_pred             CCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcC-CccCCcccCCCCCcCEEEcCCCCCCCccc-cCCCCCCCCCEEE
Q 011891           90 RLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLY  166 (475)
Q Consensus        90 ~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~l~-~~~~~l~~L~~L~  166 (475)
                      .|+.|.|+.|.... .+...+..+++|+.|++.+|. +..-..+..-+..|+.|+|++|..+..-. ...+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            78888888876442 233334557777888887773 32222233445677777887777544211 2336677777777


Q ss_pred             ecCCCCCC--cchh-----hCCCCCCceeEeccCCccccc--hHHhhcCCccccccccc
Q 011891          167 LTDCAITE--LPES-----LGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       167 L~~~~l~~--lp~~-----l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c  216 (475)
                      ++.|.+.+  +|+.     ...+++|++|++..|++..++  ..+..+.+|+.|.+..+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            77777776  3433     456677788888887776554  23455566666665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7.8e-11  Score=114.90  Aligned_cols=184  Identities=16%  Similarity=0.184  Sum_probs=137.1

Q ss_pred             cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCc--ccCcccC
Q 011891           12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIE--ELPSSIG   86 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~--~lp~~i~   86 (475)
                      -.+.|++++.|||+++-.-.-.+-...+.+|++|+.|+|+.| .+..+-+   -..+++|+.|.|+.|+++  ++-....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            567899999999998532222233445778999999999995 3443322   237899999999999988  4545566


Q ss_pred             CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC--cccCCCCCcCEEEcCCCCCCCc-cccC-----CCC
Q 011891           87 CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP--SPIECLSALCVLDLGDCKSLKS-LKLP-----FDG  158 (475)
Q Consensus        87 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~-l~~~-----~~~  158 (475)
                      .+++|+.|+|.+|..+.........+..|+.|+|++|.+-..+  ..++.++.|+.|+++.|...+- +|..     ...
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            7899999999998644433333345778999999999998877  5678899999999998874331 1111     256


Q ss_pred             CCCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCcc
Q 011891          159 LYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +++|+.|++..|++.+++  ..+..+.+|+.|.+..|.+.
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            789999999999998864  34667788888888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=2.2e-10  Score=106.80  Aligned_cols=172  Identities=24%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             cCCCCCcEEEEeCCCCCCCCcCc-CCCCCCcEEEccccCCcccCcc------------------------cCCCCCCcEE
Q 011891           40 QHLNKLVILNLSGCSKLKSLPEI-SSAGNIEKILLDGTAIEELPSS------------------------IGCLSRLLEL   94 (475)
Q Consensus        40 ~~l~~L~~L~L~~c~~l~~~p~i-~~l~~L~~L~L~~~~i~~lp~~------------------------i~~l~~L~~L   94 (475)
                      .-+++|+.+.++.|. .+.+-++ ..-|.|+++...++.+...|.-                        +.....|++|
T Consensus       211 ~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel  289 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL  289 (490)
T ss_pred             HHhhhhheeeeeccc-hhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence            345667777777763 2333332 2345666776666554422211                        1112334455


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      +|++| .++.+.+++.-++.++.|+++.|.+..+.. +..+.+|+.||+++|. +..+.....++-+.+.|.|++|.+.+
T Consensus       290 DLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  290 DLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             ccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhh
Confidence            55542 234444444444555555555555554433 4445555555555543 22222222334445555555555444


Q ss_pred             cchhhCCCCCCceeEeccCCccccc--hHHhhcCCccccccccc
Q 011891          175 LPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       175 lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c  216 (475)
                      + ..++.+-+|..||+++|+|..+.  ..|+++|.|+.|.+.+|
T Consensus       367 L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  367 L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            4 23445555555555555554332  24555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.3e-09  Score=96.98  Aligned_cols=56  Identities=34%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccc----hHHhhcCCccccccc
Q 011891          159 LYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP----ESIIRLSKLSSLLVS  214 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp----~~i~~l~~L~~L~l~  214 (475)
                      +++|+.|++++|+|.++  -..+..+++|+.|++.+|.++..+    ..+..+|+|+.||-.
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            34455555555544442  123455666666666666664332    134455555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.1e-09  Score=97.51  Aligned_cols=115  Identities=23%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             CcccccccccCCCCCcEEeccCCCCccCCCChhhcc-CCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc
Q 011891            5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS   83 (475)
Q Consensus         5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~-~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~   83 (475)
                      .|++.+.. .+..+++.|+|.++. ++.+   ..++ .+.+|+.|+|++ +.++.++.+..+++|++|++++|.|+.+..
T Consensus         8 ~i~~~~~~-~n~~~~~~L~L~~n~-I~~I---e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    8 MIEQIAQY-NNPVKLRELNLRGNQ-ISTI---ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS---S-CH
T ss_pred             cccccccc-ccccccccccccccc-cccc---cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCCcccc
Confidence            34444332 233355666666642 2222   2233 355666666666 345555555556666666666666665544


Q ss_pred             cc-CCCCCCcEEeeeCCCCCCccc--cccCCCCCCcEEEeeCcCCc
Q 011891           84 SI-GCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIE  126 (475)
Q Consensus        84 ~i-~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~  126 (475)
                      .+ ..+++|++|++++|. +..+.  ..+..+++|+.|++.+|.+.
T Consensus        82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence            33 235556666655533 22221  12334455555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.84  E-value=1e-08  Score=102.00  Aligned_cols=163  Identities=23%  Similarity=0.265  Sum_probs=109.3

Q ss_pred             cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc-CCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCC
Q 011891           85 IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT  163 (475)
Q Consensus        85 i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~  163 (475)
                      +..+.++++|++++| .++.+|. +  ..+|++|.++++ .++.+|..+  ..+|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445788999999998 7888883 2  346999999874 566777655  36899999999977776663      478


Q ss_pred             EEEecCCCCCCcchhhCCCCCCceeEeccCCc---cccchHHhhcCCcccccccccccccccCCCccCcceeccccc--c
Q 011891          164 YLYLTDCAITELPESLGLLSSLEELYLERNNF---ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC--T  238 (475)
Q Consensus       164 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l---~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c--~  238 (475)
                      .|++..+....++.   -+++|+.|.+.+++.   ..+|..  -.++|+.|++++|..+...+.+|.+|+.|.++.+  .
T Consensus       116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~  190 (426)
T PRK15386        116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKT  190 (426)
T ss_pred             eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccccc
Confidence            88887665444321   234677888765431   122211  1268999999999866533458999999998663  4


Q ss_pred             cCccccCCCCCcceeEEEecCCccchHH
Q 011891          239 TLESLSGLFSSYKCVFFYLNENFKLDRK  266 (475)
Q Consensus       239 ~L~~l~~~~~~~~~~~l~~~~c~~l~~~  266 (475)
                      +++......+.. . .+.|.+|+++...
T Consensus       191 sLeI~~~sLP~n-l-~L~f~n~lkL~~~  216 (426)
T PRK15386        191 TWNISFEGFPDG-L-DIDLQNSVLLSPD  216 (426)
T ss_pred             cccCcccccccc-c-EechhhhcccCHH
Confidence            444333322322 2 7888899887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=7.4e-10  Score=103.28  Aligned_cols=184  Identities=22%  Similarity=0.304  Sum_probs=137.2

Q ss_pred             ccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-------------------------cC
Q 011891            9 LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-------------------------IS   63 (475)
Q Consensus         9 L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-------------------------i~   63 (475)
                      |+-.+.-+++|+.+.++.|.- ..+-++.  ..=+.|+.+...+ +.+...|.                         +.
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~-~~i~~~~--~~kptl~t~~v~~-s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALST-ENIVDIE--LLKPTLQTICVHN-TTIQDVPSLLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             cccchHHhhhhheeeeeccch-hheecee--ecCchhheeeeec-ccccccccccchhhhcCccCCCCCccCCceEEecc
Confidence            344556688899999988742 2222211  1124566666654 22222111                         11


Q ss_pred             CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891           64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL  143 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L  143 (475)
                      ..+.|++|+|++|.|+.+..++.-.+.++.|+++.|. +..+. .+..+++|+.||+++|.++++-.+-..+.+.+.|.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            3467999999999999999999999999999999965 44444 388899999999999999988777777889999999


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccch
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIPE  200 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~  200 (475)
                      ++|. ++++. .++++.+|..||+++|+|.++  -..+++++.|+.+.|.+|.+..+|.
T Consensus       360 a~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9986 33333 346788999999999999874  3568999999999999999987764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.67  E-value=5.7e-08  Score=96.76  Aligned_cols=64  Identities=25%  Similarity=0.506  Sum_probs=34.5

Q ss_pred             ccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEcccc-CCcccCcccCCCCCCcEEeeeCCCCCCcccc
Q 011891           39 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELPSSIGCLSRLLELNLGDCKNLKTLPS  107 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~  107 (475)
                      +..+++++.|++++| .++.+|.+.  .+|++|.++++ .++.+|..+  .++|++|++++|..+..+|.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPVLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCCCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence            334566666666666 566666322  34666666553 344555433  24566666666655555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.59  E-value=1e-08  Score=97.70  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=39.6

Q ss_pred             ccCCCCCcEEeccCCCCccCCCC--hhhccCCCCCcEEEEeCCCCCC----CCcC--------cCCCCCCcEEEccccCC
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPN--PSLIQHLNKLVILNLSGCSKLK----SLPE--------ISSAGNIEKILLDGTAI   78 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~--~~~~~~l~~L~~L~L~~c~~l~----~~p~--------i~~l~~L~~L~L~~~~i   78 (475)
                      ...+..++.|+|+++..-++...  -..+.+.+.|+..++++- ..+    .+|+        +..+++|++|+|++|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            44566677777777654332211  112334445555555441 111    1221        11334556666655544


Q ss_pred             c-----ccCcccCCCCCCcEEeeeCCC
Q 011891           79 E-----ELPSSIGCLSRLLELNLGDCK  100 (475)
Q Consensus        79 ~-----~lp~~i~~l~~L~~L~L~~c~  100 (475)
                      .     .+-.-+..+..|++|.|.+|.
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCC
Confidence            3     112223345555555555553

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.5e-07  Score=101.15  Aligned_cols=105  Identities=24%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             CcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEecc
Q 011891          115 LEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLER  192 (475)
Q Consensus       115 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~  192 (475)
                      ++.|+++++.+. .+|..+..+++|+.|+|++|.....+|..++.+++|+.|+|++|+++. +|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            344455555444 344445555555555555554444444444555555555555555543 455555555555555555


Q ss_pred             CCcc-ccchHHhhc-CCcccccccccccc
Q 011891          193 NNFE-RIPESIIRL-SKLSSLLVSYCERL  219 (475)
Q Consensus       193 n~l~-~lp~~i~~l-~~L~~L~l~~c~~l  219 (475)
                      |++. .+|..+... .++..+++.+|..+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            5543 444444332 23344444444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.51  E-value=1.6e-09  Score=105.40  Aligned_cols=108  Identities=21%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             CCCCcCEEEcCCCCCCCccccC--CCCCCCCCEEEecCCC-CCC--cchhhCCCCCCceeEeccCCcc---ccchHHhhc
Q 011891          134 CLSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCA-ITE--LPESLGLLSSLEELYLERNNFE---RIPESIIRL  205 (475)
Q Consensus       134 ~l~~L~~L~L~~c~~l~~l~~~--~~~l~~L~~L~L~~~~-l~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l  205 (475)
                      .+..|+.|+.++|......+..  ..+..+|+.|.+++|+ +++  +-..-.+.+.|+.+++.++...   ++-..-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            3566777777777765543322  1456778888887774 443  3333456777888887777542   233333467


Q ss_pred             CCccccccccccccccc-----C---CCccCcceecccccccCc
Q 011891          206 SKLSSLLVSYCERLQSL-----P---KLPCNLYWLDAQHCTTLE  241 (475)
Q Consensus       206 ~~L~~L~l~~c~~l~~l-----p---~l~~~L~~L~i~~c~~L~  241 (475)
                      +.|+.|.+++|..++..     .   .-...+..+.+.+|+.++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            78888888887765543     1   112345555566665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.47  E-value=1.8e-08  Score=103.43  Aligned_cols=171  Identities=31%  Similarity=0.365  Sum_probs=95.2

Q ss_pred             ccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcE
Q 011891           39 IQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  117 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~  117 (475)
                      +..+++|+.|++.+ +.++.+.. +..+++|++|++++|.|+.+.. +..++.|+.|++.+|. +..+. .+..++.|+.
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence            45566677777766 45666666 6667777777777777665543 4455567777777643 33333 3444666777


Q ss_pred             EEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCC--CceeEeccCC
Q 011891          118 ICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS--LEELYLERNN  194 (475)
Q Consensus       118 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~--L~~L~L~~n~  194 (475)
                      +++++|.+..+... +..+.+++.+.+.+|.....-  ....+..+..+++..+.++.+- .+..+..  |+.+++++|.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCc
Confidence            77777776655543 455666666666666532211  1112223333355555554431 1122222  6666666666


Q ss_pred             ccccchHHhhcCCccccccccc
Q 011891          195 FERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       195 l~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      +..++..+..+..+..|++.++
T Consensus       244 i~~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  244 ISRSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             cccccccccccccccccchhhc
Confidence            6555445555566666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.47  E-value=1.2e-08  Score=97.32  Aligned_cols=206  Identities=22%  Similarity=0.273  Sum_probs=147.0

Q ss_pred             ccccccCCCCCcEEeccCCCCccC-----CCC-----hhhccCCCCCcEEEEeCCCCCCCCc-C----cCCCCCCcEEEc
Q 011891            9 LSESVQHHGKLNQIIMAACNIFTK-----TPN-----PSLIQHLNKLVILNLSGCSKLKSLP-E----ISSAGNIEKILL   73 (475)
Q Consensus         9 L~~~~~~l~~L~~L~Ls~~~~l~~-----~p~-----~~~~~~l~~L~~L~L~~c~~l~~~p-~----i~~l~~L~~L~L   73 (475)
                      +-+.+.+.+.|+..++++  ..+.     +|.     ...+..+++|++||||+|-.-...+ .    +.++..|++|+|
T Consensus        50 i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L  127 (382)
T KOG1909|consen   50 IAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL  127 (382)
T ss_pred             HHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence            345566777899999886  2332     332     1234567799999999964333322 2    457899999999


Q ss_pred             cccCCccc--------------CcccCCCCCCcEEeeeCCCCCCc-----cccccCCCCCCcEEEeeCcCCc-----cCC
Q 011891           74 DGTAIEEL--------------PSSIGCLSRLLELNLGDCKNLKT-----LPSSLCKLKSLEEICLTGSAIE-----ELP  129 (475)
Q Consensus        74 ~~~~i~~l--------------p~~i~~l~~L~~L~L~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~-----~lp  129 (475)
                      .+|.+...              ..-+..-+.|+++....|. +..     +...+...+.|+.+.+..|.|.     .+.
T Consensus       128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~  206 (382)
T KOG1909|consen  128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA  206 (382)
T ss_pred             hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence            99987521              2234566889999998854 433     3345667789999999999876     234


Q ss_pred             cccCCCCCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCC-----cchhh-CCCCCCceeEeccCCcc---
Q 011891          130 SPIECLSALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESL-GLLSSLEELYLERNNFE---  196 (475)
Q Consensus       130 ~~i~~l~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~---  196 (475)
                      ..+..+++|+.|||.+|.....    +...+..++.|+.|++++|.+..     +...+ ...++|+.|.+.+|.++   
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            5678899999999999874332    22334567889999999999886     33333 45789999999999985   


Q ss_pred             --ccchHHhhcCCcccccccccc
Q 011891          197 --RIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       197 --~lp~~i~~l~~L~~L~l~~c~  217 (475)
                        .+..++...+.|..|+|++|.
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCccc
Confidence              344567778999999999995

>PLN03150 hypothetical protein; Provisional

Probab=98.45  E-value=3.6e-07  Score=98.31  Aligned_cols=106  Identities=25%  Similarity=0.334  Sum_probs=87.9

Q ss_pred             CCcEEEccccCCc-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcC
Q 011891           67 NIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLG  144 (475)
Q Consensus        67 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~  144 (475)
                      .++.|+|+++.+. .+|..+..+++|+.|+|++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4778899988887 67888889999999999998777788888899999999999999888 688889999999999999


Q ss_pred             CCCCCCccccCCCC-CCCCCEEEecCCCC
Q 011891          145 DCKSLKSLKLPFDG-LYSLTYLYLTDCAI  172 (475)
Q Consensus       145 ~c~~l~~l~~~~~~-l~~L~~L~L~~~~l  172 (475)
                      +|.....+|..+.. ..++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            98877778776644 34567788887753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.31  E-value=3.7e-07  Score=66.61  Aligned_cols=58  Identities=34%  Similarity=0.470  Sum_probs=39.3

Q ss_pred             CCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccc
Q 011891          160 YSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~  217 (475)
                      ++|+.|++++|+++++| ..+..+++|++|++++|+++.++ ..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            35667777777777765 35566777777777777777666 356677777777777663

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.8e-08  Score=94.13  Aligned_cols=151  Identities=19%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             CCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc-CCccC--CcccCCCCCcCEE
Q 011891           67 NIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEEL--PSPIECLSALCVL  141 (475)
Q Consensus        67 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~l--p~~i~~l~~L~~L  141 (475)
                      .|++|||+...|+  .+...+..+.+|+.|.|.+...-..+-..++.-.+|+.|+++.+ ++++.  .--+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3566666665554  33333445556666666554433334444555555666666554 33321  1123445555555


Q ss_pred             EcCCCCCCCcccc-CC-CCCCCCCEEEecCCC--CC--CcchhhCCCCCCceeEeccCCc-c-ccchHHhhcCCcccccc
Q 011891          142 DLGDCKSLKSLKL-PF-DGLYSLTYLYLTDCA--IT--ELPESLGLLSSLEELYLERNNF-E-RIPESIIRLSKLSSLLV  213 (475)
Q Consensus       142 ~L~~c~~l~~l~~-~~-~~l~~L~~L~L~~~~--l~--~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~i~~l~~L~~L~l  213 (475)
                      +++.|......-. .. .--+.|+.|+|+++.  +.  .+......+++|.+|||++|.. + ..-..+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            5555543222100 00 112345555565552  11  1333334556666666666542 2 22234455666666666


Q ss_pred             cccc
Q 011891          214 SYCE  217 (475)
Q Consensus       214 ~~c~  217 (475)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            6664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.22  E-value=1.4e-06  Score=63.56  Aligned_cols=56  Identities=27%  Similarity=0.498  Sum_probs=24.2

Q ss_pred             CCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCc
Q 011891           67 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGS  123 (475)
Q Consensus        67 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~  123 (475)
                      +|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            34444444444444443 33444444444444432 22222 23344444444444444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.3e-08  Score=95.15  Aligned_cols=173  Identities=21%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             CCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCc-ccCcccCCCCCCcEEeeeCCCCCCccc--cccCCCCCCcE
Q 011891           44 KLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEE  117 (475)
Q Consensus        44 ~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~  117 (475)
                      .|++|||+. ..++.  +-. ++.+.+|+.|.|.++.+. .+...+.+-.+|+.|+|+.|..+++..  -.+.+++.|..
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            466777765 33321  111 345667777777777665 344556667778888888877766543  23456777888


Q ss_pred             EEeeCcCCcc--CCcccCC-CCCcCEEEcCCCCCCCc---cccCCCCCCCCCEEEecCCC-CCC-cchhhCCCCCCceeE
Q 011891          118 ICLTGSAIEE--LPSPIEC-LSALCVLDLGDCKSLKS---LKLPFDGLYSLTYLYLTDCA-ITE-LPESLGLLSSLEELY  189 (475)
Q Consensus       118 L~l~~~~i~~--lp~~i~~-l~~L~~L~L~~c~~l~~---l~~~~~~l~~L~~L~L~~~~-l~~-lp~~l~~l~~L~~L~  189 (475)
                      |+++.|.+..  +...+.+ -.+|+.|+++||...-.   +......+++|..|||++|. ++. ....+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            8888776541  1111111 24678888888763211   11112578889999999985 333 556678899999999


Q ss_pred             eccCCcc--ccchHHhhcCCcccccccccc
Q 011891          190 LERNNFE--RIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       190 L~~n~l~--~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +++|-.-  ..--.+...++|.+|++.+|-
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9998431  111135667899999999884

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=2.6e-07  Score=94.86  Aligned_cols=169  Identities=28%  Similarity=0.342  Sum_probs=95.0

Q ss_pred             CCCCcEEEEeCCCCCCC-CcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891           42 LNKLVILNLSGCSKLKS-LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL  120 (475)
Q Consensus        42 l~~L~~L~L~~c~~l~~-~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l  120 (475)
                      +..++.+++..+ .+.. ...+..+.+|+.|++.+|.|+.+...+..+++|++|++++|. ++.+. .+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhee
Confidence            344555555552 3333 223556677777777777777666556667777777777743 44443 3555666777777


Q ss_pred             eCcCCccCCcccCCCCCcCEEEcCCCCCCCccc-cCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891          121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       121 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~-~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      .+|.|+.+. .+..+..|+.+++++|.....-+ . ...+.+|+.+.+.++.+..+. .+..+..+..+++..|.++.+-
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence            777776553 23336677777777766332211 1 345666777777777666542 2233444444466666665332


Q ss_pred             hHHhhcC--Ccccccccccc
Q 011891          200 ESIIRLS--KLSSLLVSYCE  217 (475)
Q Consensus       200 ~~i~~l~--~L~~L~l~~c~  217 (475)
                       .+..+.  .|+.+++.++.
T Consensus       225 -~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  225 -GLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             -CcccchhHHHHHHhcccCc
Confidence             112222  26667676654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.16  E-value=4e-08  Score=95.76  Aligned_cols=229  Identities=20%  Similarity=0.288  Sum_probs=152.2

Q ss_pred             cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--c-CCCCCCcEEEccccC-Cc--cc
Q 011891            8 QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--I-SSAGNIEKILLDGTA-IE--EL   81 (475)
Q Consensus         8 ~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i-~~l~~L~~L~L~~~~-i~--~l   81 (475)
                      .+-....+++++++|++.+|.++++....+....+++|+.|+|..|..++...-  + ..+++|++|+++.+. |.  .+
T Consensus       155 slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv  234 (483)
T KOG4341|consen  155 SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGV  234 (483)
T ss_pred             hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcc
Confidence            344446689999999999999888776656667899999999999988876432  2 378899999998863 33  23


Q ss_pred             CcccCCCCCCcEEeeeCCCCC--------------------------Cccc--cccCCCCCCcEEEeeCcCC-cc--CCc
Q 011891           82 PSSIGCLSRLLELNLGDCKNL--------------------------KTLP--SSLCKLKSLEEICLTGSAI-EE--LPS  130 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l--------------------------~~lp--~~l~~l~~L~~L~l~~~~i-~~--lp~  130 (475)
                      ......+..++.+.++||..+                          +...  ..-..+..|+.|+.+++.- +.  +-.
T Consensus       235 ~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a  314 (483)
T KOG4341|consen  235 QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA  314 (483)
T ss_pred             hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence            233344555566655555432                          2111  0112356677777776532 21  112


Q ss_pred             ccCCCCCcCEEEcCCCCCCCccccCC--CCCCCCCEEEecCCCCCC---cchhhCCCCCCceeEeccCCcc-c-----cc
Q 011891          131 PIECLSALCVLDLGDCKSLKSLKLPF--DGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERNNFE-R-----IP  199 (475)
Q Consensus       131 ~i~~l~~L~~L~L~~c~~l~~l~~~~--~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~n~l~-~-----lp  199 (475)
                      ...+..+|+.|.+++|+.+.+.....  .+++.|+.+++.+|....   +-..-.+++.|+.|.+++|... .     +.
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            24567899999999999877654443  678899999999996543   4444568899999999998642 1     22


Q ss_pred             hHHhhcCCcccccccccccccccCCCccCcceecccccccCccc
Q 011891          200 ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL  243 (475)
Q Consensus       200 ~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l  243 (475)
                      ..-.....|..+.+++|+.+..-     .|++|  ..|+.|+.+
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~-----~Le~l--~~c~~Leri  431 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDA-----TLEHL--SICRNLERI  431 (483)
T ss_pred             hccccccccceeeecCCCCchHH-----HHHHH--hhCccccee
Confidence            23345678999999999765542     23433  457777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.1e-07  Score=98.32  Aligned_cols=16  Identities=38%  Similarity=0.731  Sum_probs=10.4

Q ss_pred             ccCCCCCcEEEEeCCC
Q 011891           39 IQHLNKLVILNLSGCS   54 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~   54 (475)
                      +..+++|++|.|.||.
T Consensus       105 ifpF~sLr~LElrg~~  120 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCD  120 (1096)
T ss_pred             eccccceeeEEecCcc
Confidence            4456677777777764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=5.6e-08  Score=100.58  Aligned_cols=176  Identities=26%  Similarity=0.265  Sum_probs=113.9

Q ss_pred             ccccCCCCCcEEeccCCCCccCCCChhhccCCC-CCcEEEEeCCCCCCCC--------cCcC---CCCCCcEEEccccCC
Q 011891           11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSL--------PEIS---SAGNIEKILLDGTAI   78 (475)
Q Consensus        11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~-~L~~L~L~~c~~l~~~--------p~i~---~l~~L~~L~L~~~~i   78 (475)
                      -.+..++.||+|.|.+|..-+.    .++..++ .|+.|.-.  +++..+        .++.   -...|...+.++|.+
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~----~GL~~lr~qLe~LIC~--~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTA----KGLQELRHQLEKLICH--NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL  176 (1096)
T ss_pred             ceeccccceeeEEecCcchhhh----hhhHHHHHhhhhhhhh--ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence            3466788999999998854331    1222111 23333221  222222        1122   124567777888888


Q ss_pred             cccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891           79 EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG  158 (475)
Q Consensus        79 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~  158 (475)
                      +.+..++.-++.|+.|+|+.|+. +... .+..++.|++|||++|.++.+|.--..-.+|+.|.+++|. ++.+- .+.+
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~  252 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLR-GIEN  252 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhh-hHHh
Confidence            88888888889999999998653 4443 6778888999999999888887632222348888888776 33332 3457


Q ss_pred             CCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCcc
Q 011891          159 LYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +.+|+.||+++|-+.+.  ...+..+..|..|.|.||.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            78888888888877662  234566778888888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=9.6e-06  Score=54.69  Aligned_cols=40  Identities=38%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891          160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      ++|+.|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3578888888888888777888888888888888887665

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=2e-06  Score=80.68  Aligned_cols=160  Identities=20%  Similarity=0.215  Sum_probs=92.3

Q ss_pred             CCCCCcEEEccccCCc---ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc--cCCcccCCCCCc
Q 011891           64 SAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSAL  138 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L  138 (475)
                      ..+.+++|+|.+|.|.   ++...+.+++.|++|+|+.|..-..+-..-..+.+|++|.+.|+.+.  .+.+.+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4566666677666665   34445556677777777654322221111124456666666666544  444455556666


Q ss_pred             CEEEcCCCCC---------------------------CCcccc--CCCCCCCCCEEEecCCCCCCc--chhhCCCCCCce
Q 011891          139 CVLDLGDCKS---------------------------LKSLKL--PFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEE  187 (475)
Q Consensus       139 ~~L~L~~c~~---------------------------l~~l~~--~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~  187 (475)
                      +.|+++.|..                           ......  ...-++++..+-+..|.+.+.  ......++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            6666655521                           000000  002346677777777776653  233445677778


Q ss_pred             eEeccCCccccc--hHHhhcCCcccccccccccccccC
Q 011891          188 LYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       188 L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      |+|+.+++.++.  ..+..++.|..|.+.+++....+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            888888886554  356778888888888887665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=8.9e-06  Score=87.72  Aligned_cols=109  Identities=19%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCCCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC--cccCCCCCcC
Q 011891           64 SAGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP--SPIECLSALC  139 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~  139 (475)
                      .+|.|+.|.+.+-.+.  ++-....++++|..||++++ +++.+ .+++++++|+.|.+.+-.+..-.  ..+..|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            3455555555443322  22223334455555555552 23333 34555555555555444433221  1234455555


Q ss_pred             EEEcCCCCCCCcc------ccCCCCCCCCCEEEecCCCCCC
Q 011891          140 VLDLGDCKSLKSL------KLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus       140 ~L~L~~c~~l~~l------~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      .||++.-.....-      -.....+|.|+.||.+++.+.+
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            5555544322211      0111346677777777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.82  E-value=4.2e-06  Score=90.22  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=99.2

Q ss_pred             CCCCcEEEccccCC-c-ccCcccC-CCCCCcEEeeeCCCCC-CccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891           65 AGNIEKILLDGTAI-E-ELPSSIG-CLSRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV  140 (475)
Q Consensus        65 l~~L~~L~L~~~~i-~-~lp~~i~-~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  140 (475)
                      -.+|++|++++... . .-|..++ .||+|++|.+.+-... .++-.-..++++|..||+++|+++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            46888888887532 2 2333343 4789999999873321 12334456788999999999999888 78888999999


Q ss_pred             EEcCCCCCCCcc-ccCCCCCCCCCEEEecCCCCCCcc-------hhhCCCCCCceeEeccCCcc--ccchHHhhcCCccc
Q 011891          141 LDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-------ESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSS  210 (475)
Q Consensus       141 L~L~~c~~l~~l-~~~~~~l~~L~~L~L~~~~l~~lp-------~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~  210 (475)
                      |.+.+-...... -..+-++++|+.||+|.......+       +.-..+++|+.||.+++.+.  .+...+..-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            888764422200 012346888999999888655433       22345889999999988774  23334444566666


Q ss_pred             cccccc
Q 011891          211 LLVSYC  216 (475)
Q Consensus       211 L~l~~c  216 (475)
                      +.+-+|
T Consensus       280 i~~~~~  285 (699)
T KOG3665|consen  280 IAALDC  285 (699)
T ss_pred             hhhhhh
Confidence            654443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=3.2e-05  Score=52.17  Aligned_cols=41  Identities=27%  Similarity=0.426  Sum_probs=34.0

Q ss_pred             CCCceeEeccCCccccchHHhhcCCcccccccccccccccCC
Q 011891          183 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK  224 (475)
Q Consensus       183 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~  224 (475)
                      ++|++|++++|+|+.+|..+++|++|+.|++++| .+++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            4799999999999999988999999999999999 4555543

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=1.4e-05  Score=75.06  Aligned_cols=109  Identities=19%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             CCCCcEEEccccCCcccCc--cc-CCCCCCcEEeeeCCCCCC--ccccccCCCCCCcEEEeeCcCCccCCccc-CCCCCc
Q 011891           65 AGNIEKILLDGTAIEELPS--SI-GCLSRLLELNLGDCKNLK--TLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSAL  138 (475)
Q Consensus        65 l~~L~~L~L~~~~i~~lp~--~i-~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L  138 (475)
                      +.-++.|.+.++.|...-.  .+ ...+.++.|+|.+|....  ++...+.+++.|++|+++.|.+.....++ ..+.+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3445566666666553221  12 246789999999975432  34445678999999999999877544443 467789


Q ss_pred             CEEEcCCCCCCCc-cccCCCCCCCCCEEEecCCCCC
Q 011891          139 CVLDLGDCKSLKS-LKLPFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus       139 ~~L~L~~c~~l~~-l~~~~~~l~~L~~L~L~~~~l~  173 (475)
                      +.|-|.|...... .......+|.++.|.++.|++.
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            9999987552111 1122356677778888777443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.54  E-value=3.7e-06  Score=70.26  Aligned_cols=111  Identities=18%  Similarity=0.301  Sum_probs=74.6

Q ss_pred             CCcEEeccCCCCccCCCC-hhhccCCCCCcEEEEeCCCCCCCCcC-cC-CCCCCcEEEccccCCcccCcccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPN-PSLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGTAIEELPSSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~-~~~~~~l~~L~~L~L~~c~~l~~~p~-i~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   94 (475)
                      .+-.++|+.|.. ..+++ ...+.....|+..+|++ +.++++|. +. ..+.++.|++++|.|..+|..+..++.|+.|
T Consensus        28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchh-hHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            345567777643 22222 22344556677778887 56777776 43 5567788888888888888877788888888


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP  131 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~  131 (475)
                      +++.|+ +...|..+..+.+|-.|+..++.+.++|..
T Consensus       106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            887753 455666666677777777777777766654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.42  E-value=1.6e-05  Score=66.55  Aligned_cols=59  Identities=29%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891          158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      ..+.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..++
T Consensus        75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            34467778888888888888888888888888888888877777777777777777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.31  E-value=2.7e-05  Score=81.20  Aligned_cols=108  Identities=30%  Similarity=0.396  Sum_probs=55.1

Q ss_pred             CCCCcEEEEeCCCCCCCC---cCcCCCCCCcEEEcccc--CCcc----cCcccCCCCCCcEEeeeCCCCCCccc-ccc-C
Q 011891           42 LNKLVILNLSGCSKLKSL---PEISSAGNIEKILLDGT--AIEE----LPSSIGCLSRLLELNLGDCKNLKTLP-SSL-C  110 (475)
Q Consensus        42 l~~L~~L~L~~c~~l~~~---p~i~~l~~L~~L~L~~~--~i~~----lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l-~  110 (475)
                      ++.|+.|.+.+|..+...   +....+++|+.|+++++  .+..    .......+.+|+.|+++.|..++..- ..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            556666666666555542   22335666666666552  1111    11123345666677776665433221 111 1


Q ss_pred             CCCCCcEEEeeCcC-Cc--cCCcccCCCCCcCEEEcCCCCCC
Q 011891          111 KLKSLEEICLTGSA-IE--ELPSPIECLSALCVLDLGDCKSL  149 (475)
Q Consensus       111 ~l~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~L~~c~~l  149 (475)
                      .+++|++|.+.++. ++  .+-.....+++|++|++++|..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            25667777655554 33  22223345566777777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.25  E-value=0.00012  Score=68.15  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=18.2

Q ss_pred             CCCCCcEEeeeCCCCCCccccc----cCCCCCCcEEEeeCcCC
Q 011891           87 CLSRLLELNLGDCKNLKTLPSS----LCKLKSLEEICLTGSAI  125 (475)
Q Consensus        87 ~l~~L~~L~L~~c~~l~~lp~~----l~~l~~L~~L~l~~~~i  125 (475)
                      +|++|+..+|++|-.-...|+.    |+..+.|++|.+.+|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            4455555555554443333322    33444455555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.13  E-value=9.9e-05  Score=76.93  Aligned_cols=111  Identities=25%  Similarity=0.360  Sum_probs=76.0

Q ss_pred             CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCC-CCCCCCcC-----cCCCCCCcEEEccccC-Ccc--cCccc
Q 011891           15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC-SKLKSLPE-----ISSAGNIEKILLDGTA-IEE--LPSSI   85 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c-~~l~~~p~-----i~~l~~L~~L~L~~~~-i~~--lp~~i   85 (475)
                      .++.|+.|.+.+|..++..........++.|+.|++++| ......+.     ...+++|+.|+++++. ++.  +....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478899999999888776543345677889999999883 33333331     2356888999998876 542  22222


Q ss_pred             CCCCCCcEEeeeCCCCCCc--cccccCCCCCCcEEEeeCcCC
Q 011891           86 GCLSRLLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAI  125 (475)
Q Consensus        86 ~~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i  125 (475)
                      ..+++|++|.+.+|..++.  +-.....++.|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3478999999888876432  333345678899999987754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.03  E-value=0.0013  Score=58.90  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=18.8

Q ss_pred             CCCCCCEEEecCCCCCCcc----hhhCCCCCCceeEeccC
Q 011891          158 GLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERN  193 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~lp----~~l~~l~~L~~L~L~~n  193 (475)
                      .++.|+.|.+-+|+++.-.    -.+..+++|+.||..+=
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            3445555555555544421    12455667777776553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.99  E-value=0.0014  Score=58.79  Aligned_cols=54  Identities=19%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             CCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCC-CCCCcEEeeeC
Q 011891           44 KLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC-LSRLLELNLGD   98 (475)
Q Consensus        44 ~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~   98 (475)
                      ....+||++ +.+..++.+..++.|..|.|.+|+|+.+...+.. +++|..|.|.+
T Consensus        43 ~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   43 QFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccceecccc-cchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            344555655 3455555555556666666666666555444332 34455555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.79  E-value=0.00047  Score=64.34  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=97.3

Q ss_pred             CCCCCcEEEccccCCc-----ccCcccCCCCCCcEEeeeCCC----------CCCccccccCCCCCCcEEEeeCcCCc-c
Q 011891           64 SAGNIEKILLDGTAIE-----ELPSSIGCLSRLLELNLGDCK----------NLKTLPSSLCKLKSLEEICLTGSAIE-E  127 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~----------~l~~lp~~l~~l~~L~~L~l~~~~i~-~  127 (475)
                      .+..++.++|++|.|.     .+...|.+-.+|+..++++-.          ++.-+...+..++.|+..+++.|.+. +
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3455555666655543     233445555666666666521          11122345678999999999999887 4


Q ss_pred             CCc----ccCCCCCcCEEEcCCCCCCCcccc-------------CCCCCCCCCEEEecCCCCCCcch-----hhCCCCCC
Q 011891          128 LPS----PIECLSALCVLDLGDCKSLKSLKL-------------PFDGLYSLTYLYLTDCAITELPE-----SLGLLSSL  185 (475)
Q Consensus       128 lp~----~i~~l~~L~~L~L~~c~~l~~l~~-------------~~~~l~~L~~L~L~~~~l~~lp~-----~l~~l~~L  185 (475)
                      .|.    -|+.-+.|.+|.+++|..-..-..             ....-|.|+......|++...+.     .+..-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            443    467788999999998873211110             11345779999998888876433     23333588


Q ss_pred             ceeEeccCCcc--c---c-chHHhhcCCcccccccccc
Q 011891          186 EELYLERNNFE--R---I-PESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       186 ~~L~L~~n~l~--~---l-p~~i~~l~~L~~L~l~~c~  217 (475)
                      +.+.+..|.|.  .   + -..+..+.+|+.|+|.+|.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            99999999874  1   1 1234567888888888774

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.00023  Score=66.57  Aligned_cols=83  Identities=25%  Similarity=0.332  Sum_probs=61.8

Q ss_pred             CCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc--hHHhhcCCccccc
Q 011891          135 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLL  212 (475)
Q Consensus       135 l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~  212 (475)
                      +.+.++|+..||. +.++.. ...|+.|+.|.|+-|.|+.+. .+..+++|++|+|..|.|.++.  .-++++++|+.|+
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445566666665 333322 257888999999999999873 4678999999999999988775  3568899999999


Q ss_pred             cccccccc
Q 011891          213 VSYCERLQ  220 (475)
Q Consensus       213 l~~c~~l~  220 (475)
                      |..|+--.
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            98876443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00017  Score=67.40  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             CCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc--ccCCCCCCcE
Q 011891           16 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS--SIGCLSRLLE   93 (475)
Q Consensus        16 l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~   93 (475)
                      +.+.+.|+.=+|    .+.|++....++.|++|.|+- ++++++..+..+++|++|+|..|.|..+..  -+.++++|+.
T Consensus        18 l~~vkKLNcwg~----~L~DIsic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGC----GLDDISICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCC----CccHHHHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            455666666665    233445566777777777776 456666666777777777777777765543  3456666666


Q ss_pred             EeeeCCCCCCcccc-----ccCCCCCCcEEE
Q 011891           94 LNLGDCKNLKTLPS-----SLCKLKSLEEIC  119 (475)
Q Consensus        94 L~L~~c~~l~~lp~-----~l~~l~~L~~L~  119 (475)
                      |-|..|+--..-+.     .+..|++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            66666554433322     233455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.0036  Score=58.27  Aligned_cols=82  Identities=26%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CCCCCCEEEecCC--CCCC-cchhhCCCCCCceeEeccCCcc---ccchHHhhcCCcccccccccccccccC-------C
Q 011891          158 GLYSLTYLYLTDC--AITE-LPESLGLLSSLEELYLERNNFE---RIPESIIRLSKLSSLLVSYCERLQSLP-------K  224 (475)
Q Consensus       158 ~l~~L~~L~L~~~--~l~~-lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~l~~c~~l~~lp-------~  224 (475)
                      .+++|+.|.++.|  .+.. ++.....+++|++|++++|++.   +++ .+..+.+|..|++.+|.-.+ +-       .
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~  140 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFL  140 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHH
Confidence            5677888888888  4443 4444556688888888888875   333 46778888899998886444 21       2


Q ss_pred             CccCcceecccccccCc
Q 011891          225 LPCNLYWLDAQHCTTLE  241 (475)
Q Consensus       225 l~~~L~~L~i~~c~~L~  241 (475)
                      +.++|++|+-.++..=+
T Consensus       141 ll~~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen  141 LLPSLKYLDGCDVDGEE  157 (260)
T ss_pred             HhhhhccccccccCCcc
Confidence            45667777665554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.67  E-value=0.01  Score=55.27  Aligned_cols=86  Identities=22%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             CCCcCEEEcCCC--CCCCccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccc----hHHhhcC
Q 011891          135 LSALCVLDLGDC--KSLKSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP----ESIIRLS  206 (475)
Q Consensus       135 l~~L~~L~L~~c--~~l~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp----~~i~~l~  206 (475)
                      +++|+.|.++.|  .....++.....+++|++|++++|++..+  -..+..+.+|..|++..|..+.+-    ..+.-++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            455566666655  33333343445557777777777776652  123456677788888887654332    2345578


Q ss_pred             Cccccccccccccc
Q 011891          207 KLSSLLVSYCERLQ  220 (475)
Q Consensus       207 ~L~~L~l~~c~~l~  220 (475)
                      +|++|+-..+..-.
T Consensus       144 ~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen  144 SLKYLDGCDVDGEE  157 (260)
T ss_pred             hhccccccccCCcc
Confidence            88888877665433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.10  E-value=0.0086  Score=33.64  Aligned_cols=18  Identities=50%  Similarity=0.623  Sum_probs=9.9

Q ss_pred             CceeEeccCCccccchHH
Q 011891          185 LEELYLERNNFERIPESI  202 (475)
Q Consensus       185 L~~L~L~~n~l~~lp~~i  202 (475)
                      |++|+|++|+++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.88  E-value=0.075  Score=44.43  Aligned_cols=79  Identities=14%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCC
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLS   89 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~   89 (475)
                      +..+++|+.+.+..  .++.++. ..+.++++|+.+.+.+  .+..++.  +..+++|+.+.+.. .+..++. .+..++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~-~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGE-NAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-T-TTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC--CeeEeCh-hhcccccccccccccc--cccccceeeeecccccccccccc-cccccccccccccc
Confidence            34455555555542  2334433 2344555555555554  2444443  33444555555543 3333322 223344


Q ss_pred             CCcEEeee
Q 011891           90 RLLELNLG   97 (475)
Q Consensus        90 ~L~~L~L~   97 (475)
                      +|+.+.+.
T Consensus        82 ~l~~i~~~   89 (129)
T PF13306_consen   82 NLKNIDIP   89 (129)
T ss_dssp             TECEEEET
T ss_pred             cccccccC
Confidence            55555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.50  E-value=0.15  Score=42.51  Aligned_cols=101  Identities=15%  Similarity=0.276  Sum_probs=58.3

Q ss_pred             hccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcccc-ccCCCC
Q 011891           38 LIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLCKLK  113 (475)
Q Consensus        38 ~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~  113 (475)
                      .+.++.+|+.+.+..  .++.++.  +..+++|+.+.+..+ +..++. .+..+++|+.+.+.+  .+..++. .+..++
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence            456778899998874  4667766  668889999999875 776655 566777899999965  4445544 355689


Q ss_pred             CCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCC
Q 011891          114 SLEEICLTGSAIEELPS-PIECLSALCVLDLGD  145 (475)
Q Consensus       114 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~  145 (475)
                      +|+.+.+..+ +..++. .+.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            9999999764 655544 35555 888887764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.43  E-value=0.015  Score=32.62  Aligned_cols=17  Identities=35%  Similarity=0.630  Sum_probs=7.5

Q ss_pred             CcEEEccccCCcccCcc
Q 011891           68 IEKILLDGTAIEELPSS   84 (475)
Q Consensus        68 L~~L~L~~~~i~~lp~~   84 (475)
                      |++|+|++|.++.+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.25  E-value=0.018  Score=31.35  Aligned_cols=14  Identities=50%  Similarity=0.719  Sum_probs=12.7

Q ss_pred             CCCCCccccccccc
Q 011891            1 MPHSNIEQLSESVQ   14 (475)
Q Consensus         1 l~~s~l~~L~~~~~   14 (475)
                      |++|++++||+|++
T Consensus         7 m~~S~lekLW~G~k   20 (20)
T PF07725_consen    7 MPYSKLEKLWEGVK   20 (20)
T ss_pred             CCCCChHHhcCccC
Confidence            78999999999875

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.80  E-value=0.042  Score=28.69  Aligned_cols=13  Identities=31%  Similarity=0.406  Sum_probs=4.3

Q ss_pred             CceeEeccCCccc
Q 011891          185 LEELYLERNNFER  197 (475)
Q Consensus       185 L~~L~L~~n~l~~  197 (475)
                      |+.|+|++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.30  E-value=0.068  Score=27.90  Aligned_cols=17  Identities=35%  Similarity=0.458  Sum_probs=9.1

Q ss_pred             CCCCEEEecCCCCCCcc
Q 011891          160 YSLTYLYLTDCAITELP  176 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp  176 (475)
                      ++|+.|+|++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35777777777776654

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.95  E-value=0.044  Score=49.31  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC--cCcC-CCCCCcEEEcccc-CCccc-CcccCCCCCC
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL--PEIS-SAGNIEKILLDGT-AIEEL-PSSIGCLSRL   91 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~--p~i~-~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L   91 (475)
                      ..++.+|-+++....+  .+..+.+++.++.|.+.+|..+...  ..++ -.++|+.|+|++| +|++- -..+..+++|
T Consensus       101 ~~IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             ceEEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            3466777777543222  2344667777888888888776652  2233 4578888888876 56632 2245677888


Q ss_pred             cEEeeeCC
Q 011891           92 LELNLGDC   99 (475)
Q Consensus        92 ~~L~L~~c   99 (475)
                      +.|.+.+-
T Consensus       179 r~L~l~~l  186 (221)
T KOG3864|consen  179 RRLHLYDL  186 (221)
T ss_pred             HHHHhcCc
Confidence            88887763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.56  E-value=0.051  Score=48.94  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             CCCCCceeEeccCC-cccc-chHHhhcCCcccccccccc
Q 011891          181 LLSSLEELYLERNN-FERI-PESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       181 ~l~~L~~L~L~~n~-l~~l-p~~i~~l~~L~~L~l~~c~  217 (475)
                      ..++|+.|+|++|. |++- -..+.++++|+.|.|.+-+
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            34556666666653 4321 1456667777777776544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.98  E-value=0.0043  Score=64.39  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=15.5

Q ss_pred             CCCceeEeccCCcc-----ccchHHhhcCCccccccccc
Q 011891          183 SSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       183 ~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c  216 (475)
                      ..++.++++.|.|+     .+...+..++.++.|.++++
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            34455555555442     23333444445555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.92  E-value=0.36  Score=28.04  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=13.6

Q ss_pred             CCCCceeEeccCCccccchH
Q 011891          182 LSSLEELYLERNNFERIPES  201 (475)
Q Consensus       182 l~~L~~L~L~~n~l~~lp~~  201 (475)
                      +++|+.|+|++|+++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.92  E-value=0.36  Score=28.04  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=13.6

Q ss_pred             CCCCceeEeccCCccccchH
Q 011891          182 LSSLEELYLERNNFERIPES  201 (475)
Q Consensus       182 l~~L~~L~L~~n~l~~lp~~  201 (475)
                      +++|+.|+|++|+++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.58  E-value=0.62  Score=26.99  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=14.0

Q ss_pred             CCCCcEEEccccCCcccCcc
Q 011891           65 AGNIEKILLDGTAIEELPSS   84 (475)
Q Consensus        65 l~~L~~L~L~~~~i~~lp~~   84 (475)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.58  E-value=0.62  Score=26.99  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=14.0

Q ss_pred             CCCCcEEEccccCCcccCcc
Q 011891           65 AGNIEKILLDGTAIEELPSS   84 (475)
Q Consensus        65 l~~L~~L~L~~~~i~~lp~~   84 (475)
                      +++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.00  E-value=0.032  Score=51.31  Aligned_cols=84  Identities=23%  Similarity=0.173  Sum_probs=59.3

Q ss_pred             CCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccc
Q 011891          134 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV  213 (475)
Q Consensus       134 ~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l  213 (475)
                      .....+.||++.+. +..+...++.+..|..|+++.+.+.-+|.+.+.+..+..+++..|+.+..|.+.++.++++++++
T Consensus        40 ~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34445555555544 22233344455667778888888877888888888888888888888888888888888888888


Q ss_pred             ccccc
Q 011891          214 SYCER  218 (475)
Q Consensus       214 ~~c~~  218 (475)
                      ..++.
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            77653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	475
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 53  CSKLKSLPEISSA-GNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL--------- 102
            + L  LP+       +E + L    +  LP+SI  L+RL EL++  C  L         
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 103 -----------------------KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALC 139
                                  ++LP+S+  L++L+ + +  S +  L   I  L  L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 140 VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 171
            LDL  C +L++    F G   L  L L DC+
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  154 bits (391), Expect = 3e-43
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 14/206 (6%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           P     L+ L  + +     L  LP  +     +E + L    +  LP+SI  L+RL EL
Sbjct: 97  PDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 95  NLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 145
           ++  C  L  LP  L           L +L+ + L  + I  LP+ I  L  L  L + +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215

Query: 146 CKSLKSLKLPFDGLYSLTYLYLTDC-AITELPESLGLLSSLEELYL-ERNNFERIPESII 203
              L +L      L  L  L L  C A+   P   G  + L+ L L + +N   +P  I 
Sbjct: 216 SP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 204 RLSKLSSLLVSYCERLQSLPKLPCNL 229
           RL++L  L +  C  L  LP L   L
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  148 bits (377), Expect = 4e-41
 Identities = 51/256 (19%), Positives = 90/256 (35%), Gaps = 25/256 (9%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP--- 60
           + +    + +    +         +   +  N       N   I   +    LK+     
Sbjct: 23  TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------SNNPQIETRT-GRALKATADLL 75

Query: 61  EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120
           E ++      + L    + + P     LS L  + +     L  LP ++ +   LE + L
Sbjct: 76  EDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTL 134

Query: 121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSL---------KLPFDGLYSLTYLYLTDCA 171
             + +  LP+ I  L+ L  L +  C  L  L              GL +L  L L    
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 172 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP----KLPC 227
           I  LP S+  L +L+ L +  +    +  +I  L KL  L +  C  L++ P        
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA- 253

Query: 228 NLYWLDAQHCTTLESL 243
            L  L  + C+ L +L
Sbjct: 254 PLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (336), Expect = 2e-35
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 19/229 (8%)

Query: 3   HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEI 62
            + + +L +++Q    L  + +A   +      P+ I  LN+L  L++  C +L  LPE 
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARNPL---RALPASIASLNRLRELSIRACPELTELPE- 168

Query: 63  SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 122
               + +                  L  L  L L     +++LP+S+  L++L+ + +  
Sbjct: 169 -PLASTD-----------ASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRN 215

Query: 123 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC-AITELPESLGL 181
           S +  L   I  L  L  LDL  C +L++    F G   L  L L DC  +  LP  +  
Sbjct: 216 SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 182 LSSLEELYLERN-NFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 229
           L+ LE+L L    N  R+P  I +L     +LV    + Q     P   
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (298), Expect = 5e-30
 Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
             H +    L   G + L+   +                       +    R    +   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHD----------------------VLSQWQRHYNADR-- 43

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS--ALCVLDLGDCKSLKSLKLPF 156
             N            + +    TG A++     +E  +      L+L     L       
Sbjct: 44  --NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQA 100

Query: 157 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216
             L  L ++ +    + ELP+++   + LE L L RN    +P SI  L++L  L +  C
Sbjct: 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160

Query: 217 ERLQSLPKLPCNLYWLDA-QHCTTLESLS 244
             L  LP+   +       Q    L+SL 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLR 189

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (299), Expect = 9e-29
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
              IQ L KL I+  +            +    +         E    S   L  L ++ 
Sbjct: 441 SKAIQRLTKLQIIYFANS-PFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTG----------SAIEELPSPIECLSALCVLDLGD 145
           L +C N+  LP  L  L  L+ + +            +    L    +    + +  +G 
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 146 CKSLKSLKLP--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 203
              L+          +  L  L      +  L    G    L +L L+ N  E IPE   
Sbjct: 558 NN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 204 R-LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL 243
               ++  L  S+  +L+ +P         +A+    + S+
Sbjct: 616 AFTDQVEGLGFSHN-KLKYIPN------IFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 4e-24
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 36/289 (12%)

Query: 20  NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT 76
           N+ I AA      T          K+ I  +     L+  P    +     +  +     
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIEELPSPIEC- 134
            +  L  + G   +L +L L     ++ +P   C     +E +  + + ++ +P+     
Sbjct: 584 KVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 135 -LSALCVLDLGDCKSLKSL------KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLE 186
            +  +  +D    K + S        +      + + + L+   I + P E     S + 
Sbjct: 642 SVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 187 ELYLERNNFERIPE--------SIIRLSKLSSLLVSYCERLQSLP------KLPCNLYWL 232
            + L  N    IPE        +      L+++ + +  +L SL        LP  L  +
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLP-YLSNM 758

Query: 233 DAQHCTTLESL-SGLFSSYKCVFFYLNENFKLDR-KLRGIVEDALQNIQ 279
           D  +     S  +   +S +   F +      +  ++       +    
Sbjct: 759 DVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (253), Expect = 6e-23
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 30/228 (13%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGN---IEKILLDGTAIEELPSSIGC----- 87
                  +++  L  S   KLK +P I +A +   +  +      I     +I C     
Sbjct: 612 EDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 88  -LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--------PIECLSAL 138
                  + L   +  K           +  I L+ + +  +P           +    L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 139 CVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF- 195
             +DL   K L SL        L  L+ + ++    +  P      S L+   +      
Sbjct: 731 TTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 196 ------ERIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQH 236
                  + P  I     L  L +     ++ +  KL   LY LD   
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 5e-19
 Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 29/214 (13%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N   K P   L    + +  + LS    + S+PE               +++    +   
Sbjct: 683 NEIQKFP-TELFATGSPISTIILSNN-LMTSIPE--------------NSLKPKDGNYKN 726

Query: 88  LSRLLELNLGDCKNLKTLPSSL--CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 145
              L  ++L   K L +L        L  L  + ++ +     P+     S L    +  
Sbjct: 727 TYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

Query: 146 CKSLKSLKL------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199
            +  +  ++            SL  L +    I ++ E L     L  L +  N    I 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID 843

Query: 200 ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLD 233
            + +     + + V   ++ Q +    C+   ++
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDI--RGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 33/251 (13%), Positives = 75/251 (29%), Gaps = 38/251 (15%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           + +  ++  L+L+G                +  +         P +IG L+ L  L+ G 
Sbjct: 319 LDNNGRVTGLSLAGF-------------GAKGRV---------PDAIGQLTELKVLSFGT 356

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP-FD 157
             +           +   ++         +      L     L+L D       + P   
Sbjct: 357 H-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415

Query: 158 GLYSLTYLYLTDC-------AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 210
            +   + + L D         IT + +++  L+ L+ +Y   + F     ++      S 
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 211 LLVSYCERLQSLPKLPCNLYWLDAQHCTTLESL-SGLFSSYKCVFFYLNENFKLDRKLRG 269
               Y     S   L  +L  ++  +C  +  L   L+   +     +  N     +   
Sbjct: 476 YAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN-----RGIS 529

Query: 270 IVEDALQNIQL 280
             +      +L
Sbjct: 530 AAQLKADWTRL 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (286), Expect = 4e-27
 Identities = 38/253 (15%), Positives = 80/253 (31%), Gaps = 26/253 (10%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
              + + +S +   K  QI   + NI   T     +  L KL    +        + E  
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNI---TFVSKAVMRLTKLRQFYMGNS---PFVAENI 223

Query: 64  SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS 123
                 +        +        L  L ++ + +C NL  LP+ L  L  ++ I +  +
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 124 AIEELPSP---------IECLSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCAI 172
                                  + ++ +G    LK+  +      +  L  L      +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 173 TELPESLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPKLPCNLYW 231
                + G    L  L L  N    IP +      ++ +L  ++  +L+ +P        
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPN------I 395

Query: 232 LDAQHCTTLESLS 244
            DA+  + + ++ 
Sbjct: 396 FDAKSVSVMSAID 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (254), Expect = 4e-23
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 38/265 (14%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL-----------LDGT 76
           N  T+ P  +      ++  L+ +   KLK +P I  A ++  +            +DG 
Sbjct: 363 NQITEIP-ANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSP---- 131
             + L  +      +  +NL +   +   P  L      L  I L G+ + E+P      
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 132 ----IECLSALCVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITELPESLGLLSSL 185
                +    L  +DL   K L  L        L  L  + L+  + ++ P      S+L
Sbjct: 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 186 EELYLE------RNNFER-IPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQHC 237
           +   +        N   R  PE I     L+ L +     ++ + +    N+  LD +  
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKITPNISVLDIKDN 597

Query: 238 --TTLESLSGLFSSYKCVFFYLNEN 260
              ++  LS +    +   + L  +
Sbjct: 598 PNISI-DLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 32/199 (16%)

Query: 61  EISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGD----CKNLKTLPSSLCKLKSL 115
            ++S G +  + L+G      +P +IG L+ L  L LG            P  +    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 116 EEICL-----TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 170
           E+          + ++  P   E  S L    +      KS+K         T +     
Sbjct: 136 EQKQKMRMHYQKTFVDYDPR--EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 171 AITELPESLGLLSSLEELYLERNNF--------------------ERIPESIIRLSKLSS 210
            IT + +++  L+ L + Y+  + F                    +        L  L+ 
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 211 LLVSYCERLQSLPKLPCNL 229
           + V  C  L  LP     L
Sbjct: 254 VEVYNCPNLTKLPTFLKAL 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 26/218 (11%)

Query: 1   MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP 60
           +   N + L  +      ++ I ++  N  +K P   L    + L  +NL G   L  +P
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLS-NNQISKFP-KELFSTGSPLSSINLMGN-MLTEIP 473

Query: 61  ---------EISSAGNIEKILLDGTAIEELPSSI--GCLSRLLELNLGDCKNLKTLPSSL 109
                       +   +  I L    + +L        L  L+ ++L    +    P+  
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP 532

Query: 110 CKLKSLEEICLTGSAI-------EELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 162
               +L+   +             E P  I    +L  L +G    ++ +        ++
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKV--NEKITPNI 589

Query: 163 TYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP 199
           + L + D     +    +          L  +  + I 
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 93
           N S ++        +  G   L+  P  I+   ++ ++ +    I ++   I     +  
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISV 591

Query: 94  LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS 130
           L++ D  N+    S +C         L     +++  
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (255), Expect = 1e-23
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
            L      L  +      +L+ LPE+ +   +  I  D  ++++LP     L     +  
Sbjct: 167 KLPDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE---SIVA 222

Query: 97  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD---------LGDCK 147
           G+   L+ LP  L  L  L  I    + ++ LP     L AL V D              
Sbjct: 223 GNNI-LEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 148 SLKSLKLPFDGL----YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 203
            L   +  F GL     +L YL  +   I  L +   L  SLEEL +  N    +P    
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALP- 336

Query: 204 RLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 249
              +L  L+ S+   L  +P+LP NL  L  ++   L     +  S
Sbjct: 337 --PRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLREFPDIPES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 3e-23
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
           +L      L  L +S   +L+ LPE+ ++  ++ I +D  ++++LP        L  +  
Sbjct: 125 ALSDLPPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAA 180

Query: 97  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF 156
           G+ + L+ LP  L  L  L  I    +++++LP   +   +L  +  G+   L+ L    
Sbjct: 181 GNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLP---DLPLSLESIVAGNNI-LEELP-EL 233

Query: 157 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 216
             L  LT +Y  +  +  LP+      SLE L +  N    +PE       L+ L VS  
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELP---QSLTFLDVSEN 287

Query: 217 ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 249
                L +LP NLY+L+A     + SL  L  S
Sbjct: 288 -IFSGLSELPPNLYYLNASSN-EIRSLCDLPPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 31/214 (14%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
            L      L  +       L+ LPE+ +   +  I  D   ++ LP     L  L   + 
Sbjct: 209 KLPDLPLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267

Query: 97  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA--------------LCVLD 142
                L  LP     L  L+      S + ELP  +  L+A              L  L+
Sbjct: 268 ----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 202
           + + K L  L         L  L  +   + E+PE      +L++L++E N     P+  
Sbjct: 324 VSNNK-LIEL---PALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIP 376

Query: 203 IRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH 236
             +  L          L  +P+LP NL  L  + 
Sbjct: 377 ESVEDLRMNS-----HLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 29/225 (12%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           +Q+ + L I+++     LK LP+     ++E I      +EELP  +  L  L  +   +
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADN 204

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
              LK LP     L+S+       + +EELP  ++ L  L  +   +   LK+L    D 
Sbjct: 205 NS-LKKLPDLPLSLESIV---AGNNILEELPE-LQNLPFLTTIYADNNL-LKTLP---DL 255

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRL------------- 205
             SL  L + D  +T+LPE    L+ L+      +    +P ++  L             
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 206 -SKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 249
              L  L VS   +L  LP LP  L  L A     L  +  L  +
Sbjct: 316 PPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 34/218 (15%)

Query: 60  PEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 119
           P   S   +++ L   + + E+P     +    E      +  +  P    + + +    
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 120 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL 179
           L      +             L+L +   L SL    +    L  L  +  ++TELPE  
Sbjct: 65  LRDCLDRQAHE----------LELNNLG-LSSLP---ELPPHLESLVASCNSLTELPELP 110

Query: 180 G-----------------LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
                             L   LE L +  N  E++PE +   S L  + V     L+ L
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKL 168

Query: 223 PKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 260
           P LP +L ++ A +   LE L  L +       Y + N
Sbjct: 169 PDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
           P L Q L  L +      S L  LP      N+  +      I  L         L ELN
Sbjct: 273 PELPQSLTFLDVSENIF-SGLSELP-----PNLYYLNASSNEIRSLCDL---PPSLEELN 323

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD---------LGDC 146
           + + K L  LP+   +L+ L     + + + E+P   + L  L V               
Sbjct: 324 VSNNK-LIELPALPPRLERLI---ASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379

Query: 147 KSLK---SLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 203
           + L+    L    +   +L  L++    + E P+      S+E+L +         E   
Sbjct: 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAH 436

Query: 204 RLSKLSSLLVS 214
             +      V 
Sbjct: 437 ETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
           SL      L  LN+S   KL  LP  +    +E+++     + E+P     L    +L++
Sbjct: 311 SLCDLPPSLEELNVSNN-KLIELP--ALPPRLERLIASFNHLAEVPELPQNLK---QLHV 364

Query: 97  GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF 156
                L+  P     ++ L         + E+P   E    L  L +     L+      
Sbjct: 365 EYNP-LREFPDIPESVEDLRMNSH----LAEVP---ELPQNLKQLHVETNP-LREFP--- 412

Query: 157 DGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNN 194
           D   S+  L +    + +  E +      LE+   E ++
Sbjct: 413 DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 7e-23
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 13/212 (6%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
              L + +   L     +  +       +I K+++ G  +  +   I  L+ L  LNL  
Sbjct: 18  DADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNG 75

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
            + +  +   L  L  L  + +  + I ++   ++ L+ L  L L +   +  +  P   
Sbjct: 76  NQ-ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDIS-PLAN 130

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC-- 216
           L  +  L L           L  ++ L  L +  +  + +   I  L+ L SL ++Y   
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189

Query: 217 ERLQSLPKLPCNLYWLDAQHC--TTLESLSGL 246
           E +  L  L  +L++  A     T +  ++ +
Sbjct: 190 EDISPLASLT-SLHYFTAYVNQITDITPVANM 220

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 5e-21
 Identities = 39/202 (19%), Positives = 85/202 (42%), Gaps = 27/202 (13%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           + S + ++  L  L ++   K+K +  I++  ++  + L+   IE++ S +  L+ L   
Sbjct: 147 DLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYF 204

Query: 95  NLGD-----------CKNLKTL---------PSSLCKLKSLEEICLTGSAIEELPSPIEC 134
                             L +L          S L  L  L  + +  + I ++   ++ 
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKD 263

Query: 135 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERN 193
           L+ L +L++G  + +  +    + L  L  L+L +  +     E +G L++L  L+L +N
Sbjct: 264 LTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 194 NFERIPESIIRLSKLSSLLVSY 215
           +   I   +  LSK+ S   + 
Sbjct: 322 HITDIRP-LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           + ++ +L  L +    K+  L  +++   +  + +    I ++ + +  L++L  LN+G 
Sbjct: 217 VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGS 274

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD 157
            + +  + S L  L  L  + L  + +       I  L+ L  L L     +  ++ P  
Sbjct: 275 NQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIR-PLA 330

Query: 158 GLYSLTYLYLTDCAITE 174
            L  +      +  I +
Sbjct: 331 SLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)

Query: 149 LKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 199
             +L           P   L       L   ++T++  +   L S+ +L +       I 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ 60

Query: 200 ESIIRLSKLSSLLVSYCE--RLQSLPKLPCNLYWLDAQHC--TTLESLSGL 246
             I  L+ L  L ++  +   +  L  L   L  L       T + +L  L
Sbjct: 61  G-IEYLTNLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNL 109

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 3e-22
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 22/191 (11%)

Query: 42  LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 101
           +N+   L L+    L SLP+ +    I  + +   A+  LP     L     L+  D + 
Sbjct: 58  INQFSELQLNRL-NLSSLPD-NLPPQITVLEITQNALISLPELPASLEY---LDACDNR- 111

Query: 102 LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 161
           L TLP     LK L+   +  + +  LP   E  + L  ++  + + L    LP +   S
Sbjct: 112 LSTLPELPASLKHLD---VDNNQLTMLP---ELPALLEYINADNNQ-LTM--LP-ELPTS 161

Query: 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS-YCE--R 218
           L  L + +  +T LPE   L  SLE L +  N  E +P   +R        +   C   R
Sbjct: 162 LEVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 219 LQSLPKLPCNL 229
           +  +P+   +L
Sbjct: 219 ITHIPENILSL 229

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 1e-18
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 21/208 (10%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
           P L   L  L   +     +L +LPE     +++ + +D   +  LP     L     +N
Sbjct: 96  PELPASLEYLDACDN----RLSTLPE--LPASLKHLDVDNNQLTMLPELPALLE---YIN 146

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
             + + L  LP     L+ L    +  + +  LP   E   +L  LD+     L+SL   
Sbjct: 147 ADNNQ-LTMLPELPTSLEVLS---VRNNQLTFLP---ELPESLEALDVSTNL-LESLPAV 198

Query: 156 FDGLYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
               +       +    +  IT +PE++  L     + LE N         +        
Sbjct: 199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 212 LVSYCERLQSLPKLPCNLYWLDAQHCTT 239
                            L+   A   T 
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 10/147 (6%)

Query: 104 TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG-LYSL 162
           ++   +    SL +     +                   L      +++ L  +  +   
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 163 TYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
           + L L    ++ LP++L     +  L + +N    +PE     + L  L      RL +L
Sbjct: 62  SELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELP---ASLEYLDACDN-RLSTL 115

Query: 223 PKLPCNLYWLDAQHC--TTL-ESLSGL 246
           P+LP +L  LD  +   T L E  + L
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALL 142

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.4 bits (146), Expect = 7e-10
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE-- 93
           P L   L  L   ++    +L  LPE     ++E + +    +E LP+         E  
Sbjct: 156 PELPTSLEVL---SVRNN-QLTFLPE--LPESLEALDVSTNLLESLPAVPVRNHHSEETE 209

Query: 94  --LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKS 151
                 + + +  +P ++  L     I L  + +                  G       
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 152 LKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
                +      +  L D      PE     +   ++    + FE    +    + L  L
Sbjct: 269 SDGQQN----TLHRPLADAVTAWFPE-----NKQSDVSQIWHAFEHEEHANTFSAFLDRL 319

Query: 212 LVSY 215
             + 
Sbjct: 320 SDTV 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 4e-22
 Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 24/199 (12%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
           P+L   L KL   N     +L SLP       ++++ +    +  LP+    L +L   N
Sbjct: 157 PALPSELCKLWAYNN----QLTSLPM--LPSGLQELSVSDNQLASLPTLPSELYKLWAYN 210

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
                 L +LP+    LK L    ++G+ +  LP      S L  L +   + L SL  P
Sbjct: 211 N----RLTSLPALPSGLKELI---VSGNRLTSLP---VLPSELKELMVSGNR-LTSL--P 257

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR----LSKLSSL 211
                 L  L +    +T LPESL  LSS   + LE N         +R        S  
Sbjct: 258 -MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 212 LVSYCERLQSLPKLPCNLY 230
           ++ +     S P+    L+
Sbjct: 317 IIRFDMAGASAPRETRALH 335

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 46/208 (22%)

Query: 42  LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKN 101
            N   +LN+     L +LP+     +I  +++    +  LP+       L  L +   + 
Sbjct: 39  NNGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQ- 92

Query: 102 LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS 161
           L +LP     L  L       + +  LPS                               
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPS------------------------------G 122

Query: 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS 221
           L  L++    +T LP        L+EL +  N    +P      S+L  L      +L S
Sbjct: 123 LCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTS 175

Query: 222 LPKLPCNLYWLDAQHC--TTL-ESLSGL 246
           LP LP  L  L        +L    S L
Sbjct: 176 LPMLPSGLQELSVSDNQLASLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 8e-15
 Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 110 CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 169
           C       + +  S +  LP  +   + +  L + D  +L SL  P      L  L ++ 
Sbjct: 37  CLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-NLTSL--P-ALPPELRTLEVSG 90

Query: 170 CAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 229
             +T LP     L  L        +   +P        L  L +    +L SLP LP  L
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGN-QLTSLPVLPPGL 143

Query: 230 YWLDAQHCTTLESLSGLFSS 249
             L       L SL  L S 
Sbjct: 144 QELSVSDN-QLASLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 10/159 (6%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
           P+L   L +L++       +L SLP       ++++++ G  +  LP        LL L+
Sbjct: 217 PALPSGLKELIVSGN----RLTSLPV--LPSELKELMVSGNRLTSLPMLPS---GLLSLS 267

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
           +   + L  LP SL  L S   + L G+ + E                G           
Sbjct: 268 VYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 194
                   +L   D  +                  E N 
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           +   +++LN L  +N S   +L  +  + +   +  IL++   I ++   +  L+ L  L
Sbjct: 60  SIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
            L + + +  +   L  L +L  + L+ + I ++   +  L++L  L  G+  +      
Sbjct: 118 TLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLK--- 171

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 214
           P   L +L  L ++   ++++   L  L++LE L    N    I   +  L+ L  L ++
Sbjct: 172 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLN 229

Query: 215 YC--ERLQSLPKLPCNLYWLDAQHC--TTLESLSGL 246
               + + +L  L  NL  LD  +   + L  LSGL
Sbjct: 230 GNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGL 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           +   +  L  L  L+L+   ++ +L  +S    + ++ L    I  +   +  L+ L  L
Sbjct: 235 DIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNL 292

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL----------- 143
            L + + L+ +   +  LK+L  + L  + I ++ SP+  L+ L  L             
Sbjct: 293 ELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSL 349

Query: 144 GDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 194
            +  ++  L           P   L  +T L L D A T  P +     S+         
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 195 FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFS 248
               P +I      +   +++        ++             T+   +  FS
Sbjct: 410 ALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFSQP-----VTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.2 bits (196), Expect = 5e-16
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 71  ILLDGTAIEELPSSIGCLSRLLELNLG-----------DCKNLKTL---------PSSLC 110
            +   T I ++  +   L+  ++  LG           D   + TL            + 
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE 65

Query: 111 KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 170
            L +L +I  + + + ++  P++ L+ L  + + + + +  +  P   L +LT L L + 
Sbjct: 66  YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNN 122

Query: 171 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC-ERLQSLPKLPCNL 229
            IT++   L  L++L  L L  N    I  ++  L+ L  L        L+ L  L   L
Sbjct: 123 QITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLT-TL 179

Query: 230 YWLDAQHC--TTLESLSGL 246
             LD      + +  L+ L
Sbjct: 180 ERLDISSNKVSDISVLAKL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 3e-21
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 36/242 (14%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
            + +    KL +LNLS    L    ++ S   +  + L+   ++EL         +  L+
Sbjct: 51  AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLH 105

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDL----------- 143
             +  N+  +  S    +  + I L  + I  L      C S +  LDL           
Sbjct: 106 AANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 144 ---GDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 191
                  +L+ L L                L  L L+   +  +       + +  + L 
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 192 RNNFERIPESIIRLSKLSSLLVSY----CERLQSLPKLPCNLYWLDAQHCTTLESLSGLF 247
            N    I +++     L    +      C  L+        +  +  Q    L   +   
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 248 SS 249
            +
Sbjct: 283 CT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 19/209 (9%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLL 92
             + Q+ N+  I  ++    LK        SA N++++ L G  + ++  + +   ++L 
Sbjct: 3   HEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 93  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL 152
            LNL     L      L  L +L  + L  + ++EL        ++  L   +   +   
Sbjct: 62  LLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISR- 113

Query: 153 KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP--ESIIRLSKLS 209
            +          +YL +  IT L +   G  S ++ L L+ N  + +   E       L 
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 210 SLLVSYCERLQSLPKLPC--NLYWLDAQH 236
            L + Y   +  +        L  LD   
Sbjct: 173 HLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 17/175 (9%), Positives = 53/175 (30%), Gaps = 8/175 (4%)

Query: 42  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELP--SSIGCLSRLLELNLG 97
                 + L+   K+  L ++       ++ + L    I+ +           L  LNL 
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 98  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 157
               +  +   +     L+ + L+ + +  +    +  + +  + L + K L  ++    
Sbjct: 178 YNF-IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234

Query: 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 212
              +L +  L                +     + +   +++         + +L 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECL 135
           AI E+  +    +R     + D    + L S      +++E+ L+G+ + ++ +  +   
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 136 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 195
           + L +L+L     L       + L +L  L L +  + EL        S+E L+   NN 
Sbjct: 58  TKLELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111

Query: 196 ERIPESIIRLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 236
            R+  S        ++ ++   ++  L           + +LD + 
Sbjct: 112 SRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRS-RVQYLDLKL 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 19/235 (8%)

Query: 32  KTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD--GTAIEELPSSIGC 87
            +          KL +L+      +  L +  +SS      + L+  G  I  +      
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 88  LSRLLELNLGDCKNLKTLPSSL--CKLKSLEEICLTGSAIEELPSPIE---CLSALCVLD 142
            +    LN G  +NL  +   L    ++SL          E++   +    C  ++  ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 202
           L            F     L  L LT   ++ELP  L  LS+L++L L  N FE + +  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 203 IR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC--TTLESLSGLFSS 249
                 L+ L +    +   L       L  NL  LD  H    T +  +    +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 25/250 (10%)

Query: 18  KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG 75
            L ++ ++  +I T       +++L+ L  LNLS   +  SL          +E + L  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAF 409

Query: 76  TAIEEL--PSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG----SAIEEL 128
           T ++     S    L  L  LNL     L          L +L+ + L G        + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 129 PSPIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEE 187
            + ++ L  L +L L  C  L S+ +  F  L  + ++ L+   +T              
Sbjct: 469 TNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 188 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH---------- 236
           L L  N+   I  S++  LS+  ++ +     L         L W               
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQN-PLDCTCSNIYFLEWYKENMQKLEDTEDTL 586

Query: 237 CTTLESLSGL 246
           C     L G+
Sbjct: 587 CENPPLLRGV 596

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 42/263 (15%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N+     N +    L  L  L+L+ C ++  +                        +   
Sbjct: 43  NVLPTIQNTTF-SRLINLTFLDLTRC-QIYWIH---------------------EDTFQS 79

Query: 88  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 146
             RL  L L     +    ++L   K+L+ +    + I  +   P+     L  L LG  
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 147 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYL--ERNNFERIPESI 202
             + S+KLP       L  L   + AI  L  E +  L     L L    N+   I    
Sbjct: 140 H-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 203 IRLSKLSSLLVSYCERLQSLPKLPCN-----LYWLDAQHCTTLESLSGLFSSYKC---VF 254
              +   SL     + L  + K   N     L+    +     +    +F          
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 255 FYLNENFKLDRKLRGIVEDALQN 277
             L ++         I  +    
Sbjct: 259 INLQKH-----YFFNISSNTFHC 276

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 29/209 (13%)

Query: 87  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 145
                   N  +   L  +P +L    S E +  + + +  +  +    L  L  LDL  
Sbjct: 10  EKEVNKTYNCENL-GLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66

Query: 146 CKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPESIIR 204
           C+     +  F   + L  L LT   +  +   +L    +L+ L+  +     I    + 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 205 -LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC-------TTLESLSGLFSSYK 251
               L SL +     + S+           L  LD Q+          + SL        
Sbjct: 127 NQKTLESLYLGSN-HISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQA----T 180

Query: 252 CVFFYLNENFKLDRKLRGIVEDALQNIQL 280
            +   LN N      + GI   A  +   
Sbjct: 181 NLSLNLNGND-----IAGIEPGAFDSAVF 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 6e-20
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 14/200 (7%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
            + +    KL +LNLS    L    ++ S   +  + L+   ++EL         +  L+
Sbjct: 51  AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLH 105

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL 154
             +  N+  +  S    +  + I L  + I  L      C S +  LDL   + + ++  
Sbjct: 106 AANN-NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF 161

Query: 155 P--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 212
                   +L +L L    I ++   + + + L+ L L  N    +       + ++ + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 213 VSYCERLQSLPKLPCNLYWL 232
           +    +L  + K       L
Sbjct: 221 LRNN-KLVLIEKALRFSQNL 239

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 31/277 (11%), Positives = 81/277 (29%), Gaps = 13/277 (4%)

Query: 42  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSS--IGCLSRLLELNLG 97
                 + L+   K+  L ++       ++ + L    I+ +  +        L  LNL 
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 98  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 157
               +  +   +     L+ + L+ + +  +    +  + +  + L + K L  ++    
Sbjct: 178 YNF-IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR 234

Query: 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 217
              +L +  L                +     + +   +++         + +L      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 218 RLQSLPK-LPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDR---KLRGIVED 273
             + LP      L  L  +    L          +C         ++D    + R +++ 
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 274 ALQNIQLMATARWKEIR-EKISYPALQGHVVLPGNEI 309
                Q   T   K+   ++      + H  L G   
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 19/166 (11%)

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECL 135
           AI E+  +    +R     + D    + L S      +++E+ L+G+ + ++  + +   
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 136 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 195
           + L +L+L     L    L  + L +L  L L +  + EL        S+E L+   NN 
Sbjct: 58  TKLELLNLSSNV-LYET-LDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111

Query: 196 ERIPESIIRLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 236
            R+  S        ++ ++   ++  L           + +LD + 
Sbjct: 112 SRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRS-RVQYLDLKL 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 41  HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 100
            +N L  + L+    +  L  I  A NI+ + ++        + I  LS L  L +    
Sbjct: 42  QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 101 NLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159
                  +L  L SL  + ++ SA ++   + I  L  +  +DL    ++  +  P   L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL 158

Query: 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 194
             L  L +    + +    +     L +LY     
Sbjct: 159 PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 11/196 (5%)

Query: 17  GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT 76
           G   Q  + A       P+ +   +LN   +L  S  + +      +   ++  I L   
Sbjct: 1   GAAEQTGLKASQDNVNIPDSTFKAYLNG--LLGQSSTANI----TEAQMNSLTYITLANI 54

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI-EELPSPIECL 135
            + +L + I     + +L + +        + +  L +LE + + G  +  +    +  L
Sbjct: 55  NVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 136 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 195
           ++L +LD+       S+    + L  +  + L+          L  L  L+ L ++ +  
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 196 ERIPESIIRLSKLSSL 211
                 I    KL+ L
Sbjct: 172 HDY-RGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 67  NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE 126
                LL  ++   +  +   ++ L  + L +  N+  L + +    +++++ +      
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHAT 79

Query: 127 ELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-PESLGLLSS 184
              +PI  LS L  L +     + S K+    GL SLT L ++  A  +     +  L  
Sbjct: 80  NY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 185 LEELYLERNNFERIPESIIRLSKLSSLLVSYCE--RLQSLPKLPCNLYWLDAQH 236
           +  + L  N        +  L +L SL + +      + +   P  L  L A  
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI-EELPSSIGCLSRLLELNLG 97
           I++ + +  L ++      +   IS   N+E++ + G  +  +   ++  L+ L  L++ 
Sbjct: 62  IEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 98  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 157
              +  ++ + +  L  +  I L+ +       P++ L  L  L++     +   +   +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIE 178

Query: 158 GLYSLTYLYLTDCAITEL 175
               L  LY     I   
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 7e-19
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG---TAIEELP 82
           N   +       + L  +  + LS   K   L     +   ++++++L       ++  P
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 83  SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141
           S    L  L  L+L +  N+  +    L  L+ LE + L  + +  L           + 
Sbjct: 474 SPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWK--HANPGGPIY 530

Query: 142 DLGDCKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY 189
            L     L  L L            F  L+ L  + L    +  LP S      SL+ L 
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 190 LERNNFERIPESIIR--LSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLF 247
           L++N    + + +       L+ L + +     +   +   + W++  H      +  L 
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN----IPELS 646

Query: 248 SSYKCVF 254
           S Y C  
Sbjct: 647 SHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 5/172 (2%)

Query: 45  LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLK 103
             + + S   KL  +P+     NI  + L    +  L  ++    S+L  L++G     K
Sbjct: 6   HEVADCSHL-KLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 104 TLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSL 162
             P    KL  L+ + L  + + +L        + L  L L      K    PF    +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 163 TYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213
             L L+   ++     +   L +L+EL L  N  + +    + +   SSL  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 60/276 (21%), Positives = 109/276 (39%), Gaps = 31/276 (11%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PS 83
            N  +K   P L Q L  L +LNL    +L  L +   +   N+ ++ L   +I+++  +
Sbjct: 58  FNTISKLE-PELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 84  SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP---IECLSALCV 140
                  L+ L+L       T   +  +L++L+E+ L+ + I+ L S    I   S+L  
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 141 LDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITE-LPESLGL---LSSLEELYLERNNF 195
           L+L   + +K      F  +  L  L+L +  +   L E L L    +S+  L L  +  
Sbjct: 176 LELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 196 ERIPESII---RLSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC--TTLESLSG 245
                +     + + L+ L +SY   L  +       LP  L +   ++     L S S 
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHS- 291

Query: 246 LFSSYKCVFFYLNENFKL----DRKLRGIVEDALQN 277
           L   +   +  L  +F         L  I + + Q 
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 52/252 (20%)

Query: 35  NPSLIQHLNKLVILNLSGC----------SKLKSLPEISSAGNIEKILLDGTAIEEL-PS 83
                  L +L    L               L ++  ++   +  K  +   ++ ++   
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 84  SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALC---- 139
           S   L  L  LN+ D        +    L +L+ + L+ S         E   +L     
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 140 -VLDLGDCK-------------SLKSLKL------------PFDGLYSLTYLYLTDCAIT 173
            +L+L   K              L+ L L             + GL ++  +YL+     
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 174 EL-PESLGLLSSLEELYLERNNFERI---PESIIRLSKLSSLLVSYCERLQSLP-----K 224
           +L   S  L+ SL+ L L R   + +   P     L  L+ L +S    + ++       
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEG 502

Query: 225 LPCNLYWLDAQH 236
           L   L  LD QH
Sbjct: 503 LE-KLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 7e-13
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 32/213 (15%)

Query: 18  KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA 77
            L +++++   I         I   + L  L LS   ++K                    
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFS----------------- 187

Query: 78  IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC---KLKSLEEICLTGSAIEELPSPI-- 132
               P     + RL  L L + +   +L   LC      S+  + L+ S +    +    
Sbjct: 188 ----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 133 -ECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELY 189
               + L +LDL     L  +    F  L  L Y +L    I  L   SL  L ++  L 
Sbjct: 244 GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 190 LERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
           L + +F +   S+  L K+      + + L+ L
Sbjct: 303 L-KRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 133 ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLE 191
           +C  +  V D    K L  +  P D   ++T L LT   +  L   +    S L  L + 
Sbjct: 1   KCTVSHEVADCSHLK-LTQV--PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 192 RNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 223
            N   ++   + + L  L  L + +   L  L 
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLS 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 8e-19
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)

Query: 40  QHLNKLVILNLSGCS-KLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLSRLLELNL 96
             L  L  L+LS      K     S  G  +++ + L    +  + S+   L +L  L+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 97  GDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLK 153
                LK +   S    L++L  + ++ +      + I   LS+L VL +      +   
Sbjct: 404 QHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENF 461

Query: 154 LP--FDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESII-RLSKLS 209
           LP  F  L +LT+L L+ C + +L  +    LSSL+ L +  N  + +P+ I  RL+ L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 210 SLLVS 214
            + + 
Sbjct: 522 KIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 11/198 (5%)

Query: 18  KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-EISSAGNIEKILLDGT 76
            L  + ++   +  K            L  L+LS    + ++         +E +    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS 406

Query: 77  AIEELP--SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSP-- 131
            ++++   S    L  L+ L++    + +   +     L SLE + + G++ +E   P  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 132 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY 189
              L  L  LDL  C+ L+ L    F+ L SL  L +    +  +P+     L+SL++++
Sbjct: 466 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 190 LERNNFERIPESIIRLSK 207
           L  N ++     I  LS+
Sbjct: 525 LHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 21/214 (9%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSS 108
           C       +P+ +    + + + L    +  L S S      L  L+L  C  ++T+   
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDG 70

Query: 109 LC-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYL 165
               L  L  + LTG+ I+ L       LS+L  L   +   L SL   P   L +L  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129

Query: 166 YLTDCAITEL--PESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVS---YCERL 219
            +    I     PE    L++LE L L  N  + I  + +R L ++  L +S       +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 220 QSLPKLP---CNLYWLDAQHCT-TLESLSGLFSS 249
             +         L+ L  ++   +L  +      
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 51/282 (18%), Positives = 97/282 (34%), Gaps = 54/282 (19%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N      + S      +L +L+LS C +++++                        +   
Sbjct: 38  NPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIE---------------------DGAYQS 74

Query: 88  LSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGD 145
           LS L  L L     +++L   +   L SL+++    + +  L + PI  L  L  L++  
Sbjct: 75  LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 146 CKSLKSLKLP--FDGLYSLTYLYLTDCAITELP-ESLGLLSSLE----ELYLERNNFERI 198
              ++S KLP  F  L +L +L L+   I  +    L +L  +      L L  N    I
Sbjct: 134 NL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 199 PESIIRLSKLSSLLVSYCERLQSLPKLPC--------------------NLYWLDAQHCT 238
                +  +L  L +       ++ K                       NL   D     
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 239 TLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQL 280
            L +L+        + +YL++   L   L  +   +L ++ +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 44/243 (18%), Positives = 76/243 (31%), Gaps = 23/243 (9%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKSLPEI 62
           + +E     +        +     +      N ++ +  L  L             L   
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-- 282

Query: 63  SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 122
               N+    L    IE +            L L +C      P+   KLKSL+ +  T 
Sbjct: 283 ----NVSSFSLVSVTIERVKDFSYNFG-WQHLELVNC-KFGQFPT--LKLKSLKRLTFTS 334

Query: 123 SAIEELPSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDCAITELPESLG 180
           +      S ++ L +L  LDL                G  SL YL L+   +  +  +  
Sbjct: 335 NKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 181 LLSSLEELYLERNNFERIPESII--RLSKLSSLLVSYCERLQSLP-----KLPCNLYWLD 233
            L  LE L  + +N +++ E  +   L  L  L +S+    +         L  +L  L 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLS-SLEVLK 451

Query: 234 AQH 236
              
Sbjct: 452 MAG 454

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII 203
            C  L   K+P +  +S   L L+   +  L   S      L+ L L R   + I +   
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 204 R-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHC 237
           + LS LS+L+++    +QSL       L  +L  L A   
Sbjct: 73  QSLSHLSTLILTGN-PIQSLALGAFSGLS-SLQKLVAVET 110

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 9e-19
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           +  L KL  LN     KL  L  +S    +  +      + E+   +   ++L EL+   
Sbjct: 102 VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
            K +  L   +     L  +  + + I EL   +     L  L+      +  L    + 
Sbjct: 158 NKKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKL--DLNQ 210

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 218
              LT+L  +   +TE+   +  L+ L       N    +  S   LSKL++L     + 
Sbjct: 211 NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTD- 265

Query: 219 LQSLPKLPC-NLYWLDAQHCTTLESLS 244
           L  +       L +  A+ C  ++ L 
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELD 292

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 19  LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAI 78
               + AA  +          + L  L  L+      +  +  I     + K++     I
Sbjct: 20  FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNI 76

Query: 79  EELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP----IEC 134
             L   +   + L  L     K L  L   +  L  L  +    + + +L       +  
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 135 LSA----LCVLDLGDCKSLKSL---------KLPFDGLYSLTYLYLTDCAITELPESLGL 181
           L+     L  +D+     L  L         KL       LT L  +   ITEL   +  
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQ 189

Query: 182 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQH 236
              L  L  + NN  ++  +  +  +L+ L  S   +L  +   P   L + D   
Sbjct: 190 NKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           +  L +L   + S    L  L  +S+   +  +    T + E+  +    ++L+      
Sbjct: 229 VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAEG 284

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
           C+ +K L   +     L  +    + I EL   +     L  L L + + L  L      
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTE-LTEL--DVSH 337

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLL 212
              L  L   +  I +    +G + +L   +        +P+  +  + L+  +
Sbjct: 338 NTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 67  NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI 125
           N    +     ++   + S   L+ L  L+  +  ++  +   + KL  L ++  T + I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTG-IEKLTGLTKLICTSNNI 76

Query: 126 EELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSL 185
             L   +   + L  L     K L +L      L  LTYL      +T+L  S      L
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNL--DVTPLTKLTYLNCDTNKLTKLDVS--QNPLL 129

Query: 186 EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLDAQH 236
             L   RN    I  S    ++L+ L     +++  L   P   L  LD   
Sbjct: 130 TYLNCARNTLTEIDVS--HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 9e-19
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 33/212 (15%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE-ELPS--SIGCLSRLL 92
            S +  L  L  L LS      S+     + ++  + L   ++   + +  S+G  S L 
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 93  ELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIE-ELPSPIEC---LSALCVLDLGDCK 147
            LN+           S   KL SLE + L+ ++I                L  L +   K
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 148 --------SLKSLK------------LP-FDGLYSLTYLYLTDCAIT-ELPESLGLLSSL 185
                      +L+            +P      +L +L ++   ++ +   ++   + L
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 186 EELYLERNNFE-RIPESIIRLSKLSSLLVSYC 216
           + L +  N F   IP     L  L  L ++  
Sbjct: 250 KLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 52/271 (19%), Positives = 87/271 (32%), Gaps = 64/271 (23%)

Query: 34  PNPSLIQHLNKLVILNLSGC--SKLKSLPEISSAGNIEKILLDGTAIE-ELPSSI---GC 87
              + +   + L  LN+S         +       ++E + L   +I             
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 88  LSRLLELNL-----------GDCKNLKTL----------PSSLCKLKSLEEICLTGSAIE 126
              L  L +             C NL+ L             L    +L+ + ++G+ + 
Sbjct: 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236

Query: 127 -ELPSPIECLSALCVLDLGD-----------CKSLKSLKL---PFDG---------LYSL 162
            +    I   + L +L++              KSL+ L L    F G           +L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 163 TYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPESII-RLSKLSSLLVSYCERL 219
           T L L+       +P   G  S LE L L  NNF   +P   + ++  L  L +S+    
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EF 355

Query: 220 Q-----SLPKLPCNLYWLDAQHCTTLESLSG 245
                 SL  L  +L  LD        + SG
Sbjct: 356 SGELPESLTNLSASLLTLDLSSN----NFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 43/217 (19%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPSSIG-CLSRL 91
           P      + L  L LS  +    LP   +     ++ + L       ELP S+    + L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 92  LELNLGDCKNLK-TLPSSLCK--LKSLEEI-----CLTGSAIEELPSPIECLSALCVLDL 143
           L L+L    N    +  +LC+    +L+E+       TG    ++P  +   S L  L L
Sbjct: 371 LTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHL 425

Query: 144 -------------GDCKSLKSLKLP---FDG--------LYSLTYLYLTDCAIT-ELPES 178
                        G    L+ LKL     +G        + +L  L L    +T E+P  
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 179 LGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVS 214
           L   ++L  + L  N     IP+ I RL  L+ L +S
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 49/221 (22%)

Query: 80  ELPSSIGCLSRLLELNL------------GDCKNLKTL-------------PSSLCKLKS 114
            + SS+  L+ L  L L                +L +L              +SL     
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 115 LEEICLTGSAIE-ELPSPIEC-LSALCVLDLGDCK---SLKSLKLPFDGLYSLTYLYLTD 169
           L+ + ++ + ++          L++L VLDL       +     +  DG   L +L ++ 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 170 CAIT-ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQ-----SL 222
             I+ ++   +    +LE L +  NNF   IP  +   S L  L +S   +L      ++
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN-KLSGDFSRAI 243

Query: 223 PKLPCNLYWLDAQHCTTLESLSGLFSSYKC---VFFYLNEN 260
                 L  L+           G           +  L EN
Sbjct: 244 STCT-ELKLLNISSN----QFVGPIPPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 36  PSLIQHLNKLVILNLSGCS----------KLKSLPEISSAGNIEKILLDGTAIEELPSSI 85
           P  I  L  L IL LS  S            +SL  +    N    L +GT    +P+++
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN----LFNGT----IPAAM 558

Query: 86  GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLD 142
              S  +  N             +      +E    G+ +E        +  LS     +
Sbjct: 559 FKQSGKIAANFIA----GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFE-RIPE 200
           +            FD   S+ +L ++   ++  +P+ +G +  L  L L  N+    IP+
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674

Query: 201 SIIRLSKLSSLLVSY 215
            +  L  L+ L +S 
Sbjct: 675 EVGDLRGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 47/205 (22%)

Query: 36  PSLIQHLNKLVIL-----NLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR 90
           P+ +     L+ L       +G     ++P  ++       +       +    I     
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNG-----TIP--AAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 91  LLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDL---- 143
             E +               L +L +     +T            +   ++  LD+    
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 144 ---------GDCKSLKSLKL---PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 191
                    G    L  L L      G                +P+ +G L  L  L L 
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISG---------------SIPDEVGDLRGLNILDLS 688

Query: 192 RNNFE-RIPESIIRLSKLSSLLVSY 215
            N  + RIP+++  L+ L+ + +S 
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 85  IGC-LSRLLELNLGDC---KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 140
           + C   ++  ++L           + SSL  L  LE + L+ S I    S  +C ++L  
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 141 LDLGDCKSLKSLKLPFDG----LYSLTYLYLTDCAIT-ELPESLGL-LSSLEELYLERNN 194
           LDL    SL S  +           L +L ++   +      S GL L+SLE L L  N+
Sbjct: 105 LDLSRN-SL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 195 FE-RIPESIIRLSKLSSL 211
                    +       L
Sbjct: 163 ISGANVVGWVLSDGCGEL 180

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 15/145 (10%)

Query: 8   QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-EISSAG 66
           +    +++ G   +   A   +  +      +  L+     N++             + G
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 67  NIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKT--LPSSLCKLKSLEEI----- 118
           ++  + +    +   +P  IG +  L  LNLG   N  +  +P  +  L+ L  +     
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG--HNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 119 CLTGSAIEELPSPIECLSALCVLDL 143
            L G     +P  +  L+ L  +DL
Sbjct: 691 KLDG----RIPQAMSALTMLTEIDL 711

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 20/229 (8%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEI--SSAGNIEKILLDGTAIEELPSSI-GCLSRL 91
              +   L+ L  L++S   K+  L +       N++ + +    +  +       L+ L
Sbjct: 96  PLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154

Query: 92  LELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSL 149
            +L L  C NL ++P+ +L  L  L  + L    I  +     + L  L VL++     L
Sbjct: 155 EQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 150 KSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSK 207
            ++        +LT L +T C +T +P  ++  L  L  L L  N    I  S++  L +
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 208 LSSLLVSYCERLQSLPK-----LPCNLYWLDAQHC--TTLESLSGLFSS 249
           L  + +    +L  +       L   L  L+      TTLE    +F S
Sbjct: 274 LQEIQLVGG-QLAVVEPYAFRGLN-YLRVLNVSGNQLTTLE--ESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 30/190 (15%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRL 91
           +      LN L  L L  C  L S+P   +S    +  + L    I  +       L RL
Sbjct: 144 SHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 92  LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLG------ 144
             L +     L T+  +     +L  + +T   +  +P   +  L  L  L+L       
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 145 -------DCKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPESL-GLLSSL 185
                  +   L+ ++L            F GL  L  L ++   +T L ES+   + +L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 186 EELYLERNNF 195
           E L L+ N  
Sbjct: 323 ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 87  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 145
           C ++   +     K    +P  +        + L  + I+ L          L  L+L +
Sbjct: 9   CSAQDRAVLCHR-KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 146 CKSLKSLKL-PFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPESII 203
              + +++   F+ L++L  L L    +  +P      LS+L +L +  N    + + + 
Sbjct: 66  NI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 204 R-LSKLSSLLVSYCERLQSLP 223
           + L  L SL V     L  + 
Sbjct: 125 QDLYNLKSLEVGDN-DLVYIS 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 36  PSLIQHLNKLVILNLSGCS-KLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLSRLL 92
             +   L +L  L+LS      K     S  G  +++ + L    +  + S+   L +L 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 93  ELNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSL 149
            L+     NLK +        L++L  + ++ +      + I   LS+L VL +      
Sbjct: 105 HLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 150 KSLK-LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LS 206
           ++     F  L +LT+L L+ C + +L   +   LSSL+ L +  NNF  +     + L+
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 207 KLSSLLVSYCERLQSLPK-----LPCNLYWLDAQH 236
            L  L  S    + +  K      P +L +L+   
Sbjct: 224 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL 154
            C  K L ++P+ +    S   + L  + ++ LP  + + L+ L  L L     L     
Sbjct: 13  RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGC 69

Query: 155 P---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII--RLSKLS 209
                 G  SL YL L+   +  +  +   L  LE L  + +N +++ E  +   L  L 
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 210 SLLVSYCERLQSLPK-----LPCNLYWLDAQHCTTLESL-SGLFSS 249
            L +S+    +         L  +L  L     +  E+    +F+ 
Sbjct: 130 YLDISHT-HTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTE 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 48/164 (29%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
              +   L+ L +L ++G S  ++                       P     L  L  L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFL---------------------PDIFTELRNLTFL 180

Query: 95  NLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK 153
           +L  C+ L+ L   +   L SL+ + ++ +    L +                       
Sbjct: 181 DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----------------------- 216

Query: 154 LPFDGLYSLTYLYLTDCAITELPESL--GLLSSLEELYLERNNF 195
            P+  L SL  L  +   I    +       SSL  L L +N+F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 3e-18
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           IQ+L  +  L L+G  KL  +  +++  N+  + LD   I++L SS+  L +L  L+L  
Sbjct: 61  IQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEH 118

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
              +  + + L  L  LE + L  + I ++ + +  L+ L  L L D + +  +  P  G
Sbjct: 119 N-GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIV-PLAG 173

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
           L  L  LYL+   I++L  +L  L +L+ L L        P +    S L   
Sbjct: 174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN--HQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 4e-17
 Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 34/243 (13%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
                + +  NL     +      +   +I++I+ + + I+ +              +  
Sbjct: 17  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQ------------GIQY 63

Query: 99  CKNLKTLP---------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 149
             N+  L            L  LK+L  + L  + I++L S ++ L  L  L L     +
Sbjct: 64  LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG-I 121

Query: 150 KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLS 209
             +      L  L  LYL +  IT++   L  L+ L+ L LE N    I   +  L+KL 
Sbjct: 122 SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQ 178

Query: 210 SLLVSYC--ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKL 267
           +L +S      L++L  L  NL  L+               +++      N     D  L
Sbjct: 179 NLYLSKNHISDLRALAGLK-NLDVLELFSQE----CLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 268 RGI 270
              
Sbjct: 234 VTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 115 LEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 174
           + E     + I+++  P +  +     +L   KS+       + L S+  +   +  I  
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKK-KSVTDAV-TQNELNSIDQIIANNSDIKS 57

Query: 175 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLPCNLYWL 232
           + + +  L ++ +L+L  N    I + +  L  L  L +     + L SL  L   L  L
Sbjct: 58  V-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLK-KLKSL 114

Query: 233 DAQHC--TTLESLSGL 246
             +H   + +  L  L
Sbjct: 115 SLEHNGISDINGLVHL 130

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           +Q+LN L+ L L    ++  L  + +   I ++ L G  ++ + S+I  L  +  L+L  
Sbjct: 59  VQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTS 116

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
                T  + L  L +L+ + L  + I  + SP+  L+ L  L +G+ + +  L  P   
Sbjct: 117 --TQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQ-VSDLT-PLAN 171

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 218
           L  LT L   D  I+++   L  L +L E++L+ N    +   +   S L  + ++    
Sbjct: 172 LSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQ-T 228

Query: 219 LQSLPKL 225
           + + P  
Sbjct: 229 ITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 12/214 (5%)

Query: 49  NLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS 108
           +++  + +  +    +  N  KI    + + +   +   L  +  L+      + T+   
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGT-GVTTI-EG 58

Query: 109 LCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 168
           +  L +L  + L  + I +L +P++ L+ +  L+L     LK++     GL S+  L LT
Sbjct: 59  VQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115

Query: 169 DCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLP 226
              IT++   L  LS+L+ LYL+ N    I   +  L+ L  L +       L  L  L 
Sbjct: 116 STQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 227 CNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNEN 260
             L  L A     +  +S L S    +  +L  N
Sbjct: 174 -KLTTLKADD-NKISDISPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           I  L  +  L+L+   ++  +  ++   N++ + LD   I  + S +  L+ L  L++G+
Sbjct: 103 IAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGN 160

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
            + +  L + L  L  L  +    + I ++ SP+  L  L  + L + + +  +  P   
Sbjct: 161 AQ-VSDL-TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQ-ISDVS-PLAN 215

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 202
             +L  + LT+  IT  P        +  +    +     P +I
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 6e-18
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 43/266 (16%)

Query: 3   HSNIEQLSESV-QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE 61
              IE++      +   + ++ M    I  +   P + Q++  L +L L     L SLP 
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERN-DLSSLPR 140

Query: 62  --ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI 118
               +   +  + +    +E +        + L  L L     L  +  SL  + SL   
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHA 197

Query: 119 CLTGSAIEELPSPIECLSALCVLDL----------GDCKSLKSLKL---------PFDGL 159
            ++ + +  L  PI    A+  LD                L  LKL              
Sbjct: 198 NVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253

Query: 160 YSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 218
             L  + L+   + ++       +  LE LY+  N    +      +  L  L +S+   
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-H 312

Query: 219 LQSLPKLPCNLYWLDAQHCTTLESLS 244
           L  + +        +      LE+L 
Sbjct: 313 LLHVER--------NQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
               Q    L  L LS   +L  +  +S   ++    +    +  L         + EL+
Sbjct: 164 DDTFQATTSLQNLQLSSN-RLTHVD-LSLIPSLFHANVSYNLLSTLAI----PIAVEELD 217

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 154
                ++  +   +     L  + L  + + +    +     L  +DL   + L+ +   
Sbjct: 218 ASHN-SINVVRGPVNV--ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYH 272

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 214
           PF  +  L  LY+++  +  L      + +L+ L L  N+   +  +  +  +L +L + 
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332

Query: 215 YCERLQSLPK--LPCNLYWLDAQH 236
           +   + +L        L  L   H
Sbjct: 333 HN-SIVTLKLSTHH-TLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
           S +     +  L+ S    +  +    +   +  + L    + +    +     L+E++L
Sbjct: 205 STLAIPIAVEELDASHN-SINVVRGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDL 261

Query: 97  GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
              + L+ +      K++ LE + ++ + +  L    + +  L VLDL     L  ++  
Sbjct: 262 SYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 319

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
                 L  LYL   +I  L   L    +L+ L L  N+++      +    ++   V  
Sbjct: 320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDD 376

Query: 216 CER 218
            ++
Sbjct: 377 ADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 28/149 (18%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 80  ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSAL 138
            + S++       ++++               L + + +    S + +LP+ + +    +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 139 CVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAITELPESLGL-LSSLEELYLERNNFE 196
            +L+L D + ++ +    F   +++  LY+   AI  LP  +   +  L  L LERN+  
Sbjct: 78  ELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 197 RIPESI-IRLSKLSSLLVSYCERLQSLPK 224
            +P  I     KL++L +S    L+ +  
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNN-NLERIED 164

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
               Q    L  L LS   +L  +  +S   ++    +    +  L         + EL+
Sbjct: 158 DDTFQATTSLQNLQLSSN-RLTHVD-LSLIPSLFHANVSYNLLSTLAI----PIAVEELD 211

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KL 154
                ++  +   +     L  + L  + + +    +     L  +DL   + L+ +   
Sbjct: 212 ASHN-SINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE-LEKIMYH 266

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS 214
           PF  +  L  LY+++  +  L      + +L+ L L  N+   +  +  +  +L +L + 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 215 YCERLQSLPK--LPCNLYWLDAQH 236
           +   + +L        L  L   H
Sbjct: 327 HN-SIVTLKLSTHH-TLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
           S +     +  L+ S    +  +    +   +  + L    + +    +     L+E++L
Sbjct: 199 STLAIPIAVEELDASHN-SINVVRGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDL 255

Query: 97  GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
              + L+ +      K++ LE + ++ + +  L    + +  L VLDL     L  ++  
Sbjct: 256 SYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN 313

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
                 L  LYL   +I  L   L    +L+ L L  N+++      +    ++   V  
Sbjct: 314 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDD 370

Query: 216 CER 218
            ++
Sbjct: 371 ADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 81  LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALC 139
           + S++       ++++               L + + +    S + +LP+ + +    + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 140 VLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGL-LSSLEELYLERNNFER 197
           +L+L D + ++ +    F   +++  LY+   AI  LP  +   +  L  L LERN+   
Sbjct: 73  LLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 198 IPESIIR-LSKLSSLLVSYCERLQSLPK 224
           +P  I     KL++L +S    L+ +  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN-NLERIED 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 19/218 (8%)

Query: 45  LVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKN 101
             +LNL    +++ +   S     ++E + L    I  +       L+ L  L L D   
Sbjct: 66  TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123

Query: 102 LKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL-PFDG 158
           L T+P+ +   L  L+E+ L  + IE +PS     + +L  LDLG+ K L  +    F+G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCE 217
           L +L YL L  C + E+P +L  L  L+EL L  N+   I     + L  L  L +    
Sbjct: 184 LSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 218 RLQSLPK-----LPCNLYWLDAQHCTTLESLS-GLFSS 249
           ++Q + +     L  +L  ++  H   L  L   LF+ 
Sbjct: 242 QIQVIERNAFDNLQ-SLVEINLAHN-NLTLLPHDLFTP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
                 +  L  L+L    +L  +                        +   LS L  LN
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYIS---------------------EGAFEGLSNLRYLN 191

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSL-K 153
           L  C NL+ +P +L  L  L+E+ L+G+ +  +     + L  L  L +   + ++ + +
Sbjct: 192 LAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER 248

Query: 154 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 195
             FD L SL  + L    +T LP      L  LE ++L  N +
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 129 PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEE 187
           PS   C +    +     K+L+ +  P     +   L L +  I  +   S   L  LE 
Sbjct: 36  PSVCSCSNQFSKVICVR-KNLREV--PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 188 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 223
           L L RN+   I       L+ L++L +    RL ++P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP 128

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 23/239 (9%)

Query: 53  CS--KLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSL 109
           C    L  +PE+ +  ++  + L   +I EL   S   L  L  L +        + ++ 
Sbjct: 17  CINRGLHQVPELPA--HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 110 C-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTY 164
              L SL  + L  +   +L +     L+ L VL L  C  L    L    F  L SL  
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEM 133

Query: 165 LYLTDCAITEL-PESL-GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
           L L D  I ++ P S    +     L L  N  + I E    L        +   RL S+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFTLL-RLSSI 190

Query: 223 PKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLM 281
                N YWL  + C      + + +        L+ N      +     DA+   ++ 
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITT------LDLSGN-GFKESMAKRFFDAIAGTKIQ 242

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 14/188 (7%)

Query: 20  NQIIMAACNIFTKTPNPSLIQHL---NKLVILNLSGCSKLKSLPEISSAG----NIEKIL 72
           N    +    F      + IQ L   N   + +  G +  K     +  G     ++   
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 73  LDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS 130
           L  + I  L  S+    + L +L L     +  +   +   L  L ++ L+ + +  + S
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 131 PI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEE 187
            + E L  L VLDL     +++L    F GL +L  L L    +  +P+     L+SL++
Sbjct: 341 RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 188 LYLERNNF 195
           ++L  N +
Sbjct: 400 IWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 10/166 (6%)

Query: 11  ESVQHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKSLPEISSAG--N 67
           +S+      N         F    N +      + +   +LS  SK+ +L +   +   +
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTD 300

Query: 68  IEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAI 125
           +E++ L    I ++  +    L+ LL+LNL     L ++ S +   L  LE + L+ + I
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 126 EELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTD 169
             L       L  L  L L   + LKS+    FD L SL  ++L  
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL 154
            C  + L  +P     +  ++   L+ ++I EL       L  L  L +        ++ 
Sbjct: 16  ICINRGLHQVPELPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN 72

Query: 155 -PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE--RIPESI-IRLSKLS 209
             F GL SL  L L      +L       L++LE L L + N +   +  +    L+ L 
Sbjct: 73  NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 210 SLLVSYCERLQSLP 223
            L++     ++ + 
Sbjct: 133 MLVLRDN-NIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 37/255 (14%), Positives = 82/255 (32%), Gaps = 36/255 (14%)

Query: 3   HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE- 61
            ++I +L+E+     +  Q +             +  + L+ L+IL L   ++   L   
Sbjct: 39  LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETG 97

Query: 62  -ISSAGNIEKILLDGTAIEELPSSIGC---LSRLLELNLGDCKNLKTLP--SSLCKLKSL 115
             +   N+E + L    ++    S      L+ L  L L D   +K +   S    ++  
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRF 156

Query: 116 EEICLTGSAIEELPSPI-----------ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 164
             + LT + ++ +                 LS++ + D+ +               S+T 
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 165 LYLTDCAITELPE----SLGLLSSLEELYLE----------RNNFERIPESIIRLSKLSS 210
           L L+     E            + ++ L L             NF+       +  + S 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 211 LLVSYCE--RLQSLP 223
           +        ++ +L 
Sbjct: 277 VKTCDLSKSKIFALL 291

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 4e-17
 Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           +      LN +  +  +    +KS+  I    N+ K+ L+G  + ++   +  L  L  L
Sbjct: 38  DAVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWL 95

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK------- 147
            L + K +K L SSL  LK L+ + L  + I ++ + +  L  L  L LG+ K       
Sbjct: 96  FLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVL 152

Query: 148 ----SLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNN 194
                L +L L         P  GL  L  LYL+   I++L  +L  L +L+ L L    
Sbjct: 153 SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 211

Query: 195 FERIPESIIRLSKLSSL 211
               P +    S L   
Sbjct: 212 CLNKPIN--HQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 41  HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 100
              + +  NL   S +      +   +I++I+ + + I+ +              +    
Sbjct: 22  AFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQ------------GIQYLP 68

Query: 101 NLKTLP---------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKS 151
           N+  L            L  LK+L  + L  + +++L S ++ L  L  L L     +  
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-ISD 126

Query: 152 LKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
           +      L  L  LYL +  IT++   L  L+ L+ L LE N    I   +  L+KL +L
Sbjct: 127 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNL 183

Query: 212 LVSYC--ERLQSLPKLPCNLYWLDAQHCT 238
            +S      L++L  L  NL  L+     
Sbjct: 184 YLSKNHISDLRALAGLK-NLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
           ++ L KL  L+L     +  +  +     +E + L    I ++ + +  L++L  L+L D
Sbjct: 108 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED 165

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
            + +  +   L  L  L+ + L+ + I +L   +  L  L VL+L   + L         
Sbjct: 166 NQ-ISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 200
           L     +  TD ++   PE +      E+  ++ +  E   E
Sbjct: 223 LVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 184
           I+++    +  +     +L   KS+       + L S+  +   +  I  + + +  L +
Sbjct: 14  IKQI-FSDDAFAETIKDNLKK-KSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPN 69

Query: 185 LEELYLERNNFERIPESIIRLSKLSSLLVSYC--ERLQSLPKLPCNLYWLDAQHC--TTL 240
           + +L+L  N    I + +  L  L  L +     + L SL  L   L  L  +H   + +
Sbjct: 70  VTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDI 127

Query: 241 ESLSGL 246
             L  L
Sbjct: 128 NGLVHL 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 13/237 (5%)

Query: 9   LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNI 68
              SV      N+++     I   +        LN L   N S    +  L ++ +   I
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TI 288

Query: 69  EKILLDGTAIEELPSSIGC-LSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIE 126
            ++ +    +    S++   L ++  + + + K +  +P S  + LKSLE + L+ + + 
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 127 EL----PSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDCAITELPESLG 180
           E      +      +L  L L      S++        L +LT L ++      +P+S  
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407

Query: 181 LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 237
               +  L L       +   I     L  L VS    L S       L  L     
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN 461

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 35/247 (14%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
              ++    L +L L    ++ ++                        +   L  L  L+
Sbjct: 43  HGDLRACANLQVLILKSS-RINTIE---------------------GDAFYSLGSLEHLD 80

Query: 96  LGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCKSLKSL 152
           L D  +L +L SS    L SL+ + L G+  + L        L+ L  L +G+ ++   +
Sbjct: 81  LSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 153 -KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESII-RLSKLS 209
            ++ F GL SL  L +   ++     +SL  +  +  L L  +    + E     LS + 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 210 SLLVSYC------ERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKL 263
            L +              + ++   +  L  +     +               L+E    
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 264 DRKLRGI 270
           D  L G+
Sbjct: 260 DCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 34  PNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGCLS 89
            N +       L  L LS    L+S+ +         N+  + +       +P S     
Sbjct: 352 KNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 90  RLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL 149
           ++  LNL     ++ + +  C  ++LE + ++ + ++        L  L  L +   K L
Sbjct: 411 KMRFLNLSST-GIRVVKT--CIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNK-L 463

Query: 150 KSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 195
           K+L         L  + ++   +  +P+     L+SL++++L  N +
Sbjct: 464 KTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 36/279 (12%), Positives = 78/279 (27%), Gaps = 58/279 (20%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPS-S 84
           N +      SL  +L  L  L +        +  I  AG  ++ ++ +   ++    S S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 85  IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDL 143
           +  +  +  L L   ++   L      L S+  + L  + +     SP+        +  
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 144 GDCK-------SLKSLKLPFDGLYSLTYLYLTDCAITEL--------------------- 175
              +       S   L      +  L+ +   DC +  L                     
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 176 ---------------PESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERL 219
                               LL  ++ + +E +    +P S  + L  L  L +S    +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LM 346

Query: 220 QSLPKLPC-------NLYWLDAQHC--TTLESLSGLFSS 249
                          +L  L        +++    +  +
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSL-K 153
           D   ++  ++PS L    +++ + L+ + I  +    +   + L VL L   + + ++  
Sbjct: 11  DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG 67

Query: 154 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESII--RLSKLSS 210
             F  L SL +L L+D  ++ L  S  G LSSL+ L L  N ++ +  + +   L+ L +
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 211 LLVSYCERLQSLPK 224
           L +   E    + +
Sbjct: 128 LRIGNVETFSEIRR 141

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 20/230 (8%)

Query: 45  LVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKN 101
              LNL   + ++ +   +     ++E + L   +I ++       L+ L  L L D   
Sbjct: 77  TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134

Query: 102 LKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDG 158
           L  +PS +   L  L E+ L  + IE +PS     + +L  LDLG+ K L+ + +  F+G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCE 217
           L++L YL L  C I ++P +L  L  LEEL +  N+F  I       LS L  L V    
Sbjct: 195 LFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS- 252

Query: 218 RLQSLPK-----LPCNLYWLDAQHCTTLESLS-GLFSSYKC-VFFYLNEN 260
           ++  + +     L  +L  L+  H   L SL   LF+  +  V  +L+ N
Sbjct: 253 QVSLIERNAFDGLA-SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 27/163 (16%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 95
                 +  L+ L+L    KL+ +                        +   L  L  LN
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYIS---------------------EGAFEGLFNLKYLN 202

Query: 96  LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSL-K 153
           LG C N+K +P +L  L  LEE+ ++G+   E+       LS+L  L + + + +  + +
Sbjct: 203 LGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER 259

Query: 154 LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF 195
             FDGL SL  L L    ++ LP      L  L EL+L  N +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 129 PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEE 187
           PS   C +    +     + L  +  P     +  YL L +  I  +   +   L  LE 
Sbjct: 47  PSVCSCSNQFSKVVCTR-RGLSEV--PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 188 LYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP 223
           L L RN+  +I       L+ L++L +     L  +P
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIP 139

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 19/213 (8%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAG----NIEKILLDGTAIEELPSSIGCLSRLLEL 94
              L  L  L+LS    L      S +     ++  + L       + ++   L  L  L
Sbjct: 346 KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

Query: 95  NLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 151
           +      LK +   S+   L+ L  + ++ +  +     I   L++L  L +      K 
Sbjct: 405 DFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKD 462

Query: 152 LKLP--FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSK 207
             L   F    +LT+L L+ C + ++       L  L+ L +  NN   +  S    L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 208 LSSLLVSYCERLQSLP----KLPCNLYWLDAQH 236
           LS+L  S+  R+++        P +L + +  +
Sbjct: 523 LSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 32/209 (15%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N      + S   + ++L  L+LS C +++++                        +   
Sbjct: 42  NPLKILKSYSF-SNFSELQWLDLSRC-EIETIE---------------------DKAWHG 78

Query: 88  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDC 146
           L  L  L L         P S   L SLE +    + +  L S PI  L  L  L++   
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 147 KSLKSLKLP--FDGLYSLTYLYLTDCAITELPESL-----GLLSSLEELYLERNNFERIP 199
             + S KLP  F  L +L ++ L+   I  +  +              L +  N  + I 
Sbjct: 139 F-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 200 ESIIRLSKLSSLLVSYCERLQSLPKLPCN 228
           +   +  KL  L +       ++ K    
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL---LDGTAIEELPSSI-GCLSRL 91
            +    L +L  L+    S LK + E S+  ++EK+L   +  T  +     I   L+ L
Sbjct: 392 SANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 92  LELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL 149
             L +          S+      +L  + L+   +E++     + L  L +L++     L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-L 509

Query: 150 KSL-KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF 195
             L    ++ LYSL+ L  +   I            SL    L  N+ 
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 43/254 (16%), Positives = 87/254 (34%), Gaps = 42/254 (16%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           +      L  +  ++L+G   +K L ++      + + +    +++ P+    L  L  L
Sbjct: 277 DIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSL 333

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
            L    N  ++      L SL  + L+ +A+                    C S   L  
Sbjct: 334 TLTM--NKGSISFKKVALPSLSYLDLSRNALSFSG----------------CCSYSDLGT 375

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII--RLSKLSSLL 212
                 SL +L L+      +  +   L  L+ L  + +  +R+ E      L KL  L 
Sbjct: 376 N-----SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 213 VSYCERLQSLP-----KLPCNLYWLDAQHCTTLESL-SGLFSSYKCVFF-YLNENFKLDR 265
           +SY    +         L  +L  L     +  ++  S +F++   + F  L++      
Sbjct: 431 ISYT-NTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC----- 483

Query: 266 KLRGIVEDALQNIQ 279
           +L  I       + 
Sbjct: 484 QLEQISWGVFDTLH 497

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 21/223 (9%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG------NIEKILLDGTAIEEL 81
           N       P+   +L  LV ++LS    ++++                 + +    I+ +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 82  PSSIGCLSRLLELNLGDCKNLKTLPSSLCK-LKSLEEICLTGSAIEELPS----PIECLS 136
                   +L EL L    N   +  +  + L  L    L     ++  +        + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 137 ALC-----VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 191
            LC        L          + F  L +++ + L   +I  L   +      + L + 
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSII 315

Query: 192 RNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC-NLYWLD 233
           R   ++ P     L  L SL ++  +   S  K+   +L +LD
Sbjct: 316 RCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESII 203
            C   K  K+P D   S   + L+   +  L   S    S L+ L L R   E I +   
Sbjct: 17  QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 204 R-LSKLSSLLVSYCERLQSLP 223
             L  LS+L+++    +QS  
Sbjct: 77  HGLHHLSNLILTGN-PIQSFS 96

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 37/218 (16%), Positives = 84/218 (38%), Gaps = 23/218 (10%)

Query: 12  SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLP-EISSAGNIE 69
           +     ++N + ++  N+    P PS + +L  L  L + G + L   +P  I+    + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 70  KILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL-----TGS 123
            + +  T +   +P  +  +  L+ L+        TLP S+  L +L  I       +G+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 124 AIEELPSPIECLSALC-VLDLGDCKSLKSL--KLPFD-GLYSLTYLYLTDCAIT-ELPES 178
               +P      S L   + +        L  K+P      +L ++ L+   +  +    
Sbjct: 165 ----IPDSYGSFSKLFTSMTISRN----RLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 179 LGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSY 215
            G   + ++++L +N+    +   +     L+ L +  
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 30/150 (20%)

Query: 81  LPSSIGCLSRLLELNLGDCKNL---KTLPSSLCKLKSLEEICL------TGSAIEELPSP 131
           L  +     R+  L+L    NL     +PSSL  L  L  + +       G     +P  
Sbjct: 42  LCDTDTQTYRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPA 96

Query: 132 IECLSALCVLDLGDCK-------SLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLS 183
           I  L+ L  L +            L  +K       +L  L  +  A++  LP S+  L 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIK-------TLVTLDFSYNALSGTLPPSISSLP 149

Query: 184 SLEELYLERNNFE-RIPESIIRLSKLSSLL 212
           +L  +  + N     IP+S    SKL + +
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 67  NIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI 125
           + + + L    +  L   S      L  L+L  C+       +   L  L  + LTG+ I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 126 EELPSP-IECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAIT--ELPESLGL 181
           + L       LS+L  L   +  +L SL+  P   L +L  L +    I   +LPE    
Sbjct: 89  QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 182 LSSLEELYLERNNFERI-PESIIRLSKLSSLLVS 214
           L++LE L L  N  + I    +  L ++  L +S
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 11/197 (5%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL--PSSI 85
            +  K            L  L+LS    +           +E +    + ++++   S  
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 86  GCLSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLD 142
             L  L+ L++    + +         L SLE + + G++ +E  LP     L  L  LD
Sbjct: 418 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 143 LGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE 200
           L  C+ L+ L    F+ L SL  L ++      L       L+SL+ L    N+     +
Sbjct: 477 LSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 201 SIIR--LSKLSSLLVSY 215
             ++   S L+ L ++ 
Sbjct: 536 QELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 32/209 (15%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N      + S      +L +L+LS C              I+ I            +   
Sbjct: 38  NPLRHLGSYSF-FSFPELQVLDLSRC-------------EIQTIE---------DGAYQS 74

Query: 88  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 146
           LS L  L L           +   L SL+++    + +  L   PI  L  L  L++   
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 147 KSLKSLKLP--FDGLYSLTYLYLTDCAITEL-PESLGLLSSLE----ELYLERNNFERIP 199
             ++S KLP  F  L +L +L L+   I  +    L +L  +      L L  N    I 
Sbjct: 135 L-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 200 ESIIRLSKLSSLLVSYCERLQSLPKLPCN 228
               +  +L  L +       ++ K    
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 32  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGC 87
           K  N      L  L  L+LS  + L      S +     +++ + L    +  + S+   
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 88  LSRLLELNLGDCKNLKTL--PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLG 144
           L +L  L+     NLK +   S    L++L  + ++ +            LS+L VL + 
Sbjct: 395 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 145 DCKSLKSLKLP--FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPES 201
              S +   LP  F  L +LT+L L+ C + +L P +   LSSL+ L +  NNF  +   
Sbjct: 454 GN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 202 IIR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 236
             + L+ L  L  S    + +         P +L +L+   
Sbjct: 513 PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 43/218 (19%), Positives = 66/218 (30%), Gaps = 20/218 (9%)

Query: 32  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSA----GNIEKILLDGTAIEELPSSIGC 87
           +  + S ++ L  L I           L +I        N+    L    IE +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY- 302

Query: 88  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 147
                 L L +CK  +     L  LK L      G            L +L  LDL    
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNG 358

Query: 148 SLKSLKLP--FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER-IPESIIR 204
                       G  SL YL L+   +  +  +   L  LE L  + +N ++    S+  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 205 -LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQH 236
            L  L  L +S+    +         L  +L  L    
Sbjct: 419 SLRNLIYLDISHT-HTRVAFNGIFNGLS-SLEVLKMAG 454

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 26/172 (15%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           +   +    S+   L  L+ L++S     +                              
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF---------------------NGIFNG 443

Query: 88  LSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 145
           LS L  L +      +   P    +L++L  + L+   +E+L P+    LS+L VL++  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 146 CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL--GLLSSLEELYLERNNF 195
                    P+  L SL  L  +   I    +       SSL  L L +N+F
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 21/228 (9%)

Query: 36  PSLIQHLNKLVILNLSGC--SKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRL- 91
              I HL  L  LN++       K     S+  N+E + L    I+ +  + +  L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 92  ---LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI--EELPSPIECLSALCVLDLGDC 146
              L L+L     +  +     K   L ++ L  +      + + I+ L+ L V  L   
Sbjct: 177 LLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 147 KSLKSLKLP------FDGLYSLTYLYLT----DCAITELPESLGLLSSLEELYLERNNFE 196
           +      L        +GL +LT         D  + ++ +    L+++    L     E
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 197 RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 244
           R+            L +  C+  Q       +L  L         + S
Sbjct: 296 RVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 53  CSKLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLC 110
           C  ++ +P +    + + + L  T +  +PS +   L  +  + +     L+ L S S  
Sbjct: 20  CKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 111 KLKSLEEICLTGS-AIEELPSPI-ECLSALCVLDLGDCKSLKSL--KLPFDGLYSLTYLY 166
            L  +  I +  +  +  +     + L  L  L + +   LK                L 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILE 136

Query: 167 LTD-CAITELPESL--GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP 223
           +TD   +T +P +   GL +    L L  N F  +       +KL ++ ++  + L  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 224 -----KLPCNLYWLDAQHCTTLESL-SGLFSS 249
                 +      LD    T++ +L S     
Sbjct: 197 KDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 40  QHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP--SSIGCLSRLLELN 95
            +L+K+  + +     L  +    +     ++ + +  T ++  P  + +        L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 96  LGDCKNLKTLPS-SLCKLKS-LEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL- 152
           + D   + ++P  +   L +    + L  +    +       + L  + L   K L  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 153 KLPFDGLYS-LTYLYLTDCAITELPESLGLLSSLEELYLERNNF 195
           K  F G+YS  + L ++  ++T LP     L  L+EL   RN +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIA-RNTW 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 98
              L   V  NL     +  L        ++    D + I+ L + +   + L EL+L  
Sbjct: 15  DPGLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSH 72

Query: 99  CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDG 158
            + +  L S L  L  LEE+ +  + ++ L + I     L  L L + + L+        
Sbjct: 73  NQ-ISDL-SPLKDLTKLEELSVNRNRLKNL-NGIPSAC-LSRLFLDNNE-LRDTD-SLIH 126

Query: 159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
           L +L  L + +  +  +   LG LS LE L L  N        + RL K++ +
Sbjct: 127 LKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWI 177

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 22/226 (9%)

Query: 39  IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELP--SSIGCLSRLLELNL 96
           I  +  +  + LSG  KL +LP+I+   N+  I L    +E L     +  +  L  L L
Sbjct: 377 IHFIPSIPDIFLSGN-KLVTLPKINLTANL--IHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 97  GDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSP------IECLSALCVLDLGDCKSL 149
              +           +  SLE++ L  + ++            E LS L VL L     L
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-L 492

Query: 150 KSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKL 208
            SL    F  L +L  L L    +T L  +  L ++LE L + RN        +     L
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDV--FVSL 549

Query: 209 SSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVF 254
           S L +++ + +       C L         T  +++G  +   CV+
Sbjct: 550 SVLDITHNKFICE-----CELSTFINWLNHTNVTIAGPPADIYCVY 590

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 61/266 (22%), Positives = 94/266 (35%), Gaps = 37/266 (13%)

Query: 3   HSNIEQLSESV-QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE 61
           H  +  L+  V +    L  + +A   I            L+ L +LNLS    L  L  
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSYN-LLGELYS 331

Query: 62  ISSAG--NIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCK--------NLKTLPSSLC 110
            +  G   +  I L    I  +       L +L  L+L D          ++  +  S  
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391

Query: 111 KLKSLEEICLTGS-------AIEELP--SPIECLSALCVLDLGDCKSLKSLKLP--FDGL 159
           KL +L +I LT +        +E L     +  +  L +L L   +   S          
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSEN 450

Query: 160 YSLTYLYLTDCAITELPES------LGLLSSLEELYLERNNFERIPESIIR-LSKLSSLL 212
            SL  L+L +  +    E+         LS L+ LYL  N    +P  +   L+ L  L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 213 VSYCERLQSLPK--LPCNLYWLDAQH 236
           ++   RL  L    LP NL  LD   
Sbjct: 511 LNSN-RLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 36/263 (13%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS----SAGNIEKILLDGTAIEELPS 83
           N             LN L  ++ S   ++  + E          +    L   ++    S
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 84  S--IGCLSRLLELNL---------------GDCKNL--KTLPSSLCKLKSLEEICLTGSA 124
                C++    + L               G+  N   K+   SL     +         
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 125 IEELPSPI---ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLG 180
           I++           S++  LDL            F+ L  L  L L    I ++ + +  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 181 LLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSLP----KLPCNLYWLDAQ 235
            L +L+ L L  N    +  S    L K++ + +     +  +     K    L  LD +
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLR 370

Query: 236 HCTTLESLSGLFSSYKCVFFYLN 258
               L ++  +  S   +F   N
Sbjct: 371 DN-ALTTIHFI-PSIPDIFLSGN 391

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 37/225 (16%)

Query: 47  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTL 105
           I     C+ L  +P++ +    E++LL    I  + +S    L +L  L LG      T+
Sbjct: 8   IAFYRFCN-LTQVPQVLN--TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 106 PSSLCK-LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 164
                + L +L  + L  S I  L                           F GL+ L  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDA-----------------------FQGLFHLFE 101

Query: 165 LYLTDCAITEL---PESLGLLSSLEELYLERNNFERIPE--SIIRLSKLSSLLVSYCERL 219
           L L  C +++          L +L  L L +N    +    S  +L+ L S+  S   ++
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QI 160

Query: 220 QSLPKLPCNLYWLDAQHCTTLE-SLSGLFSSYKCVFFYLNENFKL 263
             +      L  L  +  +    + + L+S     +      F+ 
Sbjct: 161 FLVC--EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 33/216 (15%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---P 82
                T +    ++L  L IL+L    K+  L         ++ ++ L    + +     
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 83  SSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEELP----SPIECLS 136
                L  L  L+L     +++L    S  KL SL+ I  + + I  +      P++  +
Sbjct: 117 GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 137 ALCVLDLGDCKSLKSLKLPFDGLY------SLTYLYLTDCAITELPE------------- 177
            L    L        + + +           L  L ++    T                 
Sbjct: 176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 178 SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213
           SL L   +       +N +   ++       SS+  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 10/195 (5%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSI 85
           N   +     +  +L KL  + +   + L  +   +     N++ +L+  T I+ LP   
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 86  GC-LSRLLELNLGDCKNLKTLPS-SLCKLKS-LEEICLTGSAIEELPSPIECLSALCVLD 142
                + + L++ D  N+ T+   S   L      + L  + I+E+ +     + L  L+
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 143 LGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE 200
           L D  +L+ L    F G      L ++   I  LP   L  L  L        N +++P 
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP- 240

Query: 201 SIIRLSKLSSLLVSY 215
           ++ +L  L    ++Y
Sbjct: 241 TLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 12/181 (6%)

Query: 53  CS--KLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS- 108
           C   K+  +P      N  ++    T +  +          L ++ +     L+ + +  
Sbjct: 16  CQESKVTEIPSDLPR-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 109 LCKLKSLEEICLTGS-AIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYL 165
              L  L EI +  +  +  +     + L  L  L + +   +K L  +          L
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLL 133

Query: 166 YLTD-CAITELPESL--GLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
            + D   I  +  +   GL      L+L +N  + I  S    ++L  L +S    L+ L
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 223 P 223
           P
Sbjct: 194 P 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF-ERIPESI 202
            C+  K  ++P D   +   L      +  + + +      LE++ + +N+  E I   +
Sbjct: 15  LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IR-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFY 256
              L KL  + +     L  +       LP NL +L   + T ++ L  +         +
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISN-TGIKHLPDV------HKIH 126

Query: 257 LNENFKLD----RKLRGIVEDALQNIQ 279
             +   LD      +  I  ++   + 
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLS 153

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPS- 107
           C    L+++P  I +    ++I L G  I  +P++       L  L L     L  + + 
Sbjct: 18  CPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAA 74

Query: 108 SLCKLKSLEEICLTG-SAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTY 164
           +   L  LE++ L+  + +  +       L  L  L L  C  L+ L    F GL +L Y
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQY 133

Query: 165 LYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLVSYCERLQSL 222
           LYL D A+  LP+ +   L +L  L+L  N    +PE   R L  L  LL+    R+  +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192

Query: 223 PK 224
             
Sbjct: 193 HP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 43/203 (21%)

Query: 40  QHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNL 96
             L  L  L+LS  ++L+S+        G +  + LD   ++EL   +   L+ L  L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 97  GDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
            D   L+ LP  +   L +L  + L G+ I  +P                          
Sbjct: 137 QDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERA----------------------- 172

Query: 156 FDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESIIR-LSKLSSLLV 213
           F GL+SL  L L    +  +   +   L  L  LYL  NN   +P   +  L  L  L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 214 S----YCERLQSLPKLPCNLYWL 232
           +     C+         C    L
Sbjct: 233 NDNPWVCD---------CRARPL 246

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII 203
            C       +P     +   ++L    I+ +P  S     +L  L+L  N   RI  +  
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 204 R-LSKLSSLLVSYCERLQSLP-----KLPCNLYWLDAQHCTTLESL-SGLFS 248
             L+ L  L +S   +L+S+       L   L+ L    C  L+ L  GLF 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRC-GLQELGPGLFR 126

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEK----ILLDGTAIEELPSSI-GCLSR 90
            S  + L+ L  LNL G    K+L E S   ++ K     + +     ++       L+ 
Sbjct: 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 91  LLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD--C 146
           L EL +    +L++    SL  ++++  + L       L     +  S++  L+L D   
Sbjct: 176 LEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 147 KSLKSLKLP------FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 200
            +    +L           ++   + +TD ++ ++ + L  +S L EL   RN  + +P+
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

Query: 201 SII-RLSKLSSL 211
            I  RL+ L  +
Sbjct: 295 GIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLL 92
            S +Q    L  L L+    + ++ E   SS G++E + L    +  L SS    LS L 
Sbjct: 69  NSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 93  ELNLGDCKNLKTLP--SSLCKLKSLEEI-CLTGSAIEELPSPI-ECLSALCVLDLGDCKS 148
            LNL      KTL   S    L  L+ +         ++       L+ L  L++     
Sbjct: 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD- 185

Query: 149 LKSL-KLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPESII--- 203
           L+S        + ++++L L       L E  + + SS+E L L   + +    S +   
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 204 ---RLSKLSSL--LVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS-GLFSSYK 251
               L K  +   +    E L  + KL      L  L+      L+S+  G+F    
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT 301

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 16/182 (8%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-S 84
           N +      SL  HL KL IL +        +     +    +E++ +D + ++     S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 85  IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICL-----TGSAIEELPS----PIEC 134
           +  +  +  L L        L    +    S+E + L           EL +     +  
Sbjct: 194 LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 135 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERN 193
                 + + D  SL  +    + +  L  L  +   +  +P+     L+SL++++L  N
Sbjct: 253 KFTFRNVKITDE-SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 194 NF 195
            +
Sbjct: 312 PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-K 153
                +L ++PS L   ++++ + L+ + I  + +   +    L  L L     + ++ +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEE 93

Query: 154 LPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII--RLSKLSS 210
             F  L SL +L L+   ++ L  S    LSSL  L L  N ++ + E+ +   L+KL  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 211 LLVSYCERLQSLP 223
           L V   +    + 
Sbjct: 154 LRVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 14  QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKI 71
            H  KL  + +   + FTK         L  L  L +     L+S     + S  N+  +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHL 203

Query: 72  LLDGTAIEELPSSI-GCLSRLLELNLGD----CKNLKTLPS----SLCKLKSLEEICLTG 122
           +L       L        S +  L L D      +   L +    SL K  +   + +T 
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 123 SAIEELPSPIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTD 169
            ++ ++   +  +S L  L+    + LKS+    FD L SL  ++L  
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHT 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 42  LNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTAIEELPSSIGCLS--RLLELNLG 97
            + LV L +    +++ +P+   +G  N+  I + G  +E      G     +L  L + 
Sbjct: 122 PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 98  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLP 155
           +   L  +P  L   ++L E+ L  + I+ +        S L  L LG  + ++ +    
Sbjct: 181 EA-KLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS 236

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
              L +L  L+L +  ++ +P  L  L  L+ +YL  NN  ++  +             Y
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 18/190 (9%)

Query: 36  PSLIQHLNKLVILNLSG-CSKLKSLPEISSAG-NIEKILLDGTAIEELPSSIGCLSRLLE 93
             +   L  +  + + G   +       +  G  +  + +    +  +P        L E
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNE 197

Query: 94  LNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 151
           L+L   K ++ +    L +   L  + L  + I  + +     L  L  L L + K L  
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSR 255

Query: 152 LKLPFDGLYSLTYLYLTDCAITELPES-------LGLLSSLEELYLERNN--FERIPESI 202
           +      L  L  +YL    IT++  +           +    + L  N   +  +  + 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 203 IR-LSKLSSL 211
            R ++   ++
Sbjct: 316 FRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 86  GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLG 144
           GC   L  +   D   LK +P  +        + L  + I EL     + L  L  L L 
Sbjct: 30  GCHCHLRVVQCSD-LGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 145 DCKSLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII 203
           + K +  + +  F  L  L  LY++   + E+P    L SSL EL +  N   ++P+ + 
Sbjct: 87  NNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGV- 142

Query: 204 RLSKLSSLLV 213
             S L ++  
Sbjct: 143 -FSGLRNMNC 151

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 37/158 (23%)

Query: 44  KLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNL 102
           KL  L +S   KL  +P+      + ++ LD   I+ +    +   S+L  L LG  + +
Sbjct: 173 KLNYLRISEA-KLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-I 229

Query: 103 KTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD---------------- 145
           + + + SL  L +L E+ L  + +  +P+ +  L  L V+ L                  
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289

Query: 146 ---CKSLKSLKLP-------------FDGLYSLTYLYL 167
                    + L              F  +     +  
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 23/216 (10%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGC--LSRLLELNLGDCKNLKTLPS 107
           CS  +L ++P+ + S      + L    +  L +      L+ L  L L     L  + S
Sbjct: 25  CSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS 81

Query: 108 -SLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTY 164
            +   + +L  + L+ + +  L   +   L AL VL L +   +  + +  F+ +  L  
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140

Query: 165 LYLTDCAITELPE----SLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERL 219
           LYL+   I+  P         L  L  L L  N  +++P + + +L       +     L
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL----YL 196

Query: 220 QSLP-KLPCNLYWLDAQ-HCTTLESLSGLFSSYKCV 253
            + P +  C LY L +      L S+        C+
Sbjct: 197 HNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM 232

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 11/171 (6%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           N+       + +    +L  LNL    +L  L    +   +  + L    ++ LP     
Sbjct: 41  NLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 88  LSRLLELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 145
           L  L  L++   + L +LP      L  L+E+ L G+ ++ LP  +      L  L L +
Sbjct: 99  LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 146 CKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 193
              L  L  P    +GL +L  L L + ++  +P+       L   +L  N
Sbjct: 158 NN-LTEL--PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 87  CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGD 145
            ++  LE+N    +NL  LP  L   K    + L+ + +           + L  L+L  
Sbjct: 8   KVASHLEVNCDK-RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 146 CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-R 204
            + L  L+     L  L  L L+   +  LP     L +L  L +  N    +P   +  
Sbjct: 65  AE-LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 205 LSKLSSLLVSYCERLQSLP-----KLPCNLYWLD 233
           L +L  L +     L++LP       P  L  L 
Sbjct: 123 LGELQELYLKGN-ELKTLPPGLLTPTP-KLEKLS 154

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 22/184 (11%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 108
           CS  KL ++P  I +  + +K+ L    +  LPS     L++L  L L D   L+TLP+ 
Sbjct: 23  CSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAG 79

Query: 109 LC-KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLT 163
           +  +LK+LE + +T + ++ LP  + + L  L  L L   + LKSL  P   FD L  LT
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSL--PPRVFDSLTKLT 136

Query: 164 YLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERL 219
           YL L    +  LP+  G+   L+SL+EL L  N  +R+PE    +L++L +L +    +L
Sbjct: 137 YLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQL 193

Query: 220 QSLP 223
           + +P
Sbjct: 194 KRVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 23/192 (11%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-G 86
           NI   T    L    NKL  L      +L  L           + L+   ++ LP+ I  
Sbjct: 34  NIPADTKKLDL--QSNKLSSLPSKAFHRLTKL---------RLLYLNDNKLQTLPAGIFK 82

Query: 87  CLSRLLELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLG 144
            L  L  L + D K L+ LP  +  +L +L E+ L  + ++ LP  + + L+ L  L LG
Sbjct: 83  ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 145 DCKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPE 200
             + L+SL  P   FD L SL  L L +  +  +PE     L+ L+ L L+ N  +R+PE
Sbjct: 142 YNE-LQSL--PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 201 SII-RLSKLSSL 211
                L KL  L
Sbjct: 199 GAFDSLEKLKML 210

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 5e-13
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 8/176 (4%)

Query: 37  SLIQHLNKLVILNLS--GCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           ++I  +  L  L           +L  +          L    + E        + +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
           +L    +L  L   L +L  +  + L+ + +  LP  +  L  L VL   D   L+++  
Sbjct: 447 HLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD- 502

Query: 155 PFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPESIIRLSKL 208
               L  L  L L +  + +      L     L  L L+ N+  +      RL+++
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 29/226 (12%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGC 87
           +   +     +    +      L          + ++   + +  L       L S +  
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELES 370

Query: 88  LSRLLELNLGDCKNLKTL---PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALC---- 139
              L EL   +   L T+     +L  L   +E     S ++ + P     L  L     
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430

Query: 140 ---VLDLGDCKSLKSLKL---------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEE 187
               +   +   ++ L L           + L  +T+L L+   +  LP +L  L  LE 
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 188 LYLERNNFERIPESIIRLSKLSSLLVSY--------CERLQSLPKL 225
           L    N  E +   +  L +L  LL+           + L S P+L
Sbjct: 491 LQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 32  KTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRL 91
             P   + +  + + I N +  S  + +                            +S  
Sbjct: 289 GFPQSYIYEIFSNMNIKNFT-VSGTRMVHM---------------------LCPSKISPF 326

Query: 92  LELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSPIEC---LSALCVLDLGDCK 147
           L L+  +   L       C  L  LE + L  + ++EL    E    + +L  LD+    
Sbjct: 327 LHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 148 SLKSL-KLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLS 206
                 K       SL  L ++   +T+      L   ++ L L  N  + IP+ +++L 
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLE 444

Query: 207 KLSSLLVSYCERLQSLPK 224
            L  L V+   +L+S+P 
Sbjct: 445 ALQELNVASN-QLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 47  ILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKT 104
           +++ S    L  +P+ +S       + +    I EL +S I  LS+L  L +   + ++ 
Sbjct: 4   LVDRSKNG-LIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQY 59

Query: 105 LPSSLC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP--FDGLYS 161
           L  S+    + LE + L+ + + ++         L  LDL       +L +   F  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNA-FDALPICKEFGNMSQ 116

Query: 162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
           L +L L+   + +         ++ ++ L         E    L   ++ 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 19/222 (8%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLL 92
             S I  L+KL IL +S   +++ L          +E + L    + ++         L 
Sbjct: 37  WTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLK 93

Query: 93  ELNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL 149
            L+L        LP       +  L+ + L+ + +E+    PI  L+   VL +     L
Sbjct: 94  HLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV-----L 147

Query: 150 KSLKLPFDGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIPESIIRL 205
                  +    L         I          +  +S      LE +N + + E     
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 206 SKLSSLL-VSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 246
             LS L  +    +L +L        W        L   + +
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 33/204 (16%)

Query: 40  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGD 98
             L KL  L LS  ++LK LPE      ++++ +    I ++  S+   L++++ + LG 
Sbjct: 97  APLVKLERLYLSK-NQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 99  CKNLKTL---PSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD---------- 145
              LK+      +   +K L  I +  + I  +P       +L  L L            
Sbjct: 155 NP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAAS 211

Query: 146 ---CKSLKSLKL-----------PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLE 191
                +L  L L                  L  L+L +  + ++P  L     ++ +YL 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271

Query: 192 RNNFERIPESIIRLSKLSSLLVSY 215
            NN   I  +       ++   SY
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASY 295

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 28/201 (13%), Positives = 74/201 (36%), Gaps = 15/201 (7%)

Query: 5   NIEQLSESV-QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
            I ++ +SV     ++  + +    + +        Q + KL  + ++    + ++P+  
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190

Query: 64  SAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLT 121
              ++ ++ LDG  I ++ + S+  L+ L +L L     +  + + SL     L E+ L 
Sbjct: 191 PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLN 248

Query: 122 GSAIEELPSPIECLSALCVLDLGD------CKSLKSLKLPFDGLYSLTYLYLTDCAITEL 175
            + + ++P  +     + V+ L +        +            S + + L    +   
Sbjct: 249 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 176 ---PESLGLLSSLEELYLERN 193
              P +   +     + L   
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLKL 154
            C    L+ +P  L        + L  + I E+     + L  L  L L + K +  +  
Sbjct: 37  QCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISP 93

Query: 155 P-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213
             F  L  L  LYL+   + ELPE   +  +L+EL +  N   ++ +S+   + L+ ++V
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSV--FNGLNQMIV 149

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 131 PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY 189
           P  C    C L +  C  L   K+P D       L L +  ITE+ +     L +L  L 
Sbjct: 26  PFRCQ---CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 190 LERNNFERIPESIIR-LSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQH 236
           L  N   +I       L KL  L +S   +L+ LP+ +P  L  L    
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHE 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 16/194 (8%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEI--SSAGNIEKILLDGTAIEELPSSI 85
            +F  +   +L     ++ I  LS  S    +  +   S  +   +        +     
Sbjct: 315 QVFLFSK-EALYSVFAEMNIKMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 86  -GCLSRLLELNLGDCKNLKTLPS---SLCKLKSLEEICLTGSAIEELPSPIEC--LSALC 139
              L RL  L L     LK           + SLE + ++ +++        C    ++ 
Sbjct: 373 CSTLKRLQTLIL-QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 140 VLDLGDCKSLKSLKLPFDGL-YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 198
           VL+L       S    F  L   +  L L +  I  +P+ +  L +L+EL +  N  + +
Sbjct: 432 VLNLSSNMLTGS---VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

Query: 199 PESII-RLSKLSSL 211
           P+ +  RL+ L  +
Sbjct: 489 PDGVFDRLTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 42  LNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 99
            +    LN +             S+   ++ ++L    ++           +  L   D 
Sbjct: 352 PSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 100 KNLKTLPS----SLCKL-KSLEEICLTGSAIEELPSPIECLSA-LCVLDLGDCKSLKSLK 153
             L +L S      C   +S+  + L+ + +    S   CL   + VLDL + + + S+ 
Sbjct: 411 S-LNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFRCLPPKVKVLDLHNNR-IMSIP 466

Query: 154 LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF 195
                L +L  L +    +  +P+     L+SL+ ++L  N +
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 21/217 (9%)

Query: 73  LDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPS 130
           L   +I EL    I  LS L  L L   + +++L   +    + LE + ++ + ++ +  
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117

Query: 131 PIECLSALCVLDLGDCKSLKSLKLP--FDGLYSLTYLYLTDCAITELP-------ESLGL 181
               +++L  LDL        L +   F  L  LT+L L+     +L            +
Sbjct: 118 --CPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174

Query: 182 LSSLEELYLERNNFERIPES-----IIRLSKLSSLLVSYCERLQSLPKLP-CNLYWLDAQ 235
           L  L   +++    E +         +     S   V     + +L  L   N+   D  
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 236 HCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVE 272
               +  LS L      +   L       +    + +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 28  NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKIL-LDGTAIEELPSSI- 85
           N+FT +        L +L  L L   + LK+  +++        L     ++  L S   
Sbjct: 363 NVFTDSV-FQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 86  ----GCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141
                    +L LNL       ++   L     ++ + L  + I  +P  +  L AL  L
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478

Query: 142 DLGDCKSLKSL-KLPFDGLYSLTYLYLT----DCA 171
           ++     LKS+    FD L SL Y++L     DC 
Sbjct: 479 NVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 35/179 (19%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 108
           C       +P+ +    + + + L    +  L S        L  L+L  C+ ++T+   
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG 70

Query: 109 LC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 167
               L  L  + LTG+ I+ L                           F GL SL  L  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA-----------------------FSGLSSLQKLVA 107

Query: 168 TDCAITELPESL-GLLSSLEELYLERNNFERIPESII--RLSKLSSLLVSYCERLQSLP 223
            +  +  L     G L +L+EL +  N  +          L+ L  L +S   ++QS+ 
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 38/193 (19%)

Query: 36  PSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLL 92
                   +L +L+LS C +++++ +    S  ++  ++L G  I+ L       LS L 
Sbjct: 45  SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 93  ELNLGDCKNLKTLPSSL-CKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCK-- 147
           +L   +   L +L +     LK+L+E+ +  + I+    P     L+ L  LDL   K  
Sbjct: 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 148 --------SLKSLKLP------------------FDGLYSLTYLYLTDCAITELPE-SLG 180
                    L  + L                   F  +  L  L L    +  +P+    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFD 221

Query: 181 LLSSLEELYLERN 193
            L+SL++++L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 20  NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG--NIEKILLDGTA 77
           N I   A   F+   +         L  L       L SL          ++++ +    
Sbjct: 86  NPIQSLALGAFSGLSS---------LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 135

Query: 78  IEELPSSIGC--LSRLLELNLGDCKNLKTLP----SSLCKLKSLE-EICLTGSAIEELPS 130
           I+          L+ L  L+L   K ++++       L ++  L   + L+ + +  +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 131 PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTD 169
                  L  L L   + LKS+    FD L SL  ++L  
Sbjct: 195 GAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 47/192 (24%)

Query: 53  CS--KLKSLPE-ISSAGNIEKILLDGTAIEELPSSIG--CLSRLLELNLGDCKNLKTLPS 107
           CS  KL  +PE I       ++ L+      L ++     L +L ++N  + K +  +  
Sbjct: 18  CSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE 74

Query: 108 -SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY 166
            +      + EI LT + +E +   +                       F GL SL  L 
Sbjct: 75  GAFEGASGVNEILLTSNRLENVQHKM-----------------------FKGLESLKTLM 111

Query: 167 LTDCAITELPE-SLGLLSSLEELYLERNNFERIPESI-IRLSKLSSL-LVS---YCERLQ 220
           L    IT +   S   LSS+  L L  N    +       L  LS+L L++    C    
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN--- 168

Query: 221 SLPKLPCNLYWL 232
                 C L WL
Sbjct: 169 ------CYLAWL 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 17/181 (9%)

Query: 40  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 99
             LN +  +  +  S +KS+  I    N+  + L G  + ++ + +  L+ L  L L   
Sbjct: 38  NELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTG- 94

Query: 100 KNLKTLPSSL-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP-- 155
             L++LP+ +  KL +L+E+ L  + ++ LP  + + L+ L  L+L   + L+SL  P  
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSL--PKG 151

Query: 156 -FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSS 210
            FD L +LT L L+   +  LPE  G+   L+ L++L L +N  + +P+ +  RL+ L  
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209

Query: 211 L 211
           +
Sbjct: 210 I 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 53  CS--KLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS-- 107
            S    +  P +  +     K  L   ++ +  +    L+ + ++   +  ++K++    
Sbjct: 5   VSTPIKQIFPDDAFAET--IKANLKKKSVTDAVTQNE-LNSIDQIIA-NNSDIKSVQGIQ 60

Query: 108 SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTY 164
            L  ++ L    L G+ + ++ + ++ L+ L  L L     L+SL  P   FD L +L  
Sbjct: 61  YLPNVRYLA---LGGNKLHDISA-LKELTNLTYLILTG-NQLQSL--PNGVFDKLTNLKE 113

Query: 165 LYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSL 222
           L L +  +  LP+ +   L++L  L L  N  + +P+ +  +L+ L+ L +    +LQSL
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSL 172

Query: 223 PK 224
           P+
Sbjct: 173 PE 174

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 47  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP 106
            L + G S L+ L        +E + + GTA   L         L  LNL +  +  T  
Sbjct: 88  ALRVLGISGLQEL-------TLENLEVTGTAPPPLLE--ATGPDLNILNLRNV-SWATRD 137

Query: 107 SSL-----CKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP----F 156
           + L          L+ + +  +         +    AL  LDL D   L    L      
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 157 DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIPESII--RLSKLSS 210
               +L  L L +  +                L+ L L  N+      +      S+L+S
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 211 LLVSYCERLQSLPK-LPCNLYWLDAQH 236
           L +S+   L+ +PK LP  L  LD  +
Sbjct: 258 LNLSFT-GLKQVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 40/205 (19%), Positives = 63/205 (30%), Gaps = 37/205 (18%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGN-----IEKILLDGTAIEEL 81
             +    P P L      L ILNL   S       ++         ++ + +        
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 82  P-SSIGCLSRLLELNLGDCKNL--KTLPSSLC--KLKSLEEICLTGSAIEELPSPIECLS 136
               +     L  L+L D   L  + L S+LC  K  +L+ + L  + +E        L+
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 137 A----LCVLDL-----------GDCKSLKSLK-----------LPFDGLYSLTYLYLTDC 170
           A    L  LDL             C     L            +P      L+ L L+  
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN 284

Query: 171 AITELPESLGLLSSLEELYLERNNF 195
            +   P    L   +  L L+ N F
Sbjct: 285 RLDRNPSPDEL-PQVGNLSLKGNPF 308

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 74/422 (17%), Positives = 133/422 (31%), Gaps = 121/422 (28%)

Query: 29  IFTKTPNP------SLIQHLNKL-----VILN-LSGCSKLKSLPEISSAGNIEKILLDGT 76
           +F K           L Q L +L     V+++ + G  K   +     A ++    L   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWV-----ALDV---CLSYK 175

Query: 77  AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKL--KSLEEICLTGSAIEELPSPIEC 134
              ++   I        LNL +C + +T+   L KL  +              +   I  
Sbjct: 176 VQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 135 LS--------------ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT-DCAITE-LPES 178
           +                L VL   + ++ K+    F+   S   L  T    +T+ L  +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL--NVQNAKAWN-AFNL--SCKILLTTRFKQVTDFLSAA 284

Query: 179 LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE-RLQSLPKLPCNLYWLDAQHC 237
                SL+             E         SLL+ Y + R Q LP+             
Sbjct: 285 TTTHISLDH---HSMTLTP-DEVK-------SLLLKYLDCRPQDLPREVLTTNPR---RL 330

Query: 238 TTL-ESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYP 296
           + + ES+    +++     + + N     KL  I+E +L  ++        E R+   + 
Sbjct: 331 SIIAESIRDGLATWD---NWKHVNCD---KLTTIIESSLNVLEP------AEYRK--MFD 376

Query: 297 ALQGHVVLPGN-EIPM------WFSSQGMGSSITLKMQPGCFS------NNKVFGFVFCA 343
            L    V P +  IP       WF    +  S  + +              K        
Sbjct: 377 RL---SVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHKYSLVEKQPKES------ 424

Query: 344 IVAFRDHHVRDWSFKFYCEFKIKLKD-CDPH--VIQRYLGRVNYVEPDHLLLGY---YFF 397
                   +       Y E K+KL++    H  ++  Y     + + D L+  Y   YF+
Sbjct: 425 --TISIPSI-------YLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFY 474

Query: 398 NH 399
           +H
Sbjct: 475 SH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 65/454 (14%), Positives = 141/454 (31%), Gaps = 138/454 (30%)

Query: 98  DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 157
           DCK+++ +P S+   + ++ I ++  A+         L +         K  + ++   +
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---------KQEEMVQKFVE 84

Query: 158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLE-RNNFERIPESI-------------I 203
            +  + Y +L     TE  +     S +  +Y+E R+      +               +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 204 R--LSKL----------------SSLLVSYCERLQSLPKLPCNLYWLDAQHCTT----LE 241
           R  L +L                + + +  C   +   K+   ++WL+ ++C +    LE
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 242 SLSGLFSSYKCVFFYLNENFK--------LDRKLRGIVEDA--------LQNI------- 278
            L  L       +   +++          +  +LR +++          L N+       
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 279 ------QLMATARWKEIREKISYPALQGHVVLPGNEIPMWFS---SQGMGSSITLKMQPG 329
                 +++ T R+K++ + +S  A   H+ L  +   M  +    + +     L  +P 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLS-AATTTHISL--DHHSMTLTPDEVKSLLLKY-LDCRPQ 316

Query: 330 CFSN--NKVFGFVFCAIVAF-RDHHVRDWSFKFYCEFKIKLKDCDP--HVIQRYLGRVNY 384
                           I    RD     W    +     K  +CD    +I+  L   N 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLAT-W--DNW-----KHVNCDKLTTIIESSL---NV 365

Query: 385 VEPDHLLLGYYF----FNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLDCCGVKKCGI 440
           +EP       +     F     +       +P         +L                 
Sbjct: 366 LEPA-EYRKMFDRLSVFP-PSAH-------IPT-------ILLSL--------------- 394

Query: 441 HLFHASDSMDSMEDPSKVFNRKEVEEPHPKRLKY 474
            ++      D M   +K+     VE+  PK    
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 47/298 (15%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIG 86
           C I   T    +   L+     ++S      +L        + K L      ++LP  + 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREV- 322

Query: 87  CLSRLLELNL-G----------------DCKNL-KTLPSSLCKLKSLE-EICLTGSAI-- 125
             +    L++                  +C  L   + SSL  L+  E        ++  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 126 EELPSPIECLSAL--------CVLDLGDCKSLKSL--KLPFDGLYSLTYLYLTDCAITEL 175
                P   LS +         ++ +       SL  K P +   S+  +YL      +L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKV--KL 439

Query: 176 PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY-------CERLQSLPKLPCN 228
                L  S+ + Y     F+        L +     + +        ER+     +  +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 229 LYWLDA---QHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQLMAT 283
             +L+       T   +   + ++ + + FY       D K   +V   L  +  +  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 28/247 (11%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP--EISSAGNIEKILLDGTAIEE--LP 82
            ++  K  +P +   L    ++           P  E  S   ++ + L  + IE   L 
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 83  SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEE--LPSPIECLSALC 139
             +   S+L  L+L   +    + ++L K  +L  + L+G S   E  L + +   S L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 140 VLDLGDCKSLKS---LKLPFDGLYSLTYLYLTDC-------AITELPESLGLLSSLEELY 189
            L+L  C                 ++T L L+          ++ L        +L  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLD 228

Query: 190 LERNNF--ERIPESIIRLSKLSSLLVSYCER-----LQSLPKLPCNLYWLDAQHCTTLES 242
           L  +        +   +L+ L  L +S C       L  L ++P  L  L         +
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGT 287

Query: 243 LSGLFSS 249
           L  L  +
Sbjct: 288 LQLLKEA 294

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 29/183 (15%)

Query: 11  ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKL--KSLPEISSAG-- 66
            ++  +  L ++ ++ C+ F++    +L+   ++L  LNLS C     K +    +    
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 67  NIEKILLDG-------TAIEELPSSIGCLSRLLELNLGDCKNL--KTLPSSLCKLKSLEE 117
            I ++ L G       + +  L   +     L+ L+L D   L          +L  L+ 
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQH 251

Query: 118 ICLTG------SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY--LYLTD 169
           + L+         + EL      +  L  L +       +L+L  + L  L     + T 
Sbjct: 252 LSLSRCYDIIPETLLELGE----IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 307

Query: 170 CAI 172
            A 
Sbjct: 308 IAR 310

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 14/135 (10%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKL 154
           DC  K L  +P++L   +++ EI L  + I+ +P         L  +DL + + +  L  
Sbjct: 17  DCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISEL-- 71

Query: 155 P---FDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIPESII-RLSKLS 209
               F GL SL  L L    ITELP+SL   L SL+ L L  N    +       L  L+
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 210 SLLVSYCERLQSLPK 224
            L +    +LQ++ K
Sbjct: 132 LLSLYD-NKLQTIAK 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 88  LSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 146
            S + EL L + ++ +  L     + + LE +      +  + + +  L+ L  L+L D 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE 200
           +    L++  +   +LT+L L+   I +L     L  L +L+ L L       + +
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 125 IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSS 184
               PS ++ L    VLD       K   L  D    L +L   +  +T +  +L  L+ 
Sbjct: 12  RNRTPSDVKEL----VLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNK 65

Query: 185 LEELYLERNNFERIPESIIR-LSKLSSLLVSYC--------ERLQSLPKL 225
           L++L L  N      E +      L+ L +S          E L+ L  L
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 24/138 (17%)

Query: 40  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 99
             + +LV L+ S  ++ K          +E +      +  + +++  L++L +L L D 
Sbjct: 17  SDVKELV-LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 100 KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159
           +    L     K  +L  + L+G+ I+               DL   + LK L+      
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIK---------------DLSTIEPLKKLE------ 113

Query: 160 YSLTYLYLTDCAITELPE 177
            +L  L L +C +T L +
Sbjct: 114 -NLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 31  TKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIG-CLS 89
            +     L     +L  L+      L S+  +     ++K+ L    +      +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 90  RLLELNLGDCK--NLKTLPSSLCKLKSLEEICLTGSAIEELP----SPIECLSALCVLD 142
            L  LNL   K  +L T+   L KL++L+ + L    +  L     +  + L  L  LD
Sbjct: 89  NLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 11/144 (7%)

Query: 88  LSRLLELNLGDCKN-LKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 146
            + + EL L +CK+    +     +  +LE + L    +  + S +  L  L  L+L + 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN 81

Query: 147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE---- 200
           +    L +  + L +LT+L L+   + ++     L  L  L+ L L       + +    
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 201 SIIRLSKLSSL---LVSYCERLQS 221
               L +L+ L        E   S
Sbjct: 142 VFKLLPQLTYLDGYDREDQEAPDS 165

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 31/158 (19%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
            P+ ++ L     L+    +  K     +   N+E + L    +  + S++  L +L +L
Sbjct: 22  TPAAVRELV----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKL 76

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
            L + +    L     KL +L  + L+G+ ++               D+   + LK L+ 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK---------------DISTLEPLKKLE- 120

Query: 155 PFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEEL 188
                  L  L L +C +T L +       LL  L  L
Sbjct: 121 ------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 119 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-P 176
           C    A++ L   +     L  L + + + L+ L+L    GL  L  L +    +  + P
Sbjct: 15  CTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 177 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWL 232
           ++      L  L L  N  E +    ++   L  L       L   P    C L WL
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL------VLSGNPLHCSCALRWL 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 24/117 (20%)

Query: 80  ELPSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSAL 138
           +    +     L EL + + ++L+ L    L  L  L  + +  S +  +          
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------- 72

Query: 139 CVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 195
                            F     L+ L L+  A+  L        SL+EL L  N  
Sbjct: 73  --------------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 107 SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY 166
           +         E+ L G  I  + +    L     +D  D + ++ L   F  L  L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLL 70

Query: 167 LTDCAITELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSL 211
           + +  I  + E L   L  L EL L  N+   +   +  L+ L SL
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 88  LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 147
             R  EL+L   K +  + +    L   + I  + + I +L      L  L  L + + +
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 148 SLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE 200
             +  +     L  LT L LT+ ++ EL +   L  L SL  L + RN       
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 47  ILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP 106
           ++ L+    ++   + ++A    ++ L G  I  + +    L +   ++  D + ++ L 
Sbjct: 1   MVKLT-AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL- 57

Query: 107 SSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCK--SLKSLKLPFDGLYSLT 163
                L+ L+ + +  + I  +   + + L  L  L L +     L  L  P   L SLT
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-PLASLKSLT 116

Query: 164 YLYLTDCAITELPE 177
           YL +    +T    
Sbjct: 117 YLCILRNPVTNKKH 130

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 21/172 (12%)

Query: 53  CS--KLKSLP-EISSAGNIEKILLDGTAIEELPSSI-GCLSRLLELNLGDCKNLKTLPSS 108
           C    L S+P  I +  + EK+ L  T +  L  +    L++L  LNL     L+TL + 
Sbjct: 21  CQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAG 77

Query: 109 L-CKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLT 163
           +   L  L  + L  + +  LP  + + L+ L  L LG  + LKSL  P   FD L  L 
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSL--PSGVFDRLTKLK 134

Query: 164 YLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKLSSL 211
            L L    +  +P   G    L++L+ L L  N  + +P     RL KL ++
Sbjct: 135 ELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 141 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIP 199
           LDL            F GL  LT+L L    +  L   +   L+ L  L L  N    +P
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 200 ESI-IRLSKLSSLLVSYCERLQSLP 223
             +   L++L  L +    +L+SLP
Sbjct: 100 LGVFDHLTQLDKLYLGG-NQLKSLP 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 110 CKLKSLEEICLTGS--AIEELPSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYL 165
                 E++ L G    IE++ + +  L A   L L       + SL     G+ +L  L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL----SGMENLRIL 75

Query: 166 YLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC--------E 217
            L    I ++     +  +LEEL++  N    +   I +L  L  L +S          +
Sbjct: 76  SLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 218 RLQSLPKL 225
           +L +L KL
Sbjct: 135 KLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 3   HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEI 62
              IE++  ++        + ++  N   K  +   +  +  L IL+L     +K +  +
Sbjct: 34  IPPIEKMDATLSTLKACKHLALS-TNNIEKISS---LSGMENLRILSLGRN-LIKKIENL 88

Query: 63  SS-AGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK--NLKTLPSSLCKLKSLEEIC 119
            + A  +E++ +    I  L S I  L  L  L + + K  N   +   L  L  LE++ 
Sbjct: 89  DAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLL 146

Query: 120 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSL 152
           L G+ +          S   +  +    +LK L
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 36/231 (15%), Positives = 77/231 (33%), Gaps = 25/231 (10%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKI-LLDGTAIEELPSSIGCLSRLLELN 95
           ++ ++   LV + +     L+ +    +A N+E+           +P     L    +L 
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 96  LGDCKNL--KTLPSSLCKLKSLEEICLTGSAI--EELPSPIECLSALCVLDLGDCKSLKS 151
                 +    +P        + ++ L  + +  E+  + I+    L VL+  +    + 
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 152 LKLPFDGLYSLTYLYLTDCA-ITELPESLGLLS------------SLEELYLERNN---- 194
           L++       L  L +   A    + +  GL+S             LE + +  ++    
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393

Query: 195 -FERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 244
             E I   +  L     +L+   ER+  LP    N        C  L   +
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFA 442

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 39/272 (14%), Positives = 81/272 (29%), Gaps = 30/272 (11%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKL-KSLPEI 62
            N+  L    +    +  +I      +       +  +L +L  ++          L  +
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 63  SSAG--NIEKILLDG------TAIEELPSSIGCLSRLLELNLGDCKN-------LKTLPS 107
           + A   ++E + LD         +  +     C  ++  L + +          L  L  
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSI--VTHC-RKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 108 SLCKLKSLEEICLTGSAI--EELPSPIECLSALCVLDLGDCK--SLKSLKLPFDGLYSLT 163
               L+ L       + I  ++L +      +L  + +GD +   L         L    
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249

Query: 164 YLYLTDC-AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER---- 218
              L +   + E   +L     L  L L       +P      +++  L + Y       
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 219 -LQSLPKLPCNLYWLDAQHCTTLESLSGLFSS 249
               + K P NL  L+ ++      L  L   
Sbjct: 310 HCTLIQKCP-NLEVLETRNVIGDRGLEVLAQY 340

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 41/221 (18%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPE----ISSAG---------NIEKILLDGT-----AI 78
            L Q+  +L  L +   +  + + +    +S  G          +E + +  +     ++
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 79  EELPSSIGCLSRLLELNLGDCKNLKTLP------SSLCKLKSLEEICL-------TGSAI 125
           E + + +  L     + L   + +  LP      S L   K L            T   +
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 126 EELPSPIECLSALCVLDLGDCK-SLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLL 182
             +         +  + LG    S + L     G  +L  L +  C  +E  +  ++  L
Sbjct: 456 SYIGQ---YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 183 SSLEELYLERNNFERIPESIIRLS----KLSSLLVSYCERL 219
            SL  L+++        + +++++     +  +       +
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 43/250 (17%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
           +    + E   +     ++     +       P L     ++  L+L             
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE------- 306

Query: 64  SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG- 122
                          E+  + I     L  L   +    + L       K L+ + +   
Sbjct: 307 --------------TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 123 SAIEELPSPIECLSALCVLDLGD-CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGL 181
           +  + +      +S   ++ L   C+ L+ +        ++    +T+ ++  +   L  
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYM--------AVYVSDITNESLESIGTYLKN 404

Query: 182 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCN-------LYWLDA 234
           L     + L+R        + + L      L+  C++L+               L ++  
Sbjct: 405 LCDFRLVLLDREE----RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-G 459

Query: 235 QHCTTLESLS 244
           Q+   +  + 
Sbjct: 460 QYSPNVRWML 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 37  SLIQHLNKLVILNLSGCSKL--KSLPEISSAG-NIEKILLDGTAIEE-----LPSSIGCL 88
            + +      +L LS C       L  I++   N++++ L  + +++     L       
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 89  SRLLELNLGDCKNLKT---LPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLG 144
           + L+ LN+    +  +   L   + +  +L+ + L  +  +E+L + ++    L  L  G
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 145 DCKS------LKSLKLPFDGLYSLTYL-YLTDCAITELPESLGLLSSLEELYLERNNF-- 195
              +         L +   G   L  L    D     LP    + S L  L L       
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 196 ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS 244
             + + + +  KL  L V        L  L        A  C  L  L 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--------ASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 39/228 (17%), Positives = 66/228 (28%), Gaps = 28/228 (12%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
             ++I+   K+  + L G              N+      G     + +     + L E+
Sbjct: 58  PATVIRRFPKVRSVELKGKPHFADF-------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 95  NLGDCK----NLKTLPSSLCKLKSLE---EICLTGSAIEELPSPIECLSALCVLDLGDCK 147
            L         L+ +  S    K L        +   +  +         L  LDL +  
Sbjct: 111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESD 167

Query: 148 ----SLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLS----SLEELYLERN-NFERI 198
               S   L    D   SL  L ++  A      +L  L     +L+ L L R    E++
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 199 PESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 246
              + R  +L  L                +   +    C  L  LSG 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVY--SGLSVALSGCKELRCLSGF 273

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 33/258 (12%), Positives = 69/258 (26%), Gaps = 45/258 (17%)

Query: 4   SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEIS 63
             +  +    + H     ++      +      ++      L  + L             
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV--------- 116

Query: 64  SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL--KTLPSSLCKLKSLEEICLT 121
                    +    +E +            L L  C+      L +     ++L+E+ L 
Sbjct: 117 ---------VTDDCLELIAK---SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 122 GSAIEEL-PSPIECLSALC----VLDLGDCKSL---KSLKLPFDGLYSLTYLYLTDCA-I 172
            S ++++    +            L++    S     +L+       +L  L L     +
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224

Query: 173 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWL 232
            +L   L     LEEL       E  P+         S L       + L  L      +
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVY-------SGLSVALSGCKELRCLSGFWDAV 277

Query: 233 D------AQHCTTLESLS 244
                     C+ L +L+
Sbjct: 278 PAYLPAVYSVCSRLTTLN 295

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 30/237 (12%)

Query: 9   LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAG-N 67
           L        +L  + ++   + +      L+    KL  L +    +   L  ++S   +
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339

Query: 68  IEKILLDGTAIEELPS----------SIGCLSRLLELNLGDCKN-----LKTLPSSLCKL 112
           + ++ +  +    +            S+      LE  L  C+      L T+  +   +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399

Query: 113 KSLEEICLTGSAIEELPSPI---------ECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 163
                  +   A + L             E    L  L L    + K  +        + 
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKME 459

Query: 164 YLYLTDCAITE--LPESLGLLSSLEELYLERNNF--ERIPESIIRLSKLSSLLVSYC 216
            L +     ++  +   L    SL +L +    F  + +  +  +L  + SL +S C
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 27  CNIFTKTPNPSLIQHLNKLVILNLSGCSK----LKSLPEISSAGNIEKI-LLDGTAIEEL 81
                    P++    ++L  LNLS  +     L  L  +     ++++ +LD      L
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL--LCQCPKLQRLWVLDYIEDAGL 330

Query: 82  PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 141
                    L EL +   +     P+     + L  + +    +E +      ++   ++
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390

Query: 142 DLGD-CKSLKSLKLPFDGLYSLTYLY--LTDCAITELPESLGLLSSLEELYLERNNFERI 198
            +     ++   +L      +  YL     D     + E       L  L L     +++
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH---CKDLRRLSLSGLLTDKV 447

Query: 199 PESIIRLSK-LSSLLVSYCE-RLQSLPKLPCNLYWLDAQHCTTLESLS 244
            E I   +K +  L V++       +  +           C +L  L 
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHV--------LSGCDSLRKLE 487

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 40/180 (22%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
            L+  L +  ++ L  C        ++ A             +++ S++     L ELNL
Sbjct: 22  ELLPLLQQCQVVRLDDCG-------LTEAR-----------CKDISSALRVNPALAELNL 63

Query: 97  GD-----------CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD 145
                         + L+T    + KL SL+  CLTG+    L S +  L  L  L L D
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKL-SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 146 CK-SLKSLKLPFDGL----YSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF 195
                  L+L  +GL      L  L L  C+++      L   L      +EL +  N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 41/219 (18%)

Query: 37  SLIQHLNKLVILNLSGCS-KLKSLPEISSAG-----NIEKILLDGTAI-----EELPSSI 85
           S ++ L  L  L+LS        L  +          +EK+ L+  ++     E L S +
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 86  GCLSRLLELNLGDC-------KNL-KTLPSSLCKLKSL--EEICLTGSAIEELPSPIECL 135
                  EL + +        + L + L  S C+L++L  E   +T     +L   +   
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 136 SALCVLDLGDCK----SLKSL-KLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSL 185
           ++L  L LG  K     +  L          L  L++ +C IT      L   L    SL
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 186 EELYLERNNFERIPESIIRLS--------KLSSLLVSYC 216
           +EL L  N      E    L         +L SL V  C
Sbjct: 287 KELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 44/183 (24%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
            L+   ++L  L +  C        I++ G             +L   +     L EL+L
Sbjct: 250 GLLHPSSRLRTLWIWECG-------ITAKG-----------CGDLCRVLRAKESLKELSL 291

Query: 97  GD-------CKNL-KTLPSSLCKLKSL--EEICLTGSAIEELPSPIECLSALCVLDLGD- 145
                     + L +TL    C+L+SL  +    T +      S +     L  L + + 
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 146 ------CKSL-KSLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERN 193
                  + L + L  P      L  L+L DC +++     L  +L    SL EL L  N
Sbjct: 352 RLEDAGVRELCQGLGQP---GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 194 NFE 196
              
Sbjct: 409 CLG 411

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 140 VLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERI 198
            LDL            FD L SLT LYL    +  LP  +   L+SL  L L  N  + +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 199 PESII-RLSKLSSLLVSYCERLQSLPK 224
           P  +  +L++L  L +    +LQSLP 
Sbjct: 92  PNGVFDKLTQLKELAL-NTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 15/138 (10%)

Query: 82  PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCV 140
           P+ I   +  L+L     K+L        +L SL ++ L G+ ++ LP+ +   L++L  
Sbjct: 23  PTGIPAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 141 LDLGDCKSLKSLKLP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNN 194
           L+L   + L+SL  P   FD L  L  L L    +  LP+  G+   L+ L++L L +N 
Sbjct: 81  LNLSTNQ-LQSL--PNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQ 135

Query: 195 FERIPESII-RLSKLSSL 211
            + +P+ +  RL+ L  +
Sbjct: 136 LKSVPDGVFDRLTSLQYI 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 93  ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDCKSLKS 151
            L L D +  K  P     L +L+E+ L  + +  LP  + + L+ L VLDLG  + L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV 102

Query: 152 LKLP---FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESII-RLSK 207
           L  P   FD L  L  L++    +TELP  +  L+ L  L L++N  + IP     RLS 
Sbjct: 103 L--PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 208 LSSL 211
           L+  
Sbjct: 161 LTHA 164

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 29/148 (19%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP 155
            C  K LK LP  +   + + E+ L G+    +P  +     L ++DL + + + +L   
Sbjct: 16  RCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTL--S 70

Query: 156 ---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLSKL 208
              F  +  L  L L+   +  +P        L SL  L L  N+   +PE     LS L
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 209 SSLLVS----YCERLQSLPKLPCNLYWL 232
           S L +     YC+         CN+ WL
Sbjct: 129 SHLAIGANPLYCD---------CNMQWL 147

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 57/223 (25%)

Query: 3   HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEI 62
             ++E    S    G++   I  A  +  +      +    KL  + LS  +        
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQA-----LLKCPKLHTVRLSDNA-------F 106

Query: 63  SSAG--NIEKILLDGTAIEEL--------PSSIGCLSRLLELNLGDCKNLKTLPSSLCKL 112
                  +   L   T +E L        P +   ++R L+           +       
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------AVNKKAKNA 158

Query: 113 KSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY------------ 160
             L  I    + +E        +           + L ++K+  +G+             
Sbjct: 159 PPLRSIICGRNRLEN-----GSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 161 ----SLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNN 194
                L  L L D   T      L  +L    +L EL L    
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 35/225 (15%), Positives = 62/225 (27%), Gaps = 68/225 (30%)

Query: 37  SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 96
           +++   + +  + LSG +       I +                L  +I     L     
Sbjct: 26  AVLLEDDSVKEIVLSGNT-------IGTEA-----------ARWLSENIASKKDLEIAEF 67

Query: 97  GDC----------KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 146
            D           + L+ L  +L K   L  + L+ +A             L    L   
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-----TAQEPLIDF-LSKH 121

Query: 147 KSLKSLKLPFDGL------------------------YSLTYLYLTDCAITE-----LPE 177
             L+ L L  +GL                          L  +      +         +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 178 SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
           +      L  + + +N     PE I  L  L   L +YC+ L+ L
Sbjct: 182 TFQSHRLLHTVKMVQNGIR--PEGIEHL--LLEGL-AYCQELKVL 221

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 98  DC--KNLKTLPSSLCKLKSLEEICLTGSAIEELPSP--IECLSALCVLDLGDCKSLKSLK 153
           DC  + LK +P  +       E+ L  + +  + S      L  L  L+L   + L  + 
Sbjct: 14  DCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGI- 69

Query: 154 LP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RLS 206
                F+G   +  L L +  I E+     +   L  L+ L L  N    +       L+
Sbjct: 70  -EPNAFEGASHIQELQLGENKIKEISN--KMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 207 KLSSL 211
            L+SL
Sbjct: 127 SLTSL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 153 KLP---FDGLYSLTYLYLTDCAITELPESLGL---LSSLEELYLERNNFERIPESII-RL 205
            LP   FD L  LT L L+   I  LP+  G+   L+ L  LYL  N  + +P  +  +L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKLTKLTILYLHENKLQSLPNGVFDKL 99

Query: 206 SKLSSLLVSYCERLQSLPK 224
           ++L  L +    +L+S+P 
Sbjct: 100 TQLKELALDT-NQLKSVPD 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.95
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.57
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.11

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1e-24  Score=215.26  Aligned_cols=207  Identities=26%  Similarity=0.402  Sum_probs=184.2

Q ss_pred             CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891           15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   93 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   93 (475)
                      ..++++.|+|+++ .++.+|.  .+.++++|++|+|++|. +..+|. ++.+++|++|+|++|.++.+|..++++++|++
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~--~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPD--QAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCS--CGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCC-CchhcCh--hhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence            3588999999996 4667775  47779999999999964 558887 88999999999999999999999999999999


Q ss_pred             EeeeCCCCCCccccccCC---------CCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCE
Q 011891           94 LNLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY  164 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~  164 (475)
                      |++++|..++.+|..+..         +++|++|++++|.++.+|..+..+++|++|++++|.. ..+|..+..+++|+.
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCE
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCE
Confidence            999999999999987764         9999999999999999999999999999999999874 457777889999999


Q ss_pred             EEecCCCCCC-cchhhCCCCCCceeEeccCCc-cccchHHhhcCCcccccccccccccccCCCc
Q 011891          165 LYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYCERLQSLPKLP  226 (475)
Q Consensus       165 L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l-~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~  226 (475)
                      |++++|++.+ +|..++.+++|+.|+|++|++ ..+|..+..+++|+.|+|++|+.++.+|...
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            9999998776 888899999999999999876 5888889999999999999999999888643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=4.2e-25  Score=216.57  Aligned_cols=238  Identities=18%  Similarity=0.247  Sum_probs=184.1

Q ss_pred             CCCCcc---cccccccCCCCCcEEeccCCCCcc-CCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEcccc
Q 011891            2 PHSNIE---QLSESVQHHGKLNQIIMAACNIFT-KTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT   76 (475)
Q Consensus         2 ~~s~l~---~L~~~~~~l~~L~~L~Ls~~~~l~-~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~   76 (475)
                      +++++.   .++..+..+++|++|+|+++..+. .+|  ..+.++++|++|+|++|...+.+|. +..+++|++|++++|
T Consensus        58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP--PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC--GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC--hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence            345565   477788888888888888533343 455  3577888888888888655446776 778888888888888


Q ss_pred             CCc-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCC-CCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccc
Q 011891           77 AIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK-SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLK  153 (475)
Q Consensus        77 ~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~  153 (475)
                      .+. .+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.++ .+|..+..++ |+.|++++|......|
T Consensus       136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            887 6777888888888888888766557888888887 8888888888887 6777777776 8888888887665667


Q ss_pred             cCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC--ccCcc
Q 011891          154 LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLY  230 (475)
Q Consensus       154 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~  230 (475)
                      ..+..+++|+.|++++|.++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+....+|..  .++|+
T Consensus       215 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~  294 (313)
T 1ogq_A          215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD  294 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSC
T ss_pred             HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccC
Confidence            7778888899999999988875556788889999999999987 78888888999999999988766677764  35677


Q ss_pred             eecccccccCcc
Q 011891          231 WLDAQHCTTLES  242 (475)
Q Consensus       231 ~L~i~~c~~L~~  242 (475)
                      .+++.+++.+..
T Consensus       295 ~l~l~~N~~lc~  306 (313)
T 1ogq_A          295 VSAYANNKCLCG  306 (313)
T ss_dssp             GGGTCSSSEEES
T ss_pred             hHHhcCCCCccC
Confidence            777777665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.1e-24  Score=211.78  Aligned_cols=211  Identities=26%  Similarity=0.418  Sum_probs=189.3

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccC-C
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTA-I   78 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~-i   78 (475)
                      |++++++.+|..+..+++|++|+|++|. ++.+|.  .++++++|++|+|++| .+..+|. ++.+++|++|++++|. +
T Consensus        88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~--~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           88 LRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPD--TMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             EESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCS--CGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred             ccCCCchhcChhhhhCCCCCEEECCCCC-ccchhH--HHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCc
Confidence            3578899999999999999999999975 557774  5788999999999996 5668887 8899999999999975 4


Q ss_pred             cccCcccCC---------CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC
Q 011891           79 EELPSSIGC---------LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL  149 (475)
Q Consensus        79 ~~lp~~i~~---------l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l  149 (475)
                      ..+|..+..         +++|++|++++|. ++.+|..++.+++|++|++++|.++.+|..+..+++|++|++++|...
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence            578877654         9999999999974 559999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCc-cccchHHhhcCCccccccccc
Q 011891          150 KSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       150 ~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l-~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      ..+|..+.++++|+.|++++|++.+ +|..++.+++|+.|+|++|++ ..+|..+.++++|+.+++..+
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999999999999999999998776 898999999999999999886 589999999999999988864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=6.6e-23  Score=206.98  Aligned_cols=250  Identities=13%  Similarity=0.140  Sum_probs=179.3

Q ss_pred             CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCC
Q 011891            2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i   78 (475)
                      .++.++.+|.. +..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..++ . ++.+++|++|++++|.+
T Consensus        53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  129 (390)
T 3o6n_A           53 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL  129 (390)
T ss_dssp             ESCEESEECTHHHHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCchhhCChhHhcccccCcEEECCCCc-ccccCh-hhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCcc
Confidence            35667777765 5778889999998864 455443 356788888888888864 55554 3 67888888899888888


Q ss_pred             cccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCC---------------------
Q 011891           79 EELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS---------------------  136 (475)
Q Consensus        79 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~---------------------  136 (475)
                      +.+|.. +.++++|++|++++|......|..+..+++|++|++++|.++.++.  ..++                     
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~L  207 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAV  207 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEEECCSSC
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccccCCCCcc
Confidence            888876 4788888888888876554455667888888888888888775532  2222                     


Q ss_pred             -------------------CcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcc
Q 011891          137 -------------------ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       137 -------------------~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~  196 (475)
                                         +|+.|++++|... .. ..+..+++|+.|++++|.++++ |..+..+++|+.|++++|+++
T Consensus       208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          208 EELDASHNSINVVRGPVNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             SEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             eEEECCCCeeeeccccccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence                               3444444444322 12 2346788999999999999984 778899999999999999999


Q ss_pred             ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891          197 RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF  261 (475)
Q Consensus       197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~  261 (475)
                      .+|..+..+++|+.|++++| .++.+|..   .++|+.|+++++. ++.++.. .......+.+.++.
T Consensus       286 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          286 ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHND  350 (390)
T ss_dssp             EEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSC
T ss_pred             ccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCCC
Confidence            88877788999999999998 45566542   3688999998875 5555432 12234556665553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=2e-23  Score=228.97  Aligned_cols=241  Identities=19%  Similarity=0.256  Sum_probs=197.5

Q ss_pred             CCCCcc-cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIE-QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~-~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      .+|++. .++..+..+++|++|+|++|.....+|  ..+.++++|++|++++|...+.+|. +..+++|++|++++|.+.
T Consensus       402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence            345555 567788889999999999876544555  3678889999999999876667777 788999999999999988


Q ss_pred             -ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCcccc---
Q 011891           80 -ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKL---  154 (475)
Q Consensus        80 -~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~---  154 (475)
                       .+|..++++++|++|++++|.....+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.....+|.   
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence             67888999999999999998877789999999999999999999998 7888899999999999998865433332   


Q ss_pred             -------------------------------------------------------------------CCCCCCCCCEEEe
Q 011891          155 -------------------------------------------------------------------PFDGLYSLTYLYL  167 (475)
Q Consensus       155 -------------------------------------------------------------------~~~~l~~L~~L~L  167 (475)
                                                                                         .+..+++|+.|+|
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence                                                                               2334677899999


Q ss_pred             cCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCcc
Q 011891          168 TDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLES  242 (475)
Q Consensus       168 ~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~  242 (475)
                      ++|++++ +|..++.+++|+.|+|++|+++ .+|..++.+++|+.|++++|+....+|..   ..+|+.|+++++.--..
T Consensus       640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            9999986 8999999999999999999997 88999999999999999999877788864   35688888888754334


Q ss_pred             cc
Q 011891          243 LS  244 (475)
Q Consensus       243 l~  244 (475)
                      +|
T Consensus       720 iP  721 (768)
T 3rgz_A          720 IP  721 (768)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=2.1e-22  Score=199.75  Aligned_cols=246  Identities=19%  Similarity=0.316  Sum_probs=199.3

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +.+++++.++ ++..+++|++|++++| .++.++.   +.++++|++|++++| .+..+|.+..+++|++|++++|.+..
T Consensus        51 l~~~~i~~~~-~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~  124 (347)
T 4fmz_A           51 VAGEKVASIQ-GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISD  124 (347)
T ss_dssp             CCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCC
T ss_pred             EeCCccccch-hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccC
Confidence            3567777775 5888999999999997 5566653   778899999999996 67778889999999999999999998


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  160 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~  160 (475)
                      ++. +..+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++. +..++
T Consensus       125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~  199 (347)
T 4fmz_A          125 ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLT  199 (347)
T ss_dssp             CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCT
T ss_pred             chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCC
Confidence            877 88999999999999987777765 8899999999999999988776 78899999999999874 44443 67888


Q ss_pred             CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcceecccccc
Q 011891          161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT  238 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~i~~c~  238 (475)
                      +|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++| .++.++.+  +++|+.|++++| 
T Consensus       200 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-  275 (347)
T 4fmz_A          200 SLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-  275 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-
T ss_pred             ccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-
Confidence            99999999999998765 7888999999999999988886 888999999999988 45555533  478999999887 


Q ss_pred             cCccccCCCCCcceeEEEecCCc
Q 011891          239 TLESLSGLFSSYKCVFFYLNENF  261 (475)
Q Consensus       239 ~L~~l~~~~~~~~~~~l~~~~c~  261 (475)
                      .++.++..........+.+.+|.
T Consensus       276 ~l~~~~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          276 QISDISVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             ccCCChhhcCCCCCCEEECcCCc
Confidence            45555432222345667777774

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=5.7e-23  Score=225.33  Aligned_cols=238  Identities=20%  Similarity=0.249  Sum_probs=206.3

Q ss_pred             CCCCCcc-cccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC
Q 011891            1 MPHSNIE-QLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         1 l~~s~l~-~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i   78 (475)
                      |++|++. .+|..+..+++|+.|++++|.....+|.  .+..+++|++|++++|...+.+|. +..+++|++|++++|.+
T Consensus       425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  502 (768)
T 3rgz_A          425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL  502 (768)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence            4567776 5678899999999999999876656664  678899999999999877777887 88999999999999999


Q ss_pred             c-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcc-------------------------
Q 011891           79 E-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSP-------------------------  131 (475)
Q Consensus        79 ~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~-------------------------  131 (475)
                      . .+|..++.+++|++|++++|.....+|..++.+++|+.|++++|.+. .+|..                         
T Consensus       503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            8 78999999999999999999888899999999999999999998776 44432                         


Q ss_pred             ---------------------------------------------cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEE
Q 011891          132 ---------------------------------------------IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLY  166 (475)
Q Consensus       132 ---------------------------------------------i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~  166 (475)
                                                                   +..+++|+.|++++|...+.+|..++++++|+.|+
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence                                                         34467899999999998889999999999999999


Q ss_pred             ecCCCCCC-cchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC--ccCcceecccccccC
Q 011891          167 LTDCAITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTL  240 (475)
Q Consensus       167 L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~i~~c~~L  240 (475)
                      |++|++++ +|..++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|+....+|..  +.++....+.+++.|
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L  740 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL  740 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence            99999996 9999999999999999999997 89999999999999999999888888864  345555556666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.6e-22  Score=215.53  Aligned_cols=250  Identities=13%  Similarity=0.142  Sum_probs=174.9

Q ss_pred             CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCC
Q 011891            2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i   78 (475)
                      .++.+..+|.. +..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+|.  ++.+++|++|+|++|.+
T Consensus        59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  135 (597)
T 3oja_B           59 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL  135 (597)
T ss_dssp             SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCCh-HHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence            45566677754 5678888999988864 455443 356788888888888864 555554  67888888899888888


Q ss_pred             cccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCC--------------------
Q 011891           79 EELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA--------------------  137 (475)
Q Consensus        79 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~--------------------  137 (475)
                      +.+|.. ++++++|++|++++|......|..++.+++|++|++++|.++.++.  ..+++                    
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L  213 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAV  213 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTC
T ss_pred             CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchh
Confidence            888776 4788888888888876655556678888888888888888776542  22222                    


Q ss_pred             --------------------cCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCcc
Q 011891          138 --------------------LCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       138 --------------------L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                                          |+.|++++|....  +..+..+++|+.|+|++|.+++ .|..++.+++|+.|+|++|.++
T Consensus       214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          214 EELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             SEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             heeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence                                3333333333211  1234677889999999998888 4778888899999999999988


Q ss_pred             ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891          197 RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF  261 (475)
Q Consensus       197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~  261 (475)
                      .+|..+..+++|+.|++++|. +..+|..   .++|+.|++++|. +..++.. .......+.+.++.
T Consensus       292 ~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~L~~L~l~~N~  356 (597)
T 3oja_B          292 ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHND  356 (597)
T ss_dssp             EEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSC
T ss_pred             CCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcChh-hcCCCCEEEeeCCC
Confidence            888777778899999998884 4456542   3678888888864 4444421 11233456665553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.7e-23  Score=203.72  Aligned_cols=226  Identities=17%  Similarity=0.230  Sum_probs=194.3

Q ss_pred             cccccCC-----CCCcEEeccCCCCcc--CCCChhhccCCCCCcEEEEeC-CCCCCCCcC-cCCCCCCcEEEccccCCc-
Q 011891           10 SESVQHH-----GKLNQIIMAACNIFT--KTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-ISSAGNIEKILLDGTAIE-   79 (475)
Q Consensus        10 ~~~~~~l-----~~L~~L~Ls~~~~l~--~~p~~~~~~~l~~L~~L~L~~-c~~l~~~p~-i~~l~~L~~L~L~~~~i~-   79 (475)
                      |.|+..-     .+++.|+|+++..-.  .+|  ..+.++++|++|++++ +...+.+|. ++.+++|++|++++|.+. 
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~--~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  115 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECC--GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccC--hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence            6666432     689999999976544  466  4688999999999996 555557786 889999999999999998 


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCC-CcCEEEcCCCCCCCccccCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLS-ALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      .+|..+.++++|++|++++|.....+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.....+|..+.
T Consensus       116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            78999999999999999998877789999999999999999999999 8999999998 999999999987667787777


Q ss_pred             CCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceec
Q 011891          158 GLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLD  233 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~  233 (475)
                      .+. |+.|++++|.+++ .|..+..+++|+.|++++|.++..+..+..+++|++|++++|.....+|..   .++|+.|+
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence            777 9999999999986 778899999999999999999866666888999999999999766577753   36788888


Q ss_pred             ccccc
Q 011891          234 AQHCT  238 (475)
Q Consensus       234 i~~c~  238 (475)
                      ++++.
T Consensus       275 Ls~N~  279 (313)
T 1ogq_A          275 VSFNN  279 (313)
T ss_dssp             CCSSE
T ss_pred             CcCCc
Confidence            88764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.4e-22  Score=217.58  Aligned_cols=254  Identities=17%  Similarity=0.176  Sum_probs=185.4

Q ss_pred             CCCCCcccccc--cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCC-CcEEEcccc
Q 011891            1 MPHSNIEQLSE--SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGN-IEKILLDGT   76 (475)
Q Consensus         1 l~~s~l~~L~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~-L~~L~L~~~   76 (475)
                      |++|++..+|.  .++.+++|++|++++|..-..+|   .+.++++|++|++++| .+..+|. +..+++ |++|++++|
T Consensus       312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS
T ss_pred             CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC
Confidence            34566666666  66677777777777654333555   3556666777777764 3446665 666777 888888888


Q ss_pred             CCcccCcccCCCC--CCcEEeeeCCCCCCccccccC-------CCCCCcEEEeeCcCCccCCccc-CCCCCcCEEEcCCC
Q 011891           77 AIEELPSSIGCLS--RLLELNLGDCKNLKTLPSSLC-------KLKSLEEICLTGSAIEELPSPI-ECLSALCVLDLGDC  146 (475)
Q Consensus        77 ~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~l~-------~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~c  146 (475)
                      .++.+|..+..+.  +|++|++++|.....+|..+.       .+++|++|++++|.++.+|..+ ..+++|+.|++++|
T Consensus       388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            7777777666544  788888888776666776666       6778888888888888888764 45888999999988


Q ss_pred             CCCCccccCCCC--------CCCCCEEEecCCCCCCcchhhC--CCCCCceeEeccCCccccchHHhhcCCcccccccc-
Q 011891          147 KSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY-  215 (475)
Q Consensus       147 ~~l~~l~~~~~~--------l~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~-  215 (475)
                      ... .+|.....        +++|+.|+|++|+++++|..+.  .+++|+.|+|++|+++.+|..+..+++|+.|++++ 
T Consensus       468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred             CCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence            744 66654322        2389999999999999998887  89999999999999998999999999999999955 


Q ss_pred             -----cccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891          216 -----CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF  261 (475)
Q Consensus       216 -----c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~  261 (475)
                           |...+.+|..   .++|+.|++++|. ++.++.... .....+.+.++.
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~  598 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP  598 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCCC
Confidence                 4445566642   4678999998875 477776433 445667776664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=1.9e-22  Score=196.71  Aligned_cols=231  Identities=21%  Similarity=0.279  Sum_probs=186.3

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC---cC-cCCCCCCcEEEccccC
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~---p~-i~~l~~L~~L~L~~~~   77 (475)
                      .+++++.+|.++.  ++|++|+|++|. ++.+|. ..+.++++|++|+|++| .+..+   |. +..+++|++|++++|.
T Consensus        15 ~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           15 NSKGLTSVPTGIP--SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             CSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CCCCcccCCCCCC--CCCCEEECCCCc-cCccCH-hHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc
Confidence            4567888887654  789999999964 667765 34678999999999996 45444   23 5578999999999999


Q ss_pred             CcccCcccCCCCCCcEEeeeCCCCCCccc--cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCC-ccc
Q 011891           78 IEELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLK-SLK  153 (475)
Q Consensus        78 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~-~l~  153 (475)
                      +..+|..+..+++|++|++++|. +..++  ..+..+++|++|++++|.+... +..+..+++|++|++++|.... .+|
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            99999889999999999999965 44444  4688899999999999998854 5568889999999999987554 467


Q ss_pred             cCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccccccccC----CCcc
Q 011891          154 LPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLP----KLPC  227 (475)
Q Consensus       154 ~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp----~l~~  227 (475)
                      ..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++|......|    .+|+
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence            7788999999999999999985 6788899999999999999987764 67889999999999996544433    2456


Q ss_pred             Ccceecccccc
Q 011891          228 NLYWLDAQHCT  238 (475)
Q Consensus       228 ~L~~L~i~~c~  238 (475)
                      +|+.|++++++
T Consensus       249 ~L~~L~L~~N~  259 (306)
T 2z66_A          249 SLAFLNLTQND  259 (306)
T ss_dssp             TCCEEECTTCC
T ss_pred             cCCEEEccCCC
Confidence            77788777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.2e-22  Score=221.22  Aligned_cols=234  Identities=20%  Similarity=0.261  Sum_probs=169.7

Q ss_pred             CCcccccccccCCCCCcEEeccCCCCccC------------------CCChhhcc--CCCCCcEEEEeCCCCCCCCcC-c
Q 011891            4 SNIEQLSESVQHHGKLNQIIMAACNIFTK------------------TPNPSLIQ--HLNKLVILNLSGCSKLKSLPE-I   62 (475)
Q Consensus         4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~------------------~p~~~~~~--~l~~L~~L~L~~c~~l~~~p~-i   62 (475)
                      |++..+|.++.++++|++|+|++|. ++.                  +|.  .++  ++++|++|+|++|...+.+|. +
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccChHHH
Confidence            5677788899999999999999976 454                  665  455  899999999999888888887 8


Q ss_pred             CCCCCCcEEEccccC-Ccc--cCcccCCCC-------CCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCcCCccCCc
Q 011891           63 SSAGNIEKILLDGTA-IEE--LPSSIGCLS-------RLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEELPS  130 (475)
Q Consensus        63 ~~l~~L~~L~L~~~~-i~~--lp~~i~~l~-------~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~lp~  130 (475)
                      +.+++|++|+|++|. ++.  +|..+++++       +|++|++++|... .+|.  .++++++|+.|++++|.++.+| 
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-
Confidence            888999999999887 774  776665554       8888888886544 8887  7888888888888888888887 


Q ss_pred             ccCCCCCcCEEEcCCCCCCCccccCCCCCCC-CCEEEecCCCCCCcchhhCCCC--------------------------
Q 011891          131 PIECLSALCVLDLGDCKSLKSLKLPFDGLYS-LTYLYLTDCAITELPESLGLLS--------------------------  183 (475)
Q Consensus       131 ~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~-L~~L~L~~~~l~~lp~~l~~l~--------------------------  183 (475)
                      .+..+++|+.|++++|... .+|..+.++++ |+.|+|++|.++.+|..+..++                          
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            7788888888888887744 67766777777 8888888887777665544332                          


Q ss_pred             -----CCceeEeccCCccccchHHh-hcCCcccccccccccccccCCC-c----------cCcceecccccccCccccC
Q 011891          184 -----SLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPKL-P----------CNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       184 -----~L~~L~L~~n~l~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~l-~----------~~L~~L~i~~c~~L~~l~~  245 (475)
                           +|+.|++++|+++.+|..+. .+++|+.|++++| .+..+|.. .          ++|+.|++++| .++.++.
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~  745 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD  745 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH
Confidence                 45556666666665665443 5667777777666 34455531 1          15666777665 4545544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=6.5e-22  Score=203.53  Aligned_cols=259  Identities=21%  Similarity=0.171  Sum_probs=183.7

Q ss_pred             CCCCCcccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCC
Q 011891            1 MPHSNIEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         1 l~~s~l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i   78 (475)
                      |++|+|+.+ +..+..+++|++|+|++|.....++. ..+.++++|++|+|++|......|. ++.+++|++|++++|.+
T Consensus        37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (455)
T 3v47_A           37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL  115 (455)
T ss_dssp             CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ecCCccCcCChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence            467778777 56788888888888888765444433 3567788888888888654434454 77888888888888888


Q ss_pred             cc-cCcc--cCCCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEeeCcCCccCCc-ccC--------------------
Q 011891           79 EE-LPSS--IGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIE--------------------  133 (475)
Q Consensus        79 ~~-lp~~--i~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~--------------------  133 (475)
                      +. ++..  +..+++|++|++++|......|.. +.++++|++|++++|.++.++. .+.                    
T Consensus       116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~  195 (455)
T 3v47_A          116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM  195 (455)
T ss_dssp             BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred             CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence            74 3433  778888888888887655555654 6788888888888887764422 221                    


Q ss_pred             --------------CCCCcCEEEcCCCC----------------------------------------------------
Q 011891          134 --------------CLSALCVLDLGDCK----------------------------------------------------  147 (475)
Q Consensus       134 --------------~l~~L~~L~L~~c~----------------------------------------------------  147 (475)
                                    .+++|+.|++++|.                                                    
T Consensus       196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred             chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence                          22445555555553                                                    


Q ss_pred             -----------CCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccc
Q 011891          148 -----------SLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVS  214 (475)
Q Consensus       148 -----------~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~  214 (475)
                                 .....|..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.++.+ |..+..+++|+.|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence                       2222344567889999999999999985 66889999999999999999876 5678999999999999


Q ss_pred             ccccccccCC---CccCcceecccccccCccccCCCC-C-cceeEEEecCCc
Q 011891          215 YCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLFS-S-YKCVFFYLNENF  261 (475)
Q Consensus       215 ~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~~~~-~-~~~~~l~~~~c~  261 (475)
                      +|......|.   -.++|+.|+++++ .++.++.... . .....+.+.++.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            9964433343   2478999999886 5666655321 1 234556665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=1.5e-21  Score=192.45  Aligned_cols=233  Identities=18%  Similarity=0.215  Sum_probs=169.6

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~   80 (475)
                      +++.++.+|..+.  ++|++|+|++|. ++.++. ..+.++++|++|+|++|......|. +..+++|++|++++|.++.
T Consensus        39 ~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (330)
T 1xku_A           39 SDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE  114 (330)
T ss_dssp             TTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             cCCCccccCccCC--CCCeEEECCCCc-CCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc
Confidence            4566777776553  688889998864 555553 3467888899999988644333355 7788899999999888888


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      +|..+.  ++|++|++++|......+..+..+++|++|++++|.++   ..+..+..+++|+.|++++|. +..+|... 
T Consensus       115 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~-  190 (330)
T 1xku_A          115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL-  190 (330)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC-
T ss_pred             cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc-
Confidence            887664  78888888887654444556788888888888888876   345667788888888888876 44455443 


Q ss_pred             CCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCccee
Q 011891          158 GLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWL  232 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L  232 (475)
                       .++|+.|++++|.++++ |..+..+++|+.|++++|.++.++ ..+..+++|+.|++++| .++.+|..   .++|+.|
T Consensus       191 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L  268 (330)
T 1xku_A          191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV  268 (330)
T ss_dssp             -CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred             -cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence             26788888888888874 567788888888888888887665 36778888888888887 45566642   3667888


Q ss_pred             cccccccCccccC
Q 011891          233 DAQHCTTLESLSG  245 (475)
Q Consensus       233 ~i~~c~~L~~l~~  245 (475)
                      +++++ .++.++.
T Consensus       269 ~l~~N-~i~~~~~  280 (330)
T 1xku_A          269 YLHNN-NISAIGS  280 (330)
T ss_dssp             ECCSS-CCCCCCT
T ss_pred             ECCCC-cCCccCh
Confidence            88775 3555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=7.9e-22  Score=202.38  Aligned_cols=228  Identities=20%  Similarity=0.299  Sum_probs=178.4

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~   79 (475)
                      .+.+++.+|.++.  ++++.|+|++|. ++.++. ..+.++++|++|+|++| .+..++.  +..+++|++|+|++|.++
T Consensus        51 ~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           51 VRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKV-NSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CSCCCSSCCSCCC--TTCSEEECCSCC-CCEECT-TTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             CCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCH-HHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCC
Confidence            3567888887764  789999999864 555543 45788999999999996 4566553  778999999999999999


Q ss_pred             ccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC
Q 011891           80 ELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF  156 (475)
Q Consensus        80 ~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~  156 (475)
                      .++. .+..+++|++|+|++|......+..+..+++|++|++++ +.+..++. .+..+++|+.|++++|. +..+| .+
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~  203 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NL  203 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CC
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-cc
Confidence            8876 588899999999999764433344678899999999998 45666665 57889999999999986 55666 46


Q ss_pred             CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC-C---ccCcc
Q 011891          157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLY  230 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-l---~~~L~  230 (475)
                      ..+++|+.|+|++|.++++ |..+..+++|+.|++++|+++.++ ..+..+++|+.|+|++| .++.+|. .   .++|+
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCC
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCC
Confidence            7889999999999999985 778889999999999999998664 56788999999999998 4555553 1   24556


Q ss_pred             eeccccc
Q 011891          231 WLDAQHC  237 (475)
Q Consensus       231 ~L~i~~c  237 (475)
                      .|+++++
T Consensus       283 ~L~L~~N  289 (440)
T 3zyj_A          283 RIHLHHN  289 (440)
T ss_dssp             EEECCSS
T ss_pred             EEEcCCC
Confidence            6665553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.7e-21  Score=200.81  Aligned_cols=227  Identities=18%  Similarity=0.203  Sum_probs=131.7

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +++++++.++ ++..+++|++|+|++|. ++.+|    ++++++|++|++++|. +..+| ++.+++|++|++++|.++.
T Consensus        49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           49 CHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             CCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCCcCCe
Confidence            3456666664 56666777777776653 44443    3455555555555532 33333 4444555555555554444


Q ss_pred             cCc-------------------ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891           81 LPS-------------------SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  141 (475)
Q Consensus        81 lp~-------------------~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  141 (475)
                      ++-                   .++.+++|++|++++|..++.+  .++.+++|++|++++|.++.+|  +..+++|+.|
T Consensus       121 l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L  196 (457)
T 3bz5_A          121 LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL  196 (457)
T ss_dssp             CCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE
T ss_pred             ecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEE
Confidence            430                   1444555555555555444444  3566777777777777777766  6677778888


Q ss_pred             EcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch-HHhhcC-------Ccccccc
Q 011891          142 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-SIIRLS-------KLSSLLV  213 (475)
Q Consensus       142 ~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-------~L~~L~l  213 (475)
                      ++++|.. ..+  .+..+++|+.|++++|+++++|  ++.+++|+.|++++|+++.+|. .+..+.       +|+.|++
T Consensus       197 ~l~~N~l-~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l  271 (457)
T 3bz5_A          197 NCDTNNI-TKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL  271 (457)
T ss_dssp             ECCSSCC-SCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred             ECcCCcC-Cee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence            8777763 333  3567788888888888888876  6778888888888888776551 222221       3344455


Q ss_pred             cccccccccCC-CccCcceecccccccCcccc
Q 011891          214 SYCERLQSLPK-LPCNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       214 ~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~  244 (475)
                      ++|..+..+|. ..++|+.|++++|..++.++
T Consensus       272 ~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          272 THNTQLIYFQAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             TTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCCccCCcccccccccCCEEECCCCcccceec
Confidence            55544444432 12455555555555444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=7.7e-23  Score=219.57  Aligned_cols=246  Identities=19%  Similarity=0.199  Sum_probs=205.4

Q ss_pred             cccccc--CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC--CCcC-cCCC------CCCcEEEccccC
Q 011891            9 LSESVQ--HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK--SLPE-ISSA------GNIEKILLDGTA   77 (475)
Q Consensus         9 L~~~~~--~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~--~~p~-i~~l------~~L~~L~L~~~~   77 (475)
                      +|+.+.  ++++|++|+|++|.....+|.  .++++++|++|++++|..+.  .+|. ++.+      ++|++|++++|.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            899988  999999999999988888884  68899999999999987455  4776 6555      999999999999


Q ss_pred             CcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCC-cCEEEcCCCCCCCcccc
Q 011891           78 IEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSA-LCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~l~~  154 (475)
                      ++.+|.  .++++++|++|++++|.....+| .++.+++|++|++++|.++.+|..+..+++ |++|++++|... .+|.
T Consensus       317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            999999  99999999999999987666899 889999999999999999999999999999 999999999844 7887


Q ss_pred             CCCCCC--CCCEEEecCCCCCC-cchhhC-------CCCCCceeEeccCCccccchHH-hhcCCcccccccccccccccC
Q 011891          155 PFDGLY--SLTYLYLTDCAITE-LPESLG-------LLSSLEELYLERNNFERIPESI-IRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       155 ~~~~l~--~L~~L~L~~~~l~~-lp~~l~-------~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      .+..+.  +|+.|++++|.++. +|..+.       .+++|+.|++++|+++.+|..+ ..+++|+.|++++|. ++.+|
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcC
Confidence            766544  89999999999987 677677       7789999999999999999765 458999999999985 44777


Q ss_pred             CC-cc----------CcceecccccccCccccCCCC---CcceeEEEecCC
Q 011891          224 KL-PC----------NLYWLDAQHCTTLESLSGLFS---SYKCVFFYLNEN  260 (475)
Q Consensus       224 ~l-~~----------~L~~L~i~~c~~L~~l~~~~~---~~~~~~l~~~~c  260 (475)
                      .. ..          +|+.|+++++ .++.++....   -.....+.+.++
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N  523 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN  523 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS
T ss_pred             HHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC
Confidence            52 11          8999999887 4656665432   123455666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=2e-21  Score=187.53  Aligned_cols=207  Identities=24%  Similarity=0.352  Sum_probs=110.4

Q ss_pred             CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccC-Ccc
Q 011891            4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTA-IEE   80 (475)
Q Consensus         4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~-i~~   80 (475)
                      +.++.+|.++  .++|++|+++++. ++.++. ..+.++++|++|++++| .+..+ |. +..+++|++|++++|. +..
T Consensus        21 ~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~   95 (285)
T 1ozn_A           21 QGLQAVPVGI--PAASQRIFLHGNR-ISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (285)
T ss_dssp             SCCSSCCTTC--CTTCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             CCcccCCcCC--CCCceEEEeeCCc-CCccCH-HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence            4455555433  3456666666543 333332 23455566666666654 23333 32 5555666666666664 554


Q ss_pred             c-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCC
Q 011891           81 L-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFD  157 (475)
Q Consensus        81 l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~  157 (475)
                      + +..+..+++|++|++++|......|..+..+++|++|++++|.++.++.. +..+++|+.|++++|.. ..++. .+.
T Consensus        96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~  174 (285)
T 1ozn_A           96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFR  174 (285)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTT
T ss_pred             cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhc
Confidence            4 34555566666666666544333344455566666666666666555443 45556666666665542 23332 345


Q ss_pred             CCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccccc
Q 011891          158 GLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c  216 (475)
                      ++++|+.|++++|.++++ |..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            555666666666665553 555555666666666666665554 23555556666655555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=199.95  Aligned_cols=241  Identities=21%  Similarity=0.244  Sum_probs=156.6

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++|+|+.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.  +..+++|++|+|++|.
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCc-cCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc
Confidence            4677888875 578888889999988864 444422 35778888888888885 4666665  5678888888888888


Q ss_pred             Cccc-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcC-----------
Q 011891           78 IEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG-----------  144 (475)
Q Consensus        78 i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~-----------  144 (475)
                      +..+ +..+..+++|++|++++|......|..+..+++|++|++++|.++.++. .+..+++|+.|+++           
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  195 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS  195 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence            7755 4467777888888887765444445566677777777777776665554 24444555555554           


Q ss_pred             -------------CCCCCCccccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcc
Q 011891          145 -------------DCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLS  209 (475)
Q Consensus       145 -------------~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~  209 (475)
                                   +|..+..++.......+|+.|++++|+++++| ..+..+++|+.|+|++|.++.++ ..+..+++|+
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ  275 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC
Confidence                         44444444443333446666666667676665 35667777777777777776555 3466677777


Q ss_pred             cccccccccccccCCC---ccCcceecccccccCccccC
Q 011891          210 SLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       210 ~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~  245 (475)
                      .|++++|......|..   .++|+.|+++++ .++.++.
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  313 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE  313 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence            7777776433322321   256777777775 4554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=1.3e-21  Score=201.44  Aligned_cols=226  Identities=23%  Similarity=0.336  Sum_probs=181.8

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCCcc
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i~~   80 (475)
                      +.+++.+|.++.  ++|+.|+|++|. ++.++. ..+.++++|++|+|++| .+..++ . +..+++|++|+|++|.++.
T Consensus        63 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           63 RRGLSEVPQGIP--SNTRYLNLMENN-IQMIQA-DTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             SSCCSSCCSCCC--TTCSEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CCCcCccCCCCC--CCccEEECcCCc-CceECH-HHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc
Confidence            456778887654  689999999974 455433 45788999999999996 555554 3 7899999999999999998


Q ss_pred             cCcc-cCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC
Q 011891           81 LPSS-IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF  156 (475)
Q Consensus        81 lp~~-i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~  156 (475)
                      ++.. +..+++|++|+|++|. +..+| ..+.++++|++|++++ +.+..++. .+..+++|+.|++++|. +..+| .+
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~  214 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NL  214 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CC
T ss_pred             cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cc
Confidence            8764 7889999999999976 44554 4688999999999998 56667765 58889999999999987 45555 46


Q ss_pred             CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC-C---ccCcc
Q 011891          157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLY  230 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~-l---~~~L~  230 (475)
                      ..+++|+.|+|++|.++++ |..+..+++|+.|++++|+++.+ +..+..+++|+.|+|++| .++.+|. .   .++|+
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCC
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCC
Confidence            7889999999999999985 77899999999999999999866 467888999999999998 4556653 1   34566


Q ss_pred             eeccccc
Q 011891          231 WLDAQHC  237 (475)
Q Consensus       231 ~L~i~~c  237 (475)
                      .|+++++
T Consensus       294 ~L~L~~N  300 (452)
T 3zyi_A          294 ELHLHHN  300 (452)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            6666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=1.4e-21  Score=192.81  Aligned_cols=224  Identities=19%  Similarity=0.245  Sum_probs=133.1

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      ++++++.+|..+  .++|+.|++++|. ++.++. ..+.++++|++|++++|. +..+ |. +..+++|++|++++|.++
T Consensus        41 ~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~  115 (332)
T 2ft3_A           41 SDLGLKAVPKEI--SPDTTLLDLQNND-ISELRK-DDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLV  115 (332)
T ss_dssp             CSSCCSSCCSCC--CTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred             CCCCccccCCCC--CCCCeEEECCCCc-CCccCH-hHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCC
Confidence            456677777655  3577788887754 444432 346677777888887754 4443 44 667777888888777777


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc---cCCcccCCCCCcCEEEcCCCCCCCccccCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPF  156 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~  156 (475)
                      .+|..+.  ++|++|++++|......+..+..+++|++|++++|.++   ..+..+..+ +|+.|++++|. +..+|..+
T Consensus       116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~  191 (332)
T 2ft3_A          116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDL  191 (332)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSS
T ss_pred             ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccc
Confidence            7776654  67777777776433322334677777777777777765   234445555 66666666655 33344332


Q ss_pred             CCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCcce
Q 011891          157 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYW  231 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~  231 (475)
                      .  ++|+.|++++|.+++++ ..+..+++|+.|++++|+++.++ ..+..+++|+.|++++| .++.+|..   .++|+.
T Consensus       192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQV  268 (332)
T ss_dssp             C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCE
T ss_pred             c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCE
Confidence            2  45666666666665533 44555566666666666665444 24555566666666655 33344431   244555


Q ss_pred             eccccc
Q 011891          232 LDAQHC  237 (475)
Q Consensus       232 L~i~~c  237 (475)
                      |+++++
T Consensus       269 L~l~~N  274 (332)
T 2ft3_A          269 VYLHTN  274 (332)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=3.5e-21  Score=211.67  Aligned_cols=254  Identities=17%  Similarity=0.164  Sum_probs=176.1

Q ss_pred             CCCCCcccccc--cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCC-CcEEEcccc
Q 011891            1 MPHSNIEQLSE--SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGN-IEKILLDGT   76 (475)
Q Consensus         1 l~~s~l~~L~~--~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~-L~~L~L~~~   76 (475)
                      |++|++..+|.  .+..+++|+.|+|++|. ++.+|   .++++++|+.|+|++|. +..+|. +..+++ |++|+|++|
T Consensus       555 Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          555 MGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE---AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             CCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred             eeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch---hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence            34566666666  66666666667666654 33555   35566666677776643 336665 566666 777777777


Q ss_pred             CCcccCcccCCCCC--CcEEeeeCCCCCCcccc---ccC--CCCCCcEEEeeCcCCccCCcccC-CCCCcCEEEcCCCCC
Q 011891           77 AIEELPSSIGCLSR--LLELNLGDCKNLKTLPS---SLC--KLKSLEEICLTGSAIEELPSPIE-CLSALCVLDLGDCKS  148 (475)
Q Consensus        77 ~i~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~---~l~--~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~c~~  148 (475)
                      .++.+|..+..++.  |+.|++++|.....+|.   .+.  .+++|+.|++++|.++.+|..+. .+++|+.|++++|. 
T Consensus       630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-  708 (876)
T 4ecn_A          630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-  708 (876)
T ss_dssp             CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-
T ss_pred             CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-
Confidence            66666666555543  67777776654443332   222  33478888888888888887654 78889999999886 


Q ss_pred             CCccccCCCC--------CCCCCEEEecCCCCCCcchhhC--CCCCCceeEeccCCccccchHHhhcCCcccccccc---
Q 011891          149 LKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY---  215 (475)
Q Consensus       149 l~~l~~~~~~--------l~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~---  215 (475)
                      +..+|.....        +++|+.|+|++|+++.+|..+.  .+++|+.|+|++|+++.+|..+..+++|+.|+|++   
T Consensus       709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~  788 (876)
T 4ecn_A          709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD  788 (876)
T ss_dssp             CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred             CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCC
Confidence            4466654422        3389999999999999998887  89999999999999988998899999999999977   


Q ss_pred             ---cccccccCCC---ccCcceecccccccCccccCCCCCcceeEEEecCCcc
Q 011891          216 ---CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFK  262 (475)
Q Consensus       216 ---c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~~  262 (475)
                         |.....+|..   .++|+.|++++|. +..++.... .....+.+.+|.-
T Consensus       789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~l  839 (876)
T 4ecn_A          789 AEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNPN  839 (876)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCTT
T ss_pred             cccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCCC
Confidence               4445566642   4678899998875 477776533 3456677777753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=1.1e-20  Score=195.66  Aligned_cols=230  Identities=16%  Similarity=0.170  Sum_probs=173.0

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      .+.+++.+|.++.  ++|+.|+|++|. ++.++. ..+.++++|++|+|++| .+..+ |. +..+++|++|+|++|.++
T Consensus        19 ~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           19 HRKRFVAVPEGIP--TETRLLDLGKNR-IKTLNQ-DEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK   93 (477)
T ss_dssp             CSCCCSSCCSCCC--TTCSEEECCSSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCcCCCCCC--CCCcEEECCCCc-cceECH-hHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCC
Confidence            3567888887664  689999999964 555543 46788999999999997 45554 54 889999999999999999


Q ss_pred             ccCcc-cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891           80 ELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        80 ~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      .+|.. +.++++|++|+|++|......|..+..+++|++|++++|.++.+ +..+..+++|+.|++++|......+..+.
T Consensus        94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  173 (477)
T 2id5_A           94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS  173 (477)
T ss_dssp             SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred             ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence            98874 68999999999999877666778899999999999999999866 45789999999999999874332222345


Q ss_pred             CCCCCCEEEecCCCCCCc-------------------------chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccc
Q 011891          158 GLYSLTYLYLTDCAITEL-------------------------PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSL  211 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~l-------------------------p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L  211 (475)
                      ++++|+.|++++|.+..+                         |.......+|+.|++++|+++.+| ..+..+++|+.|
T Consensus       174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  253 (477)
T 2id5_A          174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL  253 (477)
T ss_dssp             TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred             ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence            556666666666655543                         333333346666777777777777 467788888888


Q ss_pred             cccccccccccCC----CccCcceeccccc
Q 011891          212 LVSYCERLQSLPK----LPCNLYWLDAQHC  237 (475)
Q Consensus       212 ~l~~c~~l~~lp~----l~~~L~~L~i~~c  237 (475)
                      ++++|. ++.++.    -.++|+.|+++++
T Consensus       254 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          254 NLSYNP-ISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             ECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred             ECCCCc-CCccChhhccccccCCEEECCCC
Confidence            888875 444432    1356788887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=7.8e-21  Score=187.31  Aligned_cols=215  Identities=24%  Similarity=0.390  Sum_probs=124.5

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc-CcccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   94 (475)
                      +|+.++++++ .++.+|.  .+  .+.|+.|++++| .+..++.  +..+++|++|++++|.++.+ |..+..+++|++|
T Consensus        32 ~l~~l~~~~~-~l~~lp~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPK--DL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTS-CCCSCCC--SC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCC-CccccCc--cC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            5666666653 3455553  11  245666666664 3444443  55666666666666666655 5566666666666


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~  171 (475)
                      ++++|. ++.+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|....  ..+..+.++++|+.|++++|.
T Consensus       106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            666643 445555443  566666666666665554 35666666666666665422  233344566666666666666


Q ss_pred             CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC--C--ccCcceecccccccCccccC
Q 011891          172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK--L--PCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~--l--~~~L~~L~i~~c~~L~~l~~  245 (475)
                      ++++|..+.  ++|+.|++++|.++.+ |..+..+++|+.|++++|. ++.++.  +  .++|+.|+++++ .++.++.
T Consensus       183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~  257 (330)
T 1xku_A          183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPG  257 (330)
T ss_dssp             CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred             cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence            666655433  5666666666666544 3556666666666666664 222221  1  245666666665 3444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=4.5e-22  Score=194.06  Aligned_cols=215  Identities=17%  Similarity=0.242  Sum_probs=182.4

Q ss_pred             CCCCCccccccc-ccCCCCCcEEeccCCCCccCCC-ChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTP-NPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~   77 (475)
                      |++++++.++.+ ++.+++|++|+|++|. ++... ....+..+++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus        35 L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           35 LESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN  112 (306)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE
T ss_pred             CCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc
Confidence            567889999876 6899999999999974 33321 1134557899999999996 4666776 8899999999999999


Q ss_pred             CcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc--CCcccCCCCCcCEEEcCCCCCCCccc
Q 011891           78 IEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLK  153 (475)
Q Consensus        78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~l~  153 (475)
                      ++.++.  .+..+++|++|++++|......+..+..+++|++|++++|.++.  +|..+..+++|+.|++++|......|
T Consensus       113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  192 (306)
T 2z66_A          113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  192 (306)
T ss_dssp             EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence            998774  78899999999999987766777788999999999999999985  78899999999999999998665557


Q ss_pred             cCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccc-cchHHhhcC-Ccccccccccc
Q 011891          154 LPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER-IPESIIRLS-KLSSLLVSYCE  217 (475)
Q Consensus       154 ~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~l~~c~  217 (475)
                      ..+..+++|+.|++++|.+++++. .+..+++|+.|++++|+++. .|..+..++ +|+.|++++|+
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            778899999999999999999654 68899999999999999975 456777774 99999999985

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.2e-21  Score=208.98  Aligned_cols=249  Identities=20%  Similarity=0.213  Sum_probs=188.2

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc-
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-   81 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l-   81 (475)
                      ++.++.++ ++..+++|+.|++++|.. +.+|.   + .+++|++|++++|..+..+ .+..+++|++|++++|.++.+ 
T Consensus       294 ~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          294 GVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             SCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEE
T ss_pred             Cccchhhh-hccccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCc
Confidence            45555565 667777777777777655 66664   3 6777888888877555444 456788888888888887755 


Q ss_pred             --CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc--ccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891           82 --PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        82 --p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                        +..+..+++|++|++++|. +..+|..+..+++|++|++++|.+...+.  .+..+++|+.|++++|......|..+.
T Consensus       367 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          367 CCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             ECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             chhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence              6778888899999998865 56677788889999999999998886654  678889999999999887666777788


Q ss_pred             CCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCCC---ccCcce
Q 011891          158 GLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYW  231 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~  231 (475)
                      ++++|+.|++++|.+++  +|..++.+++|+.|++++|+++.+ |..+..+++|+.|++++|+.....|..   .++|+.
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            88999999999998886  677888999999999999998755 467888999999999998644443432   367889


Q ss_pred             ecccccccCccccCCCCCc--ceeEEEecCC
Q 011891          232 LDAQHCTTLESLSGLFSSY--KCVFFYLNEN  260 (475)
Q Consensus       232 L~i~~c~~L~~l~~~~~~~--~~~~l~~~~c  260 (475)
                      |++++|. ++.++......  ....+.+.++
T Consensus       526 L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          526 LDCSFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             EECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             EECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence            9998874 77776642222  2455666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=6.4e-21  Score=183.94  Aligned_cols=195  Identities=24%  Similarity=0.304  Sum_probs=166.4

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~   77 (475)
                      |++++|+.++ +.+..+++|++|+|++|. ++.++. ..+.++++|++|++++|..++.++ . +..+++|++|++++|.
T Consensus        39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           39 LHGNRISHVPAASFRACRNLTILWLHSNV-LARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence            4678888887 468999999999999974 555432 367889999999999987677774 3 7899999999999999


Q ss_pred             Cccc-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccC
Q 011891           78 IEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLP  155 (475)
Q Consensus        78 i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~  155 (475)
                      +..+ +..+..+++|++|++++|......+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|......|..
T Consensus       117 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence            9977 5578899999999999976544444558899999999999999998876 4889999999999999876666778


Q ss_pred             CCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccc
Q 011891          156 FDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFER  197 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~  197 (475)
                      +..+++|+.|++++|.+++++ ..+..+++|+.|++++|.+..
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            889999999999999999976 458999999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=6.1e-21  Score=189.21  Aligned_cols=230  Identities=20%  Similarity=0.295  Sum_probs=183.1

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++++++.++ .+..+++|++|++++|. ++.++.   +.++++|+.|++++|..+..++.+..+++|++|++++|.+..
T Consensus        95 L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~  169 (347)
T 4fmz_A           95 IGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD  169 (347)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC
Confidence            4677888874 68999999999999964 555543   778999999999999888888889999999999999999887


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  160 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~  160 (475)
                      ++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++. +..++
T Consensus       170 ~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~  243 (347)
T 4fmz_A          170 VTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLS  243 (347)
T ss_dssp             CGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCT
T ss_pred             chh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCC
Confidence            776 7889999999999875 555654 7788899999999988887766 77888899999988874 33443 67888


Q ss_pred             CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCC---CccCcceeccccc
Q 011891          161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHC  237 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~c  237 (475)
                      +|+.|++++|.+++++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|......+.   -.++|+.|++++|
T Consensus       244 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          244 QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             CCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            8999999999888874 5788889999999999888875 577888899999988854333322   2367888888887


Q ss_pred             ccCcccc
Q 011891          238 TTLESLS  244 (475)
Q Consensus       238 ~~L~~l~  244 (475)
                      . ++.++
T Consensus       322 ~-l~~~~  327 (347)
T 4fmz_A          322 H-ITDIR  327 (347)
T ss_dssp             S-CCCCG
T ss_pred             c-ccccc
Confidence            5 44443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=194.25  Aligned_cols=190  Identities=20%  Similarity=0.213  Sum_probs=132.4

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      ++++++.+|.++.  ++|++|++++|. ++.++. ..+.++++|++|++++| .+..+ |. +..+++|++|++++|.++
T Consensus        39 ~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           39 SSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             CSTTCSSCCTTCC--TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccccccccc--ccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            4566777776554  478888888754 455543 34667778888888875 44444 33 677788888888888887


Q ss_pred             ccCcc-cCCCCCCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCc-CCccC-CcccCCCCCcCEEEcCCCCCCCcccc
Q 011891           80 ELPSS-IGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGS-AIEEL-PSPIECLSALCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        80 ~lp~~-i~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~  154 (475)
                      .++.. ++++++|++|++++|. ++.+|.  .+..+++|++|++++| .++.+ +..+..+++|++|++++|......|.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            77765 6778888888888753 445655  5677788888888877 46655 34677778888888887775555566


Q ss_pred             CCCCCCCCCEEEecCCCCCCcchhh-CCCCCCceeEeccCCccc
Q 011891          155 PFDGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFER  197 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~L~~n~l~~  197 (475)
                      .+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.
T Consensus       193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence            6777777888888888777765543 346777778777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=6.3e-21  Score=199.67  Aligned_cols=96  Identities=21%  Similarity=0.238  Sum_probs=68.5

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~   79 (475)
                      |++|+|+.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.. .+++|++|++++|.++
T Consensus        28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           28 ISQNYISELWTSDILSLSKLRILIISHNR-IQYLDI-SVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             CCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEG-GGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSCCS
T ss_pred             CCCCcccccChhhccccccccEEecCCCc-cCCcCh-HHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCccc
Confidence            4667777776 567788888888888864 344321 35677888888888885 55667766 7788888888888777


Q ss_pred             c--cCcccCCCCCCcEEeeeCCC
Q 011891           80 E--LPSSIGCLSRLLELNLGDCK  100 (475)
Q Consensus        80 ~--lp~~i~~l~~L~~L~L~~c~  100 (475)
                      .  +|..++++++|++|++++|.
T Consensus       104 ~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B          104 ALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             SCCCCGGGGGCTTCCEEEEEESS
T ss_pred             cccchhhhccCCcceEEEecCcc
Confidence            5  45677777777777777754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=6.3e-22  Score=197.10  Aligned_cols=233  Identities=18%  Similarity=0.195  Sum_probs=188.3

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++|+|+.++. .+..+++|++|++++| .++.++. ..+.++++|++|++++| .+..+|.  +..+++|++|++++|.
T Consensus        59 l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           59 LSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             CCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCC
Confidence            46788998886 7899999999999997 4555543 35788999999999995 5667776  7899999999999999


Q ss_pred             CcccCc--ccCCCCCCcEEeeeCCCCCCcc-ccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccc
Q 011891           78 IEELPS--SIGCLSRLLELNLGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK  153 (475)
Q Consensus        78 i~~lp~--~i~~l~~L~~L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~  153 (475)
                      ++.+|.  .+..+++|++|++++|..+..+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.. ..++
T Consensus       136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~  214 (353)
T 2z80_A          136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLL  214 (353)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHH
T ss_pred             CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccch
Confidence            999987  7889999999999998767766 45788999999999999999965 77899999999999999884 4454


Q ss_pred             cC-CCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEeccCCcc-----ccchHHhhcCCcccccccccccccccC
Q 011891          154 LP-FDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       154 ~~-~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      .. +..+++|+.|++++|.+++++.    .....+.++.++++++.+.     .+|..+..+++|+.|++++| .++.+|
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~  293 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP  293 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC
T ss_pred             hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC
Confidence            33 2458899999999999988432    1234667888888887764     57888899999999999998 455776


Q ss_pred             CC----ccCcceecccccc
Q 011891          224 KL----PCNLYWLDAQHCT  238 (475)
Q Consensus       224 ~l----~~~L~~L~i~~c~  238 (475)
                      .-    .++|+.|++++++
T Consensus       294 ~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          294 DGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHHhcCCCCCEEEeeCCC
Confidence            42    3567777777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.1e-21  Score=209.28  Aligned_cols=229  Identities=16%  Similarity=0.175  Sum_probs=194.7

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC---cC-cCCCCCCcEEEccccC
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~---p~-i~~l~~L~~L~L~~~~   77 (475)
                      .+++++.+| .+ .+++|+.|++++|..+...+    +..+++|++|++++|. +..+   |. +..+++|++|++++|.
T Consensus       315 ~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~  387 (606)
T 3vq2_A          315 IRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG  387 (606)
T ss_dssp             ESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred             ccccCcccc-cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc
Confidence            467778888 45 99999999999997766553    5688999999999964 4443   44 6789999999999999


Q ss_pred             CcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCC-cccc
Q 011891           78 IEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK-SLKL  154 (475)
Q Consensus        78 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~-~l~~  154 (475)
                      +..+|..+..+++|++|++++|......| ..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.... .+|.
T Consensus       388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence            99999999999999999999987666666 578899999999999999985 56778999999999999998655 3677


Q ss_pred             CCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC----CccC
Q 011891          155 PFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCN  228 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~  228 (475)
                      .+..+++|+.|++++|.++++ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+ ++.+|.    +|.+
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~  546 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKS  546 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTT
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhccc
Confidence            789999999999999999984 67789999999999999999866 7889999999999999995 667765    3456


Q ss_pred             cceecccccc
Q 011891          229 LYWLDAQHCT  238 (475)
Q Consensus       229 L~~L~i~~c~  238 (475)
                      |+.|++++++
T Consensus       547 L~~l~l~~N~  556 (606)
T 3vq2_A          547 LAFFNLTNNS  556 (606)
T ss_dssp             CCEEECCSCC
T ss_pred             CcEEEccCCC
Confidence            8888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=5.7e-21  Score=203.69  Aligned_cols=232  Identities=21%  Similarity=0.247  Sum_probs=138.9

Q ss_pred             CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCC
Q 011891            2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i   78 (475)
                      +++++..++.. ++.+++|++|++++| .++.+|.  .+.++++|++|++++|. +..+ |. +..+++|++|++++|.+
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~--~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPS--GLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCS--SCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             ecCccCccCHHHhccccCCCEEeccCC-ccCCCCh--hhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCc
Confidence            45666666543 667777777777775 4556654  45667777777777753 3333 32 55667777777777665


Q ss_pred             c-ccCc-ccCCCCCCcEEeeeCCCCCCcc--ccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccc
Q 011891           79 E-ELPS-SIGCLSRLLELNLGDCKNLKTL--PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK  153 (475)
Q Consensus        79 ~-~lp~-~i~~l~~L~~L~L~~c~~l~~l--p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~  153 (475)
                      . .++. .+..+++|++|++++|......  |..+..+++|++|++++|.+..+ |..+..+++|+.|++++|......+
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            5 4444 3666677777777765443322  45566667777777777666643 4456666677777776665433333


Q ss_pred             c-CCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccc--c--chHHhhcCCcccccccccccccccCCC--
Q 011891          154 L-PFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER--I--PESIIRLSKLSSLLVSYCERLQSLPKL--  225 (475)
Q Consensus       154 ~-~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~--l--p~~i~~l~~L~~L~l~~c~~l~~lp~l--  225 (475)
                      . .+..+++|+.|++++|.++. .|..++.+++|+.|++++|+++.  +  +..+..+++|+.|++++|......|..  
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  497 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT  497 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc
Confidence            2 24566667777777666665 34556666667777776666643  1  234666666666666666433322321  


Q ss_pred             -ccCcceeccccc
Q 011891          226 -PCNLYWLDAQHC  237 (475)
Q Consensus       226 -~~~L~~L~i~~c  237 (475)
                       .++|+.|+++++
T Consensus       498 ~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          498 SLKMMNHVDLSHN  510 (606)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccCCCEEECCCC
Confidence             245666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.1e-20  Score=192.38  Aligned_cols=219  Identities=28%  Similarity=0.418  Sum_probs=178.5

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCCcccC-cccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L   94 (475)
                      ..+.++.++ ..++.+|.  .+  .++|++|+|++| .+..+ |. +..+++|++|+|++|.++.++ ..+..+++|++|
T Consensus        55 ~~~~v~c~~-~~l~~iP~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           55 QFSKVVCTR-RGLSEVPQ--GI--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SSCEEECCS-SCCSSCCS--CC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcEEEECC-CCcCccCC--CC--CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            356777776 56788885  22  268999999996 45555 44 889999999999999999776 578899999999


Q ss_pred             eeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891           95 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        95 ~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~  171 (475)
                      +|++|. +..+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++. .+.++++|+.|+|++|+
T Consensus       129 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            999976 45555 458889999999999999998876 688899999999999988888876 46889999999999999


Q ss_pred             CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccCC---CccCcceecccccccCccccC
Q 011891          172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      ++++| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|......+.   -.++|+.|+++++ .++.++.
T Consensus       208 l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  283 (452)
T 3zyi_A          208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH  283 (452)
T ss_dssp             CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence            99987 478899999999999999866 67889999999999999864333332   2368999999887 5666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=1.9e-20  Score=184.76  Aligned_cols=229  Identities=21%  Similarity=0.335  Sum_probs=146.8

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc-CcccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   94 (475)
                      +|+.++++++ .++.+|.  .+  .++|+.|++++|. +..++.  +..+++|++|++++|.++.+ |..++++++|++|
T Consensus        34 ~l~~l~~~~~-~l~~ip~--~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPK--EI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSS-CCSSCCS--CC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCC-CccccCC--CC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            5777777774 4566664  12  2567777777753 444432  66777777777777777765 5567777777777


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~  171 (475)
                      ++++|. ++.+|..+.  ++|++|++++|.++.+|.. +..+++|+.|++++|....  ..+..+..+ +|+.|++++|.
T Consensus       108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            777753 456666554  6777777777777776653 6777777777777776421  334444555 77777777777


Q ss_pred             CCCcchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC----CccCcceecccccccCccccCC
Q 011891          172 ITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL  246 (475)
Q Consensus       172 l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~~L~~l~~~  246 (475)
                      ++++|..+.  ++|+.|++++|.++.++ ..+..+++|+.|++++|. ++.++.    -.++|+.|+++++ .++.++..
T Consensus       184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~  259 (332)
T 2ft3_A          184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAG  259 (332)
T ss_dssp             CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChh
Confidence            777766543  67777777777777655 566777777777777764 333332    1356777777765 45555543


Q ss_pred             CCC-cceeEEEecCC
Q 011891          247 FSS-YKCVFFYLNEN  260 (475)
Q Consensus       247 ~~~-~~~~~l~~~~c  260 (475)
                      ... .....+.+.++
T Consensus       260 l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTN  274 (332)
T ss_dssp             GGGCTTCCEEECCSS
T ss_pred             hhcCccCCEEECCCC
Confidence            222 12344555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=191.17  Aligned_cols=218  Identities=28%  Similarity=0.426  Sum_probs=171.6

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccC-cccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L   94 (475)
                      ..+.++.++ ..++.+|.  .+  .++++.|+|++| .+..++.  +..+++|++|+|++|.++.++ ..+.++++|++|
T Consensus        44 ~~~~v~c~~-~~l~~iP~--~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVICVR-KNLREVPD--GI--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEECCS-CCCSSCCS--CC--CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCCEEEeCC-CCcCcCCC--CC--CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            356777776 57788885  22  267899999985 4555543  788999999999999998776 468889999999


Q ss_pred             eeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891           95 NLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        95 ~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~  171 (475)
                      +|++|. ++.+|. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++. .+.++++|+.|++++|+
T Consensus       118 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          118 ELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             ECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             ECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            999974 555554 58889999999999999987766 678899999999999888877765 46788999999999999


Q ss_pred             CCCcchhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccccccccC-C---CccCcceecccccccCccccC
Q 011891          172 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLP-K---LPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       172 l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp-~---l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      ++++|. +..+++|+.|+|++|+++.+ |..+..+++|+.|++++|. ++.++ .   -.++|+.|+++++ .++.++.
T Consensus       197 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  272 (440)
T 3zyj_A          197 LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPH  272 (440)
T ss_dssp             CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred             Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence            998874 78889999999999999866 5778889999999999885 33333 2   2467888998886 4665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=4.3e-20  Score=196.92  Aligned_cols=215  Identities=22%  Similarity=0.238  Sum_probs=122.0

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~   79 (475)
                      ++++++.+|.++..+++|++|++++|.. +.++. ..+.++++|++|++++|.....+|.  +..+++|++|++++|.+.
T Consensus       286 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          286 TATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             TTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred             cCCccCCCChhhcccccCCEEECccCCc-CcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence            4555666666666666666666666532 22211 2345566666666666554444443  456666666666666665


Q ss_pred             cc---CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-C-cccCCCCCcCEEEcCCCCCCCcccc
Q 011891           80 EL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-P-SPIECLSALCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        80 ~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p-~~i~~l~~L~~L~L~~c~~l~~l~~  154 (475)
                      .+   +..+..+++|++|++++|......|..+..+++|++|++++|.++.. + ..+..+++|+.|++++|......+.
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence            43   44555666666666666554444455556666666666666665533 2 2255666666666666654444444


Q ss_pred             CCCCCCCCCEEEecCCCCCC--c--chhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccccccc
Q 011891          155 PFDGLYSLTYLYLTDCAITE--L--PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCER  218 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~~~l~~--l--p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~~  218 (475)
                      .+.++++|+.|++++|.+++  +  +..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+.
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            45556666666666666654  1  23455566666666666666544 34556666666666666643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=196.55  Aligned_cols=119  Identities=15%  Similarity=0.135  Sum_probs=100.9

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC-cC-cCCCCCCcEEEccccCC
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~-p~-i~~l~~L~~L~L~~~~i   78 (475)
                      +++++++.+|..+.  ++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+ |. ++.+++|++|+|++|.+
T Consensus         7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            7 RSKNGLIHVPKDLS--QKTTILNISQNY-ISELWT-SDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CTTSCCSSCCCSCC--TTCSEEECCSSC-CCCCCH-HHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             cCCCCccccccccc--ccccEEECCCCc-ccccCh-hhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCce
Confidence            57889999998776  899999999975 555542 467899999999999975 5555 54 88999999999999999


Q ss_pred             cccCcccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCc
Q 011891           79 EELPSSIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIE  126 (475)
Q Consensus        79 ~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~  126 (475)
                      +.+|..  .+++|++|++++|.... .+|..++++++|++|++++|.++
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            999887  89999999999987655 57888999999999999888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=9.5e-21  Score=194.80  Aligned_cols=125  Identities=23%  Similarity=0.210  Sum_probs=103.0

Q ss_pred             CCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEe
Q 011891          113 KSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYL  190 (475)
Q Consensus       113 ~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L  190 (475)
                      ++|++|++++|.+.. .|..+..+++|+.|++++|......+..+.++++|+.|++++|.++++ |..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            456777777777764 466789999999999999987666677888999999999999999985 678899999999999


Q ss_pred             ccCCcccc-chHHhhcCCcccccccccccccccCC----CccCcceecccccc
Q 011891          191 ERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT  238 (475)
Q Consensus       191 ~~n~l~~l-p~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~  238 (475)
                      ++|+++.+ |..+..+++|++|++++|+ ++.+|.    -.++|+.|++++++
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence            99999866 6789999999999999984 555654    23577888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=4.1e-20  Score=195.54  Aligned_cols=94  Identities=16%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            2 PHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         2 ~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      ++|+|..++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.. .+++|++|++++|.++.
T Consensus        60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B           60 SQNSISELRMPDISFLSELRVLRLSHNR-IRSLDF-HVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFNDFDV  135 (562)
T ss_dssp             CSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSCCSB
T ss_pred             CCCCccccChhhhccCCCccEEECCCCC-CCcCCH-HHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCCccc
Confidence            344454444 345555555555555542 222211 23445555555555553 24444444 45555555555555554


Q ss_pred             cC--cccCCCCCCcEEeeeCC
Q 011891           81 LP--SSIGCLSRLLELNLGDC   99 (475)
Q Consensus        81 lp--~~i~~l~~L~~L~L~~c   99 (475)
                      ++  ..++++++|++|++++|
T Consensus       136 l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          136 LPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CCCCGGGGGCTTCCEEEEECS
T ss_pred             cCchHhhcccCcccEEecCCC
Confidence            32  44555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=7.1e-20  Score=189.22  Aligned_cols=203  Identities=22%  Similarity=0.360  Sum_probs=117.8

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++++++.++. +..+++|++|++++|. ++.++.   +.++++|++|++++| .+..++.+..+++|++|++++|.+..
T Consensus        75 Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~  148 (466)
T 1o6v_A           75 FSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISD  148 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred             CCCCccCCchh-hhccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCccCC
Confidence            45666777765 7777777777777753 344332   566677777777764 45555556666666666666665544


Q ss_pred             cCc--------------------ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891           81 LPS--------------------SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV  140 (475)
Q Consensus        81 lp~--------------------~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  140 (475)
                      ++.                    .+.++++|++|++++|. +..++ .+..+++|++|++++|.+..+++ +..+++|+.
T Consensus       149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  225 (466)
T 1o6v_A          149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDE  225 (466)
T ss_dssp             CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred             ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCE
Confidence            321                    24566777777777764 44443 35666777777777776665544 455666666


Q ss_pred             EEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891          141 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       141 L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      |++++|.. ..++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       226 L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          226 LSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN  297 (466)
T ss_dssp             EECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             EECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC
Confidence            66666542 2222 23445555555555555555433 4455555555555555554443 444555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=2.3e-21  Score=189.75  Aligned_cols=173  Identities=18%  Similarity=0.188  Sum_probs=76.7

Q ss_pred             CCCCcEEEEeCCCCCCCCcC-c--CCCCCCcEEEccccCCcccCcccCCC-----CCCcEEeeeCCCCCCccccccCCCC
Q 011891           42 LNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEELPSSIGCL-----SRLLELNLGDCKNLKTLPSSLCKLK  113 (475)
Q Consensus        42 l~~L~~L~L~~c~~l~~~p~-i--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~c~~l~~lp~~l~~l~  113 (475)
                      +++|++|+|++|...+.+|. +  ..+++|++|++++|.++.+|..++.+     ++|++|++++|......|..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            44555555555433333443 2  44555555555555554444444333     4555555555443333334444555


Q ss_pred             CCcEEEeeCcCCcc---CCccc--CCCCCcCEEEcCCCCCCC--cccc-CCCCCCCCCEEEecCCCCCCcc--hhhCCCC
Q 011891          114 SLEEICLTGSAIEE---LPSPI--ECLSALCVLDLGDCKSLK--SLKL-PFDGLYSLTYLYLTDCAITELP--ESLGLLS  183 (475)
Q Consensus       114 ~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~L~~c~~l~--~l~~-~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~  183 (475)
                      +|++|++++|.+..   +|..+  ..+++|++|++++|....  .++. .+.++++|+.|++++|.+++.+  ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            55555555554331   12222  444555555555544211  1111 1123444555555555554422  2233344


Q ss_pred             CCceeEeccCCccccchHHhhcCCccccccccc
Q 011891          184 SLEELYLERNNFERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       184 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      +|+.|++++|+++.+|..+.  ++|+.|++++|
T Consensus       254 ~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             TCCEEECTTSCCSSCCSSCC--SEEEEEECCSS
T ss_pred             CCCEEECCCCccChhhhhcc--CCceEEECCCC
Confidence            55555555555554444333  45555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=5.6e-20  Score=189.99  Aligned_cols=223  Identities=18%  Similarity=0.281  Sum_probs=180.9

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +.++.++.++ ++..+++|++|+|++| .++.++.   +.++++|++|++++| .+..++.++.+++|++|++++|.++.
T Consensus        53 l~~~~i~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A           53 ADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             CCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCccCc-chhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCCCCC
Confidence            3567777776 5889999999999997 4666653   788999999999996 56667779999999999999999998


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCcccc--------------------ccCCCCCCcEEEeeCcCCccCCcccCCCCCcCE
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPS--------------------SLCKLKSLEEICLTGSAIEELPSPIECLSALCV  140 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~--------------------~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~  140 (475)
                      ++. +.++++|++|++++|. +..++.                    .+.++++|++|++++|.++.++ .+..+++|+.
T Consensus       127 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~  203 (466)
T 1o6v_A          127 IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLES  203 (466)
T ss_dssp             CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred             ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCE
Confidence            876 8899999999999875 333321                    2567788999999999988775 4788999999


Q ss_pred             EEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccccc
Q 011891          141 LDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ  220 (475)
Q Consensus       141 L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~  220 (475)
                      |++++|......+  ++.+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|. +.
T Consensus       204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~  278 (466)
T 1o6v_A          204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-IS  278 (466)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CC
T ss_pred             EEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cC
Confidence            9999998554433  567899999999999999885 57889999999999999988875 8899999999999984 33


Q ss_pred             ccCCC--ccCcceeccccc
Q 011891          221 SLPKL--PCNLYWLDAQHC  237 (475)
Q Consensus       221 ~lp~l--~~~L~~L~i~~c  237 (475)
                      .++.+  .++|+.|++++|
T Consensus       279 ~~~~~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          279 NISPLAGLTALTNLELNEN  297 (466)
T ss_dssp             CCGGGTTCTTCSEEECCSS
T ss_pred             ccccccCCCccCeEEcCCC
Confidence            44332  356777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.8e-19  Score=191.74  Aligned_cols=231  Identities=26%  Similarity=0.331  Sum_probs=162.0

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +++++|+.+|..+.  ++|+.|+|++| .++.+|.     .+++|++|+|++| .++.+|.  .+++|++|++++|.++.
T Consensus        47 ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           47 VGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCCCCC
T ss_pred             ecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCcCCC
Confidence            46788888887665  78999999886 4667764     4678888999886 4677776  67888888888888888


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccC-----------------CCCCcCEEEc
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE-----------------CLSALCVLDL  143 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~-----------------~l~~L~~L~L  143 (475)
                      +|.   .+++|++|++++|. ++.+|..   +++|++|++++|.++.+|..+.                 .+++|+.|++
T Consensus       116 l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L  188 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSV  188 (622)
T ss_dssp             CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence            776   56777788877753 5556653   3667777777777766654322                 1255666666


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      ++|. +..+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|+++.+|   ..+++|+.|++++| .++.+|
T Consensus       189 s~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp  257 (622)
T 3g06_A          189 SDNQ-LASLPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLP  257 (622)
T ss_dssp             CSSC-CSCCCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCC
T ss_pred             CCCC-CCCCCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCC
Confidence            6654 333332   23566777777777776664   3478889999999888888   45688999999988 677888


Q ss_pred             CCccCcceecccccccCccccCCCCC-cceeEEEecCCc
Q 011891          224 KLPCNLYWLDAQHCTTLESLSGLFSS-YKCVFFYLNENF  261 (475)
Q Consensus       224 ~l~~~L~~L~i~~c~~L~~l~~~~~~-~~~~~l~~~~c~  261 (475)
                      ..+++|+.|++++| .++.++..... .....+.+.++.
T Consensus       258 ~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          258 MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            88889999999887 56666653222 224556666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=1.8e-19  Score=185.67  Aligned_cols=187  Identities=21%  Similarity=0.190  Sum_probs=145.4

Q ss_pred             ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891           11 ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR   90 (475)
Q Consensus        11 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~   90 (475)
                      ..+..+++|++|++++| .++.+|   .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.++  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n-~l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNS-SITDMT---GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSS-CCCCCT---TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred             cChhHcCCCCEEEccCC-CcccCh---hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCc
Confidence            35678999999999996 566776   4788999999999996 567776 889999999999999999886  889999


Q ss_pred             CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCC
Q 011891           91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  170 (475)
Q Consensus        91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~  170 (475)
                      |++|++++|. ++.+|  ++.+++|++|++++|.++.++  +..+++|+.|++++|..+..+  .+..+++|+.|++++|
T Consensus       108 L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          108 LTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             CCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            9999999974 55565  889999999999999999874  778888888888888766655  3456677777777777


Q ss_pred             CCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccccccccc
Q 011891          171 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       171 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      +++++|  ++.+++|+.|++++|+++.++  +..+++|+.|++++|
T Consensus       181 ~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          181 KITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred             ccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCC
Confidence            777665  555566666666666655543  445555555555555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=1.3e-20  Score=198.51  Aligned_cols=108  Identities=18%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC-CCcC-cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLPE-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~-~~p~-i~~l~~L~~L~L~~~~   77 (475)
                      |++|++..++ +.+..+++|++|+|++|. ++.++. ..++++++|++|++++|.... ..|. ++.+++|++|++++|.
T Consensus        57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           57 LKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCCcCccChhhccccccCCEEECCCCc-cCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            3556666665 456777777777777753 444432 335667777777777753222 2233 5666777777777665


Q ss_pred             -CcccC-cccCCCCCCcEEeeeCCCCCCccccccC
Q 011891           78 -IEELP-SSIGCLSRLLELNLGDCKNLKTLPSSLC  110 (475)
Q Consensus        78 -i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~  110 (475)
                       +..+| ..+..+++|++|++++|......|..++
T Consensus       135 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A          135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             cccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence             45554 3566666666666666554444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=5e-20  Score=185.78  Aligned_cols=231  Identities=17%  Similarity=0.223  Sum_probs=181.4

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++++++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|++++| .+..+|.  +..+++|++|++++|.
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc
Confidence            46778888874 78899999999999875 555543 45788899999999995 5677776  5789999999999999


Q ss_pred             CcccCc-ccCCCCCCcEEeeeCCCCCCccc-cccC-------------------------------------CCCCCcEE
Q 011891           78 IEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLC-------------------------------------KLKSLEEI  118 (475)
Q Consensus        78 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~l~-------------------------------------~l~~L~~L  118 (475)
                      +..++. .+..+++|++|++++|... .++ ..+.                                     ..++|+.|
T Consensus       153 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L  231 (390)
T 3o6n_A          153 LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL  231 (390)
T ss_dssp             CCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred             cCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence            987754 5888999999999987532 221 1111                                     11345556


Q ss_pred             EeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcccc
Q 011891          119 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI  198 (475)
Q Consensus       119 ~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l  198 (475)
                      ++++|.++.. ..+..+++|++|++++|......|..+.++++|+.|++++|+++++|..+..+++|+.|++++|+++.+
T Consensus       232 ~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          232 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec
Confidence            6666666554 457789999999999998666667788899999999999999999988888999999999999999999


Q ss_pred             chHHhhcCCcccccccccccccccC-CCccCcceeccccc
Q 011891          199 PESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQHC  237 (475)
Q Consensus       199 p~~i~~l~~L~~L~l~~c~~l~~lp-~l~~~L~~L~i~~c  237 (475)
                      |..+..+++|+.|++++|+ ++.++ ...++|+.|+++++
T Consensus       311 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred             CccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence            9999999999999999985 44444 23466777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=3.9e-20  Score=194.77  Aligned_cols=131  Identities=17%  Similarity=0.302  Sum_probs=100.6

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++|+++.++ ..+..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..++.  ++.+++|++|++++|.
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG-DAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCC-cCccCh-hhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc
Confidence            4567777774 568888899999998874 444432 357788899999999864 455543  8889999999999998


Q ss_pred             Ccc--cCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCcc-CCcccCC
Q 011891           78 IEE--LPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIEC  134 (475)
Q Consensus        78 i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~  134 (475)
                      ++.  +|..++++++|++|++++|..++.+| ..+.++++|++|++++|.++. .|..+..
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            884  46778899999999999988777776 468889999999999988874 4555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4e-20  Score=180.67  Aligned_cols=192  Identities=20%  Similarity=0.308  Sum_probs=154.0

Q ss_pred             ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCc
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL   92 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   92 (475)
                      ...+++|+.|++++| .++.++   .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++ .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~---~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGT-GVTTIE---GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCC-CccCch---hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            446788999999886 455555   3677888999999885 5677777888889999999999888875 578888999


Q ss_pred             EEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC
Q 011891           93 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  172 (475)
Q Consensus        93 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l  172 (475)
                      +|++++|. +..++. +..+++|++|++++|.++.++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+
T Consensus       111 ~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          111 TLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCcc
Confidence            99998865 555664 7888899999999988887766 7788889999998886 444544 67888899999999988


Q ss_pred             CCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          173 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       173 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      ++++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus       186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          186 SDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             CcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence            88765 778888999999999888777 37888888888888874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=2.6e-20  Score=178.78  Aligned_cols=209  Identities=19%  Similarity=0.251  Sum_probs=150.9

Q ss_pred             CCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc
Q 011891            4 SNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         4 s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l   81 (475)
                      .++..+|.++.  ++|++|++++|. ++.++. ..+.++++|++|++++| .+..++.  +..+++|++|++++|.++.+
T Consensus        17 ~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           17 LNFYKIPDNLP--FSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCccccCCCCC--CCccEEECCCCc-ccccCH-hHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            45666666553  578888888864 455543 34677888888888886 4555554  67888888888888888866


Q ss_pred             C-cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc--CCcccCCCCCcCEEEcCCCCCCCccccCCCC
Q 011891           82 P-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLKLPFDG  158 (475)
Q Consensus        82 p-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~  158 (475)
                      + ..+..+++|++|++++|......+..++.+++|++|++++|.++.  +|..+..+++|++|++++|......+..+..
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            5 467788888888888865444334467788888888888888875  6778888888888888888744433334444


Q ss_pred             CCCCC----EEEecCCCCCCcchhhCCCCCCceeEeccCCccccchH-HhhcCCcccccccccc
Q 011891          159 LYSLT----YLYLTDCAITELPESLGLLSSLEELYLERNNFERIPES-IIRLSKLSSLLVSYCE  217 (475)
Q Consensus       159 l~~L~----~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~l~~c~  217 (475)
                      +.+|+    .|++++|.++.++.......+|+.|++++|+++.+|.. +..+++|+.|++++|+
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            44455    78888888888766666666888888888888877754 4778888888888774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=9.2e-20  Score=176.53  Aligned_cols=197  Identities=22%  Similarity=0.224  Sum_probs=149.7

Q ss_pred             ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSSIGCLSR   90 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~   90 (475)
                      +..+++|+.+++++ ..++.+|.  .+  .+.|+.|+|++|. +..++ . +..+++|++|++++|.++.++.. +.+++
T Consensus         6 ~~~l~~l~~l~~~~-~~l~~ip~--~~--~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDK-RNLTALPP--DL--PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTT-SCCSSCCS--CC--CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred             ccccCCccEEECCC-CCCCcCCC--CC--CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence            56778888888887 46777774  22  2678888888854 55543 3 77888888888888888877664 67888


Q ss_pred             CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecC
Q 011891           91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD  169 (475)
Q Consensus        91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~  169 (475)
                      |++|++++| .+..+|..+..+++|++|++++|.++.+|. .+..+++|+.|++++|......+..+..+++|+.|+|++
T Consensus        79 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            888888885 456788778888888888888888887764 577888888888888864433333456788888888888


Q ss_pred             CCCCCcchh-hCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          170 CAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       170 ~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      |+++.+|.. +..+++|+.|++++|+++.+|..+..+.+|+.|++++|+
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            888887654 467888888888888888888777777777777777763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=2.3e-20  Score=192.12  Aligned_cols=224  Identities=23%  Similarity=0.321  Sum_probs=126.5

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCC-------------CcEEEEeCCCCCCCCcCcC-----
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNK-------------LVILNLSGCSKLKSLPEIS-----   63 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~-------------L~~L~L~~c~~l~~~p~i~-----   63 (475)
                      +++++..+|++++++++|++|++++|.....+|.  .++++++             |++|++++| .+..+|.+.     
T Consensus        19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~~~~L~~   95 (454)
T 1jl5_A           19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPELPPHLES   95 (454)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTSCT--TSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSCCTTCSE
T ss_pred             ccCchhhCChhHhcccchhhhhccCCcccccCCc--ccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCCcCCCCE
Confidence            4677777888888888888888877654445553  3344433             255555553 244444321     


Q ss_pred             -------------CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc
Q 011891           64 -------------SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS  130 (475)
Q Consensus        64 -------------~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~  130 (475)
                                   .+++|++|++++|.++.++..   .++|++|++++|. ++.+| .++++++|++|++++|.++.+|.
T Consensus        96 L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~lp~  170 (454)
T 1jl5_A           96 LVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLKKLPD  170 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSCCCC
T ss_pred             EEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcCcccCC
Confidence                         123444444444444443321   1466777776653 34466 46777777777777777776665


Q ss_pred             ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCccc
Q 011891          131 PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS  210 (475)
Q Consensus       131 ~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~  210 (475)
                      .+   .+|++|++++|. +..+| .++++++|+.|++++|.++++|..   .++|+.|++++|.++.+|. +..+++|+.
T Consensus       171 ~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~-~~~l~~L~~  241 (454)
T 1jl5_A          171 LP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE-LQNLPFLTT  241 (454)
T ss_dssp             CC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred             Cc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccc-cCCCCCCCE
Confidence            43   467777777765 33455 466777777777777777776543   2577777777777777773 677777888


Q ss_pred             ccccccccccccCCCccCcceecccccccCcccc
Q 011891          211 LLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       211 L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~  244 (475)
                      |++++| .++.+|..+++|+.|+++++. ++.++
T Consensus       242 L~l~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~  273 (454)
T 1jl5_A          242 IYADNN-LLKTLPDLPPSLEALNVRDNY-LTDLP  273 (454)
T ss_dssp             EECCSS-CCSSCCSCCTTCCEEECCSSC-CSCCC
T ss_pred             EECCCC-cCCcccccccccCEEECCCCc-ccccC
Confidence            888776 455677667777777777653 44443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-21  Score=191.93  Aligned_cols=177  Identities=22%  Similarity=0.263  Sum_probs=94.1

Q ss_pred             CCCCCcEEEccccCCc-ccCccc--CCCCCCcEEeeeCCCCCCccccccCCC-----CCCcEEEeeCcCCccCC-cccCC
Q 011891           64 SAGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLPSSLCKL-----KSLEEICLTGSAIEELP-SPIEC  134 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~i~~lp-~~i~~  134 (475)
                      .+++|++|++++|.++ .+|..+  ..+++|++|++++|.. ..+|..++.+     ++|++|++++|.++.++ ..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4566666666666665 455544  5566666666666443 2235444444     56666666666666554 45556


Q ss_pred             CCCcCEEEcCCCCCCCcc--ccCC--CCCCCCCEEEecCCCCCCcc----hhhCCCCCCceeEeccCCccccc--hHHhh
Q 011891          135 LSALCVLDLGDCKSLKSL--KLPF--DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIP--ESIIR  204 (475)
Q Consensus       135 l~~L~~L~L~~c~~l~~l--~~~~--~~l~~L~~L~L~~~~l~~lp----~~l~~l~~L~~L~L~~n~l~~lp--~~i~~  204 (475)
                      +++|++|++++|...+.+  +..+  ..+++|+.|++++|.+++++    ..+..+++|+.|++++|+++..+  ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            666666666666543321  1112  45566666666666665422    12235566666666666665432  23344


Q ss_pred             cCCcccccccccccccccCC-CccCcceecccccccCccc
Q 011891          205 LSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESL  243 (475)
Q Consensus       205 l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l  243 (475)
                      +++|+.|++++|. ++.+|. ++++|+.|+++++ .++.+
T Consensus       252 l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~  289 (312)
T 1wwl_A          252 PSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRN  289 (312)
T ss_dssp             CTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSC
T ss_pred             cCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCC
Confidence            5566666666653 335543 3345666666554 34444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=6.5e-20  Score=172.27  Aligned_cols=205  Identities=23%  Similarity=0.309  Sum_probs=142.7

Q ss_pred             CCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC-CcccCc-ccCCCCCCcEEeeeCCCCC
Q 011891           27 CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA-IEELPS-SIGCLSRLLELNLGDCKNL  102 (475)
Q Consensus        27 ~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~c~~l  102 (475)
                      |..++.+|.   +.  ++|++|++++| .++.+|.  +..+++|++|++++|. ++.++. .+..+++|++|++++|..+
T Consensus        20 c~~l~~ip~---~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           20 CKDIQRIPS---LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             ECSCSSCCC---CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred             ccCccccCC---CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence            334666664   22  36788888874 4566554  6677888888888886 777765 5677888888888875556


Q ss_pred             Cccc-cccCCCCCCcEEEeeCcCCccCCcccCCCCCcC---EEEcCCCCCCCcccc-CCCCCCCCC-EEEecCCCCCCcc
Q 011891          103 KTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALC---VLDLGDCKSLKSLKL-PFDGLYSLT-YLYLTDCAITELP  176 (475)
Q Consensus       103 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~L~~c~~l~~l~~-~~~~l~~L~-~L~L~~~~l~~lp  176 (475)
                      +.+| ..+..+++|++|++++|.++.+|. +..+++|+   .|++++|..+..++. .+.++++|+ .|++++|+++.+|
T Consensus        94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C           94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence            6665 356778888888888888887776 67777777   888888745555554 367778888 8888888888777


Q ss_pred             hhhCCCCCCceeEeccCC-ccccc-hHHhhc-CCcccccccccccccccCC-CccCcceeccccccc
Q 011891          177 ESLGLLSSLEELYLERNN-FERIP-ESIIRL-SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTT  239 (475)
Q Consensus       177 ~~l~~l~~L~~L~L~~n~-l~~lp-~~i~~l-~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~  239 (475)
                      ......++|+.|++++|+ ++.+| ..+..+ ++|+.|++++| .++.+|. ..++|+.|++.++..
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence            655444788888888884 77775 456677 78888888876 4555554 356677777666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.1e-19  Score=193.59  Aligned_cols=230  Identities=17%  Similarity=0.240  Sum_probs=184.1

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++++|..++. .+..+++|++|+|++|. ++.+|. ..++++++|++|+|++| .+..+|.  ++.+++|++|+|++|.
T Consensus        82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc
Confidence            46788888874 78999999999999975 566654 45688999999999996 5667776  5789999999999999


Q ss_pred             CcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCC----------------------------------------CCCc
Q 011891           78 IEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKL----------------------------------------KSLE  116 (475)
Q Consensus        78 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l----------------------------------------~~L~  116 (475)
                      +..++. .++.+++|++|++++|.. ..++  ++.+                                        ++|+
T Consensus       159 l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~  235 (597)
T 3oja_B          159 LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT  235 (597)
T ss_dssp             CCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred             CCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence            987655 688999999999998753 3222  1112                                        2345


Q ss_pred             EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      .|++++|.++.. ..+..+++|+.|++++|......|..+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++
T Consensus       236 ~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          236 ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence            555555555543 5578899999999999997777777889999999999999999999988889999999999999999


Q ss_pred             ccchHHhhcCCcccccccccccccccC-CCccCcceecccccc
Q 011891          197 RIPESIIRLSKLSSLLVSYCERLQSLP-KLPCNLYWLDAQHCT  238 (475)
Q Consensus       197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp-~l~~~L~~L~i~~c~  238 (475)
                      .+|..+..+++|+.|++++|. +..++ ...++|+.|++++++
T Consensus       315 ~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          315 HVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred             ccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence            999999999999999999986 34443 345678888887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=1.3e-20  Score=184.91  Aligned_cols=224  Identities=17%  Similarity=0.161  Sum_probs=174.7

Q ss_pred             CCCCccccccc-ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            2 PHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         2 ~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      ..+++.+.+.. ...+++|++|+|++| .++.++. ..+.++++|++|+|++|. +...+++..+++|++|++++|.++.
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEE
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCcccc
Confidence            34455555433 456779999999997 4555542 467899999999999964 5555568899999999999999987


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCC-CC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF-DG  158 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~-~~  158 (475)
                      ++.    .++|++|++++|. +..++.  ..+++|++|++++|.++.++. .+..+++|+.|++++|......+..+ ..
T Consensus        95 l~~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  167 (317)
T 3o53_A           95 LLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (317)
T ss_dssp             EEE----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ccC----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence            764    4899999999975 444543  347889999999999998755 67889999999999998655444444 46


Q ss_pred             CCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceeccc
Q 011891          159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQ  235 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~  235 (475)
                      +++|+.|++++|.+++++.. ..+++|+.|++++|+++.+|..+..+++|+.|++++| .++.+|..   .++|+.|+++
T Consensus       168 l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred             cCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence            89999999999999998654 4589999999999999999888999999999999998 45566642   2455556555


Q ss_pred             cc
Q 011891          236 HC  237 (475)
Q Consensus       236 ~c  237 (475)
                      ++
T Consensus       246 ~N  247 (317)
T 3o53_A          246 GN  247 (317)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=2.6e-19  Score=171.64  Aligned_cols=206  Identities=22%  Similarity=0.280  Sum_probs=152.3

Q ss_pred             cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcc-cCCCCC
Q 011891           12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSR   90 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~   90 (475)
                      ....+++|+.|+++++. ++.++   .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++.. +..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~-i~~~~---~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSD-IKSVQ---GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             CHHHHTTCCEEECTTSC-CCCCT---TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccccccceeeeeeCCCC-ccccc---ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            34567888888888864 45444   4677888888888885 466677788888888888888888877654 578888


Q ss_pred             CcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecC
Q 011891           91 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD  169 (475)
Q Consensus        91 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~  169 (475)
                      |++|++++|......+..+..+++|++|++++|.++.++.. +..+++|+.|++++|......+..+.++++|+.|++++
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            88888888764444444567888888888888888877664 57788888888888864433333457788888888888


Q ss_pred             CCCCCcch-hhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCccC
Q 011891          170 CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCN  228 (475)
Q Consensus       170 ~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~  228 (475)
                      |++++++. .+..+++|+.|++++|.+.      +.+++|+.|++..|.....+|.....
T Consensus       191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence            88888554 4678888888888888765      23567888888877666666654333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=3.3e-19  Score=188.53  Aligned_cols=133  Identities=18%  Similarity=0.104  Sum_probs=102.0

Q ss_pred             CCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEEcCCCCCCC--ccccCCCCCCCCCEEEecCCCCCC-cchh-hCCCCC
Q 011891          110 CKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCAITE-LPES-LGLLSS  184 (475)
Q Consensus       110 ~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~--~l~~~~~~l~~L~~L~L~~~~l~~-lp~~-l~~l~~  184 (475)
                      ..+++|++|++++|.++. +|..+..+++|+.|++++|....  .+|..+.++++|+.|++++|.+++ +|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            567889999999999885 67788999999999999987433  334557888999999999999988 7754 677889


Q ss_pred             CceeEeccCCcc-ccchHHhhcCCcccccccccccccccCCC---ccCcceecccccccCccccCC
Q 011891          185 LEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSGL  246 (475)
Q Consensus       185 L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c~~L~~l~~~  246 (475)
                      |+.|++++|+++ .+|..+.  ++|+.|++++| .++.+|.-   .++|+.|+++++ .++.++..
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~  491 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG  491 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence            999999999885 3443322  68999999988 56677652   367888888876 46666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=3.7e-21  Score=188.72  Aligned_cols=231  Identities=14%  Similarity=0.087  Sum_probs=182.7

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~   79 (475)
                      |++|+|+.++ ..+..+++|++|+|++|. ++..+.   +..+++|++|++++| .+..++   ..++|++|++++|.++
T Consensus        41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNIS  112 (317)
T ss_dssp             CTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCS
T ss_pred             CcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC-cccccc---CCCCcCEEECCCCccC
Confidence            5678888886 678999999999999975 444432   778999999999996 344444   4489999999999999


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC-ccc-CCCCCcCEEEcCCCCCCCccccCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPI-ECLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      .++..  .+++|++|++++|......+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|. +..++.. .
T Consensus       113 ~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~  188 (317)
T 3o53_A          113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-V  188 (317)
T ss_dssp             EEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-C
T ss_pred             CcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-c
Confidence            87654  4789999999998665555667888999999999999998754 344 468999999999987 4444433 3


Q ss_pred             CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccc-cccCCC---ccCcceec
Q 011891          158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL-QSLPKL---PCNLYWLD  233 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l-~~lp~l---~~~L~~L~  233 (475)
                      .+++|+.|++++|.++++|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|+.. ..+|..   .+.|+.++
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            58899999999999999888889999999999999999999988889999999999998754 333332   34567777


Q ss_pred             ccccccCccc
Q 011891          234 AQHCTTLESL  243 (475)
Q Consensus       234 i~~c~~L~~l  243 (475)
                      +.++..++..
T Consensus       269 l~~~~~l~~~  278 (317)
T 3o53_A          269 KQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHSS
T ss_pred             CCCchhccCC
Confidence            7766655544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=9.2e-20  Score=171.22  Aligned_cols=204  Identities=16%  Similarity=0.202  Sum_probs=169.6

Q ss_pred             CcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccc-cCCccc
Q 011891            5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEEL   81 (475)
Q Consensus         5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~-~~i~~l   81 (475)
                      +++++|. +  .++|++|+++++ .++.+|. ..+.++++|++|++++|..++.++.  +..+++|++|++++ |.++.+
T Consensus        22 ~l~~ip~-~--~~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           22 DIQRIPS-L--PPSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             SCSSCCC-C--CTTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             CccccCC-C--CCcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            4677776 3  348999999996 4666664 4578899999999999766888775  77999999999998 999988


Q ss_pred             Cc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCc---EEEeeCc-CCccCCcc-cCCCCCcC-EEEcCCCCCCCcccc
Q 011891           82 PS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE---EICLTGS-AIEELPSP-IECLSALC-VLDLGDCKSLKSLKL  154 (475)
Q Consensus        82 p~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~L~~c~~l~~l~~  154 (475)
                      +. .+..+++|++|++++|. ++.+|. +..+++|+   +|++++| .++.+|.. +..+++|+ .|++++|.. ..+|.
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~  173 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG  173 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECT
T ss_pred             CHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCH
Confidence            75 67899999999999975 566886 88888888   9999999 99988764 88899999 999999874 46665


Q ss_pred             CCCCCCCCCEEEecCCC-CCCcc-hhhCCC-CCCceeEeccCCccccchHHhhcCCccccccccccc
Q 011891          155 PFDGLYSLTYLYLTDCA-ITELP-ESLGLL-SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER  218 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~~~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~  218 (475)
                      .....++|+.|++++|. ++.+| ..+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++..
T Consensus       174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence            54344889999999995 99875 557888 9999999999999999865  789999999988754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=1e-18  Score=167.27  Aligned_cols=193  Identities=29%  Similarity=0.406  Sum_probs=157.1

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCccc-CCCCCCcE
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSI-GCLSRLLE   93 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~   93 (475)
                      .+++.+++++ ..++.+|.  .+  .++|+.|+|++| .+..+|.  +..+++|++|++++|.++.++..+ ..+++|++
T Consensus        16 ~~~~~l~~~~-~~l~~ip~--~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           16 NNKNSVDCSS-KKLTAIPS--NI--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTTEEECTT-SCCSSCCS--CC--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCCEEEccC-CCCCccCC--CC--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            3578899988 46778875  22  267999999995 4666664  788999999999999999888754 78999999


Q ss_pred             EeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCC
Q 011891           94 LNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDC  170 (475)
Q Consensus        94 L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~  170 (475)
                      |++++|.. ..+| ..+..+++|++|++++|.++.++. .+..+++|++|++++|.. ..++. .+..+++|+.|++++|
T Consensus        90 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           90 LWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EECCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCC
Confidence            99999764 4454 456889999999999999998765 468899999999999874 44444 4688999999999999


Q ss_pred             CCCCcch-hhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891          171 AITELPE-SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       171 ~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~  217 (475)
                      .++.++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            9999765 47889999999999999988875 47789999999999885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=6.7e-20  Score=193.71  Aligned_cols=201  Identities=19%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---------------------cCCCCCC
Q 011891           10 SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---------------------ISSAGNI   68 (475)
Q Consensus        10 ~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---------------------i~~l~~L   68 (475)
                      ++.+..+++|+.|++++|. ++.+|.  .+..+ +|+.|++++|. +..+|.                     ...+++|
T Consensus       275 ~~~~~~l~~L~~L~l~~~~-l~~l~~--~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L  349 (570)
T 2z63_A          275 IDLFNCLTNVSSFSLVSVT-IERVKD--FSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL  349 (570)
T ss_dssp             TTTTGGGTTCSEEEEESCE-ECSCCB--CCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred             hhhhcCcCcccEEEecCcc-chhhhh--hhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCC
Confidence            3445566666666666643 344443  23444 56666666542 334443                     1334445


Q ss_pred             cEEEccccCCccc---CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc--ccCCCCCcCEEEc
Q 011891           69 EKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDL  143 (475)
Q Consensus        69 ~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L  143 (475)
                      ++|++++|.+..+   +..+..+++|++|++++|. +..+|..+..+++|++|++++|.+...+.  .+..+++|+.|++
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            5555555444432   3344444555555555432 22333334445555555555554443322  3444555555555


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcccc-chHHhhcCCccccccccc
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c  216 (475)
                      ++|......+..+.++++|+.|++++|.+++  +|..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            5554433344444445555555555555441  444455555555555555555433 344445555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=1e-18  Score=167.26  Aligned_cols=168  Identities=32%  Similarity=0.463  Sum_probs=95.2

Q ss_pred             CcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEee
Q 011891           45 LVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLT  121 (475)
Q Consensus        45 L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~  121 (475)
                      ++.+++++ ..++.+|. +.  ++|++|++++|.++.++. .+.++++|++|++++|. ++.+|.. +..+++|++|+++
T Consensus        18 ~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccC-CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence            45566655 34555554 32  456666666666665554 45566666666666643 3344433 3556666666666


Q ss_pred             CcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccc
Q 011891          122 GSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       122 ~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      +|.++.+|.. +..+++|++|++++|......+..+..+++|+.|++++|.++++|.. +..+++|+.|++++|.++.++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            6666655543 35566666666666553333333345566666666666666665433 455666666666666666555


Q ss_pred             h-HHhhcCCccccccccc
Q 011891          200 E-SIIRLSKLSSLLVSYC  216 (475)
Q Consensus       200 ~-~i~~l~~L~~L~l~~c  216 (475)
                      . .+..+++|+.|++++|
T Consensus       174 ~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             TTTTTTCTTCCEEECCSS
T ss_pred             hhHhccCCCcCEEECCCC
Confidence            3 3555666666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=197.38  Aligned_cols=124  Identities=17%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             CCCCcccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCc
Q 011891            2 PHSNIEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         2 ~~s~l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~   79 (475)
                      ++|+|+.+ +..+..+++|++|+|++|.....++. ..+.++++|++|+|++|......|. +..+++|++|+|++|.+.
T Consensus        32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~  110 (844)
T 3j0a_A           32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS  110 (844)
T ss_dssp             ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred             CCCcCCccChhHCcccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC
Confidence            45666666 35677777777777777755555532 3567777777777777543333354 667777777777777776


Q ss_pred             c-cCcc--cCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCc
Q 011891           80 E-LPSS--IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIE  126 (475)
Q Consensus        80 ~-lp~~--i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~  126 (475)
                      . +|..  ++++++|++|++++|......+ ..++++++|++|++++|.++
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            4 4443  6777777777777765444332 45677777777777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=5.7e-20  Score=190.93  Aligned_cols=218  Identities=16%  Similarity=0.144  Sum_probs=172.5

Q ss_pred             cccccccCC----CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCc
Q 011891            8 QLSESVQHH----GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPS   83 (475)
Q Consensus         8 ~L~~~~~~l----~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~   83 (475)
                      .++.++..+    ++|+.|+|++|. ++.++. ..+.++++|++|+|++|. +...+++..+++|++|+|++|.++.+|.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCC
Confidence            344444444    489999999974 555543 467899999999999964 5555558899999999999999988774


Q ss_pred             ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCCC-CCCC
Q 011891           84 SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD-GLYS  161 (475)
Q Consensus        84 ~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~~-~l~~  161 (475)
                          .++|++|++++|... .++.  ..+++|+.|++++|.++.+ |..+..+++|+.|++++|......|..+. .+++
T Consensus        98 ----~~~L~~L~L~~N~l~-~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           98 ----GPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             ----CTTCCEEECCSSCCC-CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ----CCCcCEEECcCCcCC-CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence                389999999997644 4443  3468899999999999976 55788899999999999986665665554 7899


Q ss_pred             CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceeccccc
Q 011891          162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  237 (475)
Q Consensus       162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c  237 (475)
                      |+.|+|++|.++++|. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|..   .++|+.|+++++
T Consensus       171 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          171 LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTC
T ss_pred             ccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCC
Confidence            9999999999999865 346999999999999999998889999999999999984 5556642   245666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=4.5e-19  Score=191.67  Aligned_cols=145  Identities=22%  Similarity=0.298  Sum_probs=102.9

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++++++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|+|++| .+..+|.  ++.+++|++|++++|.
T Consensus        32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           32 LTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             CCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCH-HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc
Confidence            45667777764 47778888888888764 344432 35667788888888885 5666665  7788888888888888


Q ss_pred             CcccC-cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc---cCCCCCcCEEEcCCCCC
Q 011891           78 IEELP-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP---IECLSALCVLDLGDCKS  148 (475)
Q Consensus        78 i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~---i~~l~~L~~L~L~~c~~  148 (475)
                      +..++ ..++++++|++|++++|......|..++++++|++|++++|.++.++..   ...+++|+.|++++|..
T Consensus       109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            87766 4677888888888888766556666677788888888888877766543   23456777777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1e-18  Score=179.92  Aligned_cols=209  Identities=26%  Similarity=0.346  Sum_probs=113.3

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l   81 (475)
                      .+++++.+|..   .++|++|++++| .++.+|.     .+++|++|++++| .+..+|.+.  ++|++|++++|.++.+
T Consensus        79 ~~~~l~~lp~~---~~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~~~--~~L~~L~L~~n~l~~l  146 (454)
T 1jl5_A           79 NNLGLSSLPEL---PPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNNQLEKL  146 (454)
T ss_dssp             TTSCCSCCCSC---CTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSSCCSSC
T ss_pred             cCCccccCCCC---cCCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccCCC--CCCCEEECcCCCCCCC
Confidence            45556665542   356777777764 3444553     1255666666664 344444322  4666666666666666


Q ss_pred             CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCC
Q 011891           82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS  161 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~  161 (475)
                      | .++++++|++|++++|. ++.+|..+   .+|++|++++|.++.+| .+..+++|+.|++++|.. ..+|..   .++
T Consensus       147 p-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~  216 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL---PLS  216 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CTT
T ss_pred             c-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC---cCc
Confidence            5 36666666666666653 33455432   35666666666666655 455666666666666542 223321   235


Q ss_pred             CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCccCcceeccccc
Q 011891          162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC  237 (475)
Q Consensus       162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c  237 (475)
                      |+.|++++|.++++|. ++.+++|+.|++++|+++.+|..   +++|+.|++++|. ++.+|..+++|+.|+++++
T Consensus       217 L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             ccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence            5566666665555553 55555566666666555555532   2455555555542 3345554555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=5.1e-19  Score=172.78  Aligned_cols=187  Identities=22%  Similarity=0.293  Sum_probs=162.8

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +.+++++.++ ++..+++|++|+|++| .++.++.   +.++++|++|++++| .+..++.+..+++|++|++++|.++.
T Consensus        48 l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           48 AFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             CTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSCCCC
T ss_pred             eeCCCccCch-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCCCCCC
Confidence            4567888886 7899999999999997 5566654   788999999999996 47888889999999999999999998


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  160 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~  160 (475)
                      ++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.. ..++. +..++
T Consensus       122 ~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~  195 (308)
T 1h6u_A          122 VTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDISP-LASLP  195 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCT
T ss_pred             chh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcChh-hcCCC
Confidence            875 8899999999999975 556665 8899999999999999998877 89999999999999974 44443 67899


Q ss_pred             CCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch
Q 011891          161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE  200 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~  200 (475)
                      +|+.|++++|.+++++. +..+++|+.|++++|.++..|.
T Consensus       196 ~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          196 NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            99999999999999874 8999999999999999987663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=9e-19  Score=169.54  Aligned_cols=190  Identities=19%  Similarity=0.217  Sum_probs=162.9

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +.+++++.+|.++.  ++++.|+|++|. ++.++. ..+.++++|++|+|++| .+..++..+.+++|++|++++|.++.
T Consensus        17 ~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~   91 (290)
T 1p9a_G           17 CDKRNLTALPPDLP--KDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQS   91 (290)
T ss_dssp             CTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSS
T ss_pred             CCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCCcCCc
Confidence            35678888987764  799999999975 444432 46788999999999995 57778777899999999999999999


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccC-CCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDG  158 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~-~~~  158 (475)
                      +|..+..+++|++|++++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +..+|.. +.+
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~  170 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG  170 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcC
Confidence            999999999999999999754443446789999999999999999988875 5789999999999997 4556544 578


Q ss_pred             CCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          159 LYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +++|+.|+|++|.++.+|..+....+|+.|+|++|.+.
T Consensus       171 l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99999999999999999999999999999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=2.6e-19  Score=189.16  Aligned_cols=124  Identities=24%  Similarity=0.383  Sum_probs=60.3

Q ss_pred             CCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccCC
Q 011891            2 PHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAI   78 (475)
Q Consensus         2 ~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~i   78 (475)
                      ++|+++.++. .+..+++|++|+|++|. ++.++. ..+.++++|++|+|++|. +..+| . ++.+++|++|++++|.+
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  112 (570)
T 2z63_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL  112 (570)
T ss_dssp             CSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCccChhHhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccccc
Confidence            3444444432 44555555555555542 333322 234455555555555532 33332 2 44555555555555555


Q ss_pred             cccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCccC
Q 011891           79 EELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEEL  128 (475)
Q Consensus        79 ~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~l  128 (475)
                      +.++. .++++++|++|++++|.... .+|..++++++|++|++++|.++.+
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            54443 35555555555555543322 2455555555555555555555433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=1.1e-18  Score=188.52  Aligned_cols=245  Identities=23%  Similarity=0.246  Sum_probs=171.5

Q ss_pred             cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCC-CCCCcC--cC--CCCCCcEEEccccCCccc-Cccc
Q 011891           12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE--IS--SAGNIEKILLDGTAIEEL-PSSI   85 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~-l~~~p~--i~--~l~~L~~L~L~~~~i~~l-p~~i   85 (475)
                      .++.+++|++|++++|. ++.++. ..+.++++|++|++++|.. +..++.  +.  ..++|+.|++++|.+..+ |..+
T Consensus       324 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~  401 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF  401 (680)
T ss_dssp             TTTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred             hcccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence            67889999999999875 444443 4577889999999998742 333333  22  235788888888888865 4567


Q ss_pred             CCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCC--CCccccCCCCCCC
Q 011891           86 GCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKS--LKSLKLPFDGLYS  161 (475)
Q Consensus        86 ~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~--l~~l~~~~~~l~~  161 (475)
                      ..+++|++|++++|.....+| ..+..+++|++|++++|.+..++ ..+..+++|+.|++++|..  +..+|..+.++++
T Consensus       402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence            788888888888877655565 56778888888888888877553 4577788888888888764  2456666778888


Q ss_pred             CCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccccch---------HHhhcCCcccccccccccccccCC--C--cc
Q 011891          162 LTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE---------SIIRLSKLSSLLVSYCERLQSLPK--L--PC  227 (475)
Q Consensus       162 L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L~l~~c~~l~~lp~--l--~~  227 (475)
                      |+.|++++|+++.++. .+..+++|+.|++++|+++.++.         .+..+++|+.|++++| .++.+|.  +  .+
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLF  560 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHccccc
Confidence            8888888888887654 46778888888888888765432         2577788888888877 4556663  1  35


Q ss_pred             CcceecccccccCccccCCCC-C-cceeEEEecCC
Q 011891          228 NLYWLDAQHCTTLESLSGLFS-S-YKCVFFYLNEN  260 (475)
Q Consensus       228 ~L~~L~i~~c~~L~~l~~~~~-~-~~~~~l~~~~c  260 (475)
                      +|+.|+++++ .++.++.... . .....+.+.++
T Consensus       561 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            6777777654 4665554321 1 23445666555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=7e-20  Score=190.29  Aligned_cols=207  Identities=14%  Similarity=0.064  Sum_probs=173.7

Q ss_pred             CCCCCccccc-ccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCc
Q 011891            1 MPHSNIEQLS-ESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIE   79 (475)
Q Consensus         1 l~~s~l~~L~-~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~   79 (475)
                      |++|+|..++ ..+..+++|++|+|++|. ++..+.   +..+++|++|+|++| .+..+|   ..++|++|++++|.+.
T Consensus        41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNIS  112 (487)
T ss_dssp             CCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCC
T ss_pred             eeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCCC---CCCCcCEEECcCCcCC
Confidence            5678888886 689999999999999975 444432   778999999999996 455544   3489999999999999


Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccC-CCCCcCEEEcCCCCCCCccccCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIE-CLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~-~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      .++..  .+++|++|++++|......|..++.+++|++|++++|.++. .|..+. .+++|+.|++++|.. ..++. ..
T Consensus       113 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~-~~  188 (487)
T 3oja_A          113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QV  188 (487)
T ss_dssp             CEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEEC-CC
T ss_pred             CCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccccc-cc
Confidence            87754  57899999999987766667788899999999999999996 455554 789999999999984 44443 34


Q ss_pred             CCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccc
Q 011891          158 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL  219 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l  219 (475)
                      .+++|+.|+|++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            68999999999999999888899999999999999999999988999999999999998654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=6.1e-19  Score=195.30  Aligned_cols=96  Identities=18%  Similarity=0.239  Sum_probs=60.1

Q ss_pred             cccc-cccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC---cCCCCCCcEEEccccCCccc
Q 011891            6 IEQL-SESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         6 l~~L-~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~---i~~l~~L~~L~L~~~~i~~l   81 (475)
                      +..+ ++.++++++|++|+|++|..-...|  ..+.++++|++|+|++|.....+|.   +..+++|++|+|++|.+..+
T Consensus        61 ~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             CCEECTTTTSSCTTCCEEECTTCCCCEECT--TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             ccccCHHHhcCCCCCCEEECCCCcCcccCH--hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            3344 4567777777777777764333323  3566777777777777644443443   56777777777777777654


Q ss_pred             C--cccCCCCCCcEEeeeCCCCCC
Q 011891           82 P--SSIGCLSRLLELNLGDCKNLK  103 (475)
Q Consensus        82 p--~~i~~l~~L~~L~L~~c~~l~  103 (475)
                      +  ..++++++|++|++++|....
T Consensus       139 ~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          139 YLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             ccchhHhhCCCCCEEECCCCcCCe
Confidence            2  456777777777777765433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=2e-18  Score=183.64  Aligned_cols=208  Identities=25%  Similarity=0.295  Sum_probs=151.4

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++|+|+.+|.   .+++|++|+|++|. ++.+|.     .+++|++|+|++| .+..+|.  .+++|+.|++++|.++.
T Consensus        68 L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~l~~  135 (622)
T 3g06_A           68 IPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQLTS  135 (622)
T ss_dssp             ECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSCCSC
T ss_pred             ecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCCCCc
Confidence            46788888887   57899999999974 677774     5688899999885 5666766  55777777777777777


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccC-----------------CCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLC-----------------KLKSLEEICLTGSAIEELPSPIECLSALCVLDL  143 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~-----------------~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L  143 (475)
                      +|..   +++|++|++++|. +..+|..+.                 .+++|+.|++++|.++.+|..   +++|+.|++
T Consensus       136 lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L  208 (622)
T 3g06_A          136 LPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWA  208 (622)
T ss_dssp             CCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred             CCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEEC
Confidence            7763   3677777777753 334433222                 237788889998888887764   468888888


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      ++|. +..+|.   .+++|+.|++++|.++.+|   ..+++|+.|++++|+++.+|.   .+++|+.|++++| .++.+|
T Consensus       209 ~~N~-l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp  277 (622)
T 3g06_A          209 YNNR-LTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLP  277 (622)
T ss_dssp             CSSC-CSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCC
T ss_pred             cCCc-ccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCC
Confidence            8876 445553   3577888888888888887   466888888888888888886   5788888888887 455666


Q ss_pred             CC---ccCcceecccccc
Q 011891          224 KL---PCNLYWLDAQHCT  238 (475)
Q Consensus       224 ~l---~~~L~~L~i~~c~  238 (475)
                      ..   .++|+.|++++++
T Consensus       278 ~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          278 ESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             GGGGGSCTTCEEECCSCC
T ss_pred             HHHhhccccCEEEecCCC
Confidence            42   2556667776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=8.9e-19  Score=167.90  Aligned_cols=211  Identities=21%  Similarity=0.254  Sum_probs=166.1

Q ss_pred             CCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEe
Q 011891           16 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   95 (475)
Q Consensus        16 l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   95 (475)
                      +.++..+++.++ .+..   ......+++|+.|++++| .+..++.+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus        18 ~~~l~~l~l~~~-~~~~---~~~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKK-SVTD---AVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCS-CTTS---EECHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCc-cccc---ccccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEE
Confidence            344555566553 2222   234567889999999995 5778888999999999999999999865 788999999999


Q ss_pred             eeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891           96 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus        96 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      +++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+.++++|+.|++++|++++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            999865444445578999999999999999988765 6889999999999997443333345889999999999999999


Q ss_pred             cchh-hCCCCCCceeEeccCCccccch-HHhhcCCcccccccccccccccCCCccCcceecccc
Q 011891          175 LPES-LGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQH  236 (475)
Q Consensus       175 lp~~-l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~  236 (475)
                      ++.. ++.+++|+.|++++|+++.++. .+..+++|+.|++++|+.....    +.++.|++..
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~  231 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWI  231 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHH
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHH
Confidence            6554 6889999999999999987774 4688999999999998644332    3455555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=3.4e-18  Score=182.46  Aligned_cols=123  Identities=24%  Similarity=0.367  Sum_probs=102.4

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++|+|+.++. .+.++++|++|+|++| .++.+++ ..+.++++|++|+|++| .++.+|.  +..+++|++|+|++|.
T Consensus        59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSC
T ss_pred             eeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcCh-hHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCc
Confidence            57899999984 6899999999999997 4666654 45788999999999996 5777775  7899999999999999


Q ss_pred             CcccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCc
Q 011891           78 IEELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIE  126 (475)
Q Consensus        78 i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~  126 (475)
                      ++.++. .++++++|++|++++|.... .+|..++.+++|++|++++|.++
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            998876 58899999999999976433 46778888999999998887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=175.74  Aligned_cols=216  Identities=14%  Similarity=0.071  Sum_probs=137.6

Q ss_pred             CCcEEeccCCCCccC-CCChhhccCCCCCcEEEEeCCCCCCCCcC-c--CCCCCCcEEEccccCCccc-C----cccCCC
Q 011891           18 KLNQIIMAACNIFTK-TPNPSLIQHLNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEEL-P----SSIGCL   88 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~-~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i--~~l~~L~~L~L~~~~i~~l-p----~~i~~l   88 (475)
                      .++.+.+.++..-.. +........+++|++|++++|...+..|. +  ..+++|++|++++|.+... +    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            456677766432110 00011122345688888888765555555 4  6778888888888877742 2    233467


Q ss_pred             CCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc---CC--cccCCCCCcCEEEcCCCCCCCccccC----CCCC
Q 011891           89 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE---LP--SPIECLSALCVLDLGDCKSLKSLKLP----FDGL  159 (475)
Q Consensus        89 ~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~L~~c~~l~~l~~~----~~~l  159 (475)
                      ++|++|++++|......|..++.+++|++|++++|.+..   ++  ..+..+++|++|++++|.. +.++..    +..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence            788888888876655555677778888888888887652   32  2335677888888888763 333321    3466


Q ss_pred             CCCCEEEecCCCCCCc-chhhCCC---CCCceeEeccCCccccchHHhhcCCcccccccccccccccCC--CccCcceec
Q 011891          160 YSLTYLYLTDCAITEL-PESLGLL---SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK--LPCNLYWLD  233 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~l-p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~--l~~~L~~L~  233 (475)
                      ++|+.|+|++|.++++ |..+..+   ++|++|++++|+++.+|..+.  ++|+.|++++|+ ++.+|.  -.++|+.|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEE
Confidence            7788888888888774 6665555   588888888888887776553  788888888774 444432  235666666


Q ss_pred             cccc
Q 011891          234 AQHC  237 (475)
Q Consensus       234 i~~c  237 (475)
                      +++.
T Consensus       301 L~~N  304 (310)
T 4glp_A          301 LDGN  304 (310)
T ss_dssp             CSST
T ss_pred             CcCC
Confidence            6554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=2.2e-18  Score=165.36  Aligned_cols=192  Identities=22%  Similarity=0.332  Sum_probs=157.8

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCc-C-cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~~l~~L~~L~L~~~~   77 (475)
                      |++|+++.++. .+..+++|++|++++| .++.++. ..+.++++|++|++++|. +..++ . +..+++|++|++++|.
T Consensus        35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  111 (276)
T 2z62_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN  111 (276)
T ss_dssp             CTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCcccccCHhHhccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC
Confidence            46788888875 7889999999999997 4555553 357889999999999964 55554 3 7899999999999999


Q ss_pred             CcccCc-ccCCCCCCcEEeeeCCCCCC-ccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcC----EEEcCCCCCCC
Q 011891           78 IEELPS-SIGCLSRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALC----VLDLGDCKSLK  150 (475)
Q Consensus        78 i~~lp~-~i~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~L~~c~~l~  150 (475)
                      +..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|.++.++. .+..+.+|+    .|++++|.. .
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~  190 (276)
T 2z62_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-N  190 (276)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC-C
T ss_pred             ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc-c
Confidence            998766 68899999999999976544 378899999999999999999997764 555555555    899999874 4


Q ss_pred             ccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCcc
Q 011891          151 SLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE  196 (475)
Q Consensus       151 ~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~  196 (475)
                      .++.......+|+.|++++|.++++|.. +..+++|+.|++++|++.
T Consensus       191 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          191 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            4554444556899999999999997765 588999999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=2.6e-18  Score=170.77  Aligned_cols=226  Identities=15%  Similarity=0.135  Sum_probs=174.0

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcE-EEccccCCc
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEK-ILLDGTAIE   79 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~-L~L~~~~i~   79 (475)
                      +++++++|.++  .+++++|+|++| .++.+|. ..+.++++|++|+|++|..++.+|.  +..+++|++ +.+.+|.++
T Consensus        18 ~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           18 ESKVTEIPSDL--PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             STTCCSCCTTC--CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCCCccCcCc--CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            56788999876  478999999995 5777775 3578899999999999877777775  678888776 566778999


Q ss_pred             ccC-cccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeC-cCCccCCcc-cCCC-CCcCEEEcCCCCCCCcccc
Q 011891           80 ELP-SSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPSP-IECL-SALCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        80 ~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~~-i~~l-~~L~~L~L~~c~~l~~l~~  154 (475)
                      .++ ..+..+++|++|++++|.. ..+| .......++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~  171 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHN  171 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECT
T ss_pred             ccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCCh
Confidence            885 4678999999999999754 4444 3445667788898876 577777653 4444 468899999887 556666


Q ss_pred             CCCCCCCCCEEEecC-CCCCCcch-hhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcc
Q 011891          155 PFDGLYSLTYLYLTD-CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLY  230 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~-~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~  230 (475)
                      ......+|+.|++.+ +.++.+|. .+..+++|+.|++++|+++.+|..  .+.+|+.|.+.++..++.+|.+  .++|+
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~  249 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALM  249 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred             hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChh
Confidence            655667899999985 56777876 468899999999999999999853  3677888888888888888864  35677


Q ss_pred             eecccc
Q 011891          231 WLDAQH  236 (475)
Q Consensus       231 ~L~i~~  236 (475)
                      .+++.+
T Consensus       250 ~l~l~~  255 (350)
T 4ay9_X          250 EASLTY  255 (350)
T ss_dssp             EEECSC
T ss_pred             hCcCCC
Confidence            776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1e-17  Score=166.50  Aligned_cols=219  Identities=24%  Similarity=0.332  Sum_probs=179.2

Q ss_pred             cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCc-ccCc-ccCCCCCCcEEe
Q 011891           20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPS-SIGCLSRLLELN   95 (475)
Q Consensus        20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~-~lp~-~i~~l~~L~~L~   95 (475)
                      ++++.++ +.++++|.  .+  .+++++|+|++ +.++.+|.  +..+++|++|+|++|.+. .+|. .+.++++|.++.
T Consensus        12 ~~v~C~~-~~Lt~iP~--~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPS--DL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEES-TTCCSCCT--TC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecC-CCCCccCc--Cc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            5666665 57888885  23  36799999999 56888886  789999999999999975 4665 568899988876


Q ss_pred             eeCCCCCCcc-ccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccC-CCCC-CCCCEEEecCCC
Q 011891           96 LGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLP-FDGL-YSLTYLYLTDCA  171 (475)
Q Consensus        96 L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~-~~~l-~~L~~L~L~~~~  171 (475)
                      +.+++.+..+ |..+..+++|++|++++|.++.+|. .+....++..|++.++..+..++.. +.++ ..++.|++++|+
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            6666677777 4567899999999999999998876 3456678889999888878777653 3444 468999999999


Q ss_pred             CCCcchhhCCCCCCceeEecc-CCccccch-HHhhcCCcccccccccccccccCC-CccCcceecccccccCccccC
Q 011891          172 ITELPESLGLLSSLEELYLER-NNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       172 l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      ++++|.......+|+.|++.+ |.++.+|. .++.+++|+.|++++| .++.+|. ...+|+.|.+.++..|+.++.
T Consensus       166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred             ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence            999988888888999999985 67889985 5689999999999998 6888875 578899999999999998885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=7.3e-18  Score=163.23  Aligned_cols=170  Identities=27%  Similarity=0.375  Sum_probs=137.1

Q ss_pred             ccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEE
Q 011891           39 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI  118 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L  118 (475)
                      ...+++|+.|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+|. +..+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEE
Confidence            445677888888885 56777777788888888888888887776 7888888888888864 555554 7888888888


Q ss_pred             EeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcccc
Q 011891          119 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI  198 (475)
Q Consensus       119 ~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l  198 (475)
                      ++++|.++.+ +.+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+
T Consensus       118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          118 SLEHNGISDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             ECTTSCCCCC-GGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             ECCCCcCCCC-hhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence            8888888876 4577888888998888864 334 356788899999999999998766 88899999999999999888


Q ss_pred             chHHhhcCCcccccccccc
Q 011891          199 PESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       199 p~~i~~l~~L~~L~l~~c~  217 (475)
                      +. +..+++|+.|++++|+
T Consensus       194 ~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 RA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GG-GTTCTTCSEEEEEEEE
T ss_pred             hh-hccCCCCCEEECcCCc
Confidence            74 8889999999999885

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=2.5e-17  Score=155.74  Aligned_cols=173  Identities=21%  Similarity=0.303  Sum_probs=107.6

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCc-ccCCCCCCcE
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLE   93 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~   93 (475)
                      ...+.+++++ ..++.+|.  .+.  +.|+.|+|++|. +..++.  +..+++|++|+|++|.++.++. .+..+++|++
T Consensus        14 ~~~~~l~~~~-~~l~~~p~--~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSVPS--GIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGGTEEECTT-CCCSSCCS--CCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCeEEecCC-CCccccCC--CCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            4566777776 45666664  222  567777777754 444432  6677777777777777776544 3566777777


Q ss_pred             EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCC
Q 011891           94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~  171 (475)
                      |++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.. ..++. .+.++++|+.|+|++|.
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCc
Confidence            77777554333334456677777777777777766654 45666677777766653 33333 45566666666666666


Q ss_pred             CCCcch-hhCCCCCCceeEeccCCcc
Q 011891          172 ITELPE-SLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       172 l~~lp~-~l~~l~~L~~L~L~~n~l~  196 (475)
                      ++.++. .+..+++|+.|++++|++.
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCcee
Confidence            666443 4556666666666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=1e-19  Score=179.40  Aligned_cols=215  Identities=18%  Similarity=0.205  Sum_probs=133.9

Q ss_pred             CCcEEeccCCCCccCCCChhhccCC--CCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc--cCcccCCCCCCcE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHL--NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE--LPSSIGCLSRLLE   93 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l--~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~   93 (475)
                      .++.++++++.. .    ...+..+  +.++.|+++++..-...+.+..+++|++|++++|.+..  ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            366777776432 1    1234444  66777777775443344445667777777777776652  5666677777777


Q ss_pred             EeeeCCCCCCccccccCCCCCCcEEEeeCc-CCc--cCCcccCCCCCcCEEEcCCCCCCCc--cccCCCCCC-CCCEEEe
Q 011891           94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIE--ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLY-SLTYLYL  167 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~L~~c~~l~~--l~~~~~~l~-~L~~L~L  167 (475)
                      |++++|......+..++.+++|++|++++| .++  .++..+..+++|++|++++|..+..  ++..+..++ +|+.|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777777544456666677777777777777 555  3555566677777777777743442  343445666 7777777


Q ss_pred             cCC--CCCC--cchhhCCCCCCceeEeccCC-cc-ccchHHhhcCCccccccccccccccc--CC--CccCcceeccccc
Q 011891          168 TDC--AITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQSL--PK--LPCNLYWLDAQHC  237 (475)
Q Consensus       168 ~~~--~l~~--lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~l~~c~~l~~l--p~--l~~~L~~L~i~~c  237 (475)
                      ++|  .+++  +|..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|..+..-  ..  -.++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            777  4442  56666667777777777777 43 44556677777777777777532211  01  1356777777766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.5e-17  Score=159.50  Aligned_cols=175  Identities=26%  Similarity=0.354  Sum_probs=151.8

Q ss_pred             ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCc
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL   92 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~   92 (475)
                      ...+++|+.|++++| .++.++   .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++. +..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~---~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred             hhhcCcccEEEccCC-CcccCh---hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            457899999999996 456665   3778999999999996 57777779999999999999999998765 88999999


Q ss_pred             EEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC
Q 011891           93 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  172 (475)
Q Consensus        93 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l  172 (475)
                      +|++++|. +..++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|.+
T Consensus       116 ~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          116 SLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEEECCCCcC
Confidence            99999975 55564 688999999999999999988 6788999999999999974 44443 78899999999999999


Q ss_pred             CCcchhhCCCCCCceeEeccCCccccc
Q 011891          173 TELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       173 ~~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      ++++. +..+++|+.|++++|+++..|
T Consensus       191 ~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          191 SDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             CCChh-hccCCCCCEEECcCCcccCCc
Confidence            99875 899999999999999987655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=1.2e-19  Score=182.74  Aligned_cols=233  Identities=18%  Similarity=0.177  Sum_probs=174.7

Q ss_pred             CcccccccccCCCCCcEEeccCCCCccCCCC--hhhccCCCCCcEEEEeCCC--CCC-CCcC-c-------CCCCCCcEE
Q 011891            5 NIEQLSESVQHHGKLNQIIMAACNIFTKTPN--PSLIQHLNKLVILNLSGCS--KLK-SLPE-I-------SSAGNIEKI   71 (475)
Q Consensus         5 ~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~--~~~~~~l~~L~~L~L~~c~--~l~-~~p~-i-------~~l~~L~~L   71 (475)
                      .++.+...+..+++|++|+|++|..-...+.  ...+.++++|++|+|++|.  .+. .+|. +       ..+++|++|
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            4556777888999999999999743222111  1236689999999999973  222 2343 3       688999999


Q ss_pred             EccccCCcc-----cCcccCCCCCCcEEeeeCCCCCC----ccccccCCC---------CCCcEEEeeCcCCc--cCC--
Q 011891           72 LLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKL---------KSLEEICLTGSAIE--ELP--  129 (475)
Q Consensus        72 ~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~l---------~~L~~L~l~~~~i~--~lp--  129 (475)
                      +|++|.+..     ++..+..+++|++|+|++|....    .++..+..+         ++|++|++++|.++  .++  
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence            999999885     77788899999999999987532    233334444         89999999999987  444  


Q ss_pred             -cccCCCCCcCEEEcCCCCCCC-----ccccCCCCCCCCCEEEecCCCCC-----CcchhhCCCCCCceeEeccCCccc-
Q 011891          130 -SPIECLSALCVLDLGDCKSLK-----SLKLPFDGLYSLTYLYLTDCAIT-----ELPESLGLLSSLEELYLERNNFER-  197 (475)
Q Consensus       130 -~~i~~l~~L~~L~L~~c~~l~-----~l~~~~~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~L~~n~l~~-  197 (475)
                       ..+..+++|+.|++++|....     ..+..+..+++|+.|+|++|.++     .+|..+..+++|+.|+|++|.++. 
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence             456788899999999997432     23335678899999999999995     378888999999999999999864 


Q ss_pred             ----cchHHhh--cCCccccccccccccc----ccCCC----ccCcceeccccc
Q 011891          198 ----IPESIIR--LSKLSSLLVSYCERLQ----SLPKL----PCNLYWLDAQHC  237 (475)
Q Consensus       198 ----lp~~i~~--l~~L~~L~l~~c~~l~----~lp~l----~~~L~~L~i~~c  237 (475)
                          ++..+..  +++|+.|+|++|..-.    .+|..    .++|+.|++++|
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence                4666644  8999999999986433    25532    366777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=5.5e-17  Score=170.67  Aligned_cols=181  Identities=19%  Similarity=0.282  Sum_probs=151.5

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeee
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLG   97 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~   97 (475)
                      +|+.|+|+++ .++.+|.  .+  +++|++|+|++| .+..+|  ..+++|++|++++|.++.+|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~--~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPD--NL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSS-CCSCCCS--CC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCC-CCCccCH--hH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            8999999986 5677775  22  378999999995 577888  668999999999999999988 655  99999999


Q ss_pred             CCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch
Q 011891           98 DCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE  177 (475)
Q Consensus        98 ~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~  177 (475)
                      +|. ++.+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|. +..+|. +.  ++|+.|+|++|+++.+|.
T Consensus       129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchhh
Confidence            975 556887   68999999999999999887   57899999999997 455776 54  899999999999999988


Q ss_pred             hhCCCCCC-------ceeEeccCCccccchHHhhcCCcccccccccccccccC
Q 011891          178 SLGLLSSL-------EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       178 ~l~~l~~L-------~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                       +..  +|       +.|+|++|+|+.+|..+..+++|+.|++++|+.-..+|
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence             544  77       99999999999999989899999999999997544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=8.4e-19  Score=172.88  Aligned_cols=231  Identities=18%  Similarity=0.204  Sum_probs=173.5

Q ss_pred             ccccCC--CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC-CcC-cCCCCCCcEEEccccCCc-ccCccc
Q 011891           11 ESVQHH--GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS-LPE-ISSAGNIEKILLDGTAIE-ELPSSI   85 (475)
Q Consensus        11 ~~~~~l--~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~-~p~-i~~l~~L~~L~L~~~~i~-~lp~~i   85 (475)
                      ..+..+  ++++.|+++++.. ...+.  .+..+++|++|++++|..... +|. +..+++|++|++++|.+. ..+..+
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l-~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l  138 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFM-DQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL  138 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEE-CSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred             HHHHhhhhccceEEEcCCccc-cccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence            344455  8999999998654 43332  256789999999999863223 565 778999999999999887 567788


Q ss_pred             CCCCCCcEEeeeCCCCCC--ccccccCCCCCCcEEEeeCc-CCcc--CCcccCCCC-CcCEEEcCCCC-CC--CccccCC
Q 011891           86 GCLSRLLELNLGDCKNLK--TLPSSLCKLKSLEEICLTGS-AIEE--LPSPIECLS-ALCVLDLGDCK-SL--KSLKLPF  156 (475)
Q Consensus        86 ~~l~~L~~L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~L~~c~-~l--~~l~~~~  156 (475)
                      ..+++|++|++++|..++  .++..+..+++|++|++++| .++.  ++..+..++ +|++|++++|. .+  ..++..+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            889999999999996666  37777888999999999999 8884  677788889 99999999995 23  3345555


Q ss_pred             CCCCCCCEEEecCCC-CCC-cchhhCCCCCCceeEeccCC-cc-ccchHHhhcCCcccccccccccccccCCCccCccee
Q 011891          157 DGLYSLTYLYLTDCA-ITE-LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWL  232 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~-l~~-lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L  232 (475)
                      ..+++|+.|++++|. +++ .+..+..+++|+.|++++|. +. .....+..+++|+.|++++|-.-..+..+...+..|
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L  298 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL  298 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcce
Confidence            678999999999998 664 66788899999999999995 32 111357889999999999981111222233457777


Q ss_pred             cccccccCccccC
Q 011891          233 DAQHCTTLESLSG  245 (475)
Q Consensus       233 ~i~~c~~L~~l~~  245 (475)
                      +++ |..++....
T Consensus       299 ~l~-~n~l~~~~~  310 (336)
T 2ast_B          299 QIN-CSHFTTIAR  310 (336)
T ss_dssp             EES-CCCSCCTTC
T ss_pred             EEe-cccCccccC
Confidence            774 455655444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2.2e-17  Score=150.29  Aligned_cols=149  Identities=17%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEE
Q 011891           64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLD  142 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~  142 (475)
                      .+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4455566666666655555 4555666666666665 333333 45556666666666666653 455556666666666


Q ss_pred             cCCCCCCCccccCCCCCCCCCEEEecCCC-CCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +++|......+..+..+++|+.|++++|. ++++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            66665443344445566666666666665 55555 4566666666666666666655 55666666666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=1.5e-16  Score=150.46  Aligned_cols=171  Identities=26%  Similarity=0.346  Sum_probs=145.6

Q ss_pred             CCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891           43 NKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL  120 (475)
Q Consensus        43 ~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l  120 (475)
                      ...+++++++ ..+..+|. +.  ++|+.|+|++|.+..++. .+.++++|++|++++|......|..+..+++|++|++
T Consensus        14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567899988 57888887 44  689999999999997765 6889999999999998665555666889999999999


Q ss_pred             eCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccc
Q 011891          121 TGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER  197 (475)
Q Consensus       121 ~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~  197 (475)
                      ++|.++.+|. .+..+++|++|++++|... .++. .+.++++|+.|+|++|+++++|. .++.+++|+.|+|++|+++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999998875 4688999999999999744 4544 45889999999999999999776 68899999999999999998


Q ss_pred             cch-HHhhcCCcccccccccc
Q 011891          198 IPE-SIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       198 lp~-~i~~l~~L~~L~l~~c~  217 (475)
                      ++. .+..+++|+.|++++|+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCC
T ss_pred             cCHHHHhCCCCCCEEEeeCCc
Confidence            874 68889999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=7.9e-18  Score=164.38  Aligned_cols=200  Identities=19%  Similarity=0.196  Sum_probs=136.3

Q ss_pred             CCCcEEEEeCCCCCCC----CcCcCCCCCCcEEEccccCCc-ccCccc--CCCCCCcEEeeeCCCCCCccc----cccCC
Q 011891           43 NKLVILNLSGCSKLKS----LPEISSAGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLP----SSLCK  111 (475)
Q Consensus        43 ~~L~~L~L~~c~~l~~----~p~i~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp----~~l~~  111 (475)
                      ..++.|.+.++..-..    +.....+++|++|++++|.+. ..|..+  ..+++|++|++++|......+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3467777777532110    111223466888888888877 455555  778888888888876554433    23456


Q ss_pred             CCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCCCCc--cc--cCCCCCCCCCEEEecCCCCCCcchh----hCCC
Q 011891          112 LKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKS--LK--LPFDGLYSLTYLYLTDCAITELPES----LGLL  182 (475)
Q Consensus       112 l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--l~--~~~~~l~~L~~L~L~~~~l~~lp~~----l~~l  182 (475)
                      +++|++|++++|.+..++ ..+..+++|++|++++|.....  ++  ..+..+++|+.|++++|+++.++..    ++.+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            788888888888888665 4677888888888888875432  22  2235778888888888888765542    4677


Q ss_pred             CCCceeEeccCCcccc-chHHhhc---CCcccccccccccccccCC-CccCcceecccccccCcccc
Q 011891          183 SSLEELYLERNNFERI-PESIIRL---SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       183 ~~L~~L~L~~n~l~~l-p~~i~~l---~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~  244 (475)
                      ++|++|+|++|+++.+ |..+..+   ++|++|++++|. ++.+|. ++++|+.|+++++ .++.++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~  288 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAP  288 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCc
Confidence            8888888888888765 6666665   588888888874 446664 5678888888776 355443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=6.8e-19  Score=177.28  Aligned_cols=210  Identities=19%  Similarity=0.205  Sum_probs=164.5

Q ss_pred             ccccccCCCCCcEEeccCCC--Ccc-CCCC-----hhhccCCCCCcEEEEeCCCCCC----CCcC-cCCCCCCcEEEccc
Q 011891            9 LSESVQHHGKLNQIIMAACN--IFT-KTPN-----PSLIQHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDG   75 (475)
Q Consensus         9 L~~~~~~l~~L~~L~Ls~~~--~l~-~~p~-----~~~~~~l~~L~~L~L~~c~~l~----~~p~-i~~l~~L~~L~L~~   75 (475)
                      +...+..+++|++|+|++|.  .++ .+|.     ...+.++++|++|+|++|..-.    .+|. +..+++|++|+|++
T Consensus        52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  131 (386)
T 2ca6_A           52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN  131 (386)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence            44557789999999999973  232 2231     0123688999999999975443    2554 67899999999999


Q ss_pred             cCCcc-----cCcccCCC---------CCCcEEeeeCCCCC-Cccc---cccCCCCCCcEEEeeCcCCc------cCCcc
Q 011891           76 TAIEE-----LPSSIGCL---------SRLLELNLGDCKNL-KTLP---SSLCKLKSLEEICLTGSAIE------ELPSP  131 (475)
Q Consensus        76 ~~i~~-----lp~~i~~l---------~~L~~L~L~~c~~l-~~lp---~~l~~l~~L~~L~l~~~~i~------~lp~~  131 (475)
                      |.+..     ++..+..+         ++|++|++++|... ..+|   ..+..+++|++|++++|.++      -++..
T Consensus       132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~  211 (386)
T 2ca6_A          132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG  211 (386)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence            99862     33444445         89999999998754 3444   46778899999999999998      23447


Q ss_pred             cCCCCCcCEEEcCCCCCC----CccccCCCCCCCCCEEEecCCCCCC-----cchhh--CCCCCCceeEeccCCccc---
Q 011891          132 IECLSALCVLDLGDCKSL----KSLKLPFDGLYSLTYLYLTDCAITE-----LPESL--GLLSSLEELYLERNNFER---  197 (475)
Q Consensus       132 i~~l~~L~~L~L~~c~~l----~~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~---  197 (475)
                      +..+++|+.|++++|...    ..++..+..+++|+.|+|++|.+++     ++..+  +.+++|+.|+|++|.++.   
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~  291 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  291 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence            889999999999999852    5566667889999999999999987     46666  449999999999999986   


Q ss_pred             --cchHH-hhcCCccccccccccc
Q 011891          198 --IPESI-IRLSKLSSLLVSYCER  218 (475)
Q Consensus       198 --lp~~i-~~l~~L~~L~l~~c~~  218 (475)
                        +|..+ .++++|+.|++++|+.
T Consensus       292 ~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          292 RTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHHhcCCCceEEEccCCcC
Confidence              88877 6689999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=1.7e-16  Score=167.03  Aligned_cols=182  Identities=22%  Similarity=0.335  Sum_probs=152.8

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++++|..+|.++  +++|++|+|++| .++.+|     ..+++|++|+|++| .+..+|.+..  +|++|++++|.++.
T Consensus        66 Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           66 LNRLNLSSLPDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPELPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCCCCT--TCCEEECCSSCCSC
T ss_pred             eCCCCCCccCHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcchhhc--CCCEEECCCCcCCC
Confidence            4678888888876  489999999996 566777     34789999999996 5677888444  99999999999999


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCC
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY  160 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~  160 (475)
                      +|.   .+++|++|++++|. ++.+|.   .+++|++|++++|.++.+|. +.  ++|+.|++++|. +..+|. +..  
T Consensus       135 lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--  200 (571)
T 3cvr_A          135 LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV--  200 (571)
T ss_dssp             CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC---
T ss_pred             CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--
Confidence            988   68999999999975 566886   57899999999999999998 65  999999999996 557776 543  


Q ss_pred             CC-------CEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcCC
Q 011891          161 SL-------TYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSK  207 (475)
Q Consensus       161 ~L-------~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~  207 (475)
                      +|       +.|+|++|.++.+|..+..+++|+.|+|++|+++ .+|..+..+..
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            67       9999999999999999999999999999999996 66777766543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=6.8e-17  Score=171.58  Aligned_cols=174  Identities=26%  Similarity=0.372  Sum_probs=99.9

Q ss_pred             cCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891           14 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   93 (475)
Q Consensus        14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   93 (475)
                      ..+++|+.|++++|. +..++   .+..+++|+.|+|++| .+..++.+..+++|+.|+|++|.+..++ .+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            455666666666543 34443   2455666666666664 3445555666666666666666666554 4556666666


Q ss_pred             EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891           94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~  173 (475)
                      |+|++|. +..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|......|  +..+++|+.|+|++|.++
T Consensus       114 L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            6666653 33333 355666666666666666655 455566666666666655332222  455666666666666666


Q ss_pred             CcchhhCCCCCCceeEeccCCccccc
Q 011891          174 ELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       174 ~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      +++ .+..+++|+.|+|++|++...|
T Consensus       189 ~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          189 DLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCh-HHccCCCCCEEEccCCcCcCCc
Confidence            653 3555666666666666655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.7e-17  Score=147.53  Aligned_cols=153  Identities=20%  Similarity=0.264  Sum_probs=132.9

Q ss_pred             cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEE
Q 011891           40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  119 (475)
Q Consensus        40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~  119 (475)
                      ..+++|+.|++++| .+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            56788999999995 6778888889999999999999887665 688899999999999876666788899999999999


Q ss_pred             eeCcCCcc-CCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          120 LTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       120 l~~~~i~~-lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +++|.++. .|..+..+++|++|++++|..+..++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            99999985 67788999999999999998677777 6788999999999999999987 7888999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=8.9e-17  Score=170.67  Aligned_cols=189  Identities=25%  Similarity=0.315  Sum_probs=159.1

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   96 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L   96 (475)
                      .++..+.+... .+..+.   .+..+++|+.|++++| .+..+|.+..+++|+.|+|++|.+..++. +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~-~i~~~~---~~~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKK-SVTDAV---TQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCS-CTTSEE---CHHHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred             HHHHHHhccCC-Cccccc---chhcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence            34444555553 333333   3567788999999995 57888889999999999999999998887 889999999999


Q ss_pred             eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc
Q 011891           97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  176 (475)
Q Consensus        97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp  176 (475)
                      ++|. +..+| .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.. ..+ ..+..+++|+.|+|++|.+.+++
T Consensus        95 s~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           95 DENK-IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             CSSC-CCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             cCCC-CCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCch
Confidence            9974 56666 6899999999999999999874 588899999999999974 444 45678999999999999999976


Q ss_pred             hhhCCCCCCceeEeccCCccccchHHhhcCCccccccccccc
Q 011891          177 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER  218 (475)
Q Consensus       177 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~  218 (475)
                      . +..+++|+.|+|++|+++.+| .+..+++|+.|+|++|+.
T Consensus       170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence            6 899999999999999999886 688999999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.3e-17  Score=155.39  Aligned_cols=146  Identities=22%  Similarity=0.298  Sum_probs=77.1

Q ss_pred             cCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEE
Q 011891           40 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC  119 (475)
Q Consensus        40 ~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~  119 (475)
                      ..+++|++|++++| .+..+|.+..+++|++|++++|.++.++. +..+++|++|+++                      
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~----------------------   93 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN----------------------   93 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC----------------------
T ss_pred             hhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC----------------------
Confidence            34455555555553 34444444455555555555555554444 4444445555554                      


Q ss_pred             eeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891          120 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       120 l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                        +|.++.+|....  ++|+.|++++|. +..++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|+++.+ 
T Consensus        94 --~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 --RNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             --SSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             --CCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence              444444433222  445555555543 22232 2445566666666666666654 455666666666666666655 


Q ss_pred             hHHhhcCCcccccccccc
Q 011891          200 ESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       200 ~~i~~l~~L~~L~l~~c~  217 (475)
                      ..+..+++|+.|++++|+
T Consensus       166 ~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCCc
Confidence            345566666666666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=3e-15  Score=137.18  Aligned_cols=151  Identities=24%  Similarity=0.330  Sum_probs=83.2

Q ss_pred             CCcEEEccccCCcccCcc-cCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEc
Q 011891           67 NIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDL  143 (475)
Q Consensus        67 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L  143 (475)
                      +|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            444555555544444432 3445555555555532 223332 234555555555555555555443 355556666666


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccchHHhhcCCccccccccccccccc
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL  222 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~l  222 (475)
                      ++|......+..+..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.      ..+++|+.|+++.+.....+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTB
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCcee
Confidence            65543222222345666777777777777765543 566777777777777654      23456777777776655555


Q ss_pred             CC
Q 011891          223 PK  224 (475)
Q Consensus       223 p~  224 (475)
                      |.
T Consensus       182 p~  183 (208)
T 2o6s_A          182 RN  183 (208)
T ss_dssp             BC
T ss_pred             ec
Confidence            54

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=1.3e-17  Score=166.59  Aligned_cols=215  Identities=16%  Similarity=0.135  Sum_probs=154.1

Q ss_pred             CCCCCccccccc-ccCCCCCcEEeccCCCCccCCCC---hhhccCCC-CCcEEEEeCCCCCCCC-cC-cCCC-----CCC
Q 011891            1 MPHSNIEQLSES-VQHHGKLNQIIMAACNIFTKTPN---PSLIQHLN-KLVILNLSGCSKLKSL-PE-ISSA-----GNI   68 (475)
Q Consensus         1 l~~s~l~~L~~~-~~~l~~L~~L~Ls~~~~l~~~p~---~~~~~~l~-~L~~L~L~~c~~l~~~-p~-i~~l-----~~L   68 (475)
                      |+++++..+... +...++|++|+|++|. ++..+.   ...+.+++ +|++|+|++|. +... +. +..+     ++|
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCc
Confidence            456777755444 4455569999999976 555542   13566788 89999999974 4443 33 4432     899


Q ss_pred             cEEEccccCCcccCcc-----cCCC-CCCcEEeeeCCCCCCccccc----cCC-CCCCcEEEeeCcCCc-----cCCccc
Q 011891           69 EKILLDGTAIEELPSS-----IGCL-SRLLELNLGDCKNLKTLPSS----LCK-LKSLEEICLTGSAIE-----ELPSPI  132 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~c~~l~~lp~~----l~~-l~~L~~L~l~~~~i~-----~lp~~i  132 (475)
                      ++|+|++|.++..+..     +..+ ++|++|++++|......+..    +.. .++|++|++++|.++     .++..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            9999999998855432     4555 89999999998743333322    344 369999999999988     344455


Q ss_pred             CCCC-CcCEEEcCCCCCCCccccC----CCCC-CCCCEEEecCCCCCC-----cchhhCC-CCCCceeEeccCCccccc-
Q 011891          133 ECLS-ALCVLDLGDCKSLKSLKLP----FDGL-YSLTYLYLTDCAITE-----LPESLGL-LSSLEELYLERNNFERIP-  199 (475)
Q Consensus       133 ~~l~-~L~~L~L~~c~~l~~l~~~----~~~l-~~L~~L~L~~~~l~~-----lp~~l~~-l~~L~~L~L~~n~l~~lp-  199 (475)
                      ..+. +|++|++++|......+..    +..+ ++|+.|+|++|.+++     ++..+.. .++|+.|+|++|.++..+ 
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            5555 9999999999743333222    2344 589999999999988     6666665 469999999999997554 


Q ss_pred             ----hHHhhcCCcccccccccc
Q 011891          200 ----ESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       200 ----~~i~~l~~L~~L~l~~c~  217 (475)
                          ..+..+++|+.|++++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence                234667899999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.9e-16  Score=151.01  Aligned_cols=162  Identities=19%  Similarity=0.210  Sum_probs=120.9

Q ss_pred             CCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCccc
Q 011891            2 PHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         2 ~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~l   81 (475)
                      .+++++.++ .+..+++|++|++++| .++.++   .+..+++|++|+|++| .+..++.+..+++|++|++++|.++.+
T Consensus        27 ~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           27 GKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             TCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred             cCCCccccc-chhhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCccCCc
Confidence            467778776 6789999999999997 566766   4778999999999995 677888899999999999999999988


Q ss_pred             CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCC
Q 011891           82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYS  161 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~  161 (475)
                      |....  ++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .                        +..+++
T Consensus       101 ~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~------------------------l~~l~~  151 (263)
T 1xeu_A          101 NGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-M------------------------LGFLSK  151 (263)
T ss_dssp             TTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-G------------------------GGGCTT
T ss_pred             Ccccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-H------------------------HccCCC
Confidence            76433  777777777753 44444 4666667777776666655543 2                        344566


Q ss_pred             CCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc
Q 011891          162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      |+.|++++|.++++ ..+..+++|+.|++++|.+...|
T Consensus       152 L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          152 LEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            66666666666666 45677788888888888776554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=2.1e-15  Score=150.50  Aligned_cols=169  Identities=21%  Similarity=0.264  Sum_probs=115.8

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcc-cC-CCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IG-CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  122 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~  122 (475)
                      +.+++++ ..+..+|. +.  +.++.|+|++|.|+.++.. +. .+++|++|+|++|......+..+..+++|++|++++
T Consensus        21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCS-SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCC-CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4566666 45666665 32  4577777777777766654 33 677777777777543333334577777888888888


Q ss_pred             cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhh----CCCCCCceeEeccCCccc
Q 011891          123 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL----GLLSSLEELYLERNNFER  197 (475)
Q Consensus       123 ~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~L~~n~l~~  197 (475)
                      |.++.++. .+..+++|+.|+|++|......+..+.++++|+.|+|++|.++.+|..+    ..+++|+.|+|++|+|+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            87776655 4677778888888877755444566777888888888888888877654    567888888888888887


Q ss_pred             cc-hHHhhcCC--cccccccccc
Q 011891          198 IP-ESIIRLSK--LSSLLVSYCE  217 (475)
Q Consensus       198 lp-~~i~~l~~--L~~L~l~~c~  217 (475)
                      +| ..+..++.  |+.|++++|+
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSC
T ss_pred             cCHHHhhhccHhhcceEEecCCC
Confidence            77 45666665  3666776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=4.4e-15  Score=136.04  Aligned_cols=174  Identities=25%  Similarity=0.324  Sum_probs=126.3

Q ss_pred             cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEee
Q 011891           20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNL   96 (475)
Q Consensus        20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L   96 (475)
                      +.++.++ ..++.+|.    ...++|++|++++| .+..++.  +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        10 ~~v~c~~-~~l~~~p~----~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           10 TTVECYS-QGRTSVPT----GIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TEEECCS-SCCSSCCS----CCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecC-CCccCCCC----CCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            4556665 34566663    22457888888885 4556655  56788888888888888877664 577888888888


Q ss_pred             eCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCC
Q 011891           97 GDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus        97 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~  173 (475)
                      ++|. +..+|. .+..+++|++|++++|.++.++.. +..+++|+.|++++|... .++. .+..+++|+.|++++|.+.
T Consensus        84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           84 STNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee
Confidence            8865 444443 467888888888888888877765 677888888888888644 4443 3677888999999988654


Q ss_pred             CcchhhCCCCCCceeEeccCCcc-ccchHHhhcCC
Q 011891          174 ELPESLGLLSSLEELYLERNNFE-RIPESIIRLSK  207 (475)
Q Consensus       174 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~  207 (475)
                            +.+++|+.|+++.|+++ .+|..++.++.
T Consensus       162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  34678899999999886 78877765554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=2.8e-15  Score=139.78  Aligned_cols=146  Identities=29%  Similarity=0.374  Sum_probs=82.4

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCccc-CcccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeC
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTG  122 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~  122 (475)
                      +.++.++ ..+..+|. +.  ++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++
T Consensus        22 ~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence            4566655 45566665 32  5666666666666655 3455666666666666654 344442 345666666666666


Q ss_pred             cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891          123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~  196 (475)
                      |.++.++.. +..+++|+.|++++|. +..+|..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            666655543 3555566666665554 33455555555555555555555555442 3455555555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=2.5e-17  Score=169.43  Aligned_cols=103  Identities=21%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCCc------chhhCCCCCCceeEeccCCccc-----cch
Q 011891          136 SALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITEL------PESLGLLSSLEELYLERNNFER-----IPE  200 (475)
Q Consensus       136 ~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~l------p~~l~~l~~L~~L~L~~n~l~~-----lp~  200 (475)
                      ++|++|++++|.....    ++..+..+++|+.|++++|.+++.      +.....+++|+.|++++|.++.     ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3555555555542221    222234456666666666665541      2222346666666666666654     555


Q ss_pred             HHhhcCCccccccccccccc----cc----CCCccCcceecccccc
Q 011891          201 SIIRLSKLSSLLVSYCERLQ----SL----PKLPCNLYWLDAQHCT  238 (475)
Q Consensus       201 ~i~~l~~L~~L~l~~c~~l~----~l----p~l~~~L~~L~i~~c~  238 (475)
                      .+..+++|+.|++++|..-.    .+    ...+++|+.|++++|.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            56666777777776664211    11    1122466666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=6.5e-15  Score=136.40  Aligned_cols=148  Identities=25%  Similarity=0.378  Sum_probs=112.4

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS  123 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~  123 (475)
                      +.+++++ ..+..+|. +.  ++|++|++++|.++.++. .+..+++|++|+|++|......|..+..+++|++|++++|
T Consensus        14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4566666 45666765 33  678888888888887765 6777888888888887655445777888888888888888


Q ss_pred             CCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891          124 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       124 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~  196 (475)
                      .++.+|.. +..+++|+.|++++|......+..+.++++|+.|+|++|.++.++. .+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888765 4678888888888887555555667788888888888888888654 4777888888888888875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=1.2e-18  Score=183.91  Aligned_cols=193  Identities=20%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             ccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCC-------------CCCCCcC-cCCCCCCcEEE-ccccC
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCS-------------KLKSLPE-ISSAGNIEKIL-LDGTA   77 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~-------------~l~~~p~-i~~l~~L~~L~-L~~~~   77 (475)
                      +..++.|+.|+|+++ .++.+|  ..+++|++|+.|++++|.             ..+..|. ++.+++|+.|+ ++.+.
T Consensus       345 ~~~~~~L~~L~Ls~n-~L~~Lp--~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~  421 (567)
T 1dce_A          345 SATDEQLFRCELSVE-KSTVLQ--SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  421 (567)
T ss_dssp             CSTTTTSSSCCCCHH-HHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             cccCccceeccCChh-hHHhhH--HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence            356778888888874 456665  356777788888775542             2222333 44555666665 34332


Q ss_pred             CcccCc------ccCC--CCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC
Q 011891           78 IEELPS------SIGC--LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL  149 (475)
Q Consensus        78 i~~lp~------~i~~--l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l  149 (475)
                      +..++.      .+..  ...|+.|++++| .++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|. +
T Consensus       422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l  498 (567)
T 1dce_A          422 LDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-L  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-C
T ss_pred             cchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-C
Confidence            222111      0000  124666777665 3455665 666677777777777777666666666777777776665 3


Q ss_pred             CccccCCCCCCCCCEEEecCCCCCCc--chhhCCCCCCceeEeccCCccccchH----HhhcCCccccc
Q 011891          150 KSLKLPFDGLYSLTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIPES----IIRLSKLSSLL  212 (475)
Q Consensus       150 ~~l~~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~  212 (475)
                      ..+| .++++++|+.|+|++|.++++  |..++.+++|+.|+|++|+++.+|..    +..+++|+.|+
T Consensus       499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            3355 556666677777777766665  66666677777777777766655432    23355665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=134.33  Aligned_cols=148  Identities=26%  Similarity=0.304  Sum_probs=109.8

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCc--ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS--SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  122 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~  122 (475)
                      +.+++++ +.++.+|. +  .+.+++|+|++|.++.++.  .+..+++|++|++++|......+..+..+++|++|++++
T Consensus        14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4677776 45666665 3  2456778888888877633  367788888888887653333334677888888888888


Q ss_pred             cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcc
Q 011891          123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~  196 (475)
                      |.++.++.. +..+++|++|++++|......|..+.++++|+.|+|++|+++.+ |..+..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            888877654 77788888888888876555566777888888999988888886 677888889999999988875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=4.4e-15  Score=158.30  Aligned_cols=221  Identities=20%  Similarity=0.193  Sum_probs=175.8

Q ss_pred             cCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCcccCcccCCCCC
Q 011891           14 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEELPSSIGCLSR   90 (475)
Q Consensus        14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~   90 (475)
                      ..+..|+.+++..+... ..+   ....+++|+.|+++++.....  .+. ...+.+|+.|++..+.+..++..+..+++
T Consensus       346 ~~l~~L~~l~l~~n~~~-~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~  421 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGG-NAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ  421 (635)
T ss_dssp             CBCTTCCEEEEESCCSC-CBC---CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred             ccchhhhhcccccccCC-CCc---ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence            35778999999886432 222   245789999999998643221  222 44788999999999998888888899999


Q ss_pred             CcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCc-cccCCCCCCCCCEEEe
Q 011891           91 LLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKS-LKLPFDGLYSLTYLYL  167 (475)
Q Consensus        91 L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~-l~~~~~~l~~L~~L~L  167 (475)
                      |+.+++..+......+ ..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|..+..+++|+.|+|
T Consensus       422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence            9999999877655544 3467899999999999999855 45678899999999999986554 5667789999999999


Q ss_pred             cCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC----CccCcceecccccc
Q 011891          168 TDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT  238 (475)
Q Consensus       168 ~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~----l~~~L~~L~i~~c~  238 (475)
                      ++|+++++ |..++.+++|+.|+|++|+++.++ ..+..+++|+.|++++|+.....|.    +|.+|+.|++++++
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            99999995 677899999999999999999876 5688999999999999864443333    45778888887753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=9.2e-15  Score=135.37  Aligned_cols=145  Identities=26%  Similarity=0.397  Sum_probs=122.1

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC  146 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c  146 (475)
                      +.++++++.++++|..+.  ++|+.|++++|. +..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578899999999998764  789999999975 44554 4788899999999999999976 678999999999999998


Q ss_pred             CCCCccccC-CCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891          147 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       147 ~~l~~l~~~-~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~  217 (475)
                      .. ..+|.. +.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus        91 ~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 KI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cC-CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            74 455543 57899999999999999985 5678899999999999999988874 57788899999988874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=2.3e-17  Score=169.69  Aligned_cols=222  Identities=19%  Similarity=0.232  Sum_probs=153.8

Q ss_pred             CCCCCcEEeccCCCCccCCC---ChhhccCCCCCcEEEEeCCCCCCCCc-C-cC-----CCCCCcEEEccccCCcc----
Q 011891           15 HHGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKSLP-E-IS-----SAGNIEKILLDGTAIEE----   80 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p---~~~~~~~l~~L~~L~L~~c~~l~~~p-~-i~-----~l~~L~~L~L~~~~i~~----   80 (475)
                      ..++|++|++++|. ++...   ....+..+++|++|++++|. +.... . +.     ..++|++|++++|.++.    
T Consensus       140 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          140 PQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             CCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            35689999999974 33221   02345667899999999975 43321 1 22     36699999999998875    


Q ss_pred             -cCcccCCCCCCcEEeeeCCCCCCc----c-ccccCCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCC
Q 011891           81 -LPSSIGCLSRLLELNLGDCKNLKT----L-PSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSL  149 (475)
Q Consensus        81 -lp~~i~~l~~L~~L~L~~c~~l~~----l-p~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l  149 (475)
                       ++..+..+++|++|++++|.....    + +.....+++|++|++++|.++.     ++..+..+++|++|++++|...
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence             567777889999999999753221    2 2223358899999999998885     6777778899999999988632


Q ss_pred             CccccCC-----CCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcccc-chHHhh-----cCCcccccc
Q 011891          150 KSLKLPF-----DGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFERI-PESIIR-----LSKLSSLLV  213 (475)
Q Consensus       150 ~~l~~~~-----~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~-----l~~L~~L~l  213 (475)
                      ...+..+     ...++|+.|++++|.+++     ++..+..+++|+.|++++|.++.. +..+..     .++|+.|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            2111111     234689999999998886     466677888999999999988643 233332     678999999


Q ss_pred             ccccccc----ccCCC---ccCcceecccccc
Q 011891          214 SYCERLQ----SLPKL---PCNLYWLDAQHCT  238 (475)
Q Consensus       214 ~~c~~l~----~lp~l---~~~L~~L~i~~c~  238 (475)
                      ++|..-.    .+|..   .++|+.|+++++.
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            9885321    44432   3678888888773

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=7.6e-15  Score=135.91  Aligned_cols=147  Identities=24%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             CcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCcc-c-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcC
Q 011891           68 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTL-P-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG  144 (475)
Q Consensus        68 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-p-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~  144 (475)
                      -+.++++++.++.+|..+.  ..+++|++++|. +..+ | ..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3589999999999998663  467899999975 4555 3 347889999999999999998776 78999999999999


Q ss_pred             CCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCcccc-chHHhhcCCcccccccccc
Q 011891          145 DCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       145 ~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~l~~c~  217 (475)
                      +|......+..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            9986555555578899999999999999996 67788999999999999999877 6788889999999998874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=2.4e-14  Score=133.42  Aligned_cols=148  Identities=27%  Similarity=0.335  Sum_probs=89.3

Q ss_pred             CcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCC
Q 011891           68 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC  146 (475)
Q Consensus        68 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c  146 (475)
                      .+.++.+++.+..+|..+.  ++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4456666666666665442  6666666666554444455566666666666666666666543 456666666666666


Q ss_pred             CCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccc
Q 011891          147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       147 ~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~  217 (475)
                      ......+..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            53322222345666666666666666666666666666666666666666555 335566666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.58  E-value=4.1e-16  Score=155.63  Aligned_cols=215  Identities=14%  Similarity=0.130  Sum_probs=155.4

Q ss_pred             CCCCCccccc-----ccccCCC-CCcEEeccCCCCccCCCChhhccCC-----CCCcEEEEeCCCCCCCCcC-----cCC
Q 011891            1 MPHSNIEQLS-----ESVQHHG-KLNQIIMAACNIFTKTPNPSLIQHL-----NKLVILNLSGCSKLKSLPE-----ISS   64 (475)
Q Consensus         1 l~~s~l~~L~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~~~~~~~l-----~~L~~L~L~~c~~l~~~p~-----i~~   64 (475)
                      |++|+|...+     +.++.++ +|++|+|++|. ++.... ..+..+     ++|++|+|++|..-...+.     +..
T Consensus        29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~  106 (362)
T 3goz_A           29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA  106 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence            4567777765     6778888 99999999974 444322 233332     8999999999763333333     334


Q ss_pred             C-CCCcEEEccccCCcccCc-----ccCC-CCCCcEEeeeCCCCCC----ccccccCCCC-CCcEEEeeCcCCccCCc--
Q 011891           65 A-GNIEKILLDGTAIEELPS-----SIGC-LSRLLELNLGDCKNLK----TLPSSLCKLK-SLEEICLTGSAIEELPS--  130 (475)
Q Consensus        65 l-~~L~~L~L~~~~i~~lp~-----~i~~-l~~L~~L~L~~c~~l~----~lp~~l~~l~-~L~~L~l~~~~i~~lp~--  130 (475)
                      + ++|++|++++|.++..+.     .+.. .++|++|++++|....    .++..+..++ +|++|++++|.++....  
T Consensus       107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  186 (362)
T 3goz_A          107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE  186 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence            4 899999999999986654     2344 3699999999986543    4455556665 99999999999986543  


Q ss_pred             ---ccCCC-CCcCEEEcCCCCCCCc----cccCCCC-CCCCCEEEecCCCCCCc-----chhhCCCCCCceeEeccCCcc
Q 011891          131 ---PIECL-SALCVLDLGDCKSLKS----LKLPFDG-LYSLTYLYLTDCAITEL-----PESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       131 ---~i~~l-~~L~~L~L~~c~~l~~----l~~~~~~-l~~L~~L~L~~~~l~~l-----p~~l~~l~~L~~L~L~~n~l~  196 (475)
                         .+... ++|++|++++|.....    ++..+.. .++|+.|+|++|.+++.     ...+..+++|+.|++++|.+.
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence               34455 5999999999984331    3333333 45899999999999884     344578899999999999854


Q ss_pred             c--------cchHHhhcCCcccccccccc
Q 011891          197 R--------IPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       197 ~--------lp~~i~~l~~L~~L~l~~c~  217 (475)
                      .        ++..+..+++|+.|++++|+
T Consensus       267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          267 NMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             ccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            3        33445667888888998885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=128.35  Aligned_cols=128  Identities=23%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             CCCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEE
Q 011891           65 AGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLD  142 (475)
Q Consensus        65 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  142 (475)
                      .++|++|++++|.+.  .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~---------------   85 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG---------------   85 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCch---------------
Confidence            356666666666665  555555556666666666554 3333 345555555555555555544               


Q ss_pred             cCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCccccch----HHhhcCCccccccccc
Q 011891          143 LGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSYC  216 (475)
Q Consensus       143 L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~l~~c  216 (475)
                              .+|..+..+++|+.|++++|.++++|  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|
T Consensus        86 --------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           86 --------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             --------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             --------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                    23333344666777777777777654  567777777777777777776665    5677777777777776


Q ss_pred             c
Q 011891          217 E  217 (475)
Q Consensus       217 ~  217 (475)
                      .
T Consensus       158 ~  158 (168)
T 2ell_A          158 E  158 (168)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=2.4e-14  Score=142.71  Aligned_cols=169  Identities=23%  Similarity=0.309  Sum_probs=135.6

Q ss_pred             cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cC-CCCCCcEEEccccCCcccCc-ccCCCCCCcEEe
Q 011891           20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--IS-SAGNIEKILLDGTAIEELPS-SIGCLSRLLELN   95 (475)
Q Consensus        20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~   95 (475)
                      +.+++++ ..++.+|.  .+  .+.++.|+|++| .+..++.  +. .+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus        21 ~~l~c~~-~~l~~iP~--~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQ--SL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCS-SCCSSCCS--SC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCC-CCcCccCc--cC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            6788887 46788885  22  246899999995 5666655  55 89999999999999998875 688999999999


Q ss_pred             eeCCCCCCccc-cccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccCC----CCCCCCCEEEecC
Q 011891           96 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPF----DGLYSLTYLYLTD  169 (475)
Q Consensus        96 L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~----~~l~~L~~L~L~~  169 (475)
                      |++|. +..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|+|++|. +..+|...    ..+++|+.|+|++
T Consensus        95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred             CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence            99976 55554 4678899999999999999976 5678999999999999987 45565543    5689999999999


Q ss_pred             CCCCCcc-hhhCCCCC--CceeEeccCCcc
Q 011891          170 CAITELP-ESLGLLSS--LEELYLERNNFE  196 (475)
Q Consensus       170 ~~l~~lp-~~l~~l~~--L~~L~L~~n~l~  196 (475)
                      |+++.+| ..+..++.  |+.|+|++|.+.
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999976 45666776  488999999885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=9.9e-15  Score=128.94  Aligned_cols=134  Identities=22%  Similarity=0.297  Sum_probs=102.4

Q ss_pred             CCCCCcEEEEeCCCCC-CCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEE
Q 011891           41 HLNKLVILNLSGCSKL-KSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI  118 (475)
Q Consensus        41 ~l~~L~~L~L~~c~~l-~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L  118 (475)
                      ..++|+.|++++|... ..+|. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4578999999997633 37888 58999999999999999988 788999999999999987665588777779999999


Q ss_pred             EeeCcCCccCC--cccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEecc
Q 011891          119 CLTGSAIEELP--SPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLER  192 (475)
Q Consensus       119 ~l~~~~i~~lp--~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~~  192 (475)
                      ++++|.++.+|  ..+..                        +++|+.|++++|.++++|.    .+..+++|+.|++++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~------------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKK------------------------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSS------------------------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             eccCCccCcchhHHHHhc------------------------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            99999888765  34444                        4455555555555555544    566666666666666


Q ss_pred             CCccccc
Q 011891          193 NNFERIP  199 (475)
Q Consensus       193 n~l~~lp  199 (475)
                      |.+..+|
T Consensus       157 n~~~~~~  163 (168)
T 2ell_A          157 REDQEAP  163 (168)
T ss_dssp             TTSCBCC
T ss_pred             CChhhcc
Confidence            6666555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.1e-14  Score=124.17  Aligned_cols=126  Identities=22%  Similarity=0.218  Sum_probs=87.8

Q ss_pred             CCCcEEeeeCCCCC-CccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEe
Q 011891           89 SRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL  167 (475)
Q Consensus        89 ~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L  167 (475)
                      ++|++|++++|... ..+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45556666655433 25555556666666666666666655 55666666777777766644445555556788888888


Q ss_pred             cCCCCCCcc--hhhCCCCCCceeEeccCCccccch----HHhhcCCcccccccc
Q 011891          168 TDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSY  215 (475)
Q Consensus       168 ~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~l~~  215 (475)
                      ++|.+++++  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888854  778888999999999998887775    678888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=5.7e-16  Score=163.40  Aligned_cols=106  Identities=22%  Similarity=0.265  Sum_probs=94.5

Q ss_pred             CCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccC
Q 011891          114 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN  193 (475)
Q Consensus       114 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n  193 (475)
                      .|+.|++++|.++.+|. +..+++|+.|++++|. +..+|..++++++|+.|+|++|.++++| .++.+++|+.|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            58899999999999987 9999999999999987 4588888899999999999999999998 8899999999999999


Q ss_pred             Ccccc--chHHhhcCCcccccccccccccccC
Q 011891          194 NFERI--PESIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       194 ~l~~l--p~~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      +++.+  |..++.+++|+.|++++|+ ++.+|
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence            99887  8899999999999999985 44444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=1.2e-14  Score=157.96  Aligned_cols=156  Identities=24%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             cCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccC
Q 011891           76 TAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP  155 (475)
Q Consensus        76 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~  155 (475)
                      +.+...+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|. +..+|..
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~  288 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE  288 (727)
T ss_dssp             -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred             cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence            3344444455566666666666644 3355555556666666666666666666666666666666666665 3355666


Q ss_pred             CCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcC-CcccccccccccccccCCCccCcceec
Q 011891          156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLS-KLSSLLVSYCERLQSLPKLPCNLYWLD  233 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~-~L~~L~l~~c~~l~~lp~l~~~L~~L~  233 (475)
                      +.++++|+.|+|++|.++.+|..++.+++|+.|+|++|.++ .+|..+..+. .+..|++++|.....   +|..+..|+
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~---~p~~l~~l~  365 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP---LPHERRFIE  365 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC-----
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc---CccccceeE
Confidence            66666666666666666666666666667777777776665 3334443321 122345555543322   334455555


Q ss_pred             ccc
Q 011891          234 AQH  236 (475)
Q Consensus       234 i~~  236 (475)
                      +.+
T Consensus       366 l~~  368 (727)
T 4b8c_D          366 INT  368 (727)
T ss_dssp             ---
T ss_pred             eec
Confidence            443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=1.9e-15  Score=160.30  Aligned_cols=227  Identities=17%  Similarity=0.076  Sum_probs=157.3

Q ss_pred             ccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCc--ccCc
Q 011891            9 LSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE--ELPS   83 (475)
Q Consensus         9 L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~--~lp~   83 (475)
                      .+..+..+++|+.|+++++ ....+|  ..+..+++|++|+|++|. +..  ++. +..+++|++|+++ +.+.  .++.
T Consensus       262 ~~~~l~~~~~L~~L~l~~~-~~~~l~--~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~  336 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYM-GPNEMP--ILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV  336 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTC-CTTTGG--GGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred             HHHHhhccccccccCcccc-chhHHH--HHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH
Confidence            3456778889999999874 223333  346678899999999987 432  222 5788999999998 3333  3444


Q ss_pred             ccCCCCCCcEEeeeC----------CCCCCc--cccccCCCCCCcEEEeeCcCCcc-CCcccCC-CCCcCEEEcCC---C
Q 011891           84 SIGCLSRLLELNLGD----------CKNLKT--LPSSLCKLKSLEEICLTGSAIEE-LPSPIEC-LSALCVLDLGD---C  146 (475)
Q Consensus        84 ~i~~l~~L~~L~L~~----------c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~-l~~L~~L~L~~---c  146 (475)
                      ....+++|++|++++          |..++.  ++.....+++|++|+++.+.++. .+..+.. +++|+.|++++   |
T Consensus       337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence            456788999999995          666653  33334558899999998887772 3333443 78899999974   4


Q ss_pred             CCCCcccc------CCCCCCCCCEEEecCCC--CCC--cchhhCCCCCCceeEeccCCcc--ccchHHhhcCCccccccc
Q 011891          147 KSLKSLKL------PFDGLYSLTYLYLTDCA--ITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSSLLVS  214 (475)
Q Consensus       147 ~~l~~l~~------~~~~l~~L~~L~L~~~~--l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~l~  214 (475)
                      ..+...|.      .+.++++|+.|+++.|.  +++  +......+++|+.|++++|+++  .++..+..+++|++|+|+
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            45554332      24568889999998764  555  3333345888999999999886  456667888999999999


Q ss_pred             ccccccc--cCC---CccCcceecccccccCcc
Q 011891          215 YCERLQS--LPK---LPCNLYWLDAQHCTTLES  242 (475)
Q Consensus       215 ~c~~l~~--lp~---l~~~L~~L~i~~c~~L~~  242 (475)
                      +|. ++.  ++.   -.++|+.|++++|. ++.
T Consensus       497 ~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          497 GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            997 321  222   24688999999987 443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.47  E-value=2.3e-15  Score=159.65  Aligned_cols=192  Identities=19%  Similarity=0.115  Sum_probs=103.1

Q ss_pred             CcEEEEeCCCCCCC--CcC-cCCCCCCcEEEccccCCcc-----cCcccCCCCCCcEEeeeCCCCC----CccccccCCC
Q 011891           45 LVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNL----KTLPSSLCKL  112 (475)
Q Consensus        45 L~~L~L~~c~~l~~--~p~-i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l----~~lp~~l~~l  112 (475)
                      |++|+|++|..+..  ++. ...+++|++|+|++|.+..     ++.....+++|++|++++|...    ..++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            66666666542211  111 1255667777777665432     2223345666777777665432    2344445566


Q ss_pred             CCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCC---CccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeE
Q 011891          113 KSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSL---KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELY  189 (475)
Q Consensus       113 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l---~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~  189 (475)
                      ++|++|++++|.+..+|..+..+++|+.|+++++...   ......+..+++|+.|+++++....+|..+..+++|++|+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence            7777777777766666666666667777776643322   1122233455666666666655455666666666666666


Q ss_pred             eccCCcc--ccchHHhhcCCcccccccccccccccCC---CccCcceecccc
Q 011891          190 LERNNFE--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQH  236 (475)
Q Consensus       190 L~~n~l~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~~  236 (475)
                      +++|.++  .++..+..+++|+.|+++++..-..++.   ..++|+.|++.+
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            6666653  2223345666666666653322222221   124456666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.6e-13  Score=120.83  Aligned_cols=102  Identities=23%  Similarity=0.273  Sum_probs=67.0

Q ss_pred             CCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCC-CCCCCCCEEEecCCCCCCcch--hhCCCCCCceeEe
Q 011891          114 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYL  190 (475)
Q Consensus       114 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~-~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L  190 (475)
                      +|++|++++|.++.+ ..+..+++|+.|++++|. +..+|... ..+++|+.|++++|.++++|.  .+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            444444444444443 344444555555555544 22333222 566778888888888877776  6778888888888


Q ss_pred             ccCCccccchH----HhhcCCcccccccccc
Q 011891          191 ERNNFERIPES----IIRLSKLSSLLVSYCE  217 (475)
Q Consensus       191 ~~n~l~~lp~~----i~~l~~L~~L~l~~c~  217 (475)
                      ++|.++.+|..    +..+++|+.|++++|.
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            88888887764    7888888888888774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=1.5e-12  Score=117.68  Aligned_cols=125  Identities=30%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD  145 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~  145 (475)
                      ++++++++.++++|..+..  +|++|++++|. +..++.  .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3444444445444443322  45555555542 233332  245555566666666655544 34555566666666666


Q ss_pred             CCCCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCcc
Q 011891          146 CKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       146 c~~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      |......+..+.++++|+.|+|++|+++. .|..+..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            55433333445677778888888888887 4667778888888888888875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.5e-13  Score=118.66  Aligned_cols=123  Identities=25%  Similarity=0.331  Sum_probs=70.3

Q ss_pred             CCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-CCcccCCCCCcCEEE
Q 011891           66 GNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLD  142 (475)
Q Consensus        66 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~  142 (475)
                      ++|+.|++++|.+.  .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444444  444444455555555555542 2333 345555555555555555554 444444556666666


Q ss_pred             cCCCCCCCccc--cCCCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeEec
Q 011891          143 LGDCKSLKSLK--LPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLE  191 (475)
Q Consensus       143 L~~c~~l~~l~--~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~L~  191 (475)
                      +++|. +..++  ..+..+++|+.|++++|.++++|.    .+..+++|+.|+++
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66655 23322  445667778888888887777654    57778888888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=9e-14  Score=150.96  Aligned_cols=158  Identities=20%  Similarity=0.144  Sum_probs=105.1

Q ss_pred             CCCcEEEccccCCcccCcccCCCCCCcEEeeeC----CCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891           66 GNIEKILLDGTAIEELPSSIGCLSRLLELNLGD----CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  141 (475)
Q Consensus        66 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~----c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  141 (475)
                      +.++.|+|.++.+...+..+.....|..+.+..    +..+...|..+..++.|+.|++++|.+..+|..+..+++|+.|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            445666666666665555444444444444332    2344456778889999999999999999999999999999999


Q ss_pred             EcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccc
Q 011891          142 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQS  221 (475)
Q Consensus       142 ~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~  221 (475)
                      +|++|. +..+|..+.++++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+|..++.+++|+.|+|++|+....
T Consensus       253 ~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          253 YLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             BCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             EeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            999997 4488988899999999999999999999999999999999999999999998899999999999999975555


Q ss_pred             cCC
Q 011891          222 LPK  224 (475)
Q Consensus       222 lp~  224 (475)
                      +|.
T Consensus       332 ~p~  334 (727)
T 4b8c_D          332 FLK  334 (727)
T ss_dssp             HHH
T ss_pred             ChH
Confidence            554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=1.9e-13  Score=121.81  Aligned_cols=130  Identities=19%  Similarity=0.260  Sum_probs=75.0

Q ss_pred             CCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCccc-CCCCCcCEEEc
Q 011891           65 AGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLDL  143 (475)
Q Consensus        65 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L  143 (475)
                      +.+|++|++++|.++.++......++|++|++++|. +..+ ..+..+++|++|++++|.++.+|+.+ ..+++|+.|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            334444444444444443211112245555555432 2233 34455555555555555555555443 55566666666


Q ss_pred             CCCCCCCcccc--CCCCCCCCCEEEecCCCCCCcchh----hCCCCCCceeEeccCCccc
Q 011891          144 GDCKSLKSLKL--PFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFER  197 (475)
Q Consensus       144 ~~c~~l~~l~~--~~~~l~~L~~L~L~~~~l~~lp~~----l~~l~~L~~L~L~~n~l~~  197 (475)
                      ++|. +..+|.  .+..+++|+.|++++|.++.+|..    +..+++|+.|++++|.+..
T Consensus        96 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            6654 244443  456777888888888888877764    7888899999998887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=2.4e-12  Score=116.38  Aligned_cols=126  Identities=24%  Similarity=0.320  Sum_probs=90.4

Q ss_pred             cEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccCcc--cCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeC
Q 011891           46 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS--IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG  122 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~  122 (475)
                      +.+++++ +.++.+|. +.  .+|++|++++|.++.++..  ++.+++|++|+|++|......|..+..+++|++|++++
T Consensus        11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5566666 35566665 32  2777777777777766653  67777788888877655555566777788888888888


Q ss_pred             cCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891          123 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus       123 ~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      |.++.++.. +..+++|++|++++|......|..+..+++|+.|+|++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            888766553 6778888888888887655556677788888888888887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=3e-12  Score=115.82  Aligned_cols=124  Identities=27%  Similarity=0.321  Sum_probs=72.2

Q ss_pred             EEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCC
Q 011891           70 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKS  148 (475)
Q Consensus        70 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~  148 (475)
                      .++++++.++++|..+  .++|++|++++| .++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|..
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            4444555555555433  235555555553 234455555555555555555555555443 355555555566555553


Q ss_pred             CCccccCCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCcc
Q 011891          149 LKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       149 l~~l~~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~  196 (475)
                      ....+..+.++++|+.|+|++|.++.+|. .+..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            33333345667777777777777777655 4667788888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.40  E-value=1.7e-14  Score=153.00  Aligned_cols=199  Identities=20%  Similarity=0.253  Sum_probs=127.5

Q ss_pred             cCCCCCcEEeccCCCCccCCCChhhcc-CCCCCcEEEEeCCCCCCC--CcCc-CCCCCCcEEEccccCCcc-----cCcc
Q 011891           14 QHHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPEI-SSAGNIEKILLDGTAIEE-----LPSS   84 (475)
Q Consensus        14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~-~l~~L~~L~L~~c~~l~~--~p~i-~~l~~L~~L~L~~~~i~~-----lp~~   84 (475)
                      ..+++|++|+|++|. ++... +..+. .+++|++|+|++|..+..  ++.+ ..+++|++|++++|.+..     ++..
T Consensus       102 ~~~~~L~~L~L~~~~-~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMV-VTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HHCTTCCEEEEESCB-CCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             HhCCCCCeEEeeCcE-EcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            467889999999875 32221 12232 578899999988865554  4443 378888888888887553     3333


Q ss_pred             cCCCCCCcEEeeeCCC-CC--CccccccCCCCCCcEEEeeCc-CCccCCcccCCCCCcCEEEcCCCC-------------
Q 011891           85 IGCLSRLLELNLGDCK-NL--KTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCK-------------  147 (475)
Q Consensus        85 i~~l~~L~~L~L~~c~-~l--~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~c~-------------  147 (475)
                      ...+++|++|++++|. .+  ..++..+..+++|++|++++| .+..++..+..+++|+.|+++++.             
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            4467788888888875 11  112222345688888888877 444555666667777777654432             


Q ss_pred             ------CCCc-----------cccCCCCCCCCCEEEecCCCCCC--cchhhCCCCCCceeEeccCCcc--ccchHHhhcC
Q 011891          148 ------SLKS-----------LKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLS  206 (475)
Q Consensus       148 ------~l~~-----------l~~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~  206 (475)
                            .++.           ++.....+++|+.|++++|.+++  +...+..+++|+.|++++| +.  .++.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                  2222           11112356788888888888765  4455677888888888887 43  3333445678


Q ss_pred             Ccccccccc
Q 011891          207 KLSSLLVSY  215 (475)
Q Consensus       207 ~L~~L~l~~  215 (475)
                      +|+.|++.+
T Consensus       339 ~L~~L~L~~  347 (594)
T 2p1m_B          339 DLRELRVFP  347 (594)
T ss_dssp             TCCEEEEEC
T ss_pred             CCCEEEEec
Confidence            888888843

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=7.3e-12  Score=111.38  Aligned_cols=128  Identities=26%  Similarity=0.381  Sum_probs=77.0

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC  146 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c  146 (475)
                      +.+++++++++.+|..+  .++|++|++++|.. +.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            44555555555555433  24556666665442 3333 2345566666666666666655543 456666666666666


Q ss_pred             CCCCccccCCCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCccccc
Q 011891          147 KSLKSLKLPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIP  199 (475)
Q Consensus       147 ~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp  199 (475)
                      ......+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+...+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            53322222346677788888888888876654 467888888888888876433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=2.9e-12  Score=115.92  Aligned_cols=123  Identities=24%  Similarity=0.345  Sum_probs=105.0

Q ss_pred             cEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCC
Q 011891           92 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA  171 (475)
Q Consensus        92 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~  171 (475)
                      ++++++++ .++.+|..+.  ++|++|++++|.++.+|..+..+++|+.|++++|......+..+.++++|+.|+|++|.
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            57888874 5778887664  68999999999999999999999999999999998655455567899999999999999


Q ss_pred             CCCcc-hhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891          172 ITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       172 l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~  217 (475)
                      ++.++ ..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            99965 468899999999999999998885 47788999999988874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=2e-14  Score=152.48  Aligned_cols=223  Identities=17%  Similarity=0.116  Sum_probs=140.1

Q ss_pred             ccCCCCCcEEeccCCCCccCCCCh-------------hhccCCCCCcEEEEeCCCCCCCCcC-cC-CCCCCcEEEcccc-
Q 011891           13 VQHHGKLNQIIMAACNIFTKTPNP-------------SLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGT-   76 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p~~-------------~~~~~l~~L~~L~L~~c~~l~~~p~-i~-~l~~L~~L~L~~~-   76 (475)
                      +..+++|+.|++++|..+......             .....+++|++|+|++|..-...+. +. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            456789999999998766543210             1134678999999999752222222 43 6889999999988 


Q ss_pred             CCcc--cCcccCCCCCCcEEeeeCCCCCC----ccccccCCCCCCcEEEeeCcC--Cc--cCCcccCCCCCcCEEEcCCC
Q 011891           77 AIEE--LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSA--IE--ELPSPIECLSALCVLDLGDC  146 (475)
Q Consensus        77 ~i~~--lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~L~~c  146 (475)
                      .+..  ++....++++|++|++++|....    .++.....+++|++|++++|.  +.  .++..+..+++|+.|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5553  55555678999999999986222    233344577899999999886  22  22223345789999999998


Q ss_pred             CCCCccccCCCCCCCCCEEEecCCCC-------C------------------------CcchhhCCCCCCceeEeccCCc
Q 011891          147 KSLKSLKLPFDGLYSLTYLYLTDCAI-------T------------------------ELPESLGLLSSLEELYLERNNF  195 (475)
Q Consensus       147 ~~l~~l~~~~~~l~~L~~L~L~~~~l-------~------------------------~lp~~l~~l~~L~~L~L~~n~l  195 (475)
                      ..+..++..+..+++|+.|+++.+..       .                        .++..+..+++|+.|++++|.+
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence            66665655556677788887655421       1                        1333333456667777776665


Q ss_pred             c--ccchHHhhcCCcccccccccccccccCC---CccCcceeccc
Q 011891          196 E--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQ  235 (475)
Q Consensus       196 ~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~---l~~~L~~L~i~  235 (475)
                      +  .++..+..+++|+.|++++|..-..++.   ..++|+.|++.
T Consensus       302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence            4  2333345666777777766622111111   13456666663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=4e-14  Score=128.69  Aligned_cols=129  Identities=23%  Similarity=0.307  Sum_probs=71.9

Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL  159 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l  159 (475)
                      .+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|. +..+| .+..+
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l  114 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence            333344444445555554432 33344 4444555555555555555554444444455555555543 22233 34456


Q ss_pred             CCCCEEEecCCCCCCcch--hhCCCCCCceeEeccCCccccch-----------HHhhcCCccccc
Q 011891          160 YSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE-----------SIIRLSKLSSLL  212 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~-----------~i~~l~~L~~L~  212 (475)
                      ++|+.|++++|.+++++.  .+..+++|++|++++|.+...+.           .+..+++|+.|+
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            677777777777777554  67778888888888887754322           256667777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.1e-11  Score=121.77  Aligned_cols=190  Identities=14%  Similarity=0.155  Sum_probs=104.4

Q ss_pred             CCCCcEEeccCCCCc--c-----------------CCCChhhccC--------CCCCcEEEEeCCCCCCCCcC--cCCCC
Q 011891           16 HGKLNQIIMAACNIF--T-----------------KTPNPSLIQH--------LNKLVILNLSGCSKLKSLPE--ISSAG   66 (475)
Q Consensus        16 l~~L~~L~Ls~~~~l--~-----------------~~p~~~~~~~--------l~~L~~L~L~~c~~l~~~p~--i~~l~   66 (475)
                      +++|+.|||++++..  .                 .+|. ..+.+        +++|+.|+|.+  .++.+++  +..++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence            788999999987533  0                 2232 23456        78888888887  5777766  77888


Q ss_pred             CCcEEEccccCCcccCc-ccCCCCCCcEEeeeC-----------------CCCCC---------cccccc----------
Q 011891           67 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGD-----------------CKNLK---------TLPSSL----------  109 (475)
Q Consensus        67 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~-----------------c~~l~---------~lp~~l----------  109 (475)
                      +|+.|++.++.+..++. .+..+.++..+.+..                 |..++         .++..+          
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            88888888888776654 445555555554332                 11111         000000          


Q ss_pred             ------------------CCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCC-EEEec
Q 011891          110 ------------------CKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLT-YLYLT  168 (475)
Q Consensus       110 ------------------~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~-~L~L~  168 (475)
                                        ..+++|+.|++++|.++.+|. .+..+.+|+.+++.++  +..++. .+.++.+|+ .+++.
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence                              014555555555555555554 2455555555555554  333332 245555555 55555


Q ss_pred             CCCCCCcc-hhhCCCCCCceeEeccCCccccch-HHhhcCCcccc
Q 011891          169 DCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSL  211 (475)
Q Consensus       169 ~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L  211 (475)
                      + +++.++ .++..+++|+.+++++|+++.++. .+.++++|+.+
T Consensus       283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          283 A-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             T-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             c-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            5 444432 345555555555555555555542 34445555444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=1.3e-10  Score=103.17  Aligned_cols=125  Identities=25%  Similarity=0.386  Sum_probs=69.8

Q ss_pred             cEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCc
Q 011891           46 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGS  123 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~  123 (475)
                      +.+++++ ..+..+|. ...++|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|
T Consensus        10 ~~l~~~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNS-KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCS-SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecC-CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence            3444444 23444443 1124555555555555555442 3555666666666543 333332 3456666666666666


Q ss_pred             CCccCCcc-cCCCCCcCEEEcCCCCCCCccccC-CCCCCCCCEEEecCCCCCC
Q 011891          124 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus       124 ~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~-~~~l~~L~~L~L~~~~l~~  174 (475)
                      .++.+|.. +..+++|+.|++++|. +..+|.. +..+++|+.|++++|++..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66665553 4566666777776664 3344433 3567778888888887665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=3.7e-14  Score=128.95  Aligned_cols=126  Identities=23%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             CCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891           64 SAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL  143 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L  143 (475)
                      .+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.++.+| .+..+++|+.|++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred             cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence            3444444444444444444 34444444444444432 2334443333444455555544444443 3444445555555


Q ss_pred             CCCCCCCcccc--CCCCCCCCCEEEecCCCCCCc-ch----------hhCCCCCCceeEeccCCc
Q 011891          144 GDCKSLKSLKL--PFDGLYSLTYLYLTDCAITEL-PE----------SLGLLSSLEELYLERNNF  195 (475)
Q Consensus       144 ~~c~~l~~l~~--~~~~l~~L~~L~L~~~~l~~l-p~----------~l~~l~~L~~L~L~~n~l  195 (475)
                      ++|. +..++.  .+..+++|+.|++++|.+.+. |.          .+..+++|+.|+  ++.+
T Consensus       123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             SEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            5443 222221  234566666666666666543 21          256777788776  5544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=4.1e-10  Score=99.93  Aligned_cols=89  Identities=28%  Similarity=0.399  Sum_probs=50.9

Q ss_pred             CCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCccccC-CCCCCCCCEEEecCCCCCCcchh-hCCCCCCceeE
Q 011891          113 KSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPES-LGLLSSLEELY  189 (475)
Q Consensus       113 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~~-~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~  189 (475)
                      ++|++|++++|.++.+ |..+..+++|+.|+|++|. +..+|.. +.++++|+.|+|++|+++.+|.. +..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            3444444444444433 2234444444444444443 2223322 35667777777777777776654 77788888888


Q ss_pred             eccCCccccchHH
Q 011891          190 LERNNFERIPESI  202 (475)
Q Consensus       190 L~~n~l~~lp~~i  202 (475)
                      |++|.+...+..+
T Consensus       112 L~~N~~~c~~~~~  124 (174)
T 2r9u_A          112 LYNNPWDCECRDI  124 (174)
T ss_dssp             CCSSCBCTTBGGG
T ss_pred             eCCCCcccccccH
Confidence            8888877655433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=5.5e-10  Score=98.65  Aligned_cols=86  Identities=28%  Similarity=0.405  Sum_probs=50.3

Q ss_pred             CCCcEEEeeCcCCccC-CcccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCCCcch-hhCCCCCCceeE
Q 011891          113 KSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY  189 (475)
Q Consensus       113 ~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~  189 (475)
                      ++|++|++++|.++.+ |..+..+++|++|++++|.. ..++. .+.++++|+.|+|++|+++.+|. .+..+++|+.|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            3444444444444444 22344445555555554442 22222 34567777778888887777655 477788888888


Q ss_pred             eccCCccccc
Q 011891          190 LERNNFERIP  199 (475)
Q Consensus       190 L~~n~l~~lp  199 (475)
                      |++|.+...+
T Consensus       109 L~~N~~~c~c  118 (170)
T 3g39_A          109 LLNNPWDCAC  118 (170)
T ss_dssp             CCSSCBCTTB
T ss_pred             eCCCCCCCCc
Confidence            8888775433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=9.3e-10  Score=97.60  Aligned_cols=106  Identities=25%  Similarity=0.329  Sum_probs=58.2

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK  147 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~  147 (475)
                      +.++++++.++++|..+.  ++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            344555555555554432  4555555555443333344455566666666666666655554 3556666666666654


Q ss_pred             CCCccccC-CCCCCCCCEEEecCCCCCCcch
Q 011891          148 SLKSLKLP-FDGLYSLTYLYLTDCAITELPE  177 (475)
Q Consensus       148 ~l~~l~~~-~~~l~~L~~L~L~~~~l~~lp~  177 (475)
                       +..+|.. +..+++|+.|+|++|.+...+.
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             -cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence             3333332 5667777777777777665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=1.3e-09  Score=96.27  Aligned_cols=103  Identities=26%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK  147 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~  147 (475)
                      ++++++++.++++|..+  .++|++|+|++|......|..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            44555555555555443  25555555555433333344455566666666666666655553 3556666666666665


Q ss_pred             CCCcccc-CCCCCCCCCEEEecCCCCCC
Q 011891          148 SLKSLKL-PFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus       148 ~l~~l~~-~~~~l~~L~~L~L~~~~l~~  174 (475)
                      . ..++. .+..+++|+.|+|++|.+..
T Consensus        90 l-~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 L-KSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             C-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             c-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            3 33333 35667777777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=8.8e-11  Score=115.21  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=45.0

Q ss_pred             CCCCCEEEecCCCCCCcch-hhCCCCCCceeEeccCCccccc-hHHhhcCCcc-cccccccccccccC
Q 011891          159 LYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP-ESIIRLSKLS-SLLVSYCERLQSLP  223 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~-~L~l~~c~~l~~lp  223 (475)
                      +++|+.|+|++|+++.+|. .+..+++|+.|++.+| ++.++ .++..|.+|+ .+++.+  .++.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~  289 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIE  289 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence            6778888888888887654 4677888888888876 66666 4567777887 777765  455554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.95  E-value=2.1e-08  Score=101.02  Aligned_cols=217  Identities=13%  Similarity=0.148  Sum_probs=146.8

Q ss_pred             Ccccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc
Q 011891            5 NIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         5 ~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l   81 (475)
                      +++.+.. .+.++ +|+.+++..+  ++.++. ..+.++ +|+.+.+..  .++.++.  +..+++|+.+++.+|.++.+
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~-~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGD-MAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT--CCEECT-TTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred             ccCEehHhhcccC-CccEEEeCCC--ccEECH-HhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEe
Confidence            4555653 45554 6888888753  666665 234443 688888875  5677765  77889999999998888888


Q ss_pred             CcccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCcc-ccCCCCC
Q 011891           82 PSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL-KLPFDGL  159 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l-~~~~~~l  159 (475)
                      +.....+.+|+.+.+..  .++.++. .+.++++|+.+++..+ ++.++.....-.+|+.+.+...  +..+ ...+.++
T Consensus       196 ~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c  270 (401)
T 4fdw_A          196 PASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYC  270 (401)
T ss_dssp             CTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTC
T ss_pred             chhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCC
Confidence            87666678899988875  3666653 4667888998888763 5655543322378888888432  4444 3456788


Q ss_pred             CCCCEEEecCCCCC-----Cc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCCC---ccCc
Q 011891          160 YSLTYLYLTDCAIT-----EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNL  229 (475)
Q Consensus       160 ~~L~~L~L~~~~l~-----~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L  229 (475)
                      ++|+.+.+.++.+.     .+ +..+..+++|+.+++. +.++.++ ..+..|.+|+.+.|..+  ++.++.-   -.+|
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L  347 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGI  347 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCC
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCC
Confidence            88999988887665     33 3457788888888888 4476665 46677888888888543  5555431   1155


Q ss_pred             ceecccc
Q 011891          230 YWLDAQH  236 (475)
Q Consensus       230 ~~L~i~~  236 (475)
                      +.+++.+
T Consensus       348 ~~l~l~~  354 (401)
T 4fdw_A          348 KEVKVEG  354 (401)
T ss_dssp             CEEEECC
T ss_pred             CEEEEcC
Confidence            5555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=4.2e-08  Score=98.79  Aligned_cols=200  Identities=15%  Similarity=0.212  Sum_probs=149.1

Q ss_pred             Ccccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCcccC
Q 011891            5 NIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELP   82 (475)
Q Consensus         5 ~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~lp   82 (475)
                      +++.+.. .+.++ +|+.+.+..  .++.++. ..+.+|++|+.+++.+ +.+..++. .....+|+.+.|..+ ++.++
T Consensus       145 ~i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~  218 (401)
T 4fdw_A          145 GLKSIGDMAFFNS-TVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT-LKEIG  218 (401)
T ss_dssp             TCCEECTTTTTTC-CCCEEECCT--TCCEECS-STTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT-CCEEC
T ss_pred             CccEECHHhcCCC-CceEEEeCC--CccEehH-HHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc-hheeh
Confidence            3666654 35554 699999985  5666665 4578899999999988 46778877 223689999999854 77766


Q ss_pred             c-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC-cccCCCCCcCEEEcCCCCCC----Ccc-ccC
Q 011891           83 S-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL----KSL-KLP  155 (475)
Q Consensus        83 ~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l----~~l-~~~  155 (475)
                      . .+.++++|+.+.+.+  .++.++.....-.+|+.+.+. +.++.++ ..+..+++|+.+.+.++...    ..+ +..
T Consensus       219 ~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          219 SQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             TTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             hhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            5 677899999999986  467776554444789999994 4566664 46788999999999876532    122 345


Q ss_pred             CCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccccc
Q 011891          156 FDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c  216 (475)
                      +.++++|+.+.+.. +++.++ .++..+++|+.+.|..+ ++.+. .++..+ +|+.+.+.++
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence            68899999999984 577764 46778899999999654 66665 467778 9999999887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=8.3e-09  Score=101.67  Aligned_cols=96  Identities=22%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCccccccCCCCCCcEEEeeC-cCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchh
Q 011891          101 NLKTLPSSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES  178 (475)
Q Consensus       101 ~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~  178 (475)
                      .++.+|. +..+++|++|+|++ |.++.+|. .+..+++|+.|+|++|......|..+.++++|+.|+|++|+++.+|..
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            3444444 44445555555553 55554442 344555555555555542222233445666677777777777776554


Q ss_pred             hCCCCCCceeEeccCCccc
Q 011891          179 LGLLSSLEELYLERNNFER  197 (475)
Q Consensus       179 l~~l~~L~~L~L~~n~l~~  197 (475)
                      +.....|+.|+|.+|.+..
T Consensus        99 ~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTCSCCCCEEECCSSCCCC
T ss_pred             HcccCCceEEEeeCCCccC
Confidence            3333337777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=1.3e-10  Score=116.14  Aligned_cols=153  Identities=17%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             CCCcEEEEeCCCCCCCCc-----C-cC-CCCCCcEEEccccCCcc--cCcccCCCCCCcEEeeeCCCCCCccc----ccc
Q 011891           43 NKLVILNLSGCSKLKSLP-----E-IS-SAGNIEKILLDGTAIEE--LPSSIGCLSRLLELNLGDCKNLKTLP----SSL  109 (475)
Q Consensus        43 ~~L~~L~L~~c~~l~~~p-----~-i~-~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp----~~l  109 (475)
                      +.|+.|+|++|. +....     . +. ..++|++|+|++|.+..  +......+++|++|+|++|.....-.    ..+
T Consensus        72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            456667776653 32211     1 11 22566666666666542  11122234456666666653322111    111


Q ss_pred             -CCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCC-----
Q 011891          110 -CKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----  174 (475)
Q Consensus       110 -~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~-----  174 (475)
                       ...++|++|++++|.++.     ++..+...++|++|+|++|.....    +...+...++|+.|+|++|.+++     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             234556666666665542     223334444555555555542110    11112233445555555555443     


Q ss_pred             cchhhCCCCCCceeEeccCCcc
Q 011891          175 LPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       175 lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      ++..+...++|++|+|++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            2233333444555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.83  E-value=1.2e-08  Score=100.54  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             EEEeCCCCCCCCcCcCCCCCCcEEEccc-cCCcccCc-ccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCC
Q 011891           48 LNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI  125 (475)
Q Consensus        48 L~L~~c~~l~~~p~i~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  125 (475)
                      +++++.+.+..+|.+..+++|++|+|++ |.++.++. .++.+++|++|+|++|......|..+.++++|++|+|++|.+
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            3455433455555555555666666654 56665553 455666666666666533222333455666666666666666


Q ss_pred             ccCCcccCCCCCcCEEEcCCC
Q 011891          126 EELPSPIECLSALCVLDLGDC  146 (475)
Q Consensus       126 ~~lp~~i~~l~~L~~L~L~~c  146 (475)
                      +.+|..+.....|+.|+|.+|
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSS
T ss_pred             ceeCHHHcccCCceEEEeeCC
Confidence            655544322222444444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=4.8e-10  Score=111.88  Aligned_cols=153  Identities=18%  Similarity=0.180  Sum_probs=111.3

Q ss_pred             CCCCcEEEccccCCcc-----cCcccC-CCCCCcEEeeeCCCCCCccccc-cCCCCCCcEEEeeCcCCccC-----Cccc
Q 011891           65 AGNIEKILLDGTAIEE-----LPSSIG-CLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL-----PSPI  132 (475)
Q Consensus        65 l~~L~~L~L~~~~i~~-----lp~~i~-~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l-----p~~i  132 (475)
                      +++|+.|+|++|.+..     +...+. ..++|++|+|++|.....-... ...+++|++|++++|.++..     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4789999999999873     222333 3479999999998643322212 22356899999999998732     2222


Q ss_pred             -CCCCCcCEEEcCCCCCCC----ccccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----c
Q 011891          133 -ECLSALCVLDLGDCKSLK----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----R  197 (475)
Q Consensus       133 -~~l~~L~~L~L~~c~~l~----~l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~  197 (475)
                       ...++|++|+|++|....    .++..+..+++|+.|+|++|.+++     ++..+...++|+.|+|++|.++     .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             346789999999997322    122233567889999999999886     4666778889999999999986     3


Q ss_pred             cchHHhhcCCcccccccccc
Q 011891          198 IPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       198 lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +...+...++|+.|+|++|.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhCCCCCEEeccCCC
Confidence            45566778999999999985

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=1.4e-08  Score=100.65  Aligned_cols=60  Identities=15%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             CCCCCCEEEecCCCCCC-cchhh---CCCCCCceeEeccCCccc-----cchHHhhcCCcccccccccc
Q 011891          158 GLYSLTYLYLTDCAITE-LPESL---GLLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~-lp~~l---~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~l~~c~  217 (475)
                      .+++|+.|+|.+|.+.+ .+..+   ..+++|+.|+|+.|.++.     ++..+..+++|+.|++++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            46778888888887764 22222   356788888888887753     44455677888888888774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.62  E-value=2.7e-08  Score=98.65  Aligned_cols=156  Identities=13%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             ccCCCCCcEEEEeCCCC---------CCCCcC-cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccc
Q 011891           39 IQHLNKLVILNLSGCSK---------LKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS  108 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~---------l~~~p~-i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~  108 (475)
                      +..+++|+.|.+.+...         ...++. +..+++|+.|.|+++.-..++. + .+++|++|++..|.........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            34566777777754211         011222 3356677777776653123333 2 2667777777665432222122


Q ss_pred             c--CCCCCCcEEEeeCc--C------CccCCccc--CCCCCcCEEEcCCCCCCCccccC---CCCCCCCCEEEecCCCCC
Q 011891          109 L--CKLKSLEEICLTGS--A------IEELPSPI--ECLSALCVLDLGDCKSLKSLKLP---FDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus       109 l--~~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~L~~c~~l~~l~~~---~~~l~~L~~L~L~~~~l~  173 (475)
                      +  ..+++|++|+|+.+  .      +..+...+  ..+++|+.|++.+|......+..   ...+++|+.|+|+.|.++
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            2  25667777766421  1      11121222  23566777777666533211111   124566777777766666


Q ss_pred             C-----cchhhCCCCCCceeEeccCCcc
Q 011891          174 E-----LPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       174 ~-----lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +     ++..+..+++|+.|+|++|.++
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5     2333345566777777766654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=6e-06  Score=82.69  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             cCCCCCCcEEEccccCCcccCc-ccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEe
Q 011891           62 ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICL  120 (475)
Q Consensus        62 i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l  120 (475)
                      +..+.+|+.+.+.++. ..++. .+.++.+|+.+.+..+  ++.++. .+.++..|+.+.+
T Consensus       158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred             hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence            3456778888776542 33333 4566777887777542  333322 2334444444433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.15  E-value=3.2e-05  Score=77.28  Aligned_cols=82  Identities=11%  Similarity=0.119  Sum_probs=40.8

Q ss_pred             cccCCC-CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCC--CCCCCCcC--cCCCCCCcEEEccccCCcccCc-cc
Q 011891           12 SVQHHG-KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC--SKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SI   85 (475)
Q Consensus        12 ~~~~l~-~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c--~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~-~i   85 (475)
                      .+.+++ .|+.+.+-.  .++.+.+ ..+.+|.+|+.+.+.++  ..++.++.  +..+.+|+.+.+..+ ++.++. .+
T Consensus        58 aF~~~~~~L~sI~iP~--svt~Ig~-~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD--TVTEIGS-NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECT--TCCEECT-TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hccCCCCcCEEEEECC--CeeEEhH-HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            344553 477777754  3555554 34566777777776542  23444443  444555555444322 222222 23


Q ss_pred             CCCCCCcEEeee
Q 011891           86 GCLSRLLELNLG   97 (475)
Q Consensus        86 ~~l~~L~~L~L~   97 (475)
                      ..+.+|+.+.+.
T Consensus       134 ~~c~~L~~i~lp  145 (394)
T 4gt6_A          134 HHCEELDTVTIP  145 (394)
T ss_dssp             TTCTTCCEEECC
T ss_pred             hhhccccccccc
Confidence            344455555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=6.9e-07  Score=79.74  Aligned_cols=58  Identities=21%  Similarity=0.198  Sum_probs=36.1

Q ss_pred             CCCCCEEEecCCCCCC-----cchhhCCCCCCceeEe--ccCCcc-----ccchHHhhcCCccccccccc
Q 011891          159 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYL--ERNNFE-----RIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L--~~n~l~-----~lp~~i~~l~~L~~L~l~~c  216 (475)
                      .++|+.|+|++|.+++     +...+...++|++|+|  ++|.++     .+...+...++|++|++++|
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3556677777776665     4455666667777777  667664     24445555666666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=1.9e-06  Score=75.64  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC--cCcCCC----CCCcEEEcccc-CCcc-cCcccCCCC
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL--PEISSA----GNIEKILLDGT-AIEE-LPSSIGCLS   89 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~--p~i~~l----~~L~~L~L~~~-~i~~-lp~~i~~l~   89 (475)
                      +|+.||+++|. ++... +..+..+++|+.|+|++|..+++-  ..++.+    ++|++|+|++| .|+. --..+..++
T Consensus        62 ~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            46666666664 33321 233456666666666666555431  113332    24555555554 2441 001233455


Q ss_pred             CCcEEeeeCCCCCC
Q 011891           90 RLLELNLGDCKNLK  103 (475)
Q Consensus        90 ~L~~L~L~~c~~l~  103 (475)
                      +|++|++++|..++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            55555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=1.3e-06  Score=78.02  Aligned_cols=111  Identities=15%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             CCCCCCcEEeeeCCCCCC-----ccccccCCCCCCcEEEeeCcCCcc-----CCcccCCCCCcCEEEcCCCCCCCc----
Q 011891           86 GCLSRLLELNLGDCKNLK-----TLPSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS----  151 (475)
Q Consensus        86 ~~l~~L~~L~L~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----  151 (475)
                      ...++|++|+|++|..+.     .+...+...++|++|++++|.+..     +...+...++|++|+|++|..-..    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            344445555555442222     123334445555555655555541     223333445566666666653221    


Q ss_pred             cccCCCCCCCCCEEEe--cCCCCCC-----cchhhCCCCCCceeEeccCCcc
Q 011891          152 LKLPFDGLYSLTYLYL--TDCAITE-----LPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       152 l~~~~~~l~~L~~L~L--~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      +...+...++|+.|+|  ++|.+++     +...+...++|++|+|++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2223445667889999  7888886     4566677789999999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.97  E-value=7e-05  Score=74.80  Aligned_cols=58  Identities=21%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEcc
Q 011891           12 SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD   74 (475)
Q Consensus        12 ~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~   74 (475)
                      .+..+.+|+.+.|..  .++.+++ ..+.+|++|+.+++..  .++.++.  +..+.+|+.+.+.
T Consensus        66 AF~~c~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS--TVREIGE-FAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTCTTEEEEECCT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             HhhCCCCceEEEeCC--CccCcch-hHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence            466788888888864  4666665 4567888888888864  3555554  5566666655443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=5.8e-06  Score=72.59  Aligned_cols=17  Identities=18%  Similarity=0.182  Sum_probs=8.0

Q ss_pred             hhcCCcccccccccccc
Q 011891          203 IRLSKLSSLLVSYCERL  219 (475)
Q Consensus       203 ~~l~~L~~L~l~~c~~l  219 (475)
                      .++++|++|+|++|+.+
T Consensus       136 ~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             GGCTTCCEEEEESCTTC
T ss_pred             hcCCCCCEEECCCCCCC
Confidence            34445555555544433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.79  E-value=0.00073  Score=67.35  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=42.9

Q ss_pred             cCCCCCcCEEEcCCCCCCCcc-ccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCc
Q 011891          132 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKL  208 (475)
Q Consensus       132 i~~l~~L~~L~L~~c~~l~~l-~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L  208 (475)
                      +..+.+|+.+.+....  ..+ ...+.++.+|+.+.+. ..++.++ ..+..+.+|+.++|..+ ++.+. .++..|.+|
T Consensus       261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3445566666654321  111 1234566777777774 3455543 34556677777777543 44443 345666666


Q ss_pred             cccccc
Q 011891          209 SSLLVS  214 (475)
Q Consensus       209 ~~L~l~  214 (475)
                      +.+.|.
T Consensus       337 ~~i~ip  342 (394)
T 4gt6_A          337 ERIAIP  342 (394)
T ss_dssp             CEEEEC
T ss_pred             CEEEEC
Confidence            666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.64  E-value=0.002  Score=63.64  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             CCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccccc-hHHhhcCCccccccc
Q 011891          157 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS  214 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~  214 (475)
                      .++.+|+.+.+... +..++ ..+..+++|+.+.+.++.++.++ ..+.+|.+|+.+.|.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            45566666666432 44433 24566777777777777776665 456667777776663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.57  E-value=0.0025  Score=62.93  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             CCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccc
Q 011891          157 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSY  215 (475)
Q Consensus       157 ~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~  215 (475)
                      .++..|+.+.+..+ ++.+ ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.+
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence            34455555555443 3333 223445566666666432 33443 3445566666666643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.54  E-value=8.5e-05  Score=69.90  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=16.5

Q ss_pred             CCCCCCEEEecCCCCCCcchhhCCCC--CCceeEeccCCc
Q 011891          158 GLYSLTYLYLTDCAITELPESLGLLS--SLEELYLERNNF  195 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~L~~n~l  195 (475)
                      .+++|+.|+|++|.+.++. .+..+.  +|++|+|++|.+
T Consensus       194 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          194 KAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence            4445555555555554431 122222  455555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.37  E-value=9.7e-05  Score=69.53  Aligned_cols=77  Identities=27%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             CCCCCcEEEccccCCccc---CcccCCCCCCcEEeeeCCCCCCccccccCCCC--CCcEEEeeCcCCcc-CCc-------
Q 011891           64 SAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK--SLEEICLTGSAIEE-LPS-------  130 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~-------  130 (475)
                      .+++|+.|+|++|.|..+   +..+..+++|+.|+|++|. +..+. .+..+.  +|++|++++|.+.. +|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            455666666666665543   2344456666666666643 22221 222233  66777777766652 331       


Q ss_pred             ccCCCCCcCEEE
Q 011891          131 PIECLSALCVLD  142 (475)
Q Consensus       131 ~i~~l~~L~~L~  142 (475)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245566666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.99  E-value=0.004  Score=55.45  Aligned_cols=33  Identities=24%  Similarity=0.153  Sum_probs=17.1

Q ss_pred             CCCCEEEecCCCCCC-----cchhhCCCCCCceeEecc
Q 011891          160 YSLTYLYLTDCAITE-----LPESLGLLSSLEELYLER  192 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~  192 (475)
                      +.|+.|+|++|.|.+     +-+.+..-+.|+.|+|++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            345555555555554     334444445555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.55  E-value=0.015  Score=48.13  Aligned_cols=35  Identities=34%  Similarity=0.397  Sum_probs=18.2

Q ss_pred             CCCEEEecCCCCCCcchh-hCCCCCCceeEeccCCc
Q 011891          161 SLTYLYLTDCAITELPES-LGLLSSLEELYLERNNF  195 (475)
Q Consensus       161 ~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l  195 (475)
                      +|+.|+|++|+|+.+|.. +..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555554432 34455555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.40  E-value=0.0072  Score=53.82  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             CCCcCEEEcCCCCCCCc-----cccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----ccc
Q 011891          135 LSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIP  199 (475)
Q Consensus       135 l~~L~~L~L~~c~~l~~-----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp  199 (475)
                      -+.|++|+|+++..+..     +...+..-..|+.|+|++|.+.+     +...+..-+.|+.|+|++|.|.     .+-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            34566666665422221     11122344678889999998886     5566677788999999999885     344


Q ss_pred             hHHhhcCCccccccccc
Q 011891          200 ESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       200 ~~i~~l~~L~~L~l~~c  216 (475)
                      ..+..-..|+.|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            55666678888888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.11  E-value=0.075  Score=43.77  Aligned_cols=50  Identities=24%  Similarity=0.467  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCC--CCcC-cCCCCCCcEEEccccCCcccCcc-cCCCCCCcEEeeeCC
Q 011891           47 ILNLSGCSKLK--SLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDC   99 (475)
Q Consensus        47 ~L~L~~c~~l~--~~p~-i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c   99 (475)
                      .++.++ ..++  .+|. +.  ++|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            344444 3444  4553 22  3466666666666665542 344555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	475
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 40  QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDC 99
             L  L  L+L+G  +LK +  ++S  N+  + L    I  L   +  L++L EL LG  
Sbjct: 216 GILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 273

Query: 100 KNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL 159
           +     P +     +  E+        E  SPI  L  L  L L     +  +  P   L
Sbjct: 274 QISNISPLAGLTALTNLELNEN---QLEDISPISNLKNLTYLTLYFNN-ISDI-SPVSSL 328

Query: 160 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
             L  L+  +  ++++  SL  L+++  L    N    +   +  L++++ L ++ 
Sbjct: 329 TKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 9e-09
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 35  NPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 94
           +   +  L  L  L+L+   ++ +L  +S    + ++ L    I  +    G  +     
Sbjct: 233 DIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 95  NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 154
                +N     S +  LK+L  + L  + I ++  P+  L+ L  L   + K +  +  
Sbjct: 292 L---NENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVS- 345

Query: 155 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 193
               L ++ +L      I++L   L  L+ + +L L   
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 32/186 (17%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 53  CSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKL 112
            +++  +  +    N++++ L+G  ++++ + +  L+ L +L+L + +     P  L  L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 113 KSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 172
             L E+ L  + I  +       +   +      ++      P   L +LTYL L    I
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 173 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC--NLY 230
           +++   +  L+ L+ L+   N    +  S+  L+ ++ L   +  ++  L  L     + 
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRIT 376

Query: 231 WLDAQH 236
            L    
Sbjct: 377 QLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 154 LPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 213
           +    L  +T L      I  + + +  L++L ++    N    I   +  L+KL  +L+
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95

Query: 214 SYCERLQSLPKLPCNLYWLDAQHC 237
           +  +     P              
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFN 119

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 5/180 (2%)

Query: 55  KLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK 113
            L+ +P+     +   + L    I E+       L  L  L L + K  K  P +   L 
Sbjct: 21  GLEKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 114 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 173
            LE + L+ + ++ELP  +        +   +   ++           +  L       +
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 174 -ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWL 232
                +   +  L  + +   N   IP+ +     L+ L +   +  +        L  L
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 139 CVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFER 197
           C L +  C  L   K+P D       L L +  ITE+ +     L +L  L L  N   +
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 198 I-PESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFY 256
           I P +   L KL  L +S   +L+ LP+           H   +  +     +       
Sbjct: 70  ISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 257 LN 258
           + 
Sbjct: 129 VE 130

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 21/221 (9%)

Query: 1   MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP 60
           +P    + L E   H  ++ ++  +  N   +     L  +  K   +       +K L 
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 61  EISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 120
            I  A            I  +P  +     L EL+L   K  K   +SL  L +L ++ L
Sbjct: 154 YIRIADT---------NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES-- 178
           + ++I  + +     +        +   L  +         +  +YL +  I+ +  +  
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 179 -----LGLLSSLEELYLERN--NFERIPESIIR-LSKLSSL 211
                    +S   + L  N   +  I  S  R +   +++
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
            D   SL  L +++  + ELP        LE L    N+   +PE       L  L V Y
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEY 333

Query: 216 CERLQSLPKLPCNLYWL 232
              L+  P +P ++  L
Sbjct: 334 N-PLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 182 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLE 241
             SLEEL +  N    +P       +L  L+ S+   L  +P+LP NL  L  ++   L 
Sbjct: 283 PPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN-PLR 337

Query: 242 SLSGLFSS 249
               +  S
Sbjct: 338 EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 7/256 (2%)

Query: 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ 220
               L L +  ++ LPE       LE L    N+   +PE    L      L+     L+
Sbjct: 39  QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSL----KSLLVDNNNLK 91

Query: 221 SLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDALQNIQL 280
           +L  LP  L +L   +    +      SS+  +    N + K    L   +E        
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 281 MATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNKVFGFV 340
           +      +    ++      + +    ++P+   S   G++I  ++            + 
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 341 FCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYYFFNHQ 400
              ++                +  +      P  +       N       L    ++ + 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 401 DLNGCWEYNCVPEAVQ 416
             N       +P +++
Sbjct: 272 SSNEIRSLCDLPPSLE 287

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 30/99 (30%)

Query: 110 CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 169
               SLEE+ ++ + + ELP+                               L  L  + 
Sbjct: 281 DLPPSLEELNVSNNKLIELPA---------------------------LPPRLERLIASF 313

Query: 170 CAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKL 208
             + E+PE   L  +L++L++E N     P+    +  L
Sbjct: 314 NHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 94  LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK 153
           L+L       T+   L +L  +  + L+ + +  LP  +  L  L VL   D        
Sbjct: 3   LHLAH--KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--V 58

Query: 154 LPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSL 211
                L  L  L L +  + +    + L     L  L L+ N+  +      RL+++   
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 212 LVS 214
           + S
Sbjct: 119 VSS 121

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 34/276 (12%), Positives = 64/276 (23%), Gaps = 10/276 (3%)

Query: 161 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNF-----ERIPESIIRLSKLSSLLVSY 215
           SL    +T      +   L    S++E+ L  N         + E+I     L     S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 216 CERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENFKLDRKLRGIVEDAL 275
               +   ++P  L  L  Q       L     + +          +            L
Sbjct: 69  IFTGRVKDEIPEALRLL-LQALLKCPKL----HTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 276 QNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSITLKMQPGCFSNNK 335
           +++ L       +   KI+    +  V       P   S     + +            +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 336 VFGFVFCAIVAFRDHHVRDWSFKFYCEFKIKLKDCDPHVIQRYLGRVNYVEPDHLLLGYY 395
               +    +                      +     +       +        L  + 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 396 FFNHQDLNGCWEYNCVPEAVQFYFKKVLGSETETLD 431
                 LN C        AV   F K+     +TL 
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 279

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 173 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPC 227
             LP+ L  L  L  L +  NN          L +      +  + L   P   C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 73  LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI 132
           L    +E+L   +       +  L D K L++ P  L        +    S    L    
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQAL-DLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIE 61

Query: 133 ECLSALCVLDLGDCK--SLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELY 189
           E +  L  L+L + +   L  +        +L  L L+   +    E        LEEL+
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 190 LERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
           L+ N+           S   S +     +L  L
Sbjct: 122 LDGNSLSDTFRD---QSTYISAIRERFPKLLRL 151

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 56  LKSLPEISS--AGNIEKILLDGT--AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCK 111
           ++   E  S  A   EK+ L G    IE++ +++  L     L L    N++ +  SL  
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSG 68

Query: 112 LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 171
           +++L  + L  + I+++ +       L  L +   +      +       + Y+      
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128

Query: 172 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 222
                + L  L  LE+L L  N      +     S+    +V     L+ L
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/85 (10%), Positives = 16/85 (18%), Gaps = 4/85 (4%)

Query: 156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSY 215
           +        L L    I  +      L   + +    N   ++         L  L    
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLL 69

Query: 216 CERLQSLPKLPCNLYWLDAQHCTTL 240
               +           L       L
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELIL 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.52

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=4e-22  Score=192.79  Aligned_cols=233  Identities=20%  Similarity=0.254  Sum_probs=170.7

Q ss_pred             ccccc-----CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCC-CCcC-cCCCCCCcEEEccccCCccc-
Q 011891           10 SESVQ-----HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLPE-ISSAGNIEKILLDGTAIEEL-   81 (475)
Q Consensus        10 ~~~~~-----~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~-~~p~-i~~l~~L~~L~L~~~~i~~l-   81 (475)
                      |.|+.     .-.+++.|+|+++..-...+.+..++++++|++|+|++|+.+. .+|. ++++++|++|+|++|++..+ 
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc
Confidence            66654     2235777888875432221222467788888888888754443 6776 77888888888888887754 


Q ss_pred             CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCc-cCCcccCCCCCc-CEEEcCCCC------------
Q 011891           82 PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSAL-CVLDLGDCK------------  147 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L-~~L~L~~c~------------  147 (475)
                      +..+..+.+|+++++++|.....+|..+++++.|+.+++++|.+. .+|..+..+.++ +.+++++|.            
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            445677788888888887777777777888888888888887776 567666666554 556655543            


Q ss_pred             -----------CCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc-ccchHHhhcCCcccccccc
Q 011891          148 -----------SLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSY  215 (475)
Q Consensus       148 -----------~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~l~~  215 (475)
                                 ....+|..+..+++|+.++++++.+...+..++.+++|+.|++++|+++ .+|..++++++|++|+|++
T Consensus       198 ~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence                       2223444556788999999999999887677899999999999999998 8999999999999999999


Q ss_pred             cccccccCCC--ccCcceecccccccCcc
Q 011891          216 CERLQSLPKL--PCNLYWLDAQHCTTLES  242 (475)
Q Consensus       216 c~~l~~lp~l--~~~L~~L~i~~c~~L~~  242 (475)
                      |+.-..+|++  ..+|+.+++.+.+.|..
T Consensus       278 N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         278 NNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CcccccCCCcccCCCCCHHHhCCCccccC
Confidence            9766688875  35677777777655543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-19  Score=170.38  Aligned_cols=194  Identities=22%  Similarity=0.206  Sum_probs=116.2

Q ss_pred             CCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891           16 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   93 (475)
Q Consensus        16 l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   93 (475)
                      ...+..++.++ +.++.+|.  .+.  ++|++|+|++| .+..+|.  +..+++|++|+|++|.|+.++. ++.+++|++
T Consensus         9 ~~~~~~v~C~~-~~L~~iP~--~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDK-RNLTALPP--DLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTT-SCCSSCCS--CCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCE
T ss_pred             cCCCeEEEccC-CCCCeeCc--CcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-ccccccccc
Confidence            34445555555 34556653  121  35666666663 4555543  5566666666666666666553 355666666


Q ss_pred             EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCC
Q 011891           94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI  172 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l  172 (475)
                      |++++| .+...+..+..+++|+.|+++++.+..++. .+..+.+++.|++++|.....-+..+..+++|+.|++++|++
T Consensus        82 L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            666665 344555556666666666666666665443 345566666666666653322223345566677777777777


Q ss_pred             CCcc-hhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccc
Q 011891          173 TELP-ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       173 ~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~  217 (475)
                      +.++ ..+..+++|++|+|++|+|+++|..+..+++|+.|+|++|+
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            6654 34566677777777777777777666666777777776653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=8e-19  Score=168.56  Aligned_cols=227  Identities=18%  Similarity=0.221  Sum_probs=171.9

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC-cCCCCCCcEEEccccCCccc
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL   81 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~-i~~l~~L~~L~L~~~~i~~l   81 (475)
                      +.+++++|.++.  ++|++|+|++| .++++|. ..+.++++|++|++++|....-.|. +..+++|++|++++|.++.+
T Consensus        19 ~~~L~~lP~~l~--~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l   94 (305)
T d1xkua_          19 DLGLEKVPKDLP--PDTALLDLQNN-KITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL   94 (305)
T ss_dssp             TSCCCSCCCSCC--TTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             CCCCCccCCCCC--CCCCEEECcCC-cCCCcCh-hHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC
Confidence            346888887763  68999999986 5777775 3577889999999999765544454 77899999999999999888


Q ss_pred             CcccCCCCCCcEEeeeCCCCCC--------------------------ccccccCCCCCCcEEEeeCcCCccCCcccCCC
Q 011891           82 PSSIGCLSRLLELNLGDCKNLK--------------------------TLPSSLCKLKSLEEICLTGSAIEELPSPIECL  135 (475)
Q Consensus        82 p~~i~~l~~L~~L~L~~c~~l~--------------------------~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l  135 (475)
                      |..+  ...+..|.+.++....                          ..+..+..+++|+.++++++.+..+|..+  +
T Consensus        95 ~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~  170 (305)
T d1xkua_          95 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--P  170 (305)
T ss_dssp             CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--C
T ss_pred             ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--C
Confidence            8653  3466666666543211                          11223456778888888888888877654  5


Q ss_pred             CCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCccccchHHhhcCCccccccc
Q 011891          136 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS  214 (475)
Q Consensus       136 ~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~  214 (475)
                      ++|+.|++++|......+..+.+++.++.|++++|.++++ +..+..+++|++|+|++|+++++|.++..+++|+.|+++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            7889999998887777777778888899999999988885 556778889999999999999998888889999999999


Q ss_pred             ccccccccCC----------CccCcceecccccc
Q 011891          215 YCERLQSLPK----------LPCNLYWLDAQHCT  238 (475)
Q Consensus       215 ~c~~l~~lp~----------l~~~L~~L~i~~c~  238 (475)
                      +| .++.++.          .+.+|+.|++.+++
T Consensus       251 ~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         251 NN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            87 4666653          23567777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-18  Score=164.42  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=112.7

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccC
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELP   82 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp   82 (475)
                      +.+|+.+|.++.  ++|++|+|++| .++.+|. ..+.++++|++|+|++| .+..+|.++.+++|++|+|++|.++.++
T Consensus        19 ~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          19 KRNLTALPPDLP--KDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             TSCCSSCCSCCC--TTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCeeCcCcC--cCCCEEECcCC-cCCCcCH-HHhhccccccccccccc-cccccccccccccccccccccccccccc
Confidence            445566665542  45666666664 3444442 34556666666666664 4556666666666666666666666666


Q ss_pred             cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-cCCCCCcCEEEcCCCCCCCccccCCCCCCC
Q 011891           83 SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYS  161 (475)
Q Consensus        83 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~  161 (475)
                      ..+..+++|++|+++++......+..+..+.++++|++++|.++.+|.. +..+++|+.|++++|......+..+..+++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccc
Confidence            6666666666666666554444444455566666666666666665543 344666666666666533323334556666


Q ss_pred             CCEEEecCCCCCCcchhhCCCCCCceeEeccCCc
Q 011891          162 LTYLYLTDCAITELPESLGLLSSLEELYLERNNF  195 (475)
Q Consensus       162 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l  195 (475)
                      |+.|+|++|+++.+|..+..+++|+.|+|++|.+
T Consensus       174 L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            6666666666666666666666666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5.8e-18  Score=167.09  Aligned_cols=229  Identities=24%  Similarity=0.383  Sum_probs=136.6

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      +++++|+.| +|++.+++|++|+|++| .+++++.   ++++++|++|++++| .+..+++++.+++|+.|+++++.++.
T Consensus        51 l~~~~I~~l-~gl~~L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n-~i~~i~~l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          51 ADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             CCSSCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-cccccCCCCCEEeCcCC-cCCCCcc---ccCCccccccccccc-cccccccccccccccccccccccccc
Confidence            356677777 67888888888888886 4666653   677888888888885 46677778888888888887665442


Q ss_pred             cCc----------------------------------------------------------------ccCCCCCCcEEee
Q 011891           81 LPS----------------------------------------------------------------SIGCLSRLLELNL   96 (475)
Q Consensus        81 lp~----------------------------------------------------------------~i~~l~~L~~L~L   96 (475)
                      ++.                                                                ....+++++.+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l  204 (384)
T d2omza2         125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA  204 (384)
T ss_dssp             CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeec
Confidence            211                                                                1223345555555


Q ss_pred             eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcc
Q 011891           97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP  176 (475)
Q Consensus        97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp  176 (475)
                      ++|. +..++. ...+++|++|++++|.++.++ .+..+++|+.|++++|.. ..++ .+..+++|+.|+++++.+++++
T Consensus       205 ~~n~-i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~L~l~~~~l~~~~  279 (384)
T d2omza2         205 TNNQ-ISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNIS  279 (384)
T ss_dssp             CSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred             cCCc-cCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCcc-CCCC-cccccccCCEeeccCcccCCCC
Confidence            5543 222222 334566777777777666654 455667777777776653 3332 2455666666666666655543


Q ss_pred             h---------------------hhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcceec
Q 011891          177 E---------------------SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLD  233 (475)
Q Consensus       177 ~---------------------~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~  233 (475)
                      .                     .+..+++++.|++++|+++.++ .+..+++|++|++++| .++.++.+  .++|++|+
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~  357 (384)
T d2omza2         280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLS  357 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEE
Confidence            2                     2344455566666666665554 2555666666666665 34444332  24566666


Q ss_pred             ccccccCccc
Q 011891          234 AQHCTTLESL  243 (475)
Q Consensus       234 i~~c~~L~~l  243 (475)
                      ++++ .++.+
T Consensus       358 l~~N-~l~~l  366 (384)
T d2omza2         358 AGHN-QISDL  366 (384)
T ss_dssp             CCSS-CCCBC
T ss_pred             CCCC-cCCCC
Confidence            6544 34443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=3e-19  Score=172.35  Aligned_cols=195  Identities=17%  Similarity=0.230  Sum_probs=147.1

Q ss_pred             CCCcEEEEeCCCCCC--CCcC-cCCCCCCcEEEccc-cCCc-ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcE
Q 011891           43 NKLVILNLSGCSKLK--SLPE-ISSAGNIEKILLDG-TAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE  117 (475)
Q Consensus        43 ~~L~~L~L~~c~~l~--~~p~-i~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~  117 (475)
                      .+++.|+|+++..-+  .+|+ ++++++|++|+|++ |.+. .+|..++++++|++|+|++|......+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999975444  4666 89999999999987 6777 79999999999999999998877777777889999999


Q ss_pred             EEeeCcCCc-cCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCC-CEEEecCCCCCC---------------------
Q 011891          118 ICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL-TYLYLTDCAITE---------------------  174 (475)
Q Consensus       118 L~l~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L-~~L~L~~~~l~~---------------------  174 (475)
                      ++++.|.+. .+|..+..+++|+.+++++|.....+|..+..+..+ +.+++++|+++.                     
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999776 678899999999999999998777777766666554 677777776553                     


Q ss_pred             ---cchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC---ccCcceeccccc
Q 011891          175 ---LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC  237 (475)
Q Consensus       175 ---lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l---~~~L~~L~i~~c  237 (475)
                         +|..+..+++|+.|++++|.+...+..+..+++|+.|++++|+....+|.-   .++|++|+++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence               233445556666666666666544445666666677777666544455542   245666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.9e-18  Score=159.95  Aligned_cols=210  Identities=22%  Similarity=0.325  Sum_probs=149.3

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEcc-ccCCc
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD-GTAIE   79 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~-~~~i~   79 (475)
                      +.+++.+|..+.  +++++|+|++| .++.+|. ..+.++++|++|+++++ .+..++.  +..+..++.+... .+.++
T Consensus        20 ~~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          20 QQGLQAVPVGIP--AASQRIFLHGN-RISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             SSCCSSCCTTCC--TTCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CCCCCccCCCCC--CCCCEEECcCC-cCCCCCH-HHhhccccccccccccc-cccccccccccccccccccccccccccc
Confidence            455777776553  56788888885 4666664 34677788888888874 4555544  4567777777664 34566


Q ss_pred             cc-CcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCccccCCC
Q 011891           80 EL-PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFD  157 (475)
Q Consensus        80 ~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~~~~  157 (475)
                      .+ +..+.++++|++|++++|......+..+..+.+|+.+++++|.++.+|. .+..+++|+.|++++|......+..+.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            65 4467778888888888876544445556677788888888888887764 466778888888888764333344557


Q ss_pred             CCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccc
Q 011891          158 GLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~  217 (475)
                      ++++|+.+++++|++++ .|..+..+++|++|++++|.+..++ ..++.+++|++|++++|+
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            78888888888888887 4677788888888888888887665 467778888888887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=4.2e-17  Score=156.34  Aligned_cols=214  Identities=21%  Similarity=0.292  Sum_probs=162.1

Q ss_pred             CCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCccc-CcccCCCCCCcEE
Q 011891           18 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL   94 (475)
Q Consensus        18 ~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L   94 (475)
                      .++.+|=++ ..++.+|.  .+.  +.+++|+|++| .++.+|+  +..+++|++|++++|.+..+ |..+.++++|++|
T Consensus        11 ~~~~~~C~~-~~L~~lP~--~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          11 HLRVVQCSD-LGLEKVPK--DLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             ETTEEECTT-SCCCSCCC--SCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCEEEecC-CCCCccCC--CCC--CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEe
Confidence            345666555 46888885  332  68999999995 6888875  78999999999999999987 4578999999999


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCC---------------------------cccCCCCCcCEEEcCCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP---------------------------SPIECLSALCVLDLGDCK  147 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp---------------------------~~i~~l~~L~~L~L~~c~  147 (475)
                      ++++| .++.+|..+  ...++.|++..+.+..++                           ..+..+++|+.+++++|.
T Consensus        85 ~l~~n-~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          85 YLSKN-QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             ECCSS-CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             cccCC-ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            99997 477787643  356777777766554332                           223456778888888776


Q ss_pred             CCCccccCCCCCCCCCEEEecCCCCCC-cchhhCCCCCCceeEeccCCccccc-hHHhhcCCcccccccccccccccCC-
Q 011891          148 SLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK-  224 (475)
Q Consensus       148 ~l~~l~~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~-  224 (475)
                       +..++..  .+++|+.|++++|..+. .+..+..++.++.|++++|.++.++ ..+..+++|+.|++++| .++.+|. 
T Consensus       162 -l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~  237 (305)
T d1xkua_         162 -ITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGG  237 (305)
T ss_dssp             -CCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred             -ccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccc
Confidence             3334433  36788999999988877 5667888899999999999998764 66788999999999998 5677764 


Q ss_pred             C--ccCcceecccccccCccccC
Q 011891          225 L--PCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       225 l--~~~L~~L~i~~c~~L~~l~~  245 (475)
                      +  .++|++|+++++ +++.++.
T Consensus       238 l~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         238 LADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCT
T ss_pred             cccccCCCEEECCCC-ccCccCh
Confidence            2  368899999886 5777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-17  Score=156.62  Aligned_cols=193  Identities=25%  Similarity=0.340  Sum_probs=164.5

Q ss_pred             CCCCCcccccc-cccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccC
Q 011891            1 MPHSNIEQLSE-SVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA   77 (475)
Q Consensus         1 l~~s~l~~L~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~   77 (475)
                      |++|+|+.++. .+..+++|++|+++++. ++.++. ....++..++.+....+..+..++.  +..+++|++|++++|.
T Consensus        39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~  116 (284)
T d1ozna_          39 LHGNRISHVPAASFRACRNLTILWLHSNV-LARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (284)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCcCCCCCHHHhhcccccccccccccc-cccccc-ccccccccccccccccccccccccchhhcccccCCEEecCCcc
Confidence            67899999985 58999999999999864 555543 3566788999999888888888865  7799999999999999


Q ss_pred             CcccCc-ccCCCCCCcEEeeeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc-ccCCCCCcCEEEcCCCCCCCcccc
Q 011891           78 IEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        78 i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~l~~  154 (475)
                      +..++. .+....+|+.+++++|. ++.+| ..+..+++|+.|++++|.++.+++ .+..+++|+.+++++|......|.
T Consensus       117 ~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         117 LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChh
Confidence            887654 56678999999999965 55564 567789999999999999998764 678899999999999997777788


Q ss_pred             CCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCcc
Q 011891          155 PFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       155 ~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~  196 (475)
                      .+.++++|+.|++++|.+..++ ..++.+++|++|++++|.+.
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            8899999999999999999954 67889999999999999886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.8e-17  Score=161.13  Aligned_cols=223  Identities=22%  Similarity=0.352  Sum_probs=152.8

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCC---------------------
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---------------------   59 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~---------------------   59 (475)
                      +++|+|+.++. ++.+++|++|++++|. +..++   .+.++++|+.|+++++... .+                     
T Consensus        73 Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~---~l~~l~~L~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  146 (384)
T d2omza2          73 FSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT---PLANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTISD  146 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEECC
T ss_pred             CcCCcCCCCcc-ccCCcccccccccccc-ccccc---ccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            57889999974 8999999999999975 45544   3677888888888664321 10                     


Q ss_pred             --------------------------------------------cCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEe
Q 011891           60 --------------------------------------------PEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN   95 (475)
Q Consensus        60 --------------------------------------------p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~   95 (475)
                                                                  .....+++++.++++++.++.++. ....++|++|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~  225 (384)
T d2omza2         147 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELS  225 (384)
T ss_dssp             CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             cccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEE
Confidence                                                        012234566777777776665543 34556677777


Q ss_pred             eeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCcc--------------------ccC
Q 011891           96 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSL--------------------KLP  155 (475)
Q Consensus        96 L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l--------------------~~~  155 (475)
                      +++|. ++.++ .+..+++|+.|++++|.++.++. +..+++|+.|+++++......                    ...
T Consensus       226 l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~  302 (384)
T d2omza2         226 LNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP  302 (384)
T ss_dssp             CCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCC-CCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc
Confidence            76653 44443 35566666667766666665543 555666666666655422110                    112


Q ss_pred             CCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCC--ccCcceec
Q 011891          156 FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLD  233 (475)
Q Consensus       156 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~  233 (475)
                      +..+++++.|++++|++++++. +..+++|+.|++++|+++.++ .+..+++|++|++++| .++.++.+  .++|+.|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~  379 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLG  379 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred             cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEee
Confidence            3567889999999999999864 788999999999999999887 5899999999999988 45665533  24666666


Q ss_pred             ccc
Q 011891          234 AQH  236 (475)
Q Consensus       234 i~~  236 (475)
                      +++
T Consensus       380 L~~  382 (384)
T d2omza2         380 LND  382 (384)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.2e-17  Score=150.44  Aligned_cols=187  Identities=21%  Similarity=0.333  Sum_probs=81.4

Q ss_pred             CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEE
Q 011891           15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   94 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   94 (475)
                      .+.+|+.|++.+|. ++.++   ++.++++|++|++++| .+..++.+..+++|+++++++|.++.++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~---~l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTG-VTTIE---GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCC-CCcch---hHhcCCCCcEeecCCc-eeeccccccccccccccccccccccccc-ccccccccccc
Confidence            34455555555442 23222   2444555555555553 2334444445555555555555444433 23445555555


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      .+++|.... ++ .+...+.++.+.++++.+.... .+...++|+.|++++|..... + .++++++|+.|++++|++++
T Consensus       113 ~l~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc-cc-hhccccchhhhhchhhhhchhh-hhccccccccccccccccccc-h-hhcccccceecccCCCccCC
Confidence            554443221 11 2333444444554444443322 133344445555444432211 1 13344445555555544444


Q ss_pred             cchhhCCCCCCceeEeccCCccccchHHhhcCCccccccc
Q 011891          175 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVS  214 (475)
Q Consensus       175 lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~  214 (475)
                      ++. +..+++|++|+|++|+++.++ .++++++|+.|+++
T Consensus       188 l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred             Chh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEee
Confidence            432 344444555555555444444 24444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.1e-17  Score=147.98  Aligned_cols=166  Identities=27%  Similarity=0.378  Sum_probs=124.8

Q ss_pred             CCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891           41 HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL  120 (475)
Q Consensus        41 ~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l  120 (475)
                      .+.+|+.|++++| .++.++.+..+++|++|++++|.++.++. ++.+++|++|++++| .++.+| .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCC-CCCCchhHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-cccccc-ccccccccccccc
Confidence            4567777888774 56666667778888888888888777663 567888888888875 456666 4777888888888


Q ss_pred             eCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch
Q 011891          121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE  200 (475)
Q Consensus       121 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~  200 (475)
                      +++.+..++ .+..+++|+.+++++|... ..+ ....+++|+.+++++|.+++++. +..+++|+.|++++|+++.+| 
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~l~-~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-  194 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-  194 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred             ccccccccc-ccccccccccccccccccc-ccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-
Confidence            888776654 4667778888888777633 222 34567888999999998888764 788889999999999888887 


Q ss_pred             HHhhcCCcccccccc
Q 011891          201 SIIRLSKLSSLLVSY  215 (475)
Q Consensus       201 ~i~~l~~L~~L~l~~  215 (475)
                      .+..+++|+.|+|++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            578888888888864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=6.9e-16  Score=149.76  Aligned_cols=226  Identities=22%  Similarity=0.280  Sum_probs=136.8

Q ss_pred             CCCCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcc
Q 011891            1 MPHSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE   80 (475)
Q Consensus         1 l~~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~   80 (475)
                      |++++|..+|+.   .++|++|+|+++ .++++|..     +.+|+.|+++++ .+..++.+.  +.|++|++++|.+..
T Consensus        45 Ls~~~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~~-----~~~L~~L~l~~n-~l~~l~~lp--~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          45 LNNLGLSSLPEL---PPHLESLVASCN-SLTELPEL-----PQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNNQLEK  112 (353)
T ss_dssp             CTTSCCSCCCSC---CTTCSEEECCSS-CCSSCCCC-----CTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSSCCSS
T ss_pred             eCCCCCCCCCCC---CCCCCEEECCCC-CCcccccc-----hhhhhhhhhhhc-ccchhhhhc--ccccccccccccccc
Confidence            456667777653   456777777764 56666641     346777777774 455555432  457778888777777


Q ss_pred             cCcccCCCCCCcEEeeeCCCCCCcc------------------ccccCCCCCCcEEEeeCcCCccCC-------------
Q 011891           81 LPSSIGCLSRLLELNLGDCKNLKTL------------------PSSLCKLKSLEEICLTGSAIEELP-------------  129 (475)
Q Consensus        81 lp~~i~~l~~L~~L~L~~c~~l~~l------------------p~~l~~l~~L~~L~l~~~~i~~lp-------------  129 (475)
                      +|. ++.+++|++|+++++......                  +..+..++.++.|++.++.....+             
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~  191 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  191 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccc
Confidence            774 567777888877765422110                  112344555666666655433222             


Q ss_pred             ------cccCCCCCcCEEEcCCCCCCCccccCC-----------------CCCCCCCEEEecCCCCCC---c--------
Q 011891          130 ------SPIECLSALCVLDLGDCKSLKSLKLPF-----------------DGLYSLTYLYLTDCAITE---L--------  175 (475)
Q Consensus       130 ------~~i~~l~~L~~L~L~~c~~l~~l~~~~-----------------~~l~~L~~L~L~~~~l~~---l--------  175 (475)
                            .....++.|+.+++++|.... ++...                 .....+...++..+.+..   +        
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~  270 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN  270 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccc
Confidence                  123445667777777654322 11110                 111223333333322211   1        


Q ss_pred             ------chhhCCCCCCceeEeccCCccccchHHhhcCCcccccccccccccccCCCccCcceecccccccCccccC
Q 011891          176 ------PESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       176 ------p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~~  245 (475)
                            +.....+++|++|+|++|+++.+|..   +++|+.|++++| .++++|+.+.+|++|++++|+ |+.++.
T Consensus       271 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             cccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-CCCCCc
Confidence                  11123457899999999999988853   678999999887 578899988999999999986 888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=146.56  Aligned_cols=189  Identities=23%  Similarity=0.374  Sum_probs=153.7

Q ss_pred             hhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCc
Q 011891           37 SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE  116 (475)
Q Consensus        37 ~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~  116 (475)
                      .....+.+|+.|++.+| .+++++.+..+++|++|++++|.+..++. +..+++|+++++++|. .+.++ .+..+++|+
T Consensus        35 ~~~~~l~~L~~L~l~~~-~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~  110 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIK  110 (227)
T ss_dssp             ECHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCC
T ss_pred             CCHHHcCCcCEEECCCC-CCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccc-ccccccccc
Confidence            34566788999999996 57888889999999999999999988764 8899999999999874 45665 578999999


Q ss_pred             EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                      .++++++....++ .+.....++.+.++++......  .+.++++|+.|++++|.+.+.+. ++.+++|+.|++++|+++
T Consensus       111 ~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         111 TLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccc-hhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh-hcccccceecccCCCccC
Confidence            9999998877653 3566788999999887754332  34678899999999999988654 788999999999999999


Q ss_pred             ccchHHhhcCCcccccccccccccccCCC--ccCcceeccc
Q 011891          197 RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQ  235 (475)
Q Consensus       197 ~lp~~i~~l~~L~~L~l~~c~~l~~lp~l--~~~L~~L~i~  235 (475)
                      .++. ++++++|++|++++| .++.++.+  .++|+.|+++
T Consensus       187 ~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             CChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            8874 889999999999999 57777642  3455555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.3e-16  Score=141.61  Aligned_cols=162  Identities=22%  Similarity=0.432  Sum_probs=107.0

Q ss_pred             CCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEe
Q 011891           41 HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL  120 (475)
Q Consensus        41 ~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l  120 (475)
                      .+.+|++|++++| .+.+++.+..+++|++|++++|.++.++. ++++++|++|++++|. ...++ .+.+++.|+.|++
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCC-CCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccc-ccccc-ccccccccccccc
Confidence            4556677777774 45566666667777777777777766654 6677777777777654 34444 3666777777777


Q ss_pred             eCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCccccch
Q 011891          121 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE  200 (475)
Q Consensus       121 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~  200 (475)
                      +++.+..++ .+..+++|+.|++++|. +..++ .+..+++|+.|++.+|.+++++ .++.+++|+.|++++|+++.++ 
T Consensus       114 ~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-  188 (199)
T d2omxa2         114 FNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-  188 (199)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-
Confidence            766665543 35566777777777665 33333 3456777778888777777765 3677788888888888777765 


Q ss_pred             HHhhcCCcccc
Q 011891          201 SIIRLSKLSSL  211 (475)
Q Consensus       201 ~i~~l~~L~~L  211 (475)
                      .+.++++|+.|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            46667776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.6e-16  Score=139.66  Aligned_cols=163  Identities=20%  Similarity=0.358  Sum_probs=138.2

Q ss_pred             cCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcE
Q 011891           14 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE   93 (475)
Q Consensus        14 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~   93 (475)
                      ..+.+|++|+++++. ++.+   ++++.+++|++|++++| .+..++.++.+++|++|++++|.+..++. +.++++|+.
T Consensus        37 ~~l~~l~~L~l~~~~-i~~l---~~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLG-IKSI---DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSC-CCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             HHhcCCCEEECCCCC-CCCc---cccccCCCcCcCccccc-cccCcccccCCcccccccccccccccccc-ccccccccc
Confidence            467899999999964 4554   45788999999999996 67888889999999999999999988774 789999999


Q ss_pred             EeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCC
Q 011891           94 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT  173 (475)
Q Consensus        94 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~  173 (475)
                      |++++|.... ++ .+..+++|+.|++++|.+..++ .+..+++|+.|++.+|. +..++ .++++++|+.|++++|+++
T Consensus       111 L~l~~~~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         111 LTLFNNQITD-ID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc-cc-ccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCCCC
Confidence            9999876544 33 4788999999999999998775 58889999999999986 44554 4678999999999999999


Q ss_pred             CcchhhCCCCCCcee
Q 011891          174 ELPESLGLLSSLEEL  188 (475)
Q Consensus       174 ~lp~~l~~l~~L~~L  188 (475)
                      +++ .+..+++|+.|
T Consensus       186 ~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 DIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCG-GGGGCTTCSEE
T ss_pred             CCc-cccCCCCCCcC
Confidence            986 47888998876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=140.88  Aligned_cols=166  Identities=27%  Similarity=0.375  Sum_probs=141.5

Q ss_pred             CCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEE
Q 011891           15 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL   94 (475)
Q Consensus        15 ~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L   94 (475)
                      .+.+|+.|++++| .++.++   ++..+++|++|++++| .+..++.++.+++|++|++++|.++.++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~---~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ---GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCC-CCCCch---hHhhCCCCCEEeCCCc-cccCccccccCccccccccccccccccc-ccccccccccc
Confidence            5778999999986 455554   4788999999999996 6788888999999999999999999987 48889999999


Q ss_pred             eeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCC
Q 011891           95 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE  174 (475)
Q Consensus        95 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~  174 (475)
                      ++++|.. ..++ .+..++.|+.++++++.++..+ .+..+++|+.+++++|.. ..++ .+.++++|+.|++++|.+++
T Consensus       118 ~l~~~~~-~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l-~~i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         118 SLEHNGI-SDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI-SDIV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             ECTTSCC-CCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccc-cccc-cccccccccccccccccccccc-cccccccccccccccccc-cccc-cccCCCCCCEEECCCCCCCC
Confidence            9999764 4454 5788999999999999988754 467789999999999974 4554 36789999999999999999


Q ss_pred             cchhhCCCCCCceeEecc
Q 011891          175 LPESLGLLSSLEELYLER  192 (475)
Q Consensus       175 lp~~l~~l~~L~~L~L~~  192 (475)
                      ++ .+..+++|+.|+|++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            87 589999999999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=1.2e-14  Score=140.68  Aligned_cols=227  Identities=23%  Similarity=0.245  Sum_probs=155.3

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEee
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL   96 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L   96 (475)
                      .+|++|||+++ .++.+|+     ..++|++|+|++ +.++++|+.  +.+|+.|++.+|.++.++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~-~L~~lp~-----~~~~L~~L~Ls~-N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPE-----LPPHLESLVASC-NSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCS-----CCTTCSEEECCS-SCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCC-CCCCCCC-----CCCCCCEEECCC-CCCcccccc--hhhhhhhhhhhcccchhhhh---ccccccccc
Confidence            47999999996 5888885     246899999997 578899873  46899999999999877642   257999999


Q ss_pred             eCCCCCCccccccCCCCCCcEEEeeCcCCccCCcc-------------------cCCCCCcCEEEcCCCCCCCcc-----
Q 011891           97 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-------------------IECLSALCVLDLGDCKSLKSL-----  152 (475)
Q Consensus        97 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-------------------i~~l~~L~~L~L~~c~~l~~l-----  152 (475)
                      ++|. +..+|. ++.+++|++|+++++.+...+..                   +..++.++.+.+.++......     
T Consensus       106 ~~n~-l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQ-LEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSC-CSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccc-cccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            9974 778885 68899999999998877644432                   344566777877766532210     


Q ss_pred             -------------ccCCCCCCCCCEEEecCCCCCCcchhhC-----------------CCCCCceeEeccCCcc---ccc
Q 011891          153 -------------KLPFDGLYSLTYLYLTDCAITELPESLG-----------------LLSSLEELYLERNNFE---RIP  199 (475)
Q Consensus       153 -------------~~~~~~l~~L~~L~L~~~~l~~lp~~l~-----------------~l~~L~~L~L~~n~l~---~lp  199 (475)
                                   ......++.|+.+++++|....++....                 ....+...++..+.+.   .++
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                         0113557788999998887665443211                 1122333333332221   111


Q ss_pred             --------------hHHhhcCCcccccccccccccccCCCccCcceecccccccCccccCCCCCcceeEEEecCCc
Q 011891          200 --------------ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCVFFYLNENF  261 (475)
Q Consensus       200 --------------~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~l~~~~c~  261 (475)
                                    .....+++|++|++++| .++.+|..+++|+.|++++| .+++++...  .....+.+.+|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~L~~l~~~~--~~L~~L~L~~N~  335 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELP--QNLKQLHVEYNP  335 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCC--TTCCEEECCSSC
T ss_pred             chhcccccccCccccccccCCCCCEEECCCC-ccCccccccCCCCEEECCCC-cCCcccccc--CCCCEEECcCCc
Confidence                          11123578999999998 57889988899999999877 588776532  234566776664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-14  Score=131.05  Aligned_cols=217  Identities=23%  Similarity=0.321  Sum_probs=140.1

Q ss_pred             cEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccccCCcc-cCc-ccCCCCCCcEEe
Q 011891           20 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEE-LPS-SIGCLSRLLELN   95 (475)
Q Consensus        20 ~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~~~i~~-lp~-~i~~l~~L~~L~   95 (475)
                      +.++.++ ..++.+|.  .+  .+++++|+|+++ .++.+|.  +..+++|++|++++|.+.. ++. .+..+++++++.
T Consensus        11 ~~i~c~~-~~l~~iP~--~l--~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPS--DL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEES-CSCSSCCS--CS--CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeC-CCCCCcCC--CC--CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            5666665 45677774  22  146788888884 5677765  6678888888888887664 333 466788888888


Q ss_pred             eeCCCCCCccc-cccCCCCCCcEEEeeCcCCccCCc--ccCCCCCcCEEEcCCCCCCCccc-cCCCCC-CCCCEEEecCC
Q 011891           96 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLK-LPFDGL-YSLTYLYLTDC  170 (475)
Q Consensus        96 L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l~-~~~~~l-~~L~~L~L~~~  170 (475)
                      +..+..+..++ ..+..+++|++|+++++.+...+.  .+..+..+..+...++. +..++ ..+.++ ..++.|+++++
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSS
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeecccc
Confidence            87766665554 446778888888888888776543  22334444444444433 33333 233333 36778888888


Q ss_pred             CCCCcchhhCCCCCCcee-EeccCCccccch-HHhhcCCcccccccccccccccCC-CccCcceecccccccCcccc
Q 011891          171 AITELPESLGLLSSLEEL-YLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       171 ~l~~lp~~l~~l~~L~~L-~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~-l~~~L~~L~i~~c~~L~~l~  244 (475)
                      +++.++......++++.+ .+.+|+++.+|. .+.++++|++|++++|+ ++.+|. .+.++..|...++.+|+.+|
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCC
Confidence            888877666666666555 456677888874 46778888888888874 666664 34555555555555565554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=133.11  Aligned_cols=212  Identities=15%  Similarity=0.175  Sum_probs=153.6

Q ss_pred             CCCcccccccccCCCCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCCCcC--cCCCCCCcEEEccc-cCCc
Q 011891            3 HSNIEQLSESVQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIE   79 (475)
Q Consensus         3 ~s~l~~L~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~~p~--i~~l~~L~~L~L~~-~~i~   79 (475)
                      +++++++|+++-  +++++|+|+++ .++.+|. ..+.++++|++|++++|.....++.  +..+++++++.+.. +.+.
T Consensus        17 ~~~l~~iP~~l~--~~l~~L~Ls~n-~i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          17 ESKVTEIPSDLP--RNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCSCSSCCSCSC--SCCSEEEEESC-CCCEECT-TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCCCcCCCCC--CCCCEEECcCC-cCCccCh-hHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            457888887663  68999999996 5777775 3578899999999999877666655  66899999998865 5676


Q ss_pred             ccC-cccCCCCCCcEEeeeCCCCCCcccc--ccCCCCCCcEEEeeCcCCccCCc-ccCCC-CCcCEEEcCCCCCCCcccc
Q 011891           80 ELP-SSIGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEELPS-PIECL-SALCVLDLGDCKSLKSLKL  154 (475)
Q Consensus        80 ~lp-~~i~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~lp~-~i~~l-~~L~~L~L~~c~~l~~l~~  154 (475)
                      .++ ..+..+++|++|+++++. +...+.  .+..+..+..+...++.+..++. .+..+ ..++.|++.++. +..++.
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~  170 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHN  170 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECT
T ss_pred             ccccccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccccc-cccccc
Confidence            554 467899999999999975 444443  23334555555566677776654 34444 478889998876 445555


Q ss_pred             CCCCCCCCCEE-EecCCCCCCcchh-hCCCCCCceeEeccCCccccch-HHhhcCCcccccccccccccccC
Q 011891          155 PFDGLYSLTYL-YLTDCAITELPES-LGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLP  223 (475)
Q Consensus       155 ~~~~l~~L~~L-~L~~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp  223 (475)
                      ......+++.+ .+++|+++++|.. +..+++|+.|+|++|+++.+|. .+.++++|+.|++.+   ++.+|
T Consensus       171 ~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~---l~~lp  239 (242)
T d1xwdc1         171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP  239 (242)
T ss_dssp             TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES---SSCSC
T ss_pred             ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC---CCcCC
Confidence            44455565555 5677889998764 6889999999999999999875 466677777776654   44554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-15  Score=140.34  Aligned_cols=204  Identities=19%  Similarity=0.250  Sum_probs=120.3

Q ss_pred             CCCCCcEEEEeCCCCCCC-CcC-cCCCCCCcEEEccccCCc-ccCcccCCCCCCcEEeeeCCCCCCc--cccccCCCCCC
Q 011891           41 HLNKLVILNLSGCSKLKS-LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKT--LPSSLCKLKSL  115 (475)
Q Consensus        41 ~l~~L~~L~L~~c~~l~~-~p~-i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L  115 (475)
                      ...+|++|++++|..... ++. +..+++|++|+++++.+. ..+..+..+++|++|++++|..++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777643222 233 456777777777777765 3445566777788888877776653  22223456778


Q ss_pred             cEEEeeCc-CCc--cCCcccC-CCCCcCEEEcCCCCC-CCc--cccCCCCCCCCCEEEecCCC-CCC-cchhhCCCCCCc
Q 011891          116 EEICLTGS-AIE--ELPSPIE-CLSALCVLDLGDCKS-LKS--LKLPFDGLYSLTYLYLTDCA-ITE-LPESLGLLSSLE  186 (475)
Q Consensus       116 ~~L~l~~~-~i~--~lp~~i~-~l~~L~~L~L~~c~~-l~~--l~~~~~~l~~L~~L~L~~~~-l~~-lp~~l~~l~~L~  186 (475)
                      ++|++++| .++  .+...+. ..++|+.|++++|.. +..  +.....++++|+.|++++|. +++ .+..+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            88888775 333  1222222 235778888877632 221  11122456778888888764 554 455667778888


Q ss_pred             eeEeccC-Ccc-ccchHHhhcCCcccccccccccccccCCCccCcceecccccccCccccC
Q 011891          187 ELYLERN-NFE-RIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSG  245 (475)
Q Consensus       187 ~L~L~~n-~l~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~l~~~L~~L~i~~c~~L~~l~~  245 (475)
                      +|++++| .++ .-...++++++|+.|++++|-.-..++.+...+..|.+ +|..+..+..
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i-~~~~ls~~~~  263 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTIAR  263 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE-SCCCSCCTTC
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccccc-cCccCCCCCC
Confidence            8888886 343 22345667788888888877433333333333444444 4555655543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-15  Score=140.69  Aligned_cols=173  Identities=21%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             CCCCCcEEEccccCCc--ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCc-CCcc--CCcccCCCCCc
Q 011891           64 SAGNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEE--LPSPIECLSAL  138 (475)
Q Consensus        64 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~--lp~~i~~l~~L  138 (475)
                      ...+|++|+++++.+.  .+...+.++++|++|++++|......+..++.+++|++|+++++ .++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4456666666666554  23444556666666666666443344455566666666666663 3431  22223345666


Q ss_pred             CEEEcCCCCCCCccc--cCC-CCCCCCCEEEecCC--CCCC--cchhhCCCCCCceeEeccCC-cc-ccchHHhhcCCcc
Q 011891          139 CVLDLGDCKSLKSLK--LPF-DGLYSLTYLYLTDC--AITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLS  209 (475)
Q Consensus       139 ~~L~L~~c~~l~~l~--~~~-~~l~~L~~L~L~~~--~l~~--lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~  209 (475)
                      ++|++++|..+....  ... ...++|+.|++++|  .+++  +......+++|++|++++|. ++ .....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            666666665443211  111 22355666666655  2333  33334456666666666653 33 2334555666666


Q ss_pred             cccccccccccc-----cCCCccCcceeccccc
Q 011891          210 SLLVSYCERLQS-----LPKLPCNLYWLDAQHC  237 (475)
Q Consensus       210 ~L~l~~c~~l~~-----lp~l~~~L~~L~i~~c  237 (475)
                      +|++++|..++.     +.. .++|+.|++.+|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhc-CCCCCEEeeeCC
Confidence            666666654431     211 235666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=4.5e-13  Score=119.01  Aligned_cols=109  Identities=26%  Similarity=0.312  Sum_probs=55.2

Q ss_pred             CCCcEEEccccCCcc-cC-cccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEc
Q 011891           66 GNIEKILLDGTAIEE-LP-SSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL  143 (475)
Q Consensus        66 ~~L~~L~L~~~~i~~-lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L  143 (475)
                      +++++|+|++|.|+. ++ ..+..+++|++|+|++|......+..+..+++|++|++++|.++.+|+             
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-------------   95 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-------------   95 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-------------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH-------------
Confidence            345555555555542 21 223444444444444444333333344444444444444444444332             


Q ss_pred             CCCCCCCccccCCCCCCCCCEEEecCCCCCCcc-hhhCCCCCCceeEeccCCccc
Q 011891          144 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFER  197 (475)
Q Consensus       144 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~  197 (475)
                                ..+.++++|+.|+|++|+|+.+| ..+..+++|++|+|++|.+..
T Consensus        96 ----------~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          96 ----------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ----------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ----------HHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence                      23455666666666666666643 335566677777777776653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=117.21  Aligned_cols=128  Identities=21%  Similarity=0.246  Sum_probs=70.4

Q ss_pred             cCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEE
Q 011891           62 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL  141 (475)
Q Consensus        62 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L  141 (475)
                      +.++.+|++|+|++|+|+.++.....+++|++|++++| .+..++ .+..+++|++|++++|.++.++..          
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~----------   81 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEG----------   81 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSC----------
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCcc----------
Confidence            33444555555555555555544444555555555553 233332 244444444444444444443322          


Q ss_pred             EcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch--hhCCCCCCceeEeccCCccccch----HHhhcCCccccccc
Q 011891          142 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVS  214 (475)
Q Consensus       142 ~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~l~  214 (475)
                                   .+..+++|+.|++++|++++++.  .+..+++|++|++++|.++..|.    .+..+++|+.||-.
T Consensus        82 -------------~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          82 -------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             -------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             -------------ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence                         12345666677777776666543  45667777777777777766653    45667777776643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=1.4e-12  Score=115.84  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=91.6

Q ss_pred             EEeeeCCCCCCccccccCCCCCCcEEEeeCcCCcc-C-CcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCC
Q 011891           93 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-L-PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC  170 (475)
Q Consensus        93 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-l-p~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~  170 (475)
                      +++.++ ..++.+|..+.  +++++|++++|.|+. + +..+..+++|++|++++|......+..+..+++|+.|+|++|
T Consensus        12 ~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeC-CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            344443 33445555442  456677777777753 3 234566777777777777766656667788899999999999


Q ss_pred             CCCCcch-hhCCCCCCceeEeccCCccccc-hHHhhcCCccccccccccc
Q 011891          171 AITELPE-SLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCER  218 (475)
Q Consensus       171 ~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~l~~c~~  218 (475)
                      +++.+|. .+..+++|++|+|++|+|+.+| ..+..+++|++|+|++++.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            9999754 5789999999999999999887 4578899999999998853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.8e-13  Score=115.45  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             ccCCCCCcEEEEeCCCCCCCCcCc-CCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccc-cCCCCCCc
Q 011891           39 IQHLNKLVILNLSGCSKLKSLPEI-SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLE  116 (475)
Q Consensus        39 ~~~l~~L~~L~L~~c~~l~~~p~i-~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~  116 (475)
                      +.++.+|++|+|++| .+..++.+ ..+++|+.|+|++|.|++++ .+..+++|++|++++|. +..+|.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            567788999999995 68888874 67999999999999999985 48899999999999976 6666654 45799999


Q ss_pred             EEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEecCCCCCCcch----hhCCCCCCceeE
Q 011891          117 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELY  189 (475)
Q Consensus       117 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~----~l~~l~~L~~L~  189 (475)
                      +|++++|.++.++..                      ..+..+++|+.|++++|.+++.|.    .+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l----------------------~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDL----------------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGG----------------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccc----------------------cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999988766431                      012345556666666666655442    356667777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.3e-12  Score=105.78  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             cEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCC
Q 011891           69 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKS  148 (475)
Q Consensus        69 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~  148 (475)
                      |+|+|++|+++.++. +..+++|++|++++| .++.+|+.++.+++|++|++++|.++.+|                   
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-------------------   59 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-------------------   59 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-------------------
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-------------------
Confidence            355666666655542 455555555555553 33445544555555555555555544432                   


Q ss_pred             CCccccCCCCCCCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCccccc----hHHhhcCCcccc
Q 011891          149 LKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIP----ESIIRLSKLSSL  211 (475)
Q Consensus       149 l~~l~~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp----~~i~~l~~L~~L  211 (475)
                            .+..+++|+.|++++|++++++  ..+..+++|+.|++++|+++.++    ..+..+|+|+.|
T Consensus        60 ------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          60 ------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ------ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                  2344555666666666666544  34566677777777777665332    223345555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.2e-12  Score=105.97  Aligned_cols=99  Identities=20%  Similarity=0.327  Sum_probs=82.7

Q ss_pred             cEEEEeCCCCCCCCcCcCCCCCCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCC
Q 011891           46 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAI  125 (475)
Q Consensus        46 ~~L~L~~c~~l~~~p~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  125 (475)
                      |+|+|++ +.+..++.++.+++|++|++++|.++++|..++.+++|++|++++| .++.+| .+..+++|++|++++|.+
T Consensus         1 R~L~Ls~-n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTT-SCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCC-CCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            5799999 5778898899999999999999999999999999999999999996 567776 489999999999999999


Q ss_pred             ccCCc--ccCCCCCcCEEEcCCCC
Q 011891          126 EELPS--PIECLSALCVLDLGDCK  147 (475)
Q Consensus       126 ~~lp~--~i~~l~~L~~L~L~~c~  147 (475)
                      +.++.  .+..+++|+.|++++|+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCc
Confidence            87763  34555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1e-13  Score=123.87  Aligned_cols=113  Identities=22%  Similarity=0.322  Sum_probs=52.9

Q ss_pred             ccCcccCCCCCCcEEeeeCCCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCC
Q 011891           80 ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGL  159 (475)
Q Consensus        80 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l  159 (475)
                      .++.++..+++|++|+|++|. ++.++ .+..+++|++|++++|.++.+|.....+.+|+.|++++|. +..++ .+..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l  114 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHH
T ss_pred             hhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc-ccccc
Confidence            334444444555555554432 33333 2444555555555555554444333333344444444443 22222 12344


Q ss_pred             CCCCEEEecCCCCCCcc--hhhCCCCCCceeEeccCCcc
Q 011891          160 YSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       160 ~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~L~~n~l~  196 (475)
                      ++|+.|++++|++++++  ..+..+++|+.|++++|++.
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            55555555555555543  23555556666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=2.3e-13  Score=121.62  Aligned_cols=153  Identities=19%  Similarity=0.273  Sum_probs=115.9

Q ss_pred             CCcEEeeeC-CCCCCccccccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCccccCCCCCCCCCEEEec
Q 011891           90 RLLELNLGD-CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT  168 (475)
Q Consensus        90 ~L~~L~L~~-c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~~~~~l~~L~~L~L~  168 (475)
                      .++.+++.+ ...+..+|..+..+++|++|++++|.|+.++ .+..+++|+.|++++|. +..++.....+++|+.|+++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECS
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccc
Confidence            344555554 2356778888999999999999999999986 58889999999999986 55566444456789999999


Q ss_pred             CCCCCCcchhhCCCCCCceeEeccCCccccc--hHHhhcCCcccccccccccccccCCCc--cCcceecccccccCcccc
Q 011891          169 DCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPKLP--CNLYWLDAQHCTTLESLS  244 (475)
Q Consensus       169 ~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~l~~c~~l~~lp~l~--~~L~~L~i~~c~~L~~l~  244 (475)
                      +|.+++++ .+..+++|+.|++++|+++.++  ..+..+++|+.|++++|+.....+...  +..+...+..+++|+.++
T Consensus       102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999975 4778899999999999998876  468899999999999986443333221  112223355667777665


Q ss_pred             C
Q 011891          245 G  245 (475)
Q Consensus       245 ~  245 (475)
                      .
T Consensus       181 ~  181 (198)
T d1m9la_         181 G  181 (198)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=2.5e-11  Score=117.50  Aligned_cols=229  Identities=16%  Similarity=0.146  Sum_probs=152.3

Q ss_pred             ccccccccCCCCCcEEeccCCCCccCCC---ChhhccCCCCCcEEEEeCCCCCCC---Cc-------C-cCCCCCCcEEE
Q 011891            7 EQLSESVQHHGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKS---LP-------E-ISSAGNIEKIL   72 (475)
Q Consensus         7 ~~L~~~~~~l~~L~~L~Ls~~~~l~~~p---~~~~~~~l~~L~~L~L~~c~~l~~---~p-------~-i~~l~~L~~L~   72 (475)
                      +.+-..++....|+.|+|++|. +....   ....+...++|+.|++++|..-..   .+       . +...++|++|+
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3445567778999999999864 22110   012356778999999998642211   11       1 34678999999


Q ss_pred             ccccCCcc-----cCcccCCCCCCcEEeeeCCCCCCc----ccc---------ccCCCCCCcEEEeeCcCCc-----cCC
Q 011891           73 LDGTAIEE-----LPSSIGCLSRLLELNLGDCKNLKT----LPS---------SLCKLKSLEEICLTGSAIE-----ELP  129 (475)
Q Consensus        73 L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----lp~---------~l~~l~~L~~L~l~~~~i~-----~lp  129 (475)
                      |++|.+..     +...+...++|++|++++|.....    +..         .....+.|+.|.++++.+.     .+.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            99998763     444556788999999998753211    100         1134678899999988776     233


Q ss_pred             cccCCCCCcCEEEcCCCCCCCc-----cccCCCCCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCccc--
Q 011891          130 SPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFER--  197 (475)
Q Consensus       130 ~~i~~l~~L~~L~L~~c~~l~~-----l~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~--  197 (475)
                      ..+.....|+.|++++|..-..     +...+..+++|+.|+|++|.+++     +...+...++|++|+|++|.++.  
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            4456678899999999874321     22334677889999999998865     45667788999999999998853  


Q ss_pred             ---cchHHhh--cCCcccccccccccccc-----cCC----CccCcceeccccc
Q 011891          198 ---IPESIIR--LSKLSSLLVSYCERLQS-----LPK----LPCNLYWLDAQHC  237 (475)
Q Consensus       198 ---lp~~i~~--l~~L~~L~l~~c~~l~~-----lp~----l~~~L~~L~i~~c  237 (475)
                         +-..+..  .+.|+.|++++|. ++.     +..    -.+.|+.|+++++
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence               3333443  3679999999985 221     111    1346777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=2e-11  Score=118.12  Aligned_cols=201  Identities=19%  Similarity=0.194  Sum_probs=118.5

Q ss_pred             hhccCCCCCcEEEEeCCCCCCC-----CcC-cCCCCCCcEEEccccCCcc-----------cCcccCCCCCCcEEeeeCC
Q 011891           37 SLIQHLNKLVILNLSGCSKLKS-----LPE-ISSAGNIEKILLDGTAIEE-----------LPSSIGCLSRLLELNLGDC   99 (475)
Q Consensus        37 ~~~~~l~~L~~L~L~~c~~l~~-----~p~-i~~l~~L~~L~L~~~~i~~-----------lp~~i~~l~~L~~L~L~~c   99 (475)
                      ..+.+...|+.|+|++|. +..     +.. +...++|+.|+++++....           +...+..+++|+.|+|++|
T Consensus        25 ~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            345667778888888753 322     111 4566788888887654331           2233456677888888876


Q ss_pred             CCCC----ccccccCCCCCCcEEEeeCcCCcc-----CCc---------ccCCCCCcCEEEcCCCCCCCc----cccCCC
Q 011891          100 KNLK----TLPSSLCKLKSLEEICLTGSAIEE-----LPS---------PIECLSALCVLDLGDCKSLKS----LKLPFD  157 (475)
Q Consensus       100 ~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~---------~i~~l~~L~~L~L~~c~~l~~----l~~~~~  157 (475)
                      ....    .+...+...++|++|++++|.+..     +..         .......|+.++++++.....    +...+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            5322    234445566778888888776541     000         112456777787777653211    111223


Q ss_pred             CCCCCCEEEecCCCCCC------cchhhCCCCCCceeEeccCCcc-----ccchHHhhcCCcccccccccccc-------
Q 011891          158 GLYSLTYLYLTDCAITE------LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERL-------  219 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~~c~~l-------  219 (475)
                      ..+.|+.|++++|.+++      +...+...++|+.|++++|.++     .+...+..+++|++|++++|..-       
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            45678888888887764      2234556777888888888764     24455667778888888877521       


Q ss_pred             -cccCCC-ccCcceecccccc
Q 011891          220 -QSLPKL-PCNLYWLDAQHCT  238 (475)
Q Consensus       220 -~~lp~l-~~~L~~L~i~~c~  238 (475)
                       ..+... ...|+.|+++++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHhhhccCCCCCEEECCCCc
Confidence             011111 2467777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.7e-10  Score=94.59  Aligned_cols=99  Identities=19%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             EEeeCcCCccCCcccCCCCCcCEEEcCCCCCCCcccc-CCCCCCCCCEEEecCCCCCCc-chhhCCCCCCceeEeccCCc
Q 011891          118 ICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNF  195 (475)
Q Consensus       118 L~l~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~l~~-~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~n~l  195 (475)
                      ++.+++.+.+.|..+..+++|++|++.+++.++.++. .+.++++|+.|+|++|+|+.+ +.++..+++|+.|+|++|++
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            3444444444444444444444444444433333332 234444444444444444443 23344444555555555554


Q ss_pred             cccchHHhhcCCccccccccc
Q 011891          196 ERIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       196 ~~lp~~i~~l~~L~~L~l~~c  216 (475)
                      +++|..+....+|+.|+|++|
T Consensus        93 ~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECCSS
T ss_pred             cccChhhhccccccccccCCC
Confidence            444433333334444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-09  Score=92.39  Aligned_cols=107  Identities=20%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCcEEEccccCCcccCcccCCCCCCcEEeeeCCCCCCcccc-ccCCCCCCcEEEeeCcCCccCCcccCCCCCcCEEEcCC
Q 011891           67 NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGD  145 (475)
Q Consensus        67 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~  145 (475)
                      ..+.++..++.+.++|..+..+++|++|++.+++.++.++. .+.++++|+.|++++|.++.+++               
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~---------------   73 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP---------------   73 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT---------------
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc---------------
Confidence            34445555666666666666666666666666555555543 35566666666666666555532               


Q ss_pred             CCCCCccccCCCCCCCCCEEEecCCCCCCcchhhCCCCCCceeEeccCCcc
Q 011891          146 CKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE  196 (475)
Q Consensus       146 c~~l~~l~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~n~l~  196 (475)
                              ..+.++++|+.|+|++|+++.+|.......+|+.|+|++|.+.
T Consensus        74 --------~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          74 --------DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             --------TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             --------ccccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence                    2334556666666667777776665554556778888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.1e-10  Score=114.15  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=60.8

Q ss_pred             ccCCCCCcEEeccCCCCccCCC---ChhhccCCCCCcEEEEeCCCCCCC-----CcC-cC-CCCCCcEEEccccCCcc--
Q 011891           13 VQHHGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKS-----LPE-IS-SAGNIEKILLDGTAIEE--   80 (475)
Q Consensus        13 ~~~l~~L~~L~Ls~~~~l~~~p---~~~~~~~l~~L~~L~L~~c~~l~~-----~p~-i~-~l~~L~~L~L~~~~i~~--   80 (475)
                      +..++++++|+|++|. ++...   -...+..+++|++|+|++|. ++.     +.. +. ...+|++|+|++|.++.  
T Consensus        23 ~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            4567899999999985 33211   01235788999999999863 432     111 22 34589999999998873  


Q ss_pred             ---cCcccCCCCCCcEEeeeCCC
Q 011891           81 ---LPSSIGCLSRLLELNLGDCK  100 (475)
Q Consensus        81 ---lp~~i~~l~~L~~L~L~~c~  100 (475)
                         ++..+..+++|++|++++|.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccchhhcccccccccccccc
Confidence               45567789999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=7.9e-08  Score=94.90  Aligned_cols=108  Identities=15%  Similarity=0.306  Sum_probs=78.7

Q ss_pred             CCCcEEeccCCCCccCCCChhhccCCCCCcEEEEeCCCCCCC-----CcC-cCCCCCCcEEEccccCCcc-----cCccc
Q 011891           17 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS-----LPE-ISSAGNIEKILLDGTAIEE-----LPSSI   85 (475)
Q Consensus        17 ~~L~~L~Ls~~~~l~~~p~~~~~~~l~~L~~L~L~~c~~l~~-----~p~-i~~l~~L~~L~L~~~~i~~-----lp~~i   85 (475)
                      .+|+.||+++ ..++.......+..+++|++|+|++|. +..     ++. +..+++|++|+|++|.|+.     +...+
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            4789999986 555554334456778999999999984 442     223 4688999999999998862     23333


Q ss_pred             C-CCCCCcEEeeeCCCCCC----ccccccCCCCCCcEEEeeCcCCc
Q 011891           86 G-CLSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSAIE  126 (475)
Q Consensus        86 ~-~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~  126 (475)
                      . ...+|++|++++|....    .++..+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2 23589999999986332    24566788999999999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=8.1e-07  Score=75.37  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=8.4

Q ss_pred             CCCCCcEEEeeCcCCccC
Q 011891          111 KLKSLEEICLTGSAIEEL  128 (475)
Q Consensus       111 ~l~~L~~L~l~~~~i~~l  128 (475)
                      .+++|+.|++++|.|+.+
T Consensus        89 ~l~~L~~L~Ls~N~i~~l  106 (162)
T d1koha1          89 KAPNLKILNLSGNELKSE  106 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCG
T ss_pred             hCCcccccccccCccccc
Confidence            344444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=6.7e-05  Score=63.36  Aligned_cols=37  Identities=22%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             CCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCc
Q 011891          159 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF  195 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l  195 (475)
                      .+.|+.|+|++|.+++     +-..+...++|++|++++|.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            3456666666666654     333455556666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.7e-05  Score=63.48  Aligned_cols=60  Identities=22%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             CCCCCCEEEecCCCCCCc---chhhCCCCCCceeEeccCCccccch-HHhhcCCcccccccccc
Q 011891          158 GLYSLTYLYLTDCAITEL---PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE  217 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~l~~c~  217 (475)
                      .++.|+.|+|++|+++.+   +..+..+++|+.|++++|.+++++. ......+|+.|++++|+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            355566666666666553   2334456666666666666665553 11223456666666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.09  E-value=0.00012  Score=61.84  Aligned_cols=86  Identities=19%  Similarity=0.104  Sum_probs=44.8

Q ss_pred             cCCCCCCcEEEeeCcCCc-----cCCcccCCCCCcCEEEcCCCCCCCc----cccCCCCCCCCCEEEecCCCCCC-----
Q 011891          109 LCKLKSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----  174 (475)
Q Consensus       109 l~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l~~----l~~~~~~l~~L~~L~L~~~~l~~-----  174 (475)
                      +...+.|++|++++|.+.     .+...+...+.|++|++++|.....    +-..+...++|+.|+++++.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            444455555555555544     1112233445566666666642211    11223456778888888775443     


Q ss_pred             ---cchhhCCCCCCceeEeccCC
Q 011891          175 ---LPESLGLLSSLEELYLERNN  194 (475)
Q Consensus       175 ---lp~~l~~l~~L~~L~L~~n~  194 (475)
                         +...+..-++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               23334445666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.52  E-value=0.00034  Score=58.62  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CCCCCEEEecCCCCCC-----cchhhCCCCCCceeEec--cCCcc-----ccchHHhhcCCccccccccc
Q 011891          159 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLE--RNNFE-----RIPESIIRLSKLSSLLVSYC  216 (475)
Q Consensus       159 l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~--~n~l~-----~lp~~i~~l~~L~~L~l~~c  216 (475)
                      .++++.+++++|.+++     +...+...++|+.++|.  +|.+.     .+...+...++|+.|+++.+
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3445556666555543     33445555666654443  34442     24445556677777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.52  E-value=0.00046  Score=57.79  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             CCCCCCEEEecCCCCCC-----cchhhCCCCCCceeEeccCCcc-----ccchHHhhcCCccccccc
Q 011891          158 GLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVS  214 (475)
Q Consensus       158 ~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~l~  214 (475)
                      ..+.|+.|++++|.+++     +...+...++|+.+++++|.+.     .+...+...++|+.++|+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            34455555555555543     2233444556666666666552     233344455555554443