Citrus Sinensis ID: 011919
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVS3 | 477 | Pentatricopeptide repeat- | yes | no | 0.983 | 0.979 | 0.536 | 1e-140 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.867 | 0.645 | 0.276 | 6e-40 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.597 | 0.440 | 0.312 | 1e-38 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.903 | 0.673 | 0.271 | 1e-38 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.711 | 0.448 | 0.301 | 2e-38 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.589 | 0.377 | 0.295 | 2e-38 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.732 | 0.465 | 0.271 | 5e-37 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.597 | 0.457 | 0.322 | 6e-37 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.797 | 0.724 | 0.266 | 1e-36 | |
| Q0WKZ3 | 523 | Pentatricopeptide repeat- | no | no | 0.646 | 0.586 | 0.303 | 1e-36 |
| >sp|Q9LVS3|PP422_ARATH Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/473 (53%), Positives = 339/473 (71%), Gaps = 6/473 (1%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
GC PNRVT LI+G +E + D +LIDK+V G VS C+SS V L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 211/431 (48%), Gaps = 19/431 (4%)
Query: 29 ASPAERFYTHLQKNPNNIEK-TLATVKAKLD--STCVIEVLHRCFPSQSQMGIRFFIWAA 85
A E+ Y L+ + + + K LA ++ +D +I VL RC +G RFF+WA
Sbjct: 64 AGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRC-GDAGNLGYRFFLWAT 122
Query: 86 LQSSYRHSSFMYNRACE-----MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
Q Y HS C+ +S+++Q ++ + E K ++ ++ V+
Sbjct: 123 KQPGYFHSY----EVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFA 178
Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
A + +A+ VL +MP++ L PD ++ ++ C+ G + A ++ + M P++
Sbjct: 179 SANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLR 237
Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
+ S++ G+C G+L +A + MK G ++V ++ LL G G M A +L+ +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297
Query: 261 EKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
K G + PNV YT +IQ C + M EA+ + ME GC + VT + LI GFC
Sbjct: 298 RKRGFE--PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKW 355
Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
G +D+ Y ++D + G + S Y ++V + ++ +E +L KM G PD L
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
+V+IR C G+V E L+ ++E G VD+ + +++ G + +EA + M
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFV--IMINGFTSQGFLIEACNHFKEM 473
Query: 440 LKKRIWLQGPY 450
+ + I+ Y
Sbjct: 474 VSRGIFSAPQY 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 164/288 (56%), Gaps = 4/288 (1%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
AM +LRKM E +++ D + Y+ +I C+ G + A L M + DIITY ++I
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
GFCNAGR +D L + M + + N+V +S L+D + G + A +LL EM + G
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG--I 364
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
+PN +TY S+I FC + ++EA+ ++D M + GC P+ +T + LI G+C +D+ +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L ++ G +++ Y++LV ++ +L+ A+KLF +M++ V+PD ++ +++ LC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
G++ + ++ IEK +D I+ +++ G+C + +A L
Sbjct: 485 DNGELEKALEIFGKIEKSKM--ELDIGIYMIIIHGMCNASKVDDAWDL 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/445 (27%), Positives = 218/445 (48%), Gaps = 16/445 (3%)
Query: 11 SSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLH 67
S + KNSK + AS E+ Y L+K + + K L +L + VL+
Sbjct: 66 SHNDRTKNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLN 121
Query: 68 RCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCV 126
RC +G RFF+WAA Q Y HS +Y + +S+++Q ++ + E KE +
Sbjct: 122 RC-GDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 180
Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
+ ++ V+ A + +A+ VL +MP+F PD ++ ++ C+ G + A +L
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240
Query: 187 MKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
+ M + +P ++ + S++ G+C G++ +A + M G ++V Y+ LL G
Sbjct: 241 FEDMRM--RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYA 298
Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
G M A +LL +M + G + PN YT +IQ C M+EA+ + ME C +
Sbjct: 299 NAGKMADAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 356
Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
VT + L+ GFC G +D+ Y ++D ++ G + S Y ++V + + +E +L
Sbjct: 357 VVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELME 416
Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
KM PD +V+IR C G+V E L+ ++E+ G VD+ + +++ GL
Sbjct: 417 KMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLAS 474
Query: 426 KNHSVEAAKLARFMLKKRIWLQGPY 450
+ +EA+ + M+ + ++ Y
Sbjct: 475 QGCLLEASDHFKEMVTRGLFSVSQY 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 176/348 (50%), Gaps = 10/348 (2%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRK 154
+ N C+ +K I++++ +EG V VI LC+ + EA+ VL +
Sbjct: 301 LVNGLCKAGHVKH----AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV-KEAVEVLDQ 355
Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
M D P+T+ YN +I C++ + A EL + + + PD+ T+ S+I+G C
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
A LF+ M+ GC + Y+ L+D +C G ++ AL +L +ME G C+ +V+TY
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITY 473
Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
++I FC +EA I D ME G + N VT +TLI G C +++A QL+D+++
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533
Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
G Y+SL+ R +K+A + M ++G +PD + +I LC G+V
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593
Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
L I+ G ++ ++ ++ GL RK + EA L R ML++
Sbjct: 594 ASKLLRSIQMKGI--NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 158/315 (50%), Gaps = 35/315 (11%)
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
+M D+ PD + Y +I FC+ GDM+ A +L M L PD +T+ +I G+C AG
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----------- 262
++DA + M + GC+ N+V Y+ L+DG+C+ G ++ A ELL EM K
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 263 ----------------------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
E + + VTYT+++ +C G M +A IL M
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
G P VT + L+ GFC+ G L++ +L++ ++A G + ++SLV + LK A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
++ M + GV PDG +++ C + E + L+++++ GF SV + +SVL+
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST--YSVLI 673
Query: 421 LGLCRKNHSVEAAKL 435
G ++ +EA ++
Sbjct: 674 KGFLKRKKFLEAREV 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 35/383 (9%)
Query: 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
L+S + F YN N + + + + + +GC+ +V + + K R
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
++ +LR M L P+ I YN VI C +G M ++ M D +TY ++
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316
Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
IKG+C G A + M RHG +++ Y++L+ +C+ G+M RA+E L +M G
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
SP+VVTY ++I C G M++A+
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
+L+ M+ G +P+ V+ ST++ GFC ++DEA ++ ++V G YSSL+
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
+R KEA L+ +ML G+ PD + +I C+ G + + L+ ++ + G L V
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
+ +SVL+ GL +++ + EA +L
Sbjct: 557 T--YSVLINGLNKQSRTREAKRL 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 158/288 (54%), Gaps = 4/288 (1%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
AM +LRKM E ++ D + Y+ +I C+ G + A L M + DII Y ++I+
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
GFC AGR +D L + M + ++VA+SAL+D + G + A EL EM + G
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG--I 348
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
SP+ VTYTS+I FC + + +A +LD M + GC PN T + LI G+C +D+ +
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L K+ G V+ Y++L+ +L+ A++LF +M++ V+PD ++ +++ LC
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
G+ + ++E IEK +D I+++++ G+C + +A L
Sbjct: 469 DNGEPEKALEIFEKIEKSKM--ELDIGIYNIIIHGMCNASKVDDAWDL 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 197/406 (48%), Gaps = 27/406 (6%)
Query: 40 QKNP-NNIEKTLATVKAKLDSTCVIEVLHRC----FPSQSQMGIRFFIWAALQSSYRHSS 94
+NP +++E TL ++ S V +VL RC FP+ RFF+WA + HS
Sbjct: 48 HRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAH-----RFFLWARRIPDFAHSL 102
Query: 95 FMYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
Y+ E+ + +++ D ++EA + +S K+ ++F +A L +EA
Sbjct: 103 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 162
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM---KGMGLIDLYPDIITYVSMIKGFC 210
+M EF ++P + ++ C+K + A E KG G++ P TY +++G+
Sbjct: 163 RMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV---PSAKTYSILVRGW- 218
Query: 211 NAGRLEDACG---LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
R+ DA G +F M C +L+AY+ALLD +C+ G ++ ++ EM G
Sbjct: 219 --ARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLG--L 274
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
P+ ++ I +C G + A +LDRM+ PN T + +IK C +D+AY
Sbjct: 275 KPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYL 334
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L+D+++ G+ Y+S++ + A KL S+M + PD +++++ L
Sbjct: 335 LLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
G+ ++E + + F +V + ++V++ GL RK +E A
Sbjct: 395 RIGRFDRATEIWEGMSERKFYPTVAT--YTVMIHGLVRKKGKLEEA 438
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 9/316 (2%)
Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
V + ++ C+ R EA+ ++ M F P+ +IYN VI C+ D+ A E+
Sbjct: 150 VTLGSLLNGFCQGNRF-QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 208
Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
M + D +TY ++I G N+GR DA L + M + N++ ++AL+D + G
Sbjct: 209 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 268
Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
++ A L EM + PNV TY S+I FC G + +A + D M + GC P+ VT
Sbjct: 269 NLLEARNLYKEMIRRS--VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT 326
Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
+TLI GFC +++ +L ++ G V Y++L+ + +L A+K+F++M+
Sbjct: 327 YNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 386
Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
GV PD + ++++ LC G++ + + ED++K S +D DI +++++ GLCR
Sbjct: 387 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK----SEMDVDIITYNIIIQGLCRT 442
Query: 427 NHSVEAAKLARFMLKK 442
+ EA L R + +K
Sbjct: 443 DKLKEAWCLFRSLTRK 458
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 359474405 | 638 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.722 | 0.644 | 1e-175 | |
| 296084709 | 528 | unnamed protein product [Vitis vinifera] | 0.970 | 0.873 | 0.644 | 1e-175 | |
| 255581311 | 518 | pentatricopeptide repeat-containing prot | 0.987 | 0.905 | 0.617 | 1e-173 | |
| 224137884 | 476 | predicted protein [Populus trichocarpa] | 0.989 | 0.987 | 0.581 | 1e-159 | |
| 449442465 | 475 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.995 | 0.568 | 1e-153 | |
| 297790927 | 477 | pentatricopeptide repeat-containing prot | 0.976 | 0.972 | 0.544 | 1e-140 | |
| 357469235 | 449 | Pentatricopeptide repeat-containing prot | 0.915 | 0.968 | 0.544 | 1e-138 | |
| 15238076 | 477 | pentatricopeptide repeat-containing prot | 0.983 | 0.979 | 0.536 | 1e-138 | |
| 147792816 | 577 | hypothetical protein VITISV_001082 [Viti | 0.749 | 0.616 | 0.629 | 1e-131 | |
| 356523566 | 475 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.957 | 0.512 | 1e-130 |
| >gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA S AE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 5 SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 60 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV K L+EAEKL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 359
Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
F +MLA+ VKPDGLAC +I+ LCL G+VL+GF L+++ E + LS +DSDI+S+LL+GL
Sbjct: 360 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 419
Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
+K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E++ L
Sbjct: 420 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIVMYL 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA S AE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 11 SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 65
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 66 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 125
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 126 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 185
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 186 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 245
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 246 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 305
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV K L+EAEKL
Sbjct: 306 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 365
Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
F +MLA+ VKPDGLAC +I+ LCL G+VL+GF L+++ E + LS +DSDI+S+LL+GL
Sbjct: 366 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 425
Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
+K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E+ T+
Sbjct: 426 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHF 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/470 (61%), Positives = 375/470 (79%), Gaps = 1/470 (0%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
SL R LS S+ K SKI LHFTT S A++ YTHLQ NPNN+EK+L ++K KLD+ CV E
Sbjct: 5 SLPRFLSLSIAPKTSKISTLHFTT-SLADKLYTHLQNNPNNVEKSLNSIKPKLDTRCVTE 63
Query: 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
VLH+C + SQ+G+RFF+WA QS+YRHSSF+Y++AC++ IKQNP ++D+ E Y+ E
Sbjct: 64 VLHKCSLNNSQIGLRFFVWAGYQSNYRHSSFLYSKACKLFNIKQNPQAVLDLFEFYRAEK 123
Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
CVV++K KV+ NLC++ LANEA VLRKM EFD++ DT Y VIRLFC+KGDM A
Sbjct: 124 CVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQ 183
Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
+LM M DLYPD++TYVS+IKGFC+ GRLE+AC L K M+ HGC N+V YS L+DGI
Sbjct: 184 KLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGI 243
Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
CR GS+ERALELLG MEKEGGDC+PNV+TYTSVIQ C KG +A +LDRMEA GCAP
Sbjct: 244 CRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEACGCAP 303
Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
NRVT+STL+K C++G+L+EAY+LID+VVAGGSVSS CYS +VV L+R K+++EAEKLF
Sbjct: 304 NRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSPIVVCLIRIKKVEEAEKLF 363
Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
+ + SGVKPDGLACS+MI+ELC +VL+G+CL+++IEKIG LS++DSD +SVLL+GLC
Sbjct: 364 RRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKIGSLSTIDSDTYSVLLVGLC 423
Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
++ +S+EAAKLAR +++KRI L+ PYVDK+VE++KK G +L+T L IG
Sbjct: 424 QQGYSLEAAKLARSLIEKRIHLKHPYVDKVVEYMKKFGVTDLVTELASIG 473
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/471 (58%), Positives = 350/471 (74%), Gaps = 1/471 (0%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKA-KLDS 59
M FSL+R + S+ K KI LHF T S E+ HLQ +PNN+EKTL ++ KLD+
Sbjct: 1 MSLFSLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDT 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
V +++HR + Q+G+RFFIWA Q +YRH+ ++YN+AC + +IKQNP +I+D++E
Sbjct: 61 KYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIET 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
YK E CVV V KV+ LC+ LA+EA+ VL+KMPEF++RPDT YN VIR CEKGD
Sbjct: 121 YKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ A +LM MGLIDLYPD+ITYVSMIKGFC+ GRLE+A LF VM HGC N+VAYSA
Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSA 240
Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
LLDGICR G +ERA ELL EMEK+G C PNV+TYTSVIQ FC +G K+AL +L+ ME
Sbjct: 241 LLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEV 300
Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
GCAPNRVT S I G C G L + Y I+++VAGGSVS G CYSSLVV L++ K+++E
Sbjct: 301 RGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIKKVEE 360
Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
AEK F + L+SG+KPD LACS+MIRE+C +VL+GFCLYE++EK G LSS+D DI+S+L
Sbjct: 361 AEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDIDIYSIL 420
Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
L GLC++ HS EAA+LAR ML+KRI L+ P+V+KIVEHLK G +EL+ L
Sbjct: 421 LAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKELVAEL 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 354/473 (74%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDST 60
M F +S SSS + S + H T S ++ FY HL+K+ N++KTLAT+K KLDS
Sbjct: 1 MALFRISCPRSSSFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR 60
Query: 61 CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
CV EVL++C SQMG+RFFIWA Q +YRHSSFMY+RACE+ I +P ++ +V+E Y
Sbjct: 61 CVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDY 120
Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
+ EGC+V ++M K+I NLC++A+LA EA+ +LRKM EF LR DT +YN VIRLF EKG+M
Sbjct: 121 RREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEM 180
Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
A ELMK M +D++P++ITY+SM+KGFC+ GR EDA GLFK MK +GCA N V YS L
Sbjct: 181 DKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVL 240
Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
++G RL M+R +E+L EMEK+GG CSPN VTYTS+IQ C +G EAL +LDRME
Sbjct: 241 VNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEY 300
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
G APNRV +S L+K FC +G+++EAY+LID+VVA G VS G CYSSLVV LV+ K++ EA
Sbjct: 301 GYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSSLVVTLVKMKKIAEA 360
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
EKLF MLA+GVKPDG+ACS+MIRELCL +VL+GF L ++++ G+L S+D+DI+S+LL
Sbjct: 361 EKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFNLCYEVDRNGYLCSIDADIYSLLL 420
Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
+GLC +HSV+AAKLAR MLKK I L+ Y + I++HLKK D EL+ +L I
Sbjct: 421 VGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHLGGI 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790927|ref|XP_002863348.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309183|gb|EFH39607.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/470 (54%), Positives = 337/470 (71%), Gaps = 6/470 (1%)
Query: 6 LSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
+SR+L S+ SKI AL F TT S A+R Y HLQ +N EK LA+ LDS+ + E
Sbjct: 6 ISRLLPPSLLSHPSKISALRFSTTVSAADRLYGHLQGGTSNPEKDLASANVNLDSSSINE 65
Query: 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
V+ RC P+Q Q+G+RFFIWA QSS+RHS +MY +AC+ +I+ NP +I DVVEAYK+E
Sbjct: 66 VIRRCDPNQFQLGLRFFIWAGTQSSHRHSPYMYTKACDFLKIRANPDLIKDVVEAYKKEE 125
Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
C VSVK M ++ LC +A+LA+EA+WVLRK PEFDL DT+ YN VIRLF +KGD+ AD
Sbjct: 126 CFVSVKTMWIVLTLCNQAKLADEALWVLRKFPEFDLCADTVAYNLVIRLFADKGDLSMAD 185
Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
LMK M +DLYPD+ITY +MI G+CNAG++++A L K M +H C N V YS +L+G+
Sbjct: 186 MLMKEMDCVDLYPDVITYTAMINGYCNAGKIDEAWKLAKEMSKHDCVLNTVTYSRILEGV 245
Query: 245 CRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
C+ G ME ALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM GC
Sbjct: 246 CKSGDMETALELLAEMEKEDGGGLISPNAVTYTLVIQSFCEKKRIREALLVLDRMGDRGC 305
Query: 303 APNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
PNRVT S LI+G +E + D + +LIDK+V G VS C+SS V L+R KR +EA
Sbjct: 306 TPNRVTASVLIQGV-LENDEDVKDLSKLIDKLVKLGGVSLSECFSSATVSLIRMKRWEEA 364
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
EK+F ML G++PDGLAC+ + RELCL + L+ F LY++IEK S++DSDI++VLL
Sbjct: 365 EKIFRLMLVRGIRPDGLACTHVFRELCLSERYLDCFVLYQEIEKEDVKSTMDSDIYAVLL 424
Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
LGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 425 LGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMSRF 474
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/437 (54%), Positives = 325/437 (74%), Gaps = 2/437 (0%)
Query: 29 ASPAERFYTHLQK-NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
+S A+ YTHL K N IE L+ K KLDS CVI+VL++CFP QSQ+G+RFFIWA Q
Sbjct: 4 SSIADTLYTHLNKTNGITIENALSKTKPKLDSQCVIQVLNKCFPKQSQLGVRFFIWAGFQ 63
Query: 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
S YRHS +MY + C + I +NP II DV++AY+ +GCVV+V M + + LC++A +
Sbjct: 64 SGYRHSGYMYRKVCNLFEIDKNPEIICDVIKAYEVDGCVVNVNMFREVLKLCKEAENVDL 123
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
+WVLRKM +F+++PDT++YN VI+L C++GD+ ++LMK M L + PD+ITY++MI+
Sbjct: 124 GLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIE 183
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
G C+AGRLE+A + KVM+ +GC+ N V SA+LDG+CRL SMERALELL EMEK GDC
Sbjct: 184 GLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDGLCRLDSMERALELLDEMEK-SGDC 242
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
PNVVTYTS+IQ FC +G EAL ILDRM A GC N VT+ TLI+ C EG +DEAY+
Sbjct: 243 CPNVVTYTSLIQSFCKRGEWTEALNILDRMRAFGCFANHVTVFTLIESLCTEGRVDEAYK 302
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
++DK+V VS G CY+SLV+ +R K+L+ AE LF +MLA+ +KPD LA S++++ELC
Sbjct: 303 VVDKLVVEHCVSRGDCYNSLVISFIRVKKLEGAENLFKEMLAAEIKPDTLASSLLLKELC 362
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
L +VL+GF L + IE +GFLSS+DSDI+S++L+GL +KNH EA KLA+ MLKK I L+
Sbjct: 363 LKDRVLDGFYLLDTIENMGFLSSIDSDIYSIMLIGLWQKNHLTEATKLAKIMLKKAIPLR 422
Query: 448 GPYVDKIVEHLKKSGDE 464
PY D+ ++ L+K G++
Sbjct: 423 PPYKDRAIDILRKYGEK 439
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238076|ref|NP_199547.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180684|sp|Q9LVS3.1|PP422_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g47360 gi|8809619|dbj|BAA97170.1| unnamed protein product [Arabidopsis thaliana] gi|332008119|gb|AED95502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/473 (53%), Positives = 339/473 (71%), Gaps = 6/473 (1%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
GC PNRVT LI+G +E + D +LIDK+V G VS C+SS V L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/370 (62%), Positives = 290/370 (78%), Gaps = 14/370 (3%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA SPAE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 5 SVSRLLPYSIRHKNP-----NFSTALSPAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 60 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G L + + EA KL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYVG--------LSQKRHSVEAVKL 351
Query: 364 FSKMLASGVK 373
M+ G++
Sbjct: 352 ARLMVDRGIQ 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/466 (51%), Positives = 328/466 (70%), Gaps = 11/466 (2%)
Query: 18 NSKIFALHFTTASPAERFYT-------HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCF 70
N ++F T + A F T HL ++ ++E +L+ VK KLDS +I+VL+ C
Sbjct: 6 NFQLFLPFHTLKTKALPFSTLIDVLCSHLHQSNGSVEHSLSKVKPKLDSQSIIQVLNTCR 65
Query: 71 --PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
P Q Q+G+RFF+WA QS YRHSS+MY +A + RI NP II DV+E+Y+ EG +V+
Sbjct: 66 DRPYQPQLGVRFFVWAGFQSGYRHSSYMYTKASYLLRIHHNPQIIRDVIESYEAEGSLVT 125
Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
V M + + LC++A+LA+ A+WVLRKM + F+L DT++YN VIRL C+KGD+ A +L
Sbjct: 126 VNMFREVLKLCKEAQLADMALWVLRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLT 185
Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
M L PD+ITY+++++GF NAGR E+A + KVM+ HGC+ NLV SA+LDG CR
Sbjct: 186 SEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRS 245
Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
GSMERALELL EMEK GG C+PNVVTYTSVIQ FC +G KEAL ILDRM+A GC N V
Sbjct: 246 GSMERALELLDEMEK-GGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANHV 304
Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
T+ TL++ C +G++++ Y L DK V VS G YSSLV+ L+R K+L+EAEKLF +M
Sbjct: 305 TVFTLVESLCADGHVEQGYGLFDKFVVEHCVSYGDFYSSLVISLIRIKKLEEAEKLFKEM 364
Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
LA V+ D LA S++++ELC+ ++L+GF L E IE G LSS+DSDI+S+LL+GLC+++
Sbjct: 365 LAGDVRLDTLASSLLLKELCMKDRILDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRS 424
Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
H EA KLA+ MLKK + LQ P+ D ++ L KSG+++L+ L I
Sbjct: 425 HLKEATKLAKIMLKKSVLLQPPHKDAAIDILIKSGEKDLVNQLTGI 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2171474 | 477 | AT5G47360 [Arabidopsis thalian | 0.983 | 0.979 | 0.498 | 3.8e-117 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.928 | 0.691 | 0.259 | 1.9e-35 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.890 | 0.664 | 0.261 | 4e-33 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.848 | 0.750 | 0.229 | 2.9e-32 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.844 | 0.760 | 0.260 | 3.2e-32 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.747 | 0.573 | 0.260 | 3.4e-32 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.675 | 0.498 | 0.267 | 6.7e-32 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.675 | 0.516 | 0.279 | 1.6e-31 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.562 | 0.291 | 0.305 | 2.7e-31 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.701 | 0.528 | 0.259 | 2.8e-31 |
| TAIR|locus:2171474 AT5G47360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 236/473 (49%), Positives = 320/473 (67%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERAXXXXXXXXXXXXD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERA SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD-EAY-QLIDKXXXXXXXXXXXXXXXXXXELVRTK 355
GC PNRVT LI+G +E + D +A +LIDK L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 120/462 (25%), Positives = 210/462 (45%)
Query: 3 RFSLSRILSS----SVNIKNSKIFAL---HFTT-ASPAERFYTHLQKNPNNIEKT-LATV 53
RF +SR+L++ S KN H A E+ Y L+ + + + K LA
Sbjct: 30 RFHISRVLNNDFVESTERKNGVGLVCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELALN 89
Query: 54 KAKLDST--CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHS-SFMYNRACEMSRIKQNP 110
++ +D +I VL RC + +G RFF+WA Q Y HS + +S+++Q
Sbjct: 90 ESGIDLRPGLIIRVLSRCGDA-GNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFG 148
Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
++ + E K ++ ++ V+ A + +A+ VL +MP++ L PD ++ +
Sbjct: 149 AVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCL 208
Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITY-VSMIKGFCNAGRLEDACGLFKVMKRHG 229
+ C+ G + A ++ + M + +P + Y S++ G+C G+L +A + MK G
Sbjct: 209 LDALCKNGSVKEASKVFEDMR--EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 230 CAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCG-KGMMK 288
++V ++ LL G G M A + PNV YT +IQ C + M
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFE--PNVNCYTVLIQALCRTEKRMD 324
Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXX 348
EA+ + ME GC + VT + LI GFC G +D+ Y ++D
Sbjct: 325 EAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIM 384
Query: 349 XELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
+ ++ +E +L KM G PD L +V+IR C G+V E L+ ++E G
Sbjct: 385 VAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLS 444
Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
VD+ + +++ G + +EA + M+ + I+ Y
Sbjct: 445 PGVDTFV--IMINGFTSQGFLIEACNHFKEMVSRGIFSAPQY 484
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 115/439 (26%), Positives = 205/439 (46%)
Query: 17 KNSKIFALHFTTASPAERFYTHLQKNPNNIEKT-LATVKAKLD-STCVIE-VLHRCFPSQ 73
KNSK + AS E+ Y L+K + + K LA ++ ++ +IE VL+RC +
Sbjct: 72 KNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDA- 126
Query: 74 SQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
+G RFF+WAA Q Y HS +Y + +S+++Q ++ + E KE ++ ++
Sbjct: 127 GNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELF 186
Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
V+ A + +A+ VL +MP+F PD ++ ++ C+ G + A +L + M +
Sbjct: 187 VVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRM 246
Query: 193 IDLYPDIITY-VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
+P + Y S++ G+C G++ +A + M G ++V Y+ LL G G M
Sbjct: 247 --RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMA 304
Query: 252 RAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
A + PN YT +IQ C M+EA+ + ME C + VT +
Sbjct: 305 DAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTA 362
Query: 312 LIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASG 371
L+ GFC G +D+ Y ++D + + +E +L KM
Sbjct: 363 LVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIE 422
Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
PD +V+IR C G+V E L+ ++E+ G VD+ + +++ GL + +E
Sbjct: 423 YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLASQGCLLE 480
Query: 432 AAKLARFMLKKRIWLQGPY 450
A+ + M+ + ++ Y
Sbjct: 481 ASDHFKEMVTRGLFSVSQY 499
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 98/427 (22%), Positives = 206/427 (48%)
Query: 61 CVIE----VLHRCFPSQSQMGIRFFIWAALQSSYRHSS-FMYNRACEMS-RIKQNPSIII 114
CVIE V H QS + FF WA + Y H S YN ++S +++Q +
Sbjct: 116 CVIEKCGSVRHGIPLHQS---LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF-DLAW 171
Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
+++ K +S++ ++ +A LA+EA+ +M ++ PD I ++ VI
Sbjct: 172 HLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNL 231
Query: 175 CEKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
K A L D + PD+I Y ++++G+C AG + +A +FK MK G N
Sbjct: 232 SRKRRASEAQSFFDS--LKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 234 LVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
+ YS ++D +CR G + RA C+PN +T+ +++++ G ++ L +
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSG--CAPNAITFNNLMRVHVKAGRTEKVLQV 347
Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVR 353
++M+ LGC P+ +T + LI+ C + NL+ A ++++ + +
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407
Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC-LYEDIEKIGFLSSVD 412
+ + A +++SKM+ + +P+ + ++++R + +G + + + ++++ +V+
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMR-MFVGSKSTDMVLKMKKEMDDKEVEPNVN 466
Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELI 467
+ + +L+ C H A KL + M++++ + ++ L+++G EEL+
Sbjct: 467 T--YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524
Query: 468 TNLPKIG 474
+ + G
Sbjct: 525 EKMIQKG 531
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 111/426 (26%), Positives = 199/426 (46%)
Query: 24 LHFTTASPAERFYTHLQKN---PNNIEKT-LATVKAKLDSTCVIEVLHRCFPSQSQMGIR 79
LH + A +TH+ ++ P+ I+ T L V AK+ V V++ C Q MG+
Sbjct: 48 LHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDV--VINLCDHLQI-MGVS 104
Query: 80 FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
++ + + N C+ S+ S + +++ E V ++ C
Sbjct: 105 HDLYTC--------NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLIN---GFC 153
Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
R+ EAM ++ +M E ++PD ++Y +I C+ G + A L M + PD+
Sbjct: 154 LGNRM-EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDV 212
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXX 259
+ Y S++ G CN+GR DA L + M + +++ ++AL+D + G A
Sbjct: 213 VMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNE 272
Query: 260 XXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
+PN+ TYTS+I FC +G + EA + ME GC P+ V ++LI GFC
Sbjct: 273 MIRMSI--APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 330
Query: 320 GNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
+D+A ++ + + + A+++FS M++ GV P+
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390
Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
+V++ LC G+V + ++ED++K + V +I ++VLL GLC N +E A +
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKRE-MDGVAPNIWTYNVLLHGLCY-NGKLEKALMVF 448
Query: 438 FMLKKR 443
++KR
Sbjct: 449 EDMRKR 454
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 3.4e-32, P = 3.4e-32
Identities = 95/364 (26%), Positives = 177/364 (48%)
Query: 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
S + N C R+ + +++ +VE K+ +V+V + I LC K R++ EA+ ++
Sbjct: 144 STLVNGFCLEGRVSEAVALVDRMVEM-KQRPDLVTVSTL--INGLCLKGRVS-EALVLID 199
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
+M E+ +PD + Y V+ C+ G+ A +L + M ++ ++ Y +I C G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVT 273
+DA LF M+ G A++V YS+L+ G+C G + + P+VVT
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR--NIIPDVVT 317
Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXX 333
++++I +F +G + EA + + M G AP+ +T ++LI GFC E L EA Q+ D
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 334 XXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
+ KR+ + +LF ++ + G+ P+ + + ++ C G++
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437
Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
L++++ G SV + + +LL GLC +A ++ M K R+ L G +
Sbjct: 438 AAKELFQEMVSRGVPPSVVT--YGILLDGLCDNGELNKALEIFEKMQKSRMTL-GIGIYN 494
Query: 454 IVEH 457
I+ H
Sbjct: 495 IIIH 498
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 6.7e-32, P = 6.7e-32
Identities = 88/329 (26%), Positives = 163/329 (49%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
+ N C ++ +I +VE + V ++ V +C+ + A AM +LRKM
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV---MCKSGQTAL-AMELLRKM 254
Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
E +++ D + Y+ +I C+ G + A L M + DIITY ++I GFCNAGR
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYT 275
+D L + M + + N+V +S L+D + G + A +PN +TY
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI--APNTITYN 372
Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXX 335
S+I FC + ++EA+ ++D M + GC P+ +T + LI G+C +D+ +L +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432
Query: 336 XXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
++ +L+ A+KLF +M++ V+PD ++ +++ LC G++ +
Sbjct: 433 GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492
Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
++ IEK +D I+ +++ G+C
Sbjct: 493 LEIFGKIEKSKM--ELDIGIYMIIIHGMC 519
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 92/329 (27%), Positives = 160/329 (48%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
+ N C ++ +I +VE + V ++KV +C+ + A AM +LRKM
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV---MCKSGQTAL-AMELLRKM 238
Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
E ++ D + Y+ +I C+ G + A L M + DII Y ++I+GFC AGR
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298
Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYT 275
+D L + M + ++VA+SAL+D + G + A SP+ VTYT
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI--SPDTVTYT 356
Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXX 335
S+I FC + + +A +LD M + GC PN T + LI G+C +D+ +L K
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416
Query: 336 XXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
+L+ A++LF +M++ V+PD ++ +++ LC G+ +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
++E IEK +D I+++++ G+C
Sbjct: 477 LEIFEKIEKSKM--ELDIGIYNIIIHGMC 503
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 83/272 (30%), Positives = 132/272 (48%)
Query: 114 IDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
+DVVE + + + ++I C K+ + ++AM VL KM E + PD + YN++I
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYC-KSNV-HKAMGVLNKMLERKVLPDVVTYNSLID 470
Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
C G+ +A L+ M L PD TY SMI C + R+E+AC LF +++ G
Sbjct: 471 GQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNP 530
Query: 233 NLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALG 292
N+V Y+AL+DG C+ G ++ A +C PN +T+ ++I C G +KEA
Sbjct: 531 NVVMYTALIDGYCKAGKVDEAHLMLEKMLSK--NCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELV 352
+ ++M +G P T + LI +G+ D AY +
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
R RL +AE + +KM +GV PD S +I+
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 89/343 (25%), Positives = 162/343 (47%)
Query: 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL 144
++ Y+ SF +N S + +V+ +GC + ++ N LC++ +
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
+ A+ +L+KM + + P +IYN +I C ++ A L M + P+++TY S
Sbjct: 238 -DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXX 264
+I+ CN GR DA L M N+V +SAL+D + G + A
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 265 XDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
D P++ TY+S+I FC + EA + + M + C PN VT +TLIKGFC +DE
Sbjct: 357 ID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 325 AYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
+L + + + A+ +F +M++ GV PD + S+++
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
LC G+V ++E +++ S ++ DI++ +++ G+C+
Sbjct: 475 GLCNNGKVETALVVFEYLQR----SKMEPDIYTYNIMIEGMCK 513
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LVS3 | PP422_ARATH | No assigned EC number | 0.5369 | 0.9831 | 0.9790 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00290074 | hypothetical protein (476 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 70/330 (21%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
C ++ + A+ VLR + E L+ D +Y +I + G + A E+ M + +
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506
Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
+ T+ ++I G AG++ A G + +M+ + V ++AL+ + G+++RA ++L
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKG----------MMKE------------------- 289
EM+ E P+ +T ++++ G M+ E
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 290 ------ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
AL I D M+ G P+ V S L+ G+LD+A++++ G
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
YSSL+ K K+A +L+ + + ++P + +I LC G Q+ + + +++
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
++G + + +S+LL+ + +
Sbjct: 747 RLGLCPNTIT--YSILLVA-SERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-15
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
P+VVTY ++I +C KG ++EAL + + M+ G PN T S LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
PD++TY ++I G+C G++E+A LF MK+ G N+ YS L+DG+C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 17/270 (6%)
Query: 129 VKMMKVIFNL----CEKARLANEAMWVLRKM-----PEFDLRPDTIIYNNVIRLFCEKGD 179
VK +V+FN C ++ + A VL +M P + PD I +++ G
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---IDPDHITVGALMKACANAGQ 594
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ A E+ + + ++ Y + G + A ++ MK+ G + V +SA
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
L+D G +++A E+L + K+G V+Y+S++ K+AL + + +++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQG--IKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 300 LGCAPNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
+ P T++ LI C EGN L +A +++ ++ G + YS L+V R
Sbjct: 713 IKLRPTVSTMNALITALC-EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL 388
L S+ G+KP+ + C + LCL
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 5e-12
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
++V Y+ L+DG C+ G +E AL+L EM+K G PNV TY+ +I C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG--IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
PD + YN +I +C+KG + A +L M + P++ TY +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
A+ + M + ++PD + ++ ++ + GD+ A E+++ + ++Y S++
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
NA + A L++ +K + +AL+ +C + +ALE+L EM K G C
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLC 751
Query: 268 SPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
PN +TY S++ + K L +L + + G PN + + I G C+
Sbjct: 752 -PNTITY-SILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL-------- 800
Query: 327 QLIDKVVAGGSVS 339
+ +K A G
Sbjct: 801 RRFEKACALGEPV 813
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 17/243 (6%)
Query: 125 CVVSVKMMKVIFNLC------EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
CV+ ++ F C K +A V MPE T+ +N+++ + G
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHG 304
Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
A L M + D T+ MI+ F LE A + R G ++VA +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
AL+D + G ME A + M ++ N++++ ++I + G +A+ + +RM
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK------NLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357
A G APN VT ++ G ++ +++ + + + + ++EL+ R L
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
Query: 358 KEA 360
EA
Sbjct: 479 DEA 481
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 49/245 (20%)
Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLED 217
PD + N V+ + + G +I A L M P+ + ++ ++I G +AG +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 218 ACGLFKVM-----------------------------KRHGCAANLVAYS------ALLD 242
A LF+ M + H C AL+D
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
+ G +E A + M ++ V + S++ + G +EAL + M G
Sbjct: 268 MYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
+ ++ T S +I+ F L+ A Q ++ G ++LV + R+++A
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 363 LFSKM 367
+F +M
Sbjct: 382 VFDRM 386
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 4e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
G P+ VT +TLI G C G +DEA +L+D+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 5e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
L PD++TY ++I G C AGR+++A L M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
Y++L+ + +++EA KLF++M G+KP+ S++I LC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
P+VVTY ++I C G + EA+ +LD ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 36/258 (13%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
A V +MP R D I +N +I + E G+ + EL M + + PD++T S+I
Sbjct: 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 208 GFCNAGRLEDACGLFK-----------VMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
AC L V+K G A ++ ++L+ LGS A ++
Sbjct: 297 ----------ACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
ME + + V++T++I + G+ +AL ME +P+ +TI++++
Sbjct: 346 FSRMETK------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
G+LD +L + G +S ++L+ + K + +A ++F + V
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV---- 455
Query: 377 LACSVMIRELCLGGQVLE 394
++ + +I L L + E
Sbjct: 456 ISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEME 261
G ++V Y+ L+DG+CR G ++ A+ELL EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
+TY S+I G+C AG+LE+A LFK MK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
+TY ++I G C AGR+E+A LFK MK G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 36/183 (19%)
Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIR-------LFCEKGDMIAADELMKGMG-------- 191
EA+ R+M L+P+++ + L C G I A L G+G
Sbjct: 473 EALIFFRQM-LLTLKPNSVTLIAALSACARIGALMC--GKEIHAHVLRTGIGFDGFLPNA 529
Query: 192 LIDLY-----------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
L+DLY D++++ ++ G+ G+ A LF M G +
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
V + +LL R G + + LE ME++ +PN+ Y V+ + G + EA +
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 295 DRM 297
++M
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
VTY ++I C G ++EAL + M+ G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
++ N +I ++ + + A E+ + D+I++ S+I G R +A F+
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 225 MKRH-------------GCAA--------NLVAY-------------SALLDGICRLGSM 250
M CA + A+ +ALLD R G M
Sbjct: 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
A EK+ VV++ ++ + G A+ + +RM G P+ VT
Sbjct: 541 NYAWNQFNSHEKD-------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRLKEAEKLFSKMLA 369
+L+ G + + + + S++ + + VV+L+ R +L EA +KM
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-- 651
Query: 370 SGVKPD 375
+ PD
Sbjct: 652 -PITPD 656
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
VTY S+I +C G ++EAL + M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
++I++ ++I G+ N GR A +F+ M G A N V + A+L G E+ E+
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS---TLIK 314
M + P + Y +I++ +G++ EA ++ R AP + T++ L+
Sbjct: 450 QSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVNMWAALLT 502
Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
+ NL+ +K+ G Y L+ + R EA K+ + G+
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNN-YVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG 264
V Y++L+ G C+ G +E ALEL EM+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
V Y+ L+DG+C+ G +E ALEL EM++ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG--IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 31/165 (18%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
D + N++I+++ G A+++ M D +++ +MI G+ G + A +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
+M++ + + + +++L LG ++ ++L E++G VV ++I+++
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG--LISYVVVANALIEMYS 435
Query: 283 GKGMMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEA 325
+ +AL + + P + IS ++I G + EA
Sbjct: 436 KCKCIDKALEVFHNI------PEKDVISWTSIIAGLRLNNRCFEA 474
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
Y++L+ L + R++EA +LF +M G++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
+ TY +++ AG + A + + MK G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEG 264
L Y+ALL + + G + AL +L EM+ G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.61 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.45 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.42 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.34 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.26 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.26 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.15 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.94 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.87 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.73 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.46 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.74 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.12 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.56 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.33 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.25 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.24 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.61 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.52 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.48 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 91.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.75 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.67 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.35 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.37 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.19 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.04 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.57 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.57 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.37 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.91 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.9 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.49 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.45 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.74 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.61 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.38 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.74 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.16 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.91 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.73 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.45 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=487.93 Aligned_cols=379 Identities=19% Similarity=0.257 Sum_probs=274.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.+....|+++|..+.. |+..+|+.++..+++.++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3445555555544321 66777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR--H 228 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 228 (475)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777765 4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
|+.||..+|++++.+|++.|++++|.++|++|.+ .+++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5677777777777777777777777777777777 34567777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777777655 66777777777777777777777777777777777777777766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=479.73 Aligned_cols=411 Identities=17% Similarity=0.248 Sum_probs=391.0
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011919 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
..+...+..++.++ ..++...|+++|.++....-..++...+..++..+.+.+..+.|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 33444555555654 67889999999999977655677888888899999999999999999998864 89999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
++.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765678999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
|..+|+.||.+|++.|++++|.++|++|.+.|+.| +..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011919 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+.+|.+.|+.+.|.++.+
T Consensus 761 L~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 761 LVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=465.13 Aligned_cols=399 Identities=16% Similarity=0.175 Sum_probs=359.5
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..+.+..|+++|.|+....++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33566677665 67889999999999987777889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|+.+||.+|.+|++.|++++|+++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988864 68889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999988888888888888888888888888888885 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQGPYVDKIVE 456 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 456 (475)
+|+.||.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 88888888888888888888888888888876 888888888888888888888888888876 588888888888888
Q ss_pred HHHhcCCHhHHhhcccc
Q 011919 457 HLKKSGDEELITNLPKI 473 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~~ 473 (475)
+|.+.|+.++|.++.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 88888888888877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=439.33 Aligned_cols=398 Identities=17% Similarity=0.178 Sum_probs=359.4
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011919 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++...+..++..| ..++...+.+++..+ ...|+.|+..+|+.++..+.+.|+++.|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 356788899999987 566777788887655 4568999999999999999999999999999999854 7999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+ .++.||..+|+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999864 5889999999999999999999999999988 45789999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999865 57788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
||..||+.++.+|++.|++++|.++|+.|.+ .|+.| +..+|+.++++|++.|++++|.+++++| ++.|+..+|+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 9999999999999999999999999999986 57766 7889999999999999999999988765 5678888888
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011919 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.+|...|+.+.++++.+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 88888888888888776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=443.67 Aligned_cols=396 Identities=18% Similarity=0.174 Sum_probs=296.7
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011919 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...++.++..+ ..+....|+++|..+. ..++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 334455555553 4566666777666553 45677777777777777777777777777777777778888888888888
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 888888888888888888864 6778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888864 6778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 875 5889999998888888888888888888888777777666666666666666666666666666554 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML-KKRIWLQGPYVDKIV 455 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~ 455 (475)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 666666666666666666666666666666654 56666666666666666666666666666 456666666666666
Q ss_pred HHHHhcCCHhHHhhccc
Q 011919 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.++|.++.+
T Consensus 633 ~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 633 DLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 66666666666666553
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=437.09 Aligned_cols=399 Identities=16% Similarity=0.158 Sum_probs=302.1
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH
Q 011919 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (475)
+++...+.++..+ ..+....|+.+|..+. ..+..|+..+|..++..+...+..+.+..++..+.+.+..++...+|.+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3444455555553 5667777777777654 3466677777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+..|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 7777777777777777777764 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
+.+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777754 577777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777775 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++++.|.+.|+.++..+++.++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P--d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 7777777777777777777777777777777765 66777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHhHHhhccc
Q 011919 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.+.|.++.+
T Consensus 432 ~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 432 EMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 77777777777776653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-24 Score=223.69 Aligned_cols=386 Identities=11% Similarity=0.017 Sum_probs=327.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.+.-..... +.+...+..+...+...|+.+.|...++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 511 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 4677788888877665432 3466777788888888999999999999887765 566777888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.+++.+.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999987654 4577889999999999999999999999987654 4567778888899999999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++.+...+ |+..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3467888999999999999999999999998753 5677788888999999999999999999998864 555777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+..++.+.|++++|.+.++.+.+.... +...+..+...|...|+.++|.+.|+++.+.. +.+...+..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999886543 67888999999999999999999999999865 45678889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011919 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
|+ .+|+.+++++.+.. | .+..++..+...+...|++++|.++++++++.+ +.++.++..+..++.+.|+.++|.+
T Consensus 818 ~~-~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA--P-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc-HHHHHHHHHHHhhC--C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99 88999999998864 2 366788899999999999999999999999988 5589999999999999999999998
Q ss_pred cccc
Q 011919 470 LPKI 473 (475)
Q Consensus 470 l~~~ 473 (475)
+++.
T Consensus 893 ~~~~ 896 (899)
T TIGR02917 893 ELDK 896 (899)
T ss_pred HHHH
Confidence 8753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-23 Score=219.47 Aligned_cols=376 Identities=12% Similarity=0.046 Sum_probs=206.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|..++.-... ..+.+...+..+...+...++++.|.+.++.+.+.. +.+...+..+...+...|++++|..
T Consensus 444 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555554443322 223344555556666666666666666666665543 3344455555556666666666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 2345555666666666666666666666655433 3344555555666666666666666666655432
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3345556666666666666666666666665532 2344455555666666666666666666655432 22345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555556666666666655555442 23444555555555566666666666655544 233344445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+.++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++++.. +.++..+..+...+.+.|+
T Consensus 751 ~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555555555555543 1244555555555555555555555555555554 4444455555555555555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=185.57 Aligned_cols=298 Identities=13% Similarity=0.108 Sum_probs=173.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhhHHHHHHHHHhcCChh
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD---TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~ 181 (475)
...++++.|...+..+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44566667777777766653 34455666666666677777777777766665321111 234566666666667777
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777776666542 34555666666666667777777776666665442221 113344555566666666666666
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++.+.+..
T Consensus 204 ~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 204 KKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666532 233445555666666666666666666666654322223445556666666666666666666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 011919 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.|
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33334455666666666666666666665544 4565566555554443 33566666666666665554433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=185.28 Aligned_cols=304 Identities=14% Similarity=0.071 Sum_probs=252.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhc
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 212 (475)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 335567899999999999999865 34667899999999999999999999999987532221 25678889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 289 (475)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. ..+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999998763 45778999999999999999999999999987531 1111 2245667778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|.+.++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3346678888899999999999999999999865443356788999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC
Q 011919 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~ 446 (475)
. .|+...+..+...+.+.|++++|..+++++.+.. | +...++.++..++. .|+.++++.++++|.++++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6 5676777888999999999999999999998863 3 66788888877764 569999999999999998887
Q ss_pred Chh
Q 011919 447 QGP 449 (475)
Q Consensus 447 ~~~ 449 (475)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-18 Score=169.80 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=177.9
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+.++.-...... ........+.......|+++.|.+.++.+.+.. +-+...+..+...+.+.|++++|.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666544433221 122233333344445666666666666666543 444555555566666666666666
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666665532 2345556666666666666666666666554432 1222222222 23556666666666666665543
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE----ALGILDRMEALGCAPN 305 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 305 (475)
..++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...+++..+.. +.+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 22333344444556666666666666666666532 3345555556666666666654 566666665542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIR 384 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~ 384 (475)
...+..+...+...|++++|...+++....... +...+..+..++.+.|++++|.+.|+++.+. .|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 455566666666666666666666666654432 3344555666666666666666666666644 333322 222344
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 385 ELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++...|+.++|...|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 556666666666666666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-17 Score=165.37 Aligned_cols=365 Identities=12% Similarity=-0.036 Sum_probs=262.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011919 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.....+...++++.|+..++...+. .|+...|..+..+|.+.|++++|+..++...+.+ +.+...|..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444556677778888777776654 4566667777777777788888888777776653 235566777777777777
Q ss_pred ChhHHHHHHHHhccCC-----------------------------CCCChhhHHHH------------------------
Q 011919 179 DMIAADELMKGMGLID-----------------------------LYPDIITYVSM------------------------ 205 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l------------------------ 205 (475)
++++|+..|......+ .+++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7777765543322110 00000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 206 ------IKGF------CNAGRLEDACGLFKVMKRHG-C-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 206 ------i~~~------~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~ 365 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVT 365 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcH
Confidence 0000 12357889999999988765 2 2345678888888999999999999999998743 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++.++.+.. +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 678888889999999999999999988763 335778888889999999999999999999887643 466677888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---ch-hhHHHHHHHHHhcC
Q 011919 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DS-DIHSVLLLGLCRKN 427 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~-~~~~~li~~~~~~g 427 (475)
.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++..+....... +. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988652 234678888888999999999999999998886421100 00 11222223334469
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
++++|.+++++.+... +.+...+..+.+.+.+.|++++|.+..+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998876 55556788899999999999999876643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-17 Score=176.91 Aligned_cols=386 Identities=10% Similarity=0.002 Sum_probs=232.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHH------------HHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMK------------VIFN 137 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~li~ 137 (475)
.++.+.|...|....... +.+...+..+...+.+.+++++|+..++...+..... ....+. ....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 566666776666654432 2355666666677777777777777777766543211 111111 1123
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 4556777777777777776653 2345566667777777777777777777776543 223333333333332 122333
Q ss_pred HHHHHHHHHHCCCC--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011919 218 ACGLFKVMKRHGCA--------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 218 a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
|..+++.+...... .....+..+...+...|++++|.+.|++..+.. |.+...+..+...|.+.|++++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHH
Confidence 33333222111000 000112223333444555555555555554432 2233344444555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTI--------------------------------------------STLIKGFCVEGNLDEA 325 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g~~~~a 325 (475)
|...++++.+... .+...+ ..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555443211 111111 1233445566677777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++.+.+.
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666651 22345567778889999999999999999999763 335678888999999999999999999988875
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--L---QGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 406 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
. +.+..++..+..++.+.|++++|.+++++++..... + +...+..+...+.+.|+.++|.+.++.|
T Consensus 667 ~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 667 A---NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred C---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 235667788888999999999999999999876422 2 2246667788999999999998876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-18 Score=170.97 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=275.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
..++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345667788899999999999988865 4445566666677778999999999999998864 34677888899999999
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++++|.+.+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998754 456778888999999999999999999988776433 33344333 3488899999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE----AYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~ 333 (475)
+.+.+.. ..++...+..+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...++...
T Consensus 201 ~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9987742 12344455566778899999999999999998764 3456778888999999999986 899999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.... +...+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|...++.+.+.. | .+
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P-~~ 351 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G-VT 351 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c-cc
Confidence 87643 6778999999999999999999999999976 344 5567778889999999999999999999864 2 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
...+..+..++...|++++|.+.|++.++......+..|...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 344555677889999999999999999988644334445433333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-17 Score=163.70 Aligned_cols=404 Identities=9% Similarity=-0.001 Sum_probs=300.0
Q ss_pred cCCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhH
Q 011919 54 KAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132 (475)
Q Consensus 54 ~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (475)
...+++..+..-+.-. ..++...|++.+.-... .-+.+...+..+...+...++++.|.++++...+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456777777666653 68899999987666543 123455567888889999999999999999988764 5567777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 212 (475)
..+..++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788889999999999999999998763 34566 8888999999999999999999998765 44566667788888889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCcHH-HHH--
Q 011919 213 GRLEDACGLFKVMKRHGCAANL------VAYSALLDGIC-----RLGSM---ERALELLGEMEKEGGDCSPNVV-TYT-- 275 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~-- 275 (475)
+..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+... ..|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-~~p~~~~~~~~a 239 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-DNPDATADYQRA 239 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-cCCccchHHHHH
Confidence 999999998886654 2221 11222233222 22334 778888888885311 122221 111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHH
Q 011919 276 --SVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVV 349 (475)
Q Consensus 276 --~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 349 (475)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1134456779999999999999887532 332 22335678999999999999999987654321 1244666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGV-----------KPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
++...|++++|.++++.+.+... .|+. ..+..+...+...|+.++|++.++++.... |.+...
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~l 395 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQGL 395 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 88999999999999999886521 1232 244556678889999999999999998864 346888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+..+...+...|++++|++.+++.+... |.+...+......+.+.|++++|+.+++
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999887 6667777788889999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=159.59 Aligned_cols=362 Identities=14% Similarity=0.057 Sum_probs=237.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHH-HH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN-VI 171 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll 171 (475)
-.+.|..+..++..+|+.+.|+.+++.+.+.. +-..+.|.-+..++...|+.+.|.+.|....+. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45678888888899999999999999888865 556788888888888889888888888887764 355443322 33
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+-..|+.++|...+.+..+.. +-=...|..|...+-..|+...|++.|++.++.... -...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 33344677777777776665532 222455677777777777777777777777765311 2456666777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
+|...|.+..... +-..+++..+...|...|+.|.|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.|+
T Consensus 270 ~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 7777777666532 234555666666666677777777777766654 333 4566777777777777777777777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
+.+..... .....+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|...+++..+.. |
T Consensus 345 kaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P 419 (966)
T KOG4626|consen 345 KALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--P 419 (966)
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--c
Confidence 76664432 2344566666777777777777777666643 343 3455666666666777777777777666632 2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.-...|+.+...|-..|+.++|++.+.+.+..+ |-=...++.+...+..+|+.++|..-.
T Consensus 420 -~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 420 -TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred -hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 235566666667766777777777776666655 333445566666677777766665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-16 Score=169.36 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=265.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhhHH-----------
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIYN----------- 168 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~----------- 168 (475)
...+...++++.|+..++...+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345567899999999999988865 5578888889999999999999999999988754221 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 169 -NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 169 -~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
.....+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 22446778999999999999998765 4566778888999999999999999999999864 335666777777764 5
Q ss_pred CChHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 248 GSMERALELLGEMEKEGGD------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
++.++|..+++.+...... .......+..+...+...|++++|++.+++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999988765432100 00112356678888999999999999999998864 2256677888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------------------------- 370 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------- 370 (475)
+++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999875432 2333333333334444444444444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 --------GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..+.+...+..+...+.+.|+.++|+..++++.+.. +.+...+..++..|...|++++|++.++...+.
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 012344556667777888899999999999888864 346788888899999999999999999987765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 443 RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
. +.+......+..++.+.|++++|.++++
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 4566677778888888999998887664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-16 Score=157.80 Aligned_cols=361 Identities=13% Similarity=0.011 Sum_probs=277.5
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|...... .|+...|..+...+...++++.|++.++...+.. +.+...|..+..++...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 468889999999887643 3567788888888999999999999999988875 556778888899999999999998
Q ss_pred HHHHhcccCC-C----------------------------CCCHhhHHHH------------------------------
Q 011919 150 WVLRKMPEFD-L----------------------------RPDTIIYNNV------------------------------ 170 (475)
Q Consensus 150 ~~~~~~~~~~-~----------------------------~~~~~~~~~l------------------------------ 170 (475)
.-|......+ . +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 7654332110 0 0000000000
Q ss_pred HHHH------HhcCChhHHHHHHHHhccCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 171 IRLF------CEKGDMIAADELMKGMGLID-L-YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 171 l~~~------~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+... ...+++++|.+.|++....+ . +.....|+.+...+...|++++|+..+++..+.. +-....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999988654 2 2345678888888999999999999999998863 224668888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
.+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999998853 4567889999999999999999999999998864 33567777888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL------ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~ 396 (475)
++|+..|+..++... .+...|+.+...+...|++++|.+.|++..+.....+.. .++.....+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999987643 256788999999999999999999999988653211111 1122222334469999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++++..+.. | .+...+..+...+.+.|++++|+++|++..+..
T Consensus 529 ~~~~kAl~l~--p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 529 NLCEKALIID--P-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhcC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999988864 2 356678999999999999999999999998764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=152.12 Aligned_cols=356 Identities=16% Similarity=0.077 Sum_probs=297.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH-HHHHHHHHcCCHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAM 149 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~ 149 (475)
.++.+.|++.+..+..... .....|..+...+...|+.+.|.+.+.+..+. .|+..... .+-......|+..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7888899998888765432 45778888999999999999999999887775 45544333 3555677789999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..|.+.++.. +-=...|..|...+-..|+...|+..|++..+.+ +.=...|-.|...|...+.+++|+..|.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9998887753 1234678999999999999999999999998654 2336788899999999999999999999888763
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.....+..+...|...|+++-|+..|++..+.. |.-...|+.|..++-..|++.+|.+.+.+..... +--....
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3356788889999999999999999999999853 2336789999999999999999999999988763 2345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCL 388 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 388 (475)
+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+-..|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHH
Confidence 88999999999999999999998875432 24568999999999999999999999998 45787 4788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+++.|.+.+.+.+..+ | .-.+.++.|...|-..|+..+|+.-+++.++..
T Consensus 435 ~g~v~~A~q~y~rAI~~n--P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN--P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hhhHHHHHHHHHHHHhcC--c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999865 2 356889999999999999999999999999876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-15 Score=150.13 Aligned_cols=391 Identities=10% Similarity=0.024 Sum_probs=237.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+..|........-.+ +..+ .++..+...|+.++|+..++.... ..+........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555555544432221100 1112 444444555555555555555541 11222222222233555555566666
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 6665555543 123444445555555555555565555555543 2333333333223323344434555555555543
Q ss_pred CCcCHHHHHHHHHHHHhcCCh------------------------------------------------HHHHHHHHHHH
Q 011919 230 CAANLVAYSALLDGICRLGSM------------------------------------------------ERALELLGEME 261 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~------------------------------------------------~~a~~~~~~~~ 261 (475)
+-+...+..++.++.+.|-. +.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 12333434444433333322 23333444443
Q ss_pred hcCCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 262 KEGGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 262 ~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
..-...|+....| --.+-++...|++.++++.++.+...|.+....+-..+..+|...+.+++|..+++.+.....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 3211223322222 223557788899999999999999888665666888899999999999999999999876542
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 011919 338 -----VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-------------VKPDGLA-CSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 338 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~ 398 (475)
.++......|.-+|...+++++|..+++++.+.. ..||-.. +..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233335778889999999999999999998731 1223222 33456678889999999999
Q ss_pred HHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
++++.... |-|......+...+...|++.+|.+.++...... |.+..+......++...|++.+|+++.
T Consensus 439 le~l~~~a---P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 439 LEDLSSTA---PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99998864 3588899999999999999999999997777775 667777888888999999999997765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-15 Score=153.31 Aligned_cols=371 Identities=9% Similarity=-0.007 Sum_probs=272.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...+.-..... +.+......+...+...++++.|...++...+.. +.+.. +..+..++...|+.++|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHH
Confidence 5788899999888765442 3456667788888899999999999999998874 55666 888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------hhHHHHHHHHH-----hcCCH---
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------ITYVSMIKGFC-----NAGRL--- 215 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~--- 215 (475)
..++++.+.. +.+...+..+..++...|..+.|++.++.... .|+. .....+++... ..+++
T Consensus 137 ~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 137 RAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 9999999864 33566667788888899999999999987764 2331 11222233222 22234
Q ss_pred HHHHHHHHHHHHC-CCCcCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011919 216 EDACGLFKVMKRH-GCAANLV-AYS----ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 216 ~~a~~~~~~m~~~-g~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+...+.+...+ +..+|...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHH
Confidence 7788888888864 2223221 111 113445677999999999999988532122223333 5778999999999
Q ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----------VSS---GGCYSSLVVELV 352 (475)
Q Consensus 290 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~ 352 (475)
|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987643211 134566677788999999999999999987532 122 234566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. | .+...+...+..+.+.|++++|
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--P-d~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--P-RNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--C-CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999998763 3346778888888999999999999999999865 3 4677888888889999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH
Q 011919 433 AKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.++++++++.. |+......+-+
T Consensus 447 ~~~~~~ll~~~--Pd~~~~~~~~~ 468 (765)
T PRK10049 447 DVLTDDVVARE--PQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHH
Confidence 99999999875 44444333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-15 Score=146.55 Aligned_cols=368 Identities=11% Similarity=0.013 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
.|...+ +..+.|+.+.|++.|++..+.. +-+ ...+ .++..+...|+.++|+..+++..... +........+...+
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 344433 5567899999999999998764 222 2344 78888888999999999999998311 12233333335688
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 88899999999999998876 455777778889999999999999999999886 566666655555555567776799
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------
Q 011919 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD--------------------------------------- 295 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------------------------------------- 295 (475)
+.++++.+.. |.+...+..+..++.+.|-...|.++.+
T Consensus 190 ~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 190 QASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999863 3456666666667666665444444332
Q ss_pred ---------HHHH-cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 296 ---------RMEA-LGCAPNRV-----TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 296 ---------~m~~-~~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
.+.. .+-.|... ...-.+-++...|+..++++.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2221 11112211 11233456778899999999999999888665566788899999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCCch-hhHHHHHHHH
Q 011919 361 EKLFSKMLASG-----VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF-----------LSSVDS-DIHSVLLLGL 423 (475)
Q Consensus 361 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~-~~~~~li~~~ 423 (475)
+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|.+|- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997642 122334457889999999999999999999998321 222222 3345567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
...|+..+|.+.++++.... |-|..........+...|+...|++.++.+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 89999999999999998888 899999999999999999999999988653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-15 Score=130.48 Aligned_cols=362 Identities=16% Similarity=0.165 Sum_probs=225.0
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH--HHHcCCHHHH-HHHHHhcccCC-------------------CCCC
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL--CEKARLANEA-MWVLRKMPEFD-------------------LRPD 163 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A-~~~~~~~~~~~-------------------~~~~ 163 (475)
..+....+.-+++.|.+.|++.+...--.|+.. |....++--| .+-|-.|...| .+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 345666677777888888777777766666552 2222211111 11122222211 1235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..+|.++|.++|+-...+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 667788888888888888888888877776667788888888776543332 6677778877778888888888888
Q ss_pred HHhcCChHH----HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHH
Q 011919 244 ICRLGSMER----ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEA----LGCAP----NRVTIS 310 (475)
Q Consensus 244 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~p----~~~~~~ 310 (475)
..+.|+++. |.+++.+|.+ .|+.|...+|..+|..+++.++..+ +..++.++.. ...+| |...|.
T Consensus 283 ~akfg~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 888886654 4456667777 5577888888888887777777644 3334444332 11222 344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGG----SVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 383 (475)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66777777777777777666554321 1121 1235556666677777777777777777665566667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCC-----------------------------------
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGF-----------------LSSV----------------------------------- 411 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~----------------------------------- 411 (475)
++....|.++-..++|..++..|- +|.|
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 777777777666666666655441 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW----LQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.....+.+...+.+.|+.++|.+++..+.+++-+ |.......+++.-....+...|...++.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2344566666677888888888888887654321 3333344566666666677777666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-13 Score=138.17 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=163.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... .|+...+..+..++
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 3333333433 5556666666665553 244333333344445788888888888876554 34444555666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.+.|+.++|...++...+.+.. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888876522 2233333344444569999999999998865 567888888888999999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..+++..+.. |.+...++.+...+...|++++|++.+++.++.. |-++..+..+..++...|+.++|...++.
T Consensus 630 ~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 630 SDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999875 3477888999999999999999999999999887 67788899999999999999998876643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-14 Score=125.25 Aligned_cols=362 Identities=11% Similarity=0.110 Sum_probs=256.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
+.+..+|..+|..+++-...+.|.+++.+........+..+||.+|.+-. +....++..+|....+.||..|+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 34567888888888888888999999998888878889999999887544 22237788888888888999999999
Q ss_pred HHHHHhcCChhH----HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----cCHHHH
Q 011919 171 IRLFCEKGDMIA----ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-ACGLFKVMKR----HGCA----ANLVAY 237 (475)
Q Consensus 171 l~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~----~~~~~~ 237 (475)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ .|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999997765 46677888888999999999999998888888654 3334444332 2222 245567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEG--GDCSPNV---VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
...|..|.+..+.+-|.++-.-+.... ..+.|+. .-|..+....|+....+..+..|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888765554311 1122332 23556777888888899999999999888788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHHHCC
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RL--------K-----EAEKLF-------SKMLASG 371 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~~-------~~m~~~~ 371 (475)
+++....|.++-.-++|.+++..|...+...-.-++..+++.. .. . -|..++ .+|.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 9999999999999999998888776554444444444455443 11 0 011111 223333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
.-.....+.+.-.+.+.|+.++|.+++..+.+.+-.-+ .....| -+++.-.+.+....|...++-|...+.+.-.
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip-~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP-RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 33445667777778999999999999999976653321 223344 5666777889999999999999877754444
Q ss_pred hhHHHHHHHHH
Q 011919 449 PYVDKIVEHLK 459 (475)
Q Consensus 449 ~~~~~l~~~~~ 459 (475)
..-+.+...|.
T Consensus 597 ~La~RI~e~f~ 607 (625)
T KOG4422|consen 597 GLAQRIMEDFA 607 (625)
T ss_pred HHHHHHHHhcC
Confidence 35555555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-12 Score=134.68 Aligned_cols=344 Identities=11% Similarity=0.007 Sum_probs=249.5
Q ss_pred hhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCC---hhHHH
Q 011919 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGD---MIAAD 184 (475)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~---~~~a~ 184 (475)
..++...+..|-+.. +-+......+--...+.|+.++|.++|+..... +-.++....+.++..|.+.+. ..++.
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 333444444444432 224445545555677888999999999987762 122344455577777777665 22332
Q ss_pred HH-------------------------HHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 011919 185 EL-------------------------MKGMGLIDLYP--DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237 (475)
Q Consensus 185 ~~-------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 237 (475)
.+ +....... ++ +...|..+..++.. ++.++|...+.+.... .|+....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 22 22222111 33 56677777777776 8888999988887765 3665554
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 45556667899999999999998663 4555566777888899999999999999998764 223333334444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 396 (475)
..|++++|...+++.++... +...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 66999999999999998664 5778999999999999999999999999976 454 566777777899999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+++..+.. |.+...+..+..++...|++++|...+++.++.. +-+..+.....+...+..+++.+.+-+
T Consensus 664 ~~l~~AL~l~---P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 664 EMLERAHKGL---PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999865 3478899999999999999999999999999887 555566666677777777676665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-13 Score=130.06 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHHhcCCHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a 218 (475)
.|+++.|.+.+.+..+.. |+. ..+-....++.+.|+++.|.+.+.+..+.. |+.. .--.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 455555555555444321 222 122222344444555555555555543321 2221 222234444455555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...++.+.+.. +-+..++..+...|.+.|++++|.+.+..+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555543 22344445555555555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-13 Score=126.91 Aligned_cols=283 Identities=13% Similarity=0.041 Sum_probs=174.0
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTII-YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV--SMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 218 (475)
.|+++.|.+.+....+.. +++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577888877777655432 12222 333344446777888888888777653 34443322 235567777888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH------HHHHHHHHHHHhcCCHHHHHH
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV------VTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 292 (475)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888777765 33667777777788888888888888887777432 11111 122233333334444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
+++.+.+. .+.+......+...+...|+.++|.+++++..+... +.. -.++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 66555432 234566667777777777777777777777766432 221 11233333457777777777777765
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 373 KPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 373 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|+ ...+..+.+.|.+.+++++|.+.|+...+.. |+...|..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333 4445566667777777777777777777653 2556666777777777777777777776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-12 Score=122.64 Aligned_cols=358 Identities=11% Similarity=0.021 Sum_probs=275.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+..+|+.+.|.+++.+..+.. +-....|-.|...|-+.|+.+++...+-..-..+ +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 45566699999999999998875 6788899999999999999999998887665443 457789999999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH----HHHHHHHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS----ALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~ 257 (475)
.|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+. .++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998876 5666666667788999999999999999999874333333332 3456677778889999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC---------------------------APNRVTIS 310 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~ 310 (475)
+.....+ +-..+...+++++..+.+...++.|......+..... .++... .
T Consensus 304 e~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 304 EGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887732 2235566788999999999999999998888776222 222222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
.++-++.+....+....+..........| +...|.-+..+|.+.|++++|+++|..+......-+...|-.+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334445555555555666666666433 5678889999999999999999999999977555567788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHh
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML--------KKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~ 460 (475)
.|..++|.+.++...... |.+..+--.|...+-+.|+.++|.+.+..+. ..+.+|...........+.+
T Consensus 462 l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA---PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HhhHHHHHHHHHHHHhcC---CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999864 3466667778888899999999999998854 23445666677777888888
Q ss_pred cCCHhHH
Q 011919 461 SGDEELI 467 (475)
Q Consensus 461 ~g~~~~a 467 (475)
.|+.++-
T Consensus 539 ~gk~E~f 545 (895)
T KOG2076|consen 539 VGKREEF 545 (895)
T ss_pred hhhHHHH
Confidence 8887763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-13 Score=124.46 Aligned_cols=285 Identities=11% Similarity=0.026 Sum_probs=222.1
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHH--HHHHHHHhcCChhHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN--NVIRLFCEKGDMIAAD 184 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~ 184 (475)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888755543222 222333344558899999999999999874 35554333 3367888999999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 011919 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 567788899999999999999999999999998755322 23334444445556677777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+...
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777553 2457778888999999999999999999998874 445422 233444566999999999999988764
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
. |...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3 6677889999999999999999999999976 799999999999999999999999999987653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=136.41 Aligned_cols=257 Identities=18% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-cc
Confidence 3455555666666666664433322 12233444444445555666666666666665532 1233344445544 45
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.+++++|.++++...+.. ++...+...+..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665544332 344445556666666666666666666655432 22345556666666667777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 363 LFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 363 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.+++..+. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..++...|++++|+.++++..+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77766654 343 4555666666666677776666666666543 12445566666677777777777777777666
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.. +.|+.+...+..++...|+.++|.++.+.
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT--------------
T ss_pred cc-ccccccccccccccccccccccccccccc
Confidence 55 56666666777777777777777666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=134.84 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
..+..+|...|+.++|...|++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccccccc
Confidence 333334444444444444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-12 Score=120.76 Aligned_cols=291 Identities=10% Similarity=0.007 Sum_probs=194.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHH-hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH--hhHHHHHHHHHhcCChh
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVK-MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT--IIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~ 181 (475)
...|+++.|.+.+....+.. |+.. .+-....+..+.|+++.|.+.+++..+.. |+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998876653 4433 33344567888999999999999987643 443 33444578888999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-HHHHH---HHhcCChHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS-ALLDG---ICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~---~~~~g~~~~a~~~~ 257 (475)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++. +...+. .-..+ ....+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998876 556778889999999999999999999999998754 333332 11111 12233333333344
Q ss_pred HHHHhcCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 258 GEMEKEGG-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT--I-STLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~-~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
..+.+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 44443210 012367778888888888999999999988888753 33321 1 111112233466677777777766
Q ss_pred hCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 334 AGGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 334 ~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54322 33 445567777777777777777777433333367777777777777777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-11 Score=118.58 Aligned_cols=324 Identities=15% Similarity=0.046 Sum_probs=252.3
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.++ .|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.
T Consensus 149 lfa-rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFA-RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHH-hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 344 499999999999998875 4678899999999999999999998876554433 5677889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-cHH----HHHHHHHHHHhcCCHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP-NVV----TYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~----~~~~li~~~~~~g~~~~a~~ 292 (475)
|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++.+.. +| |.. .-..+++.+...++.+.|.+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999875 4466666667788999999999999999999852 22 221 22334666777888899999
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhH
Q 011919 293 ILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------------------------SVSSGGCY 344 (475)
Q Consensus 293 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 344 (475)
.++..... +-..+...++.++..+.+...++.|......+.... ..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99887652 334456678899999999999999998887776621 11222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
.+.-++...+..+...-+.....+..+.| +...|.-+..+|...|++.+|..++..+....... +...|-.+..+
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c 458 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARC 458 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHH
Confidence 23334445555555555555555555333 45678889999999999999999999999875432 67789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|...|.+++|++.+++.+... |.+...--.+...+.+.|+.|+|.+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999887 7777788889999999999999988764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-12 Score=106.67 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=201.2
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh------hHHHHHHHHHhcCCh
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI------IYNNVIRLFCEKGDM 180 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~ 180 (475)
.+++++|.++|-+|.+.. +-+.++.-+|.+.|.+.|..++|+.+.+.+.+. ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 477888999988888843 555666667888999999999999999988773 4422 344566678888999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+.|.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999888755 44566777888899999999999999888888764433 23456666666677888888888
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+.+..+.+ +..+.+--.+.+.+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888753 233334445566778888888888888888887655556677778888888888888888888887754
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 011919 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 405 (475)
..++. -..+-+......-.+.|...+.+-+.. +|+...+..+|..-.. -|...+....++.|...
T Consensus 280 ~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 43332 333333333444455565555555544 6888888877775432 23455555566666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=106.82 Aligned_cols=281 Identities=12% Similarity=0.063 Sum_probs=133.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
.|++..|+++..+-.+.+ +-....|..-..+--..||.+.+-.++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555444433 1222233333444444555555555555554442233444444444555555555555555
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~ 329 (475)
++++.+.+ +...........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55554432 334444555555555555555555555555555443332 23444444444444444433344
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
+..... ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++...-.+..++-.+..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h--- 324 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH--- 324 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC---
Confidence 433221 112233344455555555666666666555555544333 1111 12344455555444444444332
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.+...+.+|...|.+.+.|.+|.+.|+..++.+ |+..++..+..++.+.|+.+.|.++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHH
Confidence 1233555555555666666666666665444443 55556666666666666655555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-11 Score=108.63 Aligned_cols=379 Identities=13% Similarity=0.040 Sum_probs=219.4
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh----HHHHHHHHHHcCCHHHHH
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM----MKVIFNLCEKARLANEAM 149 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~ 149 (475)
...|+..+....+...|+....+--.+-.++.+.+.+..|++.++.....-...+-.+ .+.+--.+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 3455555555555555544433333334455666778888888877665432233333 333333677889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------------hhHHHHH-----------
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------------ITYVSMI----------- 206 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~~~li----------- 206 (475)
.-|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|......||. ...+..|
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999887764 467665444555556678888888888887653222221 1111111
Q ss_pred ----------------------------------------------------HHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011919 207 ----------------------------------------------------KGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 207 ----------------------------------------------------~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
.-+.+.|+++.|.++++-+.+..-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 1133556666666666555443211111
Q ss_pred HHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 235 VAYSALL------------------------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 235 ~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..-+.|- +.....|++++|.+.|++...... .-+...-.+.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfnig 531 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIG 531 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhc
Confidence 1111000 001123556666666666655211 1111111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
-.+-..|+.++|++.|-.+... +..+......+.+.|....+...|++++.+.... ++.|+.....|...|-+.|+-.
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence 2344556666666666555432 1224455555666666666666777666554332 2335667777778888888877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 437 (475)
.|.+.+-+--.. ++-+..+...|..-|....-.++++.+|++..-. .| +..-|..++..|. +.|+++.|+++++
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 777765443322 3445677777777777777788888888876553 33 7788888876655 5799999999988
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011919 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+...+ +|-+...+..+++.+...|-.+
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchh
Confidence 87654 4788888888888887777543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-11 Score=103.96 Aligned_cols=301 Identities=14% Similarity=0.087 Sum_probs=214.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------hHHHH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------TYVSM 205 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l 205 (475)
|-.=++.+. .++.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|..++|+.+.+.+.+ .||.. ....|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHH
Confidence 333344444 455789999999998743 33555667788889999999999999998876 34432 34456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHHHHHH
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSVIQIF 281 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~~ 281 (475)
..-|...|-+|.|+.+|..+.+.| ..-......|+..|-+..+|++|+++-+++.+.+. .+. ...|.-+...+
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHHH
Confidence 777888999999999999988865 23456778889999999999999999998887431 111 12244455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
....++++|..++.+..+.+.+ .+..--.+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6678899999999888876422 233334556778889999999999999999887666778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHH
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARF 438 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~ 438 (475)
.++..+.+....+ ..-..+..-.....-.+.|..++.+-.... |+...+..++..-.. .|...+-+-++++
T Consensus 270 ~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~----Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 270 NFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRK----PTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhC----CcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 9999888763333 333444443344455566666665555542 377778888777653 4567778888888
Q ss_pred HHHcCCCCC
Q 011919 439 MLKKRIWLQ 447 (475)
Q Consensus 439 m~~~~~~~~ 447 (475)
|+...+..+
T Consensus 344 mvge~l~~~ 352 (389)
T COG2956 344 MVGEQLRRK 352 (389)
T ss_pred HHHHHHhhc
Confidence 887655433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-10 Score=101.09 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=169.5
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.|++.+|.+++..-.+.+- -....|..-..+.-+.|+.+.|-..+.+.-+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777666552 233444445556666777777777777766642234555566666667777777777777
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++++.+.+ +-+........++|.+.|++.....++..|.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776655 455666677777777777777777777777777654333 3455555555555555555555555
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011919 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+. .. .-.+.+-++.+.-.+..+...+....
T Consensus 255 ~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 255 QPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred ccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 5442 1233444445555666666666666666666665554441 11 12234445555555555554433221
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..+..|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2345666666666666666666666655544 56666666666666666666666666665553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-10 Score=111.73 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..++|+++|.+.++.. +-|...-+-+...++..|++..|..+|....+... ....+|-.+..+|...|+|..|++
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHH
Confidence 34567888888877653 33555666666777888999999999999988753 245678889999999999999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 435 LARFMLKKR-IWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 435 ~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.|+...++- ...++.+...|.+++.+.|.+.++.+.+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 998887653 3567778889999999999988877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-12 Score=116.76 Aligned_cols=286 Identities=13% Similarity=0.062 Sum_probs=218.5
Q ss_pred CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 144 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
+.++|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999995553 34455777888999999999999999999987643 11356677776654422 222333
Q ss_pred H-HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 222 F-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 222 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3 2333332 4478899999999999999999999999999853 337889999998999999999999999887653
Q ss_pred CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 301 GCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 301 ~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
|...|+ -+.-.|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.|+|+++++++.....+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 455554 4556789999999999999999886644 5566677778888999999999999999876432 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
.--.-...+...++.++|+..++++++.- | .+..+|..+...|-+.|+.+.|+.-|--|.+...+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v--P-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV--P-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 33334455677899999999999999953 3 4788899999999999999999999988887764433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-09 Score=96.16 Aligned_cols=312 Identities=12% Similarity=0.069 Sum_probs=217.7
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCC
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~ 214 (475)
.++....+.+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+.+.- -|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 356666677888888888888887666666666666666778899999999998876411 255666665543222111
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+..+.+-.-.--+--+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1122111111001234577788888888889999999999988854 455677888888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
+...+-+ +.|-..|-.|-++|.-.+...-|+-.|++.....+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 8888764 457778888889999888888899889888775433 77889999999999999999999999888765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 450 (475)
+...+..|...+-+.++.++|.+.++...+. |...+....+---|..-+.+.+++++|..+....... .+...-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6678888888888889999998888877663 3222112222223555566788888888776655544 344444
Q ss_pred HHHHHHHHHh
Q 011919 451 VDKIVEHLKK 460 (475)
Q Consensus 451 ~~~l~~~~~~ 460 (475)
-+.+++.+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4555554444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-10 Score=101.15 Aligned_cols=326 Identities=11% Similarity=0.029 Sum_probs=217.2
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-- 203 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 203 (475)
..|...+-.....+.+.|....|.+.|...... -+..|...+....-..+.+.+..+.. +.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 444444444444677788888888888776642 22334444433322333333332222 1122211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
-+..++-.....+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+...=--.|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 2345566666788888888888888877676666667777778889999999999998853111135666766553 33
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
..+.. +.++.+-...--+.-+.|..++.+.|.-.++.++|...|+..++.+.. ....|+.+..-|....+...|.+-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 32221 222221111111233467778888888888888888888888887654 355688888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|+..++-+ +-|-..|-.|-++|.-.+...-|+-+|++..... | .|...|.+|..+|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888653 4467788888888888888888888888888753 3 478888888888888888888888888888877
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 444 IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...+..+.+.+.+.++.++|...
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 55777888888888888888877543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-09 Score=98.36 Aligned_cols=356 Identities=14% Similarity=0.011 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
+..-...+.+.+.++-+..++....+.- +-+...|.-....-...|..++-..+|++....- +-....|-.....+-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh
Confidence 3334445555555555555555554432 3344455444444445555566666666655432 2334444444455555
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
.|++..|..++.+..+.. +.+...|-..+..-.....++.|..+|.+.... .|+..+|..-+..---.+..++|.++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 566666666666655543 335556666666666666666666666665543 34555555545544555666666666
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+++..+.- +.-...|-.+.+.+-+.++.+.|.+.|..-.+. ++-.+..|..|...--+.|.+-+|..+++...-++
T Consensus 674 lEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 674 LEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 66666531 222334555555666666666666655544332 23334445555555555566666666666665555
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011919 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
+. +...|-..|+.-.+.|..+.|..+..+.++. ++-+...|..-|...-+.++-.... +.+++-. .|..+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~---DALkkce----~dphVl 820 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI---DALKKCE----HDPHVL 820 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH---HHHHhcc----CCchhH
Confidence 43 4555666666666666666666666555543 1222333444343333333322221 1122211 144556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
-.+...+....+++.|.+.|.+..+.+ +..-.+|.-+...+.+.|..+.-.+++
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666667777777777777777766 555566777777777777655544444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-10 Score=110.79 Aligned_cols=319 Identities=15% Similarity=0.026 Sum_probs=205.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcc----cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC---CCCCC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMP----EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI---DLYPD 198 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 198 (475)
+.|...|-.+..++-....+ .++..|.... ..+-.+.++..|.+.......|+++.|...|.+.... ...+|
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 34445554444444433322 2244444332 2233355566666666666666666666666655433 11122
Q ss_pred h------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 199 I------ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 199 ~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
. .+--.+....-..++++.|.+.|..+.+.. |+ +..|-.+....-..+...+|...+....... ..+.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d---~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID---SSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc---cCCc
Confidence 2 112223344445556666666666666542 22 2233333333333456777777777776642 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCC
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVE------------GNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~ 338 (475)
..++.+...+.+...+..|.+-|+...+. ...+|......|-+.|... +..++|+++|.++++.++.
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56666666777777777777766655433 2234665555555544422 4578899999999987754
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
|..+-|.+.-+++..|++.+|..+|.+..+... -...+|-.+...|...|++..|+++|+...+... +..+..+...
T Consensus 645 -N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~ 721 (1018)
T KOG2002|consen 645 -NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHY 721 (1018)
T ss_pred -hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHH
Confidence 677788899999999999999999999988643 2445788899999999999999999999887755 3458899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
|.+++.+.|++.+|.+.+...+...+......||.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 99999999999999999988888764333334443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-12 Score=119.72 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.|++.+|..++.+-...|+.+.|..++.+|.+.|+..+..-|..|+-+ .+....+..+.+-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 466677777777777777777777777777777766666655555544 56666666666777777777777777666
Q ss_pred HHHHHhcCC
Q 011919 383 IRELCLGGQ 391 (475)
Q Consensus 383 i~~~~~~g~ 391 (475)
+..+..+|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-12 Score=116.32 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=214.6
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+..+|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.= ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 567899999985543 23445667788899999999999999999998753 1236678887775544321 2222
Q ss_pred H-HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 257 L-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
+ +.+.... +-.+.+|-++..+|.-.++++.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 2333321 456789999999999999999999999999875 44 678888888888888999999999999877
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011919 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+.. +-.+|..+...|.+.++++.|+-.|++..+- .| +.+....+...+.+.|+.++|++++++......+ |+
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~ 557 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NP 557 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---Cc
Confidence 5543 3455667788899999999999999999865 44 4566677777889999999999999999987643 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..--..+..+...+++++|+..++++...- |.+..++..+...|.+.|+.+.|..-.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 444455667778999999999999998775 778888999999999999999886543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-09 Score=95.97 Aligned_cols=341 Identities=9% Similarity=0.046 Sum_probs=237.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--
Q 011919 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEA----YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-- 162 (475)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-- 162 (475)
..+.+...+-...+.-.++|+.+.+..+++. +...|+..+...|-.=...|-..|..-.+..+....+..|+.-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3445566666666666667777766666544 4456777777777766667777777777777777766655432
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
-..+|+.-...|.+.+.++-|..+|....+.- +.+...|......--..|..++...+|++.... ++-....|-....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 23467777777777777777777777766543 445666666666666677788888888877765 2335556666667
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
-+-..|+...|..++..+.+.. +-+...|-..+........+++|..+|.+.... .|+...|..-+..-.-.++.
T Consensus 593 e~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7777888888888888887743 346677777788888888888888888877663 56777777766666777888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
++|.+++++.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. .|+ ...|-.|...=-+.|++..|+.+++.
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8888888887775322 2355777777788888888888887765543 344 34455555544566788888888888
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..-++ +.+...|-..|+.-.+.|+.+.|..+..++++.
T Consensus 745 arlkN---Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 745 ARLKN---PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhcC---CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77765 346778888888888888888888777666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=105.91 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
|.+--+.+.++|.+.|.+.+|.+.++...++ .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.|+....-.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 4444466777888888888888888777664 366677777778888888888888888777664 23333333455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
.+.+...++.++|.++++...+.... ++....++...|.-.++++-|+.+|+++++.|+. +...|+.+--+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 66677777888888888887775532 5566666777777778888888888888877764 566677776677777888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.++.-|.+....-..|..-..+|..+.......|++..|.+.|+-.+..+ +.+...++.+.-.-.+.|+.+.|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 888877777776654444456677777777777888888888888777776 5666777777777778888888877765
Q ss_pred cC
Q 011919 473 IG 474 (475)
Q Consensus 473 ~a 474 (475)
.|
T Consensus 454 ~A 455 (478)
T KOG1129|consen 454 AA 455 (478)
T ss_pred Hh
Confidence 43
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-08 Score=92.16 Aligned_cols=387 Identities=11% Similarity=0.036 Sum_probs=240.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
+.+.++|..+|..+.... ..+..++-..++.-.+.++.+.|..+++.....-...|.. |-..+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 445566666666654332 2344455555666666677777777777765543222222 2223333344567777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-G 229 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 229 (475)
+|++-.+- .|+...|++.|..=.+-+.++.|..+++...-. .|+..+|--..+.=.+.|+...|.++|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 77766553 577777777777777777777777777776542 477777777766666777777777777665542 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------------------------------------CCC
Q 011919 230 C-AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----------------------------------------GDC 267 (475)
Q Consensus 230 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------------------------------------~~~ 267 (475)
- ..+...+.+....=.++..++.|.-+|.-....- ..-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 0111222222222222333333333333222210 011
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGF---CVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~ 337 (475)
+.|-.+|--.+..--..|+.+...++|++.... ++|-. ..|-.+=-++ ....+.+.+.++|+..++ +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 345556666666667778888888888887765 34421 1121111111 245678888888888777 3
Q ss_pred CC-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 338 VS-SGGCYSSL----VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 338 ~~-~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
.| ...||..+ ...-.++.++..|.+++...+ |..|...+|...|..=.+.++++.++.++++..+.+ |.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHh
Confidence 33 33344433 333446678888888888877 778888888888888888899999999999999876 347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+|......-...|+.+.|..+|.-+++... ......|...++.-...|.++.|..+.+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 78888887777788999999999988887653 2334456777777788888888876653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=117.44 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=165.0
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011919 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 194 (475)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45555666677777777777777777777766665 6666666555566666677666666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
.|...||..|..+|...||+.. |+...+ -.-.+...+...|.-.....++..+.-. .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHH--
Confidence 4666677777777777776554 222221 1222333444555555555555443322 12233432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+....-.|-++.+++++..+..... .|..+ +++-+.... ....++.+......-.|+..+|..++.+-..
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 233444556667777777766543211 11111 233333322 2223333333222125777888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011919 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
.|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.| +..|+...+..+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchh
Confidence 88888888888888888888777777777654 777778888888888888876 77888877777776554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-10 Score=99.37 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444455555555444443322 2233444444444445555555555555444432 123334444444555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
..|++++|.+.+++..... ..+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555544321 011122334444445555555555555555544432 11233444455555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554431 2233334444455555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-10 Score=98.30 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=117.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4455556666666666666666666665543 2245556666666666666666666666666532 23445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
..+...|++++|.+.+++....... .....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 6666666666666666666543211 12334455555666666666666666666654322 344555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++|.+.+++..+. ...+...+..+...+...|+.++|..+++.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666554 123344445555555666666666666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=108.11 Aligned_cols=251 Identities=13% Similarity=0.001 Sum_probs=139.9
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+.++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3456777777666543 223344444443332 2234667777777777654 2256666666667777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 329 (475)
+++|...|+++.+.+ |.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 777777777777643 334556666677777777777777777777665322 1222223333455567777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
++..+....-+...+..+..++...|+.++|...+.++... .|+... .+.+...|...| +.|...++.+.+..-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77665432223344555666677777777777777766543 333332 333334445555 3666656655543211
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
-+.+. .+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 506 ~~~~~-~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNP-GL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCc-hH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11111 11 33334445666655555 6665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.8e-10 Score=108.70 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=190.3
Q ss_pred ccCHHhHHHHHHHHHH-----cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHhc
Q 011919 126 VVSVKMMKVIFNLCEK-----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE---------KGDMIAADELMKGMG 191 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 191 (475)
+.+...|...+.+-.. .+.+++|...|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3456666666664321 234679999999998764 2245566666555442 245789999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+.+ +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |.+.
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCh
Confidence 765 5577888888888999999999999999999875 3357788889999999999999999999999853 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...++++...... +....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 3334445567778999999999999876532224555677788888999999999999987655322 344456666677
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 352 VRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...| ++|...++.+.+. ...+....+..+ .+.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4788777777652 223332333333 34556777766655 7777754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=81.27 Aligned_cols=50 Identities=38% Similarity=0.759 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-12 Score=80.85 Aligned_cols=49 Identities=43% Similarity=0.983 Sum_probs=28.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-09 Score=96.07 Aligned_cols=279 Identities=17% Similarity=0.115 Sum_probs=203.5
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH-Hh-cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF-CE-KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
-+.++|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|..+-+.....+ +-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4677899999999988877643332222233332222 22 346777777777665432 22333333333344467999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.+.|++.....-.-....|| +.-.+-..|++++|++.|-++..- +.-++.+.-.+...|-...+...|++++.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999998763222222233 334577889999999999877542 23567777888899999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+.... ++.|+.....|...|-+.|+-..|.+.+-+--+ .++.+..+..-|...|....-+++++..|++.. -++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 76654 566788899999999999999999887655433 244477888888899999999999999999876 45899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011919 376 GLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 376 ~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
..-|..++..| .+.|++.+|..+++.+.++- +.|..+...|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHHhccccc
Confidence 99999988766 56899999999999999874 3488888889888887774
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-09 Score=100.94 Aligned_cols=245 Identities=20% Similarity=0.177 Sum_probs=178.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----
Q 011919 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-----GC-AANLVA-YSALLDGICRLGSMERALELLGEMEKE----- 263 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 263 (475)
+.-..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333456667889999999999999999887654 21 223332 344777888999999999999988652
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011919 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----GC-APNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAG- 335 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 335 (475)
|...+.-..+++.|..+|++.|++++|...++...+- |. .|.. ..++.+...++..+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2222233456778888999999999988887765421 11 1222 23566777888999999999998876542
Q ss_pred --CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 336 --GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----G-VKP-DGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 336 --~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
-+.+ -..+++.|...|...|++++|.+++++.+.. | ..+ ....++.|..+|.+.++.++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1111 2467999999999999999999999988742 1 112 2456788888999999999999998876
Q ss_pred HH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 403 EK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 403 ~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
.. .|...+....+|..|...|-+.|++++|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 54 344333345789999999999999999999988776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-08 Score=91.30 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=147.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011919 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|+.-.|..-|+..++....+ ...|--+..+|....+.++..+.|......+ +-+..+|..-.+.+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHH
Confidence 455556666666665543222 2225556667777777788888887777643 345566666666677777788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
.=|++..... +-+...|..+..+..+.+++++++..|++.+++-+ ..+..|+.....+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8887777643 22455666666666777888888888888877543 34667888888888888888888888887754
Q ss_pred CCCC-------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 372 VKPD-------GLA--CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 372 ~~p~-------~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|+ ... -..++.. --.+++..|.+++++..+... .....|..|...-.+.|+.++|+++|++....
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp---kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP---KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 111 1122211 123788888888888888642 24567888888888888888888888877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-10 Score=95.47 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=179.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHH
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY-TSVIQIF 281 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~ 281 (475)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-+.|.+..+...|+.++.+-.+. .|..+|| .-+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 56778888889999998888887776 566778888888899999999999888887764 3444444 4566777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
-..++.++|.++++...+.. +.++.....+...|...++.+-|+..++.+++.|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88888899999998887653 335566666677788888999999999999988876 5677888888888888999888
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 362 KLFSKMLASGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
--|.+....--.|+. ..|-.+-......|++..|.+.|+-....+ +.+...++.|...-.+.|++++|..++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 888887764434443 455556666677899999999998888765 336788999888888999999999999888
Q ss_pred HHcC
Q 011919 440 LKKR 443 (475)
Q Consensus 440 ~~~~ 443 (475)
.+..
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 7654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-07 Score=84.48 Aligned_cols=363 Identities=10% Similarity=0.013 Sum_probs=246.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhc
Q 011919 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEK 177 (475)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~ 177 (475)
.....-...++...|..+++...... .-+...|-.-+.+=.++..++.|..+|++.+.. -|-+ ..|--.+.+=-..
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 33344455677888999999988765 567777877888888999999999999998874 2332 3444455555567
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|.++|+...+. .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|-.....=.++|....|..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998754 799999999999999999999999999998875 589999999999999999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------------------------------ 301 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------------------ 301 (475)
....+.-.+-..+...+.+....-.+...++.|.-+|+-..+.=
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 98876311001112223333222223334444444444333220
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHH--------HHHHhcCCHHHHHHHHH
Q 011919 302 -------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLV--------VELVRTKRLKEAEKLFS 365 (475)
Q Consensus 302 -------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~a~~~~~ 365 (475)
-+-|-.+|--.++.-...|+.+...++|+..+..-.+... ..|...| -.-....+++.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1223344455555556667777777777777664322111 1111111 11123567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 366 KMLASGVKPDGLACSVMIREL----CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
..++. ++....||..+--.| .++.++..|++++...... .| ...+|...|..-.+.++++...+++++.+.
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cP--K~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CP--KDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CC--chhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77762 333345555443333 3556777788777776654 33 557788888888888888888888888888
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011919 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~a 474 (475)
.+ |-+-.+|......-...|+.+.|..+..+|
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88 677778888888888888888887776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-08 Score=94.71 Aligned_cols=260 Identities=15% Similarity=0.093 Sum_probs=125.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK---- 177 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 177 (475)
.++...|+++.|++.++.-... +......+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3455567777777776553322 22223334444556667777777777777776654 12333333344433211
Q ss_pred -CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 178 -GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE-DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+.+...++++++...- |.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 23455566666664432 33333333322222222222 3444555556666442 44445445554444444444
Q ss_pred HHHHHHhcC----C--------CCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011919 256 LLGEMEKEG----G--------DCSPNVVTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEG 320 (475)
Q Consensus 256 ~~~~~~~~~----~--------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 320 (475)
++......- . .-+|+...| ..+...|...|++++|++++++..+. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 444443210 0 012333222 33344555555555555555555554 233 444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
++.+|.+.++.....+.. |...-+..+..+.++|++++|.+++....+.+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555555554433 44444444555555555555555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-08 Score=95.81 Aligned_cols=283 Identities=17% Similarity=0.122 Sum_probs=158.5
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhc----
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRL---- 247 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~---- 247 (475)
.+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+++.+ |+-. -|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 34556666666666655432 222223334455566666666666666666666653 3333 333333333111
Q ss_pred -CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 248 -GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 248 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
.+.+...++++++.... |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 24556666666665531 3332222222222221122 23444555566666543 455555555555555555
Q ss_pred HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011919 326 YQLIDKVVAG----G----------SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCL 388 (475)
Q Consensus 326 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 388 (475)
.+++...... + -.|+. .++.-+...|...|++++|++++++.++. .|+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555554322 1 12222 34455667777788888888888877765 455 4566666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHHh
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--------DKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~ 460 (475)
.|++++|.+.++..+.... .|...=+..+..+.++|+.++|.+++......+..|..... .....+|.+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877653 25555566666777888888888887777666643332211 355667777
Q ss_pred cCCHhHHhhc
Q 011919 461 SGDEELITNL 470 (475)
Q Consensus 461 ~g~~~~a~~l 470 (475)
.|++..|.+.
T Consensus 318 ~~~~~~ALk~ 327 (517)
T PF12569_consen 318 QGDYGLALKR 327 (517)
T ss_pred HhhHHHHHHH
Confidence 7777777553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-07 Score=86.86 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
-.++..+-+.|+++.|..+++...++- |+ -+..|..-.+.+...|.+++|..++++..+.. .+|...-........
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345566667777777777777777652 21 34455555566777777777777777777665 455554446666666
Q ss_pred hcCCHhHHhhcc
Q 011919 460 KSGDEELITNLP 471 (475)
Q Consensus 460 ~~g~~~~a~~l~ 471 (475)
+..+.++|.+++
T Consensus 451 rAn~i~eA~~~~ 462 (700)
T KOG1156|consen 451 RANEIEEAEEVL 462 (700)
T ss_pred HccccHHHHHHH
Confidence 667777766654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=96.25 Aligned_cols=243 Identities=16% Similarity=0.096 Sum_probs=177.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKE---GGD-CSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEAL---- 300 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~---- 300 (475)
.+--..+...+...|...|+++.|..+++...+. ..| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334456677999999999999999999988763 111 1244333 344777889999999999999998642
Q ss_pred -C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 301 -G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-----GSV-SS-GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 301 -~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
| ..| -..+++.|..+|.+.|++++|...++...+- +.. |. ...++.+...++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 112 2346777788899999999998888776531 111 11 234677788899999999999999877642
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 371 ---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 371 ---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
-..++ ..+++.|...|...|++++|.++++++.... .. .......++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 3678899999999999999999999887641 11 111245678889999999999999999887
Q ss_pred HHHc----CC--CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 439 MLKK----RI--WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 439 m~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
...- |. +....+|..|...|...|+++.|.++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6642 32 2333578899999999999999998763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-08 Score=87.14 Aligned_cols=360 Identities=13% Similarity=0.007 Sum_probs=239.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcC
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKG 178 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 178 (475)
...+-+.++++.|++.+...... .|+ +..|.....+|...|+|+++.+.-.+..+. .|+ +..+..-.+++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 34566788999999999998775 566 677777888899999999999888888774 344 345666677888889
Q ss_pred ChhHHHHHHH------Hh-------------------------ccCC--CCCChhhHHHHHHHHHh---------c--CC
Q 011919 179 DMIAADELMK------GM-------------------------GLID--LYPDIITYVSMIKGFCN---------A--GR 214 (475)
Q Consensus 179 ~~~~a~~~~~------~~-------------------------~~~~--~~~~~~~~~~li~~~~~---------~--~~ 214 (475)
++++|+.=+. .. .+.+ +-|+....++....+.. . ++
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 9888765321 11 1011 12333333333322211 0 00
Q ss_pred --HHHHHHHHHHHHHCCC----------------Cc-----C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011919 215 --LEDACGLFKVMKRHGC----------------AA-----N------LVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 215 --~~~a~~~~~~m~~~g~----------------~~-----~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
..++.+.+..-...|. .+ | ..+...-...+.-.|+.-.|..-|+......
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~- 356 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD- 356 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-
Confidence 1122221111111110 01 1 1111111122344688888999999888742
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011919 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+.+...|--+...|....+.++..+.|++..+.+ +-|+.+|..-.+.+.-.+++++|..=|++.+..+.. +...|-
T Consensus 357 --~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~i 432 (606)
T KOG0547|consen 357 --PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYI 432 (606)
T ss_pred --cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHH
Confidence 2223337677778999999999999999988765 335667777777777888999999999999886543 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCCchhhHHHHH
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL-----SSVDSDIHSVLL 420 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~li 420 (475)
.+.-+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...+.... ..+...+.-.++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 6666667889999999999999876 3334678898999999999999999999998875321 001111222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..- -.+++..|.+++++.++.. |-....+..+.+...+.|+.++|.++..
T Consensus 512 ~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 512 VLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 222 3489999999999999887 5556678899999999999999987653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-06 Score=82.02 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C-
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCA----------P- 304 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p- 304 (475)
|..+.+.|-..|+++.|..+|++..+-..+...+ ..+|......-.++.+++.|+++++......-. |
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 4556667777788888888888777632110001 234555555555667777777776665422101 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 011919 305 ------NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-L 377 (475)
Q Consensus 305 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~ 377 (475)
+...|...++.--..|-++....+++.+++..+..... .-.....+..+.-++++.++|++-+..=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 11223344444445566666666676666654432111 111111223334445555555543332122332 2
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCL---GGQVLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~---~g~~~~a~~~~~~~~~ 404 (475)
.|+..+.-+.+ ...++.|+.+|++..+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 33333332221 2245666666666665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-07 Score=78.61 Aligned_cols=321 Identities=12% Similarity=0.035 Sum_probs=224.1
Q ss_pred hcCCccCHHhHHHHHHHHHHc--CCHHHHHHHHHhccc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 011919 122 EEGCVVSVKMMKVIFNLCEKA--RLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 122 ~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 198 (475)
....+|...+...-+.+++.. ++-..|.+.+-.+.. .-++-|+.....+...+...|+.++|...|++....+ +-+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~ 265 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDN 265 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhh
Confidence 334455555555555554443 333344444333322 2345677888999999999999999999999987543 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
........-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+-++..+.. +.+...|-.-.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG 341 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKG 341 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhcc
Confidence 3334444455667888888888888776542 1244445555556667789999999999988753 34556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-hcCC
Q 011919 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV-VELV-RTKR 356 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~ 356 (475)
..+...+++++|.-.|+...... +-+...|.-|+..|...|++.+|.-+-+...+.- ..+..+...+. ..+. .-.-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchh
Confidence 77889999999999999887642 3467899999999999999999987776655431 11333333331 2222 2223
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-++|.+++++..+. .|+- ...+.+...|...|..+.+..+++...... +|....+.|.+.+...+.+++|++.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccHHHHHHHHHHHHhhhHHHHHHH
Confidence 47899999887754 6763 456666777888999999999999988753 3888999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 011919 436 ARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|...+..+ |.+..+..-+-.
T Consensus 494 y~~ALr~d-P~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 494 YYKALRQD-PKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhcC-ccchHHHHHHHH
Confidence 99999887 566666555433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-08 Score=89.17 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=185.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
..+......-.+.+-...++....++.+...+.. ++....+..=|..+...|+..+-..+=.++.+.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3445555555566666777777777777776654 6666666666667777777666666656666542 4456677777
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g 248 (475)
..-|.-.|+..+|.+.|.+....+ +.=...|-.+...|+-.|..|.|...+....+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777788888888887765432 223456777777777778888877777665542 211 11122 333466777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----G--CAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~ 322 (475)
.++.|.++|.+.... .|.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|-.+|.+.+.+
T Consensus 395 n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 788888888777763 2556677777766666777788888877765521 0 011234567777777888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
++|+..++..+..... +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 8888888877765543 56777777777777888888888887776 457776666666553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-08 Score=88.65 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=217.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++.- +-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445556777889999999999988765 6777778888889999999888888888888763 446788999998
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 320 (475)
-|.-.|+.++|.+.|.+....+. .=...|-.+...|.-.|..|+|+..+...-+. |.. -+..| +---|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 89999999999999999877432 23457888999999999999999988776543 221 11222 233577889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GV---K-PDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~-p~~~~~~~li~~~~~~g~~~~ 394 (475)
+++.|.+.|.+.....+. |+...+-+.......+.+.+|..+|+..+.. .+ . --..+++.|-.+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999988765432 5667777777777889999999999887621 11 1 134568888899999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
|+..++...... +.+..+|..+...|...|+++.|++.|.+.+... |+-.+...++..+
T Consensus 474 AI~~~q~aL~l~---~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLS---PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcC---CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHHHHHHHHH
Confidence 999999999875 3488999999999999999999999999998665 5555555444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-07 Score=85.60 Aligned_cols=265 Identities=12% Similarity=-0.005 Sum_probs=127.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVS---MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
.+...|++++|.+.+++..... +.|...+.. +.......+..+.+.+.++.. ....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 3445566666666666655432 223323331 111111223333444443331 11111122333445556666677
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNR--VTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~ 326 (475)
+++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 130 ~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 130 YDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 777777776666642 33445556666666667777777776666554321 1221 23445566666777777777
Q ss_pred HHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 327 QLIDKVVAGGS-VSSGGCY-S--SLVVELVRTKRLKEAEKL--F-SKMLASGV-KPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 327 ~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
.++++...... .+..... + .++.-+...|..+.+.+. . ..-..... ............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 77777643322 1111111 1 222222233322222221 1 11111100 11111122455566778888888888
Q ss_pred HHHHHHcCCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 399 YEDIEKIGFL------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 399 ~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.+...... ........-....++...|++++|.+.+.+.+..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887763221 0001222233334455789999999998888765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-06 Score=79.71 Aligned_cols=381 Identities=10% Similarity=0.009 Sum_probs=208.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH--HH--HHHHcCCH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI--FN--LCEKARLA 145 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~--~~~~~~~~ 145 (475)
..++.+.|.+...-... .++.+...+.+-+-.+...++++.|+.+++.- + -..+++.. =. +..+.+..
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHHcccH
Confidence 56677777776655532 33556666766666777778888888666542 1 11222222 22 33467888
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC---------------------------C
Q 011919 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---------------------------D 198 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~ 198 (475)
++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+.+. .
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 999998883332 344466666778889999999999999996654211 0
Q ss_pred hhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCC-------CCcCHHHH--HHHH-----HHHHhcCChHHHHHHHHHHH
Q 011919 199 IITYVSMIK---GFCNAGRLEDACGLFKVMKRHG-------CAANLVAY--SALL-----DGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g-------~~~~~~~~--~~ll-----~~~~~~g~~~~a~~~~~~~~ 261 (475)
..+|..+.+ .++..|++.+|+++++...+.+ -.-+...- -..| ..+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 113333322 2344566777777666652211 00011111 1111 23445677777777766666
Q ss_pred hcCCCCCCcHHH----HHHHHHHHHhcCCHH-HHHHHHHHH---------------------------------------
Q 011919 262 KEGGDCSPNVVT----YTSVIQIFCGKGMMK-EALGILDRM--------------------------------------- 297 (475)
Q Consensus 262 ~~~~~~~~~~~~----~~~li~~~~~~g~~~-~a~~~~~~m--------------------------------------- 297 (475)
+.. ++|... -|.++..-....-.+ .++..++..
T Consensus 252 ~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred Hhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 643 233211 111111100000000 000000000
Q ss_pred --HHc-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-------
Q 011919 298 --EAL-GCAPNRVTISTLIKGFCV--EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS------- 365 (475)
Q Consensus 298 --~~~-~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------- 365 (475)
... +..| ...+.+++..+.+ ......+.+++...-+....-.....-.++......|+++.|.+++.
T Consensus 329 ~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 329 LSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 000 0111 1122233322221 12344555555555444333233455566777788899999999998
Q ss_pred -HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 366 -KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 366 -~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
...+.+..| .+...+...+.+.++-+.|..++++....-....+... ++..+...-.+.|+-++|..+++++.
T Consensus 408 ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 408 SSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 555444444 45556666677778777788888777653111111222 33333444457899999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 441 KKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
+.. ++|..+...++.+|++.. .+.|+.+
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 987 799999999999988764 4555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-07 Score=84.22 Aligned_cols=198 Identities=11% Similarity=-0.057 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345555555666666666666666666532 3345566666666666666666666666665532 113445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
++...|++++|.+.|+...+.+... . ........+...++.++|.+.+.+..... .|+...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~-~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND-P-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 6666666666666666666544321 1 11111112234456677777765544221 2222111 11 1223444433
Q ss_pred HHHHHHHHHHcCCC----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 395 GFCLYEDIEKIGFL----SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +.+..+.+..-. .+.....|..+...+.+.|++++|+..|++.++.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 233333321100 01134567777778888888888888888887776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-07 Score=85.88 Aligned_cols=195 Identities=17% Similarity=0.039 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...|++..+... -+..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345555556666666666666666665543 34456666666666666666666666666665431 1345556666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
...|++++|.+.|+...+.. |+..........+...++.++|...|++..... .|+... ..+ .....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~--~~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNI--VEFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHH--HHHHccCCCH
Confidence 66667777766666666532 222111122222334556666666665443221 222111 111 1222344333
Q ss_pred HHHHHHHHHhC---CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 325 AYQLIDKVVAG---GSV--S-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 325 a~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+ +.++.+.+. .+. | ....|..+...+.+.|++++|...|++..+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 233333221 110 0 1245666666677777777777777766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.6e-08 Score=78.32 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..|.-.|...|+...|.+-+++..+.. |.+..+|..+...|-+.|+.+.|.+.|++..+.. +-+....|..-..+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 344445555555555555555555532 2334445555555555555555555555544432 112333344444445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
..|++++|...|+.......-+ ...+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.+.....|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555544432111 123444444444455555555555555544321 11233334444444455555555
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
.+++.....+. + ...+.-..|+.--+.|+.+.+-++
T Consensus 194 ~~~~~~~~~~~-~--~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQRGG-A--QAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhccc-c--cHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555444432 1 333333444444444554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-07 Score=76.33 Aligned_cols=51 Identities=12% Similarity=-0.036 Sum_probs=19.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
+.....+.|++-.|..+++.....+. ++..+.-..|+.--..|+.+.+-++
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 33333344444444444443333322 3333333333333334444443333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-06 Score=78.93 Aligned_cols=375 Identities=11% Similarity=-0.015 Sum_probs=241.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-Hhh
Q 011919 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TII 166 (475)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 166 (475)
..+.-+...|..+.-.+.+.|+++.+.+.|++.... ..-..+.|+.+-..+...|.-..|+.+++.-......|+ ...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344557788888888888999999999999887663 344567777777788888888888888887654332243 333
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHhcc--CCC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 011919 167 YNNVIRLFC-EKGDMIAADELMKGMGL--IDL--YPDIITYVSMIKGFCNA-----------GRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 167 ~~~ll~~~~-~~g~~~~a~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~ 230 (475)
+-..-..|. +.|.+++++++-.+... .+. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 34667777766666544 111 12233444444444321 124567788888877553
Q ss_pred -CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC----
Q 011919 231 -AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAP---- 304 (475)
Q Consensus 231 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---- 304 (475)
.|++..| +.--|+-.++++.|++...+..+-+ -..+...|..+.-.+...+++.+|+.+.+...+ .|..-
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 3433333 4445777788999999999988852 246788888888888889999999998876543 32100
Q ss_pred --------------CHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHH--------hCC---
Q 011919 305 --------------NRVTISTLIKGFCVE-----------------------GNLDEAYQLIDKVV--------AGG--- 336 (475)
Q Consensus 305 --------------~~~~~~~li~~~~~~-----------------------g~~~~a~~~~~~~~--------~~~--- 336 (475)
-..|+..++..+-.. ++..++.+....+. ..+
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 011222222222100 00111111111100 000
Q ss_pred ------CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 337 ------SV--SS------GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 337 ------~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
.. |+ ...|......+.+.+..++|.-.+.+..+.. .-.+..|...-..+...|+.++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00 11 1234455666777788888887777776432 233455555556677889999999999888
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK--LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
...+ |.++.....+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|-+..+
T Consensus 711 l~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 711 LALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HhcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 8764 3477888999999999998888888 999999999 8999999999999999999998876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-06 Score=80.23 Aligned_cols=303 Identities=13% Similarity=0.016 Sum_probs=184.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDI-ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667677877777666665543221 1222 112223345667899999999999988763 334444442 2
Q ss_pred HHHH----hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011919 242 DGIC----RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP---ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2232 24555566665554211 112334445566678899999999999999998864 335667788888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 011919 318 VEGNLDEAYQLIDKVVAGGSV-SS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPDGLAC-S--VMIRELCLGG 390 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g 390 (475)
..|++++|...+++....... ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998875432 22 23456788889999999999999999864322 1112111 1 2233334444
Q ss_pred CHHHHHHHHHHHHHc---CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHH
Q 011919 391 QVLEGFCLYEDIEKI---GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--------LQGPYVDKIVEHLK 459 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~ 459 (475)
..+.+.+. +.+... ................++...|+.++|.++++.+...... ......-....++.
T Consensus 240 ~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 240 HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 43333332 222211 1000011122235667778899999999999998764322 11222233344667
Q ss_pred hcCCHhHHhhcccc
Q 011919 460 KSGDEELITNLPKI 473 (475)
Q Consensus 460 ~~g~~~~a~~l~~~ 473 (475)
..|+.+.|.+++..
T Consensus 319 ~~g~~~~A~~~L~~ 332 (355)
T cd05804 319 AEGNYATALELLGP 332 (355)
T ss_pred HcCCHHHHHHHHHH
Confidence 88999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-06 Score=75.81 Aligned_cols=271 Identities=11% Similarity=-0.017 Sum_probs=155.8
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
.+-++.....+...+...|+.++|+..|+...-.+ |+. .....-...+.+.|+.+....+...+.... .-+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34556666667777777777777777777665432 221 111222223445666666666666554322 12333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.-.......++++.|+.+-++.++... -+...|-.-...+...|+.++|.-.|+...... |-+...|.-++..|..
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHh
Confidence 444444556667777777776665431 244444444456666777777777777766532 3456677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLI-KGF-CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
.|.+.+|.-+-+..... ++.+..+.+.+- ..+ .....-++|.++++.-+...+. -....+.+...+...|+.+.++
T Consensus 381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence 77777776655443332 223444444331 122 2223345666776666554322 1234555666666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.++++.... .||...-+.|.+.+...+.+++|...|....+.+
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 777776644 6677777777777777777777777777666643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.7e-08 Score=85.40 Aligned_cols=222 Identities=12% Similarity=0.108 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIKGF 209 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~ 209 (475)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-+++.......++..++. .....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3334455555556544332 3332222 3444444444433333234444444444443332221222222 222334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----HhcC
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGKG 285 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 285 (475)
...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...+..++ .-.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHH-HHHHHHHHHHHHhCch
Confidence 4456666665555431 244455555556666666666666666665421 2222 12222222 2223
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL-KEAEKLF 364 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~ 364 (475)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455555555555433 3345555555555555555555555555555444322 333444444444444544 4444455
Q ss_pred HHHHH
Q 011919 365 SKMLA 369 (475)
Q Consensus 365 ~~m~~ 369 (475)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-07 Score=77.51 Aligned_cols=194 Identities=10% Similarity=0.012 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHH-HHHHHHh
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN-VIRLFCE 176 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 176 (475)
...+..+.+..++..+++++....++. +.+....+.+..+|....++..|.+.|+++... .|...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444555566777777776665553 335566666666777777777777777776553 244444432 2344556
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKG--FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.+.+..|+.+...|... |+...-..-+.+ ....+|+..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 67777777777666532 222211111222 224566666666666655332 4445555555566677777777
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
+-|+...+-+ |. -....|+..+.. .+.|+++.|++...++.+.|++
T Consensus 165 qkFqaAlqvs-Gy-qpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVS-GY-QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhc-CC-CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 7777766632 22 234456554433 3456677777777777766654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-06 Score=72.16 Aligned_cols=339 Identities=12% Similarity=0.021 Sum_probs=161.9
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
+.|+.++|...+..+.... .++.+.+..+.-.+.-.|.+.+|.++-.+..+ ++..-..|.....+.++-++...
T Consensus 69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHH
Confidence 4466666666666655533 34444444444444445566666666555433 33333444445555566555555
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcC
Q 011919 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL-DGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
+-+.+.. ...---+|.+.....-.+.+|.+++.+.... .|+....|..+ -+|.+..-++-+.++++-..++
T Consensus 143 fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 5544432 1111223333333334567888888887765 34555555433 4566777777778887777664
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCC-----HHHHHHHH
Q 011919 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC--------------------------APN-----RVTISTLI 313 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li 313 (475)
++.++...|.......+.=.-..|.+-.+.+.+.+- -|. +..-..|+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 244555566555544443222222222222222210 000 01112344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL--VRTK-------RLKEAEKLFSKMLASGVKPDG-LACSVMI 383 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g-------~~~~a~~~~~~m~~~~~~p~~-~~~~~li 383 (475)
-.|.+.+++.+|..+.+++ .|+.. |.-++.+. +..| ...-|.+.|+-.-+.+..-|. .--.++.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred eeecccccHHHHHHHHhhc-----CCCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4567778888888777654 23211 33333332 2222 233455555443333322221 1122233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..+.-..++++.+.+++.+...-.. .|.. --.+..+++..|++.+|.++|-......++.+......+.++|.+.|.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~N--dD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTN--DDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--cchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 3333344555555555555544221 1222 223455555666666666666554444433333334455555555555
Q ss_pred HhHHhh
Q 011919 464 EELITN 469 (475)
Q Consensus 464 ~~~a~~ 469 (475)
.+.|.+
T Consensus 444 P~lAW~ 449 (557)
T KOG3785|consen 444 PQLAWD 449 (557)
T ss_pred chHHHH
Confidence 555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-08 Score=85.97 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=158.5
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
.=.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33677888886555 322222234455666778888888876544 4444433 666666666655555445556666
Q ss_pred HHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 220 GLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 220 ~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.-+++....+..+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6555544433332 3333333445677789999999887542 345566677888999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 299 ALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .-
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 33444455555443 34688999999997664 45677888888889999999999999998887653 22
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 011919 375 DGLACSVMIRELCLGGQV-LEGFCLYEDIEKIG 406 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 406 (475)
+..++..++......|+. +.+.+++.++....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 456666677776777776 66778888888753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-05 Score=72.10 Aligned_cols=358 Identities=12% Similarity=0.078 Sum_probs=221.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..+..+.|+..+....+.. ..+..-|+.+.-..+..++.++|+..+......+ +-+...+.-+--.-++.|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3566777777776654422 2344455555555566678888888888877765 556666766666666777777777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHH
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMI------KGFCNAGRLEDACGLF 222 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~ 222 (475)
.......+.. +.....|.....++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777666542 2345567777777788888888888888776643 245555544322 2345567777777766
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH-HHHhcCCHHHHH-HHH------
Q 011919 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEAL-GIL------ 294 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~-~~~------ 294 (475)
..-... +.-....-..-...+.+.+++++|..++..+.... ||...|...+. ++.+..+.-++. .+|
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 654433 11122222344566778888888888888888753 66555554433 333232222222 333
Q ss_pred ----------------------------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC------
Q 011919 295 ----------------------------DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA----GG------ 336 (475)
Q Consensus 295 ----------------------------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~------ 336 (475)
..+.+.|+++ ++..+...|-.-...+-..++.-.+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 3333444332 223333333222222111111111111 11
Q ss_pred ----CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 337 ----SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 337 ----~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
-+|+. .++..++..|-..|+++.|...++....+ .|+. .-|..=.+.+..+|++++|..++++..+...
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-- 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-- 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--
Confidence 13333 45667888899999999999999999855 6764 3454555778999999999999999999763
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
+|...=..-..-..++++.++|.++.-...+.|.
T Consensus 437 -aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 -ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred -hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 2544444566677799999999999988888774
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-05 Score=72.31 Aligned_cols=359 Identities=10% Similarity=0.003 Sum_probs=181.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
-..+..+...++.......|+.... ..+.-....|...+....+.+-.+.+..+|++..+ .++..-+--|..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHh
Confidence 3344445555555555555555432 23333445666666666667777777777777765 233345566667777
Q ss_pred cCChhHHHHHHHHhccCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcC--HHHHHHHHHHHH
Q 011919 177 KGDMIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLE---DACGLFKVMKRHGCAAN--LVAYSALLDGIC 245 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~ 245 (475)
.+++++|-+.+....... .+.+...|..+-...++.-+.- ....+++.+... -+| ...|++|.+-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 777777777776664321 1233344555544444433322 222333333322 223 245677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC--
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------------MMKEALGILDRMEALG-- 301 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~~-- 301 (475)
+.|++++|..+|++..+. ..++.-|+.+.++|+.-. +++-.+.-|+.+....
T Consensus 260 r~g~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HhhhhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 777777777777777663 234444444444443211 1122222233322211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 302 ---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS------SGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 302 ---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
-+-++..|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-.+|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 011122222211 12235555556666665542 111 134566777777777777777777777
Q ss_pred HHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CCC-----CchhhHHHHHHHHHhcC
Q 011919 367 MLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGF----------LSS-----VDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 367 m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~-----~~~~~~~~li~~~~~~g 427 (475)
..+-.. +.. .+|..-...=.+..+++.|+++.+...-..- .|. .+...|..+++..-..|
T Consensus 413 a~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 413 ATKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred hhcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765432 121 2222222223345566666666655443110 000 02344555555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
-++....+++++++..+ .++.........+.....++++-++.
T Consensus 492 tfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred cHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777776664 33343333344444444455444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-05 Score=83.74 Aligned_cols=336 Identities=13% Similarity=-0.011 Sum_probs=204.2
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--C----CCCh--hhHHHHHHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--L----YPDI--ITYVSMIKGF 209 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~--~~~~~li~~~ 209 (475)
.....|++..+...++.+.......+..........+...|++++|...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777766432111223333344555667899999998888764321 0 1111 1122233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--cHHHHHHHHHHHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEGGDC-SP--NVVTYTSVIQIFC 282 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~ 282 (475)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++........ .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 244556667788999999999998876521100 11 1234455666788
Q ss_pred hcCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011919 283 GKGMMKEALGILDRMEA----LGCA--P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVS--SGGCYSSLVVEL 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 351 (475)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999999887654 2221 1 12334455566777899999999988875431 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchhhHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKMLAS--GVKPDGL--A-C-SVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-VDSDIHSVLLLGLC 424 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~--~~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 424 (475)
...|+.++|.+.+.+.... ....... . . ...+..+...|+.+.|.+.+........... .....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887542 1111110 1 0 1122344557899998888766544211100 01112446677788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 425 RKNHSVEAAKLARFMLKK----RIWL-QGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..|++++|...+++.... |... ...+...+..++.+.|+.++|.+.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999888764 3222 223566777888999999888776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-05 Score=84.83 Aligned_cols=308 Identities=13% Similarity=0.007 Sum_probs=196.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC----C--CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh----hhH
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEF----D--LRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI----ITY 202 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~----~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 202 (475)
....+...|++++|...++...+. + ..+. ......+...+...|+++.|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556788999999988876432 1 0111 112223334566789999999999987653111121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC---CCcHH
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC---SPNVV 272 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~ 272 (475)
+.+...+...|++++|...+++.... |- .....++..+...+...|++++|...+++..... .+. .....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778899999999999887653 11 1112345566778889999999999988765521 111 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChh--h-
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL--GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVSSGG--C- 343 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~- 343 (475)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|...++...... ...... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677789999999999887542 1112 23344456667788999999999998875421 111110 0
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhh
Q 011919 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDI 415 (475)
Q Consensus 344 -~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 415 (475)
....+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |... ....+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS-DLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH-HHHHH
Confidence 011224455688999999998776532111111 11345666788899999999999988764 2211 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..+..++.+.|+.++|.+.+.+.++..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677788889999999999999998765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-06 Score=80.15 Aligned_cols=351 Identities=15% Similarity=0.148 Sum_probs=207.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CccCHHhHHHHHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE-G--------CVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~li~~~~~ 141 (475)
.++-+.|++-.... .+...|..+.+.+.+.++.+.|.-.+..|... | ..++ ++=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34455555444333 35567888888888888777776666555321 1 1222 232334445567
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|.+++|+.+|.+.++ |..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 8899999999998876 344555666789999999987654322 1235666666666677888888888
Q ss_pred HHHHH----------HCC---------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 222 FKVMK----------RHG---------CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 222 ~~~m~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
|++.. ... -..|...|......+-..|+.+.|+.+|..... |-.++...|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C 949 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKC 949 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEe
Confidence 77522 111 012333444444555566777777777766554 455666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------
Q 011919 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV---------- 352 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------- 352 (475)
-.|+.++|-++-++- | |......|.+.|...|++.+|...|-+... +...|+.|-
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 778888887776542 2 555666777888888888888888766543 222222221
Q ss_pred ---hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCCchhhHHHH
Q 011919 353 ---RTK--RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE--------DIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 353 ---~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~l 419 (475)
-.| +.-.|-++|++. |.. ....+..|.++|.+.+|+++-- +++...+.|..|....+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111 222233333332 221 1223334667777777665422 2333445555577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----------HcCCC----------------CCh----hhHHHHHHHHHhcCCHhHHhh
Q 011919 420 LLGLCRKNHSVEAAKLARFML----------KKRIW----------------LQG----PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~----------~~~~~----------------~~~----~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.+.++...++++|..++-... .++++ |+. ..+..+.+.|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777777777777766543322 11221 111 356778889999999988876
Q ss_pred ccccCC
Q 011919 470 LPKIGG 475 (475)
Q Consensus 470 l~~~ag 475 (475)
-...||
T Consensus 1167 KfTQAG 1172 (1416)
T KOG3617|consen 1167 KFTQAG 1172 (1416)
T ss_pred HHhhhh
Confidence 555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-05 Score=76.36 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC--VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
+++..+....++...+-+.+.+++++...-.+- .-+...-|.||-...+.. ..+..+..+++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCc-hh------H
Confidence 444445555555555666666666655533221 112223333333333333 2344444444443321 11 2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+..++-+++|..+|++.. .+....+.||.- -+..+.|.+.-++.- .+.+|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 223344445555555555432 233333333331 233444443333221 345566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 328 (475)
.+|.+-|-+. .|+..|.-+++...+.|.+++-.+++...++..-.|... +.|+-+|++.+++.+.+++
T Consensus 1121 ~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 6666555332 244456666666666666666666666655554444433 3555666666665554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00011 Score=70.96 Aligned_cols=341 Identities=15% Similarity=0.068 Sum_probs=222.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHH-HcCCHHHHHHHHHhcccC--CC--CCCHhh
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCE-KARLANEAMWVLRKMPEF--DL--RPDTII 166 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~ 166 (475)
..+.|..+...+...+.-..|..+++........| +...+-..-..|. +.+.++++++.-.+.... +. ......
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 44555566556666777788888888765544334 3444433344454 346677777666655541 11 123445
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011919 167 YNNVIRLFCEK-----------GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 167 ~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..++++.|.+..++..+.+-.-+..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55555555432 12456788888886654 3333343444456777889999999999999986667899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME----------------- 298 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------- 298 (475)
.|..+.-.+...+++.+|+.+.+.....- +.|......-+..-...++.++++.....+.
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 99999999999999999999999877641 1111111111111112233333322221111
Q ss_pred ----------------------------------HcC---------C--CCC------HHHHHHHHHHHHhcCCHHHHHH
Q 011919 299 ----------------------------------ALG---------C--APN------RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 299 ----------------------------------~~~---------~--~p~------~~~~~~li~~~~~~g~~~~a~~ 327 (475)
..| + .|+ ...|......+.+.+..++|..
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 000 0 011 0112344456667788888887
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHH
Q 011919 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFC--LYEDIEK 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~~~~ 404 (475)
.+.+.....+. ....|......+...|..++|.+.|...... .|+ .....++...+.+.|+...|.. ++.++.+
T Consensus 672 CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 672 CLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 77777664432 4556777777788899999999999988854 555 4677888889999998887777 9999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+ +.+...|..+...+-+.|+.+.|.+.|+......
T Consensus 749 ~d---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 749 LD---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hC---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 77 3488999999999999999999999999988764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-06 Score=86.57 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=184.9
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 307 (475)
+-+...|-..|......++.++|.++++++... .++.- -...|.++++.-...|.-+...++|++..+.. . .-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 335677888899999999999999999999874 21111 12357777777777888888999999998863 1 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIR 384 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 384 (475)
.|..|...|.+.++.++|.++++.|.++-- -....|...+..+.++++-+.|..++.+.++. -|. .......++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 688899999999999999999999987633 45678999999999999999999999999875 344 233444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcC
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSG 462 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g 462 (475)
.-.+.|+.++++.+|+....... -....|+.+++.-.++|+.+.+..+|++.+..++.+.. ..|...++.-.+.|
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayP---KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYP---KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCc---cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 55788999999999999998753 35678999999999999999999999999999876654 36778888888888
Q ss_pred CHhHHhhcc
Q 011919 463 DEELITNLP 471 (475)
Q Consensus 463 ~~~~a~~l~ 471 (475)
+.+.++.+-
T Consensus 1686 de~~vE~VK 1694 (1710)
T KOG1070|consen 1686 DEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHH
Confidence 887776653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-05 Score=73.38 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=169.4
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH
Q 011919 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQS-SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 135 (475)
+|+.+.-..+.. ..+-+..-..++.....++ .|..+...-+.++ .-+..-+...+.+.++.+..-. .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi-LtAikad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI-LTAIKADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH-HHHhhcChHHHHHHHHHhccCC-chh------H
Confidence 555555555554 3344444455555554444 4444444444333 3344556677777777765543 333 3
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
...+...+-+++|..+|++.. .+....+.|+.- -+..++|.++-++.. ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 445666777888888888664 244455555543 356677777766543 345677777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
.+|.+-|-+. -|+..|..+++...+.|.+++-.+++.-..+... .|. .=+.+|-+|++.++..+..+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~--id~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPY--IDSELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Ccc--chHHHHHHHHHhchHHHHHHHh-
Confidence 7776655332 2666777778888888888887777766655321 232 3355777777777766655543
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
..||......+-+-|...|.++.|.-+|..... |..|...+...|++..|.+.-++. .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 246666666667777777777777766655422 666667777777777666655443 23
Q ss_pred HHHHHHHHHHHHhcCCHH
Q 011919 376 GLACSVMIRELCLGGQVL 393 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~ 393 (475)
..||..+-.+|...+.+.
T Consensus 1249 ~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hhHHHHHHHHHhchhhhh
Confidence 455655555555554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-06 Score=79.32 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=186.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.+.|++.+|.-.|+..++.. +-+...|..|...-...++-..|+..+.++.+.. +-+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHH
Confidence 457888999999999888875 3377888888888888899999999999998853 456777778888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCC
Q 011919 289 EALGILDRMEALGCAPNRVTISTLI-----------KGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.|++.++.-.....+ |..+. ..+.....+.+..++|-++. ..+..+|...+..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999887654211 10010 11122223445555555554 44545778888999989999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
+++|.+.|+.++.. +| |...||.|-..++...+.++|+.-|.+..+.. | --+.+...|..+|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P-~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--P-GYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--C-CeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999865 55 56889999999999999999999999999963 3 2467778888999999999999999
Q ss_pred HHHHHHcC---------CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 436 ARFMLKKR---------IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 436 ~~~m~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|-..+... ..++..+|..|-.++.-.++.|.+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87766431 112345788888888888887755443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-06 Score=70.83 Aligned_cols=328 Identities=12% Similarity=0.064 Sum_probs=226.4
Q ss_pred CCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
|+......+.+.+..+.+..+++.|++++..-.+.. +.+......|..+|-...++..|-+.++++... .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 444555567888888899999999999998877764 237788899999999999999999999999754 46666665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011919 204 SM-IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 204 ~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
.. ...+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++....+ +..+.+.....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gCl 153 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchhe
Confidence 43 45667888999999999888753 2222222222 23445788999999988876532 44455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------ 342 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------ 342 (475)
..+.|++++|.+-|+...+-+---....|+..+. ..+.|+.+.|++...+++++|+...+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 7799999999999998877543334567776664 456789999999999999998764211
Q ss_pred ----------hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 011919 343 ----------CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 343 ----------~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
.+|.=...+.+.|+++.|.+.+..|.-. .-..|+.|...+.-. --.+++.+..+-+.-+.+.+. .
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP---f 308 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP---F 308 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC---C
Confidence 1222233455778899998888888532 234566777655322 234567777777777776543 3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHH-hcCCHhHHh
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLK-KSGDEELIT 468 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~ 468 (475)
...+|..++..||++.-++.|-.++-+--..-.. .++..|+. ++++. -.-..+++.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAF 366 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHH
Confidence 4689999999999999999998887664433222 34444444 33333 333444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-05 Score=70.58 Aligned_cols=376 Identities=11% Similarity=0.033 Sum_probs=215.9
Q ss_pred hCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHHcCCHHH
Q 011919 69 CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANE 147 (475)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 147 (475)
|..++.+.|.+.|.-....+. ++...|+.=...+...++++.|.+=-...++. .|+ ...|.-...++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 457788888888877655443 47777877777888888888886655554443 454 4577777788888899999
Q ss_pred HHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHhccCC---CCCChhhHHHHHHHHHhc---------
Q 011919 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM---IAADELMKGMGLID---LYPDIITYVSMIKGFCNA--------- 212 (475)
Q Consensus 148 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~--------- 212 (475)
|+.-|.+-.+.. +.|...++-+..++.-.... -.--.++..+.... .......|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999888764 34666777777776211000 00000111110000 000111122222221110
Q ss_pred -CCHHHHHHHHHH-----HHHCC-------CCc----------------------CHHHHHHHHHHHHhcCChHHHHHHH
Q 011919 213 -GRLEDACGLFKV-----MKRHG-------CAA----------------------NLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 213 -~~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
..+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111111100 00000 011 0112345566666677777777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHH
Q 011919 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST-------LIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~a~~~~~ 330 (475)
...... .-+..-++....+|...|.+.+....-....+.|-. ...-|+. +-.+|.+.++++.+...|.
T Consensus 248 ~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 248 AKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777662 234444455556666666666555555544444321 1122222 2234555566777777776
Q ss_pred HHHhCCCCCChhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 331 KVVAGGSVSSGGC-------------------------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 331 ~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
+.+.....|+... ...=...+.+.|++..|++.|.++++.. +-|...|..-.-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 6554433332111 1111445677899999999999999875 4467889988889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
|.+.|.+..|++-.+...+.. +.....|.--..++.-..+|++|++.|++.++.. +.+......+.++..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 999999999998888888764 2345556655666666778999999999998877 444444445444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-05 Score=76.92 Aligned_cols=327 Identities=15% Similarity=0.108 Sum_probs=175.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhH
Q 011919 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167 (475)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 167 (475)
.+++.-...-...++.+...|+-+.|-++-+. +..+ -+.|..|.+.|....|...-..=.. +..|....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il 651 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEIL 651 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHH
Confidence 34443333334455666667777666554221 1122 2357788888887777665432211 23466677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------------HCCCC
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK----------------RHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----------------~~g~~ 231 (475)
..+..++.+..-+++|-++|+++.. |+ ..+.+|-+.+-+.+|.++-+-.. ..| +
T Consensus 652 ~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q 721 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-Q 721 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-h
Confidence 7777777777777777777776652 11 12222222222333333322110 000 0
Q ss_pred cCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 232 ANL--------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 232 ~~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
.|. ......+.+......|.+|+.+++.+..+. .-..-|..+.+.|...|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~----- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD----- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc-----
Confidence 000 011122344445566777777776665532 223345566667777777777777765421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011919 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 304 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 383 (475)
.++-.|..|.+.|+++.|.++-++.. |.......|-+-..-+-++|++.+|.++|-.. | .|+ ..|
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~ai 857 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAI 857 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHH
Confidence 24445667777777777777665542 33334445555555566667777776666443 2 333 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..|-+.|..+..+++.++-.... -..+...+..-|-..|+.++|.+-|-+. .-|...+..|..++-
T Consensus 858 qmydk~~~~ddmirlv~k~h~d~-----l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHGDH-----LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASEL 923 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhChhh-----hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhh
Confidence 55666666666665555433221 2345556666677777777777766544 234555666666677
Q ss_pred HhHHhhcccc
Q 011919 464 EELITNLPKI 473 (475)
Q Consensus 464 ~~~a~~l~~~ 473 (475)
++.|.++.+.
T Consensus 924 w~dayriakt 933 (1636)
T KOG3616|consen 924 WEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhc
Confidence 7777666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-06 Score=79.07 Aligned_cols=253 Identities=15% Similarity=0.061 Sum_probs=186.3
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
.-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678999999999999988776 6678899999999999999999999999999875 337788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVI---------QIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
+|++.++...... +|-. |...- ..+..........++|-++ ...+..+|......|--.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~---p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK---PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC---ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999886632 1100 00000 1111222234445555444 455545677777888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
+++|.+.|+..+...+. |..+||.|...++...+.++|+..|.+.++. +|+- +..-.|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999986543 7789999999999999999999999999965 7763 344455667899999999999888
Q ss_pred HHHHcCC-------CCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 401 DIEKIGF-------LSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 401 ~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
......- .|..+..+|..|=.++.-.++.|.+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 7664311 111123567776666666666664443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-08 Score=56.94 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=14.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011919 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 190 (475)
|++||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=57.00 Aligned_cols=28 Identities=36% Similarity=0.871 Sum_probs=10.6
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
.||..+|++||++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0003 Score=66.10 Aligned_cols=319 Identities=14% Similarity=0.139 Sum_probs=190.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-------------------
Q 011919 103 MSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP------------------- 162 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~------------------- 162 (475)
.+-+.+..+.|+..++ |..+ +..+...-...+.+.+++++|+++|+.+.+.+.+-
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 4456788899888887 3333 34466666678889999999999999997654211
Q ss_pred --------CHhhHHH---HHHHHHhcCChhHHHHHHHHhccC-------CCCCChhh-------HHHHHHHHHhcCCHHH
Q 011919 163 --------DTIIYNN---VIRLFCEKGDMIAADELMKGMGLI-------DLYPDIIT-------YVSMIKGFCNAGRLED 217 (475)
Q Consensus 163 --------~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~-------~~~li~~~~~~~~~~~ 217 (475)
...+|.. ....++..|++.+|+++++...+. +-.-+... --.+.-.+-..|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 0112222 233567789999999999988321 11111111 1124445667899999
Q ss_pred HHHHHHHHHHCCCCcCHHHH----HHHHHHHHhc---------------------------------------------C
Q 011919 218 ACGLFKVMKRHGCAANLVAY----SALLDGICRL---------------------------------------------G 248 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~----~~ll~~~~~~---------------------------------------------g 248 (475)
|.+++...++... +|.... |.|+..-... +
T Consensus 243 a~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988753 233221 2221111000 1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
..+.+.++.... .+..|.. .+.+++..+. +...+.++.+++...-+....-.....-..+......|+++.|.
T Consensus 322 k~~q~r~~~a~l----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASL----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhC----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 111111111111 1112332 2333333322 22346777777777665432222445556677788899999999
Q ss_pred HHHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCCH
Q 011919 327 QLID--------KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIR----ELCLGGQV 392 (475)
Q Consensus 327 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~----~~~~~g~~ 392 (475)
+++. .+.+.+..| .+...+...+.+.++.+.|..++.+..+. .-.+......+++. --.+.|+.
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 9999 555555555 34555667777777777777777776542 11222233333333 23467999
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
++|..+++++.+.. +.|..+...++.+|++. +++.|..+-+.
T Consensus 475 ~ea~s~leel~k~n---~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFN---PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999964 34888999999999865 45666665444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-05 Score=69.80 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=143.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
.++...+..+.|+.+.+.+.+.. +-+..+|+.--.++...| ++++++..++++.+.+. .+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 34455677788888888887764 445556665555566666 57899999988887653 4666777666666666653
Q ss_pred --hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CC----hH
Q 011919 181 --IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GS----ME 251 (475)
Q Consensus 181 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~----~~ 251 (475)
++++++++++.+.+ +-+..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67788888887765 567888888888888889999999999999887644 666776665555544 22 24
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
+.++...++.... |-+...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~---P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN---PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC---CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5677776666642 56677788777777663 34456777777765543 3355666777777764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=69.06 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH-HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 170 (475)
.++.-...+.....+-++-+....+-+.+.+. .+.--++.. .|.+.. +++|+++|++....+ |+-...|.-
T Consensus 119 k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy 190 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVY 190 (557)
T ss_pred CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHH
Confidence 34444444445555566666666555554332 122222333 444444 788888888877643 444444443
Q ss_pred H-HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------HHCC------
Q 011919 171 I-RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM--------------KRHG------ 229 (475)
Q Consensus 171 l-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------------~~~g------ 229 (475)
+ -+|.+..-++-+.+++.-..+. ++.+....|.......+.=+-..|++-.+.+ .+.+
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 3 3455666667777776655543 1223333333322222211111111111111 1110
Q ss_pred ------CCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-------CHHHHH
Q 011919 230 ------CAAN-----LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-------MMKEAL 291 (475)
Q Consensus 230 ------~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~ 291 (475)
+-|. +..--.|+--|.+.+++.+|..+.+++.. ..|-......+ .++..| ...-|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgv--v~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGV--VFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHH--HHHHhhhhcCcHHHHHHHH
Confidence 0000 11112344457778888888887776643 12322222221 222222 244455
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 292 GILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+.|+..-+++..-|.. --..+..++.-..++++++-.++.+..--...|...+| +.++++..|.+.+|+++|-.....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh
Confidence 5555544444332221 12233344444456666666666665543333333333 566777777777777777665533
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 371 GVKPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++ |..+|. .|.++|.+++.++.|+.++-.+... .........+...|.+.+.+--|-+.|+++....
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~----~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP----SERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 333 334444 3445666777777765554333221 1112222333444556666666666666665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-06 Score=79.12 Aligned_cols=208 Identities=16% Similarity=0.121 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...-..+...+.+.|-...|..+++++.. |..+|.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33334566677777777777777776543 555677777777777777777666652 56666666555
Q ss_pred HHHHhc----------------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 314 KGFCVE----------------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 314 ~~~~~~----------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
+..... ++++++.+.|+.-.+.+.- ...+|-.+.-+..+.+++..|.+.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 544333 4444454444444433221 23456666666667778888888887
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 366 KMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 366 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +-.+|...+....+.|.+++|++.+..+.+...
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 77643 555 467888888888888888888888888876633 345677777777788888888888877775422
Q ss_pred -CCChhhHHHHHHHHHh
Q 011919 445 -WLQGPYVDKIVEHLKK 460 (475)
Q Consensus 445 -~~~~~~~~~l~~~~~~ 460 (475)
..|+.+...++....+
T Consensus 619 ~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hcccchhhHHHHHHHHh
Confidence 2355555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=80.56 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=143.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYP---DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|-..|......++.++|.+++++.+.. +++- -...|.++++.-...|.-+...++|++..+.- -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4455666666777777777777777776541 1111 12356666666666677777777777777642 1245667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---RVTISTLIKG 315 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 315 (475)
.|...|.+.+.+++|.++++.|.+. . .-....|...+..+.+.++-++|..++.+..+. -|. .......+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-F--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-h--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7777788888888888888887774 2 245567777777777777777777777776654 222 2333444555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 393 (475)
-.+.|+.+++..+|+..+...++ -...|+..|+.-.++|+.+.+..+|++....++.|.. ..|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 56777777777788777766544 3456777777777778878888888877777665532 33444444333334433
Q ss_pred H
Q 011919 394 E 394 (475)
Q Consensus 394 ~ 394 (475)
.
T Consensus 1689 ~ 1689 (1710)
T KOG1070|consen 1689 N 1689 (1710)
T ss_pred h
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-05 Score=67.08 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=55.4
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
..+...+..++|+.+.+++++.. +-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.-...+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 33444455555555555555432 222333443333333444 345555555555544322 333344333333333331
Q ss_pred --HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 251 --ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 251 --~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
++++.+++++.+.. +.+..+|+...-++...|+++++++.++++.+.+
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 34445554444432 2344455544444445555555555555554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00022 Score=62.48 Aligned_cols=297 Identities=13% Similarity=0.057 Sum_probs=162.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHHHHHhcC
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIKGFCNAG 213 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~ 213 (475)
+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.-+....+. +||-..-. .-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344444555555655555555421 111112222233455555555555555554432 34432211 1122344556
Q ss_pred CHHHHHHHHHHHHHCCCCc--CH------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAA--NL------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~--~~------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.++.|..=|+...+....- .. ......+..+.-.|+...|+.....+.+. .+-|...|..-..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHH
Confidence 6666666666555542100 00 11122334455567777777777777763 2456666666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHH--------
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG----CYSSL-------- 347 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l-------- 347 (475)
+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.++.+ ||.. .|-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHH
Confidence 7777777777776666555442 2344555555666677777777777777776644 3321 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 348 -VVELVRTKRLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 348 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+......+++.++++..+...+......... +..+-.++...|++.+|++...+..+.. +.|+.++.--..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence 1223345667777777776665532211222 3334445566678888888888777753 23577777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.-...+++|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 77778888888777777655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-06 Score=73.60 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 279 QIFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
..+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555544443311 1122344444455555555555555444443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=67.87 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467777887776444322211 10 0122356667777777777776543 677888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
++|...|++..+.. .-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD---ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999888763 22556666666654 56676 588999999998875 2367888888888999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 011919 435 LARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 435 ~~~~m~~~~~~~~~~~~~~l 454 (475)
.++++++.. +|+..-+..+
T Consensus 166 ~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhC-CCCccHHHHH
Confidence 999998887 5555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-06 Score=71.55 Aligned_cols=192 Identities=10% Similarity=-0.039 Sum_probs=115.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTI 309 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 309 (475)
.....+..+...+.+.|++++|...|+++......-+....++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 456677777788888888888888888887742110111245666777888888888888888888765321111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 310 STLIKGFCVE--------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 310 ~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..+..++... |+.++|.+.++.+.+..... ...+..+... +..... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHHHH------HH--------HHHHH
Confidence 3344444433 56677777777776654321 1112111111 000000 00 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...+.+.|++++|...++.+.+.....+.....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455778888888888888888764221224567888888888888888888888777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=77.85 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=166.4
Q ss_pred ccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC-C--------
Q 011919 126 VVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-D-------- 194 (475)
Q Consensus 126 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-------- 194 (475)
.-|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.++|++..+.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 446777777776 6778899999988877665 4567999999999998888887766666431 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
-.|+ .+=.-+.-.....|.+++|+.+|++-++. ..|=..|-..|+|++|.++-+.-.+ . .=..||
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i---HLr~Ty 861 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I---HLRNTY 861 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e---ehhhhH
Confidence 1222 22223333445778899999999987653 3344567778999999988764332 1 123356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 275 TSVIQIFCGKGMMKEALGILDRME----------ALG---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
.....-+-..++.+.|++.|++.. ... -..|...|......+...|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 666666667778888888776532 110 112344455555566677888888888877655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|-++++..|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|.+...
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667788888889999888887653 3555666678888888999999888877654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-05 Score=75.23 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=177.2
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 204 (475)
.+|-...-..+...+.+.|-...|..+|++.. .|.-+|.+|+..|+..+|..+..+..+. +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34555555566778888999999999998764 3777888999999999999998887762 788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-....+..+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQL 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHH
Confidence 888877766788888888764332 22222223344789999999998877753 45667888888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 285 GMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
+++..|.+.|.....- .| +...|+.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+-...+.|.+++|++.
T Consensus 533 ek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999887764 34 4667999999999999999999999999888744 345566677778899999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHH
Q 011919 364 FSKMLASG-VKPDGLACSVMIREL 386 (475)
Q Consensus 364 ~~~m~~~~-~~p~~~~~~~li~~~ 386 (475)
+.++.+.. ..-|......++...
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHH
Confidence 98887521 112444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0005 Score=63.96 Aligned_cols=404 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+-+.+..+++.......+.+..++.... ..++.++..+..-++...+.++++.+..+|..+... ..+...|..-|.
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 5566666776664445566666666553 345566777777788888889999999999988776 344666666665
Q ss_pred HHHH-cCCHHH----HHHHHHhcc-cCCCCC-CHhhHHHHHHH---------HHhcCChhHHHHHHHHhccCCCCC----
Q 011919 138 LCEK-ARLANE----AMWVLRKMP-EFDLRP-DTIIYNNVIRL---------FCEKGDMIAADELMKGMGLIDLYP---- 197 (475)
Q Consensus 138 ~~~~-~~~~~~----A~~~~~~~~-~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~---- 197 (475)
--.+ .++... -.+.|+-.. +.|+.+ +-..|+.-+.- +..+.+.+...++++++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3332 232222 223333322 234322 22334444432 334445666777777776421110
Q ss_pred --ChhhHHHHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCcCH---------------HHHHHHHHHHHhcC---
Q 011919 198 --DIITYVSMIKGF-------CNAGRLEDACGLFKVMKR--HGCAANL---------------VAYSALLDGICRLG--- 248 (475)
Q Consensus 198 --~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~g~~~~~---------------~~~~~ll~~~~~~g--- 248 (475)
|-..|..=|+.. -+..++..|.++++++.. .|...+. ..|..+|.-=-..+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111222212111 122335566666665543 2321111 11222222111000
Q ss_pred ---C--hHHHHHHHHHHHhcCCCCCCcHHHH-HHH----HHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 249 ---S--MERALELLGEMEKEGGDCSPNVVTY-TSV----IQIFCGKGM-------MKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 249 ---~--~~~a~~~~~~~~~~~~~~~~~~~~~-~~l----i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
. -....-++++.... .+..|++... ... -+.+...|+ .+++..+++...+.-..-+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111110 1111221110 000 011222222 3344444444433222223333333
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 011919 312 LIKGFCVEG---NLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIREL 386 (475)
Q Consensus 312 li~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 386 (475)
+...--..- ..+....+++++... ...| .-+|-.+++.-.+..-++.|..+|.+..+.+..+ +....++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 322111111 133444444444432 2222 2235555665556666666666666666655555 445555555544
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCH
Q 011919 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~ 464 (475)
| .++.+-|.++|+-=.++-. .+...-...++-+...++-..|..+|++.+..+++++. ..|+.++..-..-|+.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 4 3455666666664443311 12233345555566666666666666666666444333 4566666666666666
Q ss_pred hHHhhcc
Q 011919 465 ELITNLP 471 (475)
Q Consensus 465 ~~a~~l~ 471 (475)
+.+.++.
T Consensus 489 ~si~~le 495 (656)
T KOG1914|consen 489 NSILKLE 495 (656)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=61.84 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=82.4
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 222 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
.+.+.......+......-...|+..|++++|++..+.... .+.... =+..+.+..+.+-|.+.+++|.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAAL--NVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33333333333333333334456666666666666554211 122222 2333455556666666666666532
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011919 302 CAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 377 (475)
+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+... .-++.
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 44555555554443 23456666666666543 23455556666666666666666666666666543 22344
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCLGGQ-VLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~~g~-~~~a~~~~~~~~~ 404 (475)
+...++..-...|. .+-..+.+..++.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 44444433333332 2333344444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00012 Score=61.83 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=154.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
-..|++..++.......... -++..-..+.++|...|++... ...++... .|.......+.......++.+..+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33466666555544433321 3344444456677777765433 33333322 234444444444444444444433
Q ss_pred -HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 185 -ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444443333333344444567888999999998887621 3444444455677888899999999999872
Q ss_pred CCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011919 264 GGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
.+..+.+.|..++.+ .+.+.+|+-+|++|.++ ..|+..+.+....++...|++++|..++++.+.++..
T Consensus 167 -----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 167 -----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred -----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 466677766666654 45788999999999875 5788889999888999999999999999999988765
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011919 340 SGGCYSSLVVELVRTKRL-KEAEKLFSKMLAS 370 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 370 (475)
+..+...++.+-...|.. +...+.+.++...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455555555554455554 4455666776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0003 Score=61.65 Aligned_cols=296 Identities=11% Similarity=0.023 Sum_probs=207.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM---IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS- 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 238 (475)
++.-.--+...+...|++..|+.-|....+ -|+..|.++ ...|...|+...|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 333344466677788999999999988874 344445444 34677888888888888888876 56643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH----------HHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNV----------VTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
.-...+.+.|.++.|..=|+...+....-.... ..| ...+..+...|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223467899999999999999988531100111 112 223445667899999999999998863 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HH-
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC----SV- 381 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~- 381 (475)
..|..-..+|...|++..|+.=++...+..-. +...+..+-..+...|+.+.++...++-++. .||...+ ..
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 88888889999999999999888877665443 4555666778888999999999999988865 5665432 21
Q ss_pred --HHH------HHHhcCCHHHHHHHHHHHHHcCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 382 --MIR------ELCLGGQVLEGFCLYEDIEKIGFL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 382 --li~------~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+.. .....+++.++.+-.+...+.... ++.....+..+-.++...|++.+|++...+.++.. +.|..++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 111 234457777888877777776433 33344556677777888899999999999998876 56677776
Q ss_pred HHHHHHHhcCCHhHHhh
Q 011919 453 KIVEHLKKSGDEELITN 469 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~ 469 (475)
.-..+|.-...++.|..
T Consensus 346 dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 66777776666666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00031 Score=65.22 Aligned_cols=360 Identities=13% Similarity=0.019 Sum_probs=220.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCCh
Q 011919 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 180 (475)
......|+++.|+..+....... +++...|..-..+|.+.|++++|++=-.+..+. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34556799999999999988876 558888888889999999999998776666654 344 45788899999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHHCC---CCcCHHHHHHHHHHHHhc-------
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA---CGLFKVMKRHG---CAANLVAYSALLDGICRL------- 247 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~------- 247 (475)
++|+.-|.+-++.. +.+...++.+..++.......+. -.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887765 45666777777777211000000 00111111000 000112233333322211
Q ss_pred ---CChHHHHHHHHHHH-----hcC-----CCCCC------------c----------HHHHHHHHHHHHhcCCHHHHHH
Q 011919 248 ---GSMERALELLGEME-----KEG-----GDCSP------------N----------VVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 248 ---g~~~~a~~~~~~~~-----~~~-----~~~~~------------~----------~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.++..|.-.+.... ..+ .+..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111211111000 000 00001 0 1124456666677778888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHHhcCCHHHHHHHHH
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS-------LVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~ 365 (475)
-+....+.. -+..-++....+|...|.+..+...-+...+.|... ..-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888777654 355556677778888888888877777766655432 122332 3346666788888999888
Q ss_pred HHHHCCCCCCHHHHHH-------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 366 KMLASGVKPDGLACSV-------------------------MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~-------------------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
+.+.....|+..+-.. =-..+.+.|++..|...|.++++.. |.|...|....
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRA 399 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRA 399 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHH
Confidence 8765544444322110 1122456688888888888888876 34788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
-+|.+.|.+.+|++=.+..++.. ++....|..=..++.-..+++.|.+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888898888888877777775 4444444444555555566666655443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00011 Score=74.36 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
.+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+.-.|... +.++|.+++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44445555555555555555555555432 33444445555444444 555555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-05 Score=66.24 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+-..+...|+-+....+....... ...|............+.|++..|...+.+...... +|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455666667666666666554432 122444445566667777777777777777766543 3667777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHh
Confidence 77777777777776642 1233455666666667777777777777776654 2255666667777777777777776
Q ss_pred HHHHH
Q 011919 435 LARFM 439 (475)
Q Consensus 435 ~~~~m 439 (475)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 65443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00056 Score=65.94 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=88.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011919 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
+.+......+.+|+.+++.+...... ..-|..+.+.|...|+++.|.++|.+. + .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 44455566777788888777665432 234667777888888888888887654 2 244566778888888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.|.++-.+.... ......|-.-..-+-+.|++.+|.+++-.. | .|+ ..++.|.+.|..+...+++
T Consensus 808 ~da~kla~e~~~~----e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP----EATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHH
Confidence 8887776665542 224455666666666778888887775332 2 233 4567778888877777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.9e-05 Score=74.74 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=155.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII-TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++...+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567888888888899999999998866654 34433 333333355555554433332 344
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 321 (475)
.......++.-+..+...+... .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|....|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 4444555565555555555552 2455678888999999999999999999999886 55788899999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHH
Q 011919 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-------------------GVKPDGLACSVM 382 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~l 382 (475)
+++|.+++.+.+.. |...+++..+.++|.++... |..--..++-.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 99999999887664 34444555555555555543 222223344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQ 447 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 447 (475)
...|...++++++..+++.+.+... .|.....-++.+|. +++.. ...|++.++ .|+..+
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~---~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDN---KNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCC---cchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 5566677778888888888887652 35666677777765 33333 344444443 344444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=73.25 Aligned_cols=183 Identities=9% Similarity=0.021 Sum_probs=135.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.++..+-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|...++.....+.. +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 456888888999999999999999999998885 444 556677788889999999999999999887654 5667788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+..++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+..- +....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~~----- 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHHH-----
Confidence 8888999999999999999998742 23367888888888999999999999999887642 23455555432
Q ss_pred CCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC
Q 011919 427 NHSVEAAKLARFMLKKR----IWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (475)
+...-..+++++.-.+ .+.........+..+.+...
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc
Confidence 3334455555555433 33444456666666655543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.3e-06 Score=64.93 Aligned_cols=110 Identities=7% Similarity=-0.086 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHH
Confidence 4456677778888888888888887653 3356777777788888888888888888888754 24677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+.|++++|++.|+..++.. +.++..+.....+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88888888888888888776 45555554444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-05 Score=64.07 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=79.9
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCC--hHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGS--MERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~a 253 (475)
.++.+++...+++..+.+ +.|...|..+...|...|++++|...|++..+... -+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666665544 56677777777777777777777777777776642 256666666665 355565 4777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+++++..+.. +.+..++..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD---ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777653 345666777777777777777777777777665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-05 Score=63.97 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+-+....+....... .+.|....+..+....+.|++..|...+++...-. ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444455555555555443322 12344455556666666666666666666665433 556666666666666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|..-|.+..+.-.. +....+.+.-.|.-.|+.+.|..++......+ +.|..+-..+.......|++++|.++...
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666666554322 44455555555566666666666666655532 23555555555555666666666655543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00034 Score=64.36 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=62.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 395 (475)
...|++++|+..++.++..-. -|...+....+.+.+.|+.++|.+.++++... .|+ ....-.+.++|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345566666666666555432 24444455555566666666666666666644 444 23333444556666666666
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+++...... +.|...|..|..+|...|+..++.....+
T Consensus 394 i~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666655543 23555566666666555555555444333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-05 Score=75.69 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=60.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
++..+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444444444445555555555555444432 1122333444444445555555555555444432 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555544422 11344444444455555555555555554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00073 Score=62.29 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=59.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 288 (475)
...|+.++|+..++.+.+.- +-|.+........+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChH
Confidence 34555666666666655542 224444445555566666666666666665553 233 334444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
+|+.+++..... .+-|...|..|.++|...|+..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHH
Confidence 666666555544 2335555666666666655555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-05 Score=61.57 Aligned_cols=92 Identities=10% Similarity=-0.094 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34455555666666666666555443 3455555555566666666666666666655543 235555555555666666
Q ss_pred ChHHHHHHHHHHHh
Q 011919 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=57.80 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|..+++...... +.+...+..+...+...
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Confidence 3333444444444444444443332 1233444444444444444444444444443321 22333333344444444
Q ss_pred CCHHHHHHHHHHHHH
Q 011919 285 GMMKEALGILDRMEA 299 (475)
Q Consensus 285 g~~~~a~~~~~~m~~ 299 (475)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0016 Score=65.14 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++...+...|-...+.. +-=...|..|...|....+..+|.+.|+...+.+ ..+...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33444544443333322 2224577788888888778889999999887755 346777888889999999999998884
Q ss_pred HHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011919 188 KGMGLIDLYPDI--ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
-...+.. +.-. .-|....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|.++|.++...
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3332211 1111 22333444567788888888888888776533 7788889999999999999999999888773
Q ss_pred CCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 266 DCSPNVVTYTS--VIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 266 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|+. .|.. ..-..+..|.+.+|+..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2222 22345678888888888876653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-05 Score=59.25 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444455555555554444332 2334444444444545555555555555444432 2234444444445555
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0026 Score=53.62 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
|++++|+++++.+.+.+ |.|.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 100 ~~~~~A~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hchhhHHHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 34444444444444322 233333333333333333333444333333332 22344444444444444444444444
Q ss_pred HHHHHHh
Q 011919 328 LIDKVVA 334 (475)
Q Consensus 328 ~~~~~~~ 334 (475)
.+++++-
T Consensus 176 ClEE~ll 182 (289)
T KOG3060|consen 176 CLEELLL 182 (289)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0029 Score=63.33 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCC-CCCCHhhHHHHHHHH
Q 011919 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~ 174 (475)
.|..+...++..-+...|...|+...+.. .-+......+...|++..+++.|..+.-..-+.. ...-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555556677777777766654 5577788888999999999999999844333221 011222344455567
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCChHH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS--ALLDGICRLGSMER 252 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~ 252 (475)
.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+.... .|+ .+|. -....-+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 78889999999998887765 668889999999999999999999999887765 332 2222 22334566788888
Q ss_pred HHHHHHHHHh
Q 011919 253 ALELLGEMEK 262 (475)
Q Consensus 253 a~~~~~~~~~ 262 (475)
|...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-06 Score=47.90 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00023 Score=56.84 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 324 (475)
.++...+...++.+.....+.+......-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555432111111222223334455555555555555555544311111 122233444455555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
|...++......+ ....+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544222211 222344444555555555555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0016 Score=54.89 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=127.2
Q ss_pred cCChHHHHHHHHHHHhcC-CC-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCH
Q 011919 247 LGSMERALELLGEMEKEG-GD-CSPNVV-TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IKGFCVEGNL 322 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~-~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~ 322 (475)
..+.++..+++.++.... .+ ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+ .-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 456788888888876531 11 233433 35556666777888888888888887652 333222222 1223456888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|+++++.+++.+. .|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888888888888773 35555665556666677777888777777664 3567888888888888888888888888888
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKN---HSVEAAKLARFMLKKR 443 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 443 (475)
.-.. |.+...+..+.+.+.-.| +.+.|.+++.+.++..
T Consensus 181 ll~~---P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ---PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8753 235566666666655443 5666778888877665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.5e-06 Score=48.10 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 305 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=65.72 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334445555677777777777777543 33 33446666666777777777777777543 33566666666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
++++.|+++.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777642 3445577777777777777777777777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=57.78 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~ 384 (475)
|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+...+....|+. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36666666666776666543221 122333445666777777777777777765422221 22333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+...|++++|+..++...... .....+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775543322 23455666777777777777777777654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.013 Score=58.33 Aligned_cols=224 Identities=9% Similarity=0.067 Sum_probs=123.3
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHH
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 183 (475)
..+++..|....+.+.+. .|+.. |..++. ...+.|..++|..+++.....+. .|..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 346677777777666554 23322 222333 34567777777777776655443 2677777777777778888888
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----------ChHHH
Q 011919 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG----------SMERA 253 (475)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~a 253 (475)
..+|+..... .|+..-...+..+|.+.+++.+-.++--+|-+. .+-+.+.+=+++..+.+.- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888777643 466666677777777777766544444444332 1223333333444333321 12335
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
.+.++.+.+.+ |---+..-.......+-..|++++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555543 21111111222233444566677777776 33333322333344445566666677777777777776
Q ss_pred HhCCC
Q 011919 333 VAGGS 337 (475)
Q Consensus 333 ~~~~~ 337 (475)
...|.
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 66653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.9e-06 Score=47.24 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 304 (475)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00029 Score=65.28 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.|+..+...++++.|.++++++.+.+ |+ ....++..+...++-.+|.+++++.++.. +-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555554443 21 12334444444445555555555544331 112333333333444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
+.+.|.++.+++.+.. |.+..+|..|..+|.+.|+++.|+-.++
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555555555432 1244455555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.8e-06 Score=46.98 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=8e-05 Score=69.23 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=70.9
Q ss_pred CccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011919 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 125 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 202 (475)
.+.+......+++.+....+++++..++-+.... ....-..|.+++++.|.+.|..+.+++++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555555566666555666666665555442 11122334456666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666555444555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=68.05 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=86.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011919 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 194 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.++..=.. .|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCCh
Confidence 33556667777777777777777777777777664 2222334556788888888888888888777666 5677888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
.++|.+|+.+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777666666666666655555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00033 Score=53.72 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
++..+...+.+.|++++|.+.|..+.+.. |+ ...+..+..++...|+++.|...++.+.......+....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34556666777777777777777776542 22 2345556667777777777777777777653221112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..++.+.|++++|.+.++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6777777777788887777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.022 Score=56.78 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=112.8
Q ss_pred HHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC
Q 011919 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144 (475)
Q Consensus 65 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 144 (475)
+...+..++...|++-......+++-.+....+..+ .+.+.|+.++|..+++.....+.. |..|...+-..|.+.++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 333333455566666655555544333222222221 345667777777777766555533 67777777777777777
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC----------
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------- 214 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------- 214 (475)
.++|..+|++.... -|+......+..+|++.+++.+-.+.--+|-+ ..+.+...+=++++.....-.
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 77777777777654 35566666666677776665543333222222 112233333344443332111
Q ss_pred HHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011919 215 LEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+. -.+.+...-+.-+..+...+++.+..+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHH
Confidence 223444445444433 11122222223334455566666666662 22221 111222222334444555555555555
Q ss_pred HHHHHHHcC
Q 011919 293 ILDRMEALG 301 (475)
Q Consensus 293 ~~~~m~~~~ 301 (475)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 555555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00023 Score=51.87 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011919 320 GNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTK--------RLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444443321 22344555666666666666666666665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=51.75 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEG--------NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444455666666666666666666 666666666666655442 2334566667777777777777777766
Q ss_pred HHHHh
Q 011919 349 VELVR 353 (475)
Q Consensus 349 ~~~~~ 353 (475)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=50.78 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+.....+.+....++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444444444444444444432110 012233334444444444444444444444321111111223333444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011919 283 GKGMMKEALGILDRMEA 299 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~ 299 (475)
+.|+.++|...++++.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 44444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.3e-05 Score=42.92 Aligned_cols=29 Identities=41% Similarity=0.907 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=3e-05 Score=43.08 Aligned_cols=29 Identities=41% Similarity=0.753 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.005 Score=55.36 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVK-----PDGL-ACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+..+...+.+.|++++|.++|++....... .+.. .+-..+-.+...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555666666666666555443211 1111 111122233445566666666665554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0023 Score=48.59 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++.......++.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888887776544 2345556667777888888888888777653211112333334445667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
..|+.++|++.+-..+... ...|..-+..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 7888888888776665432 235555555553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.041 Score=51.82 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
.+....+++++...-..--..+|..+|+...+..-+..|..+|.+..+.+..+ ++..+++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 56666677776654323334578888999999999999999999999988777 77888899988765 67789999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 366 KMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 366 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
--++. .+| ..-....+.-+...|+-..++.+|++....++.++....+|..++.--..-|+...+.++-+++...
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76654 334 3444566777888999999999999999987666667789999999999999999999998777653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00084 Score=48.63 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...+... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHHH
Confidence 4445566666777777777777766542 12234555566666667777777777777766542 2345666677777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011919 424 CRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~ 442 (475)
...|++++|.+.+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777766543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=54.87 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011919 269 PNVVTYTSVIQIFCG-----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343 (475)
Q Consensus 269 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 343 (475)
.+..+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.|++.+-+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 466666666666654 35666677777777788888888888888777654 3221 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.++...|- .+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111211111 233556666666666666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00072 Score=48.99 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33333444444444444433321 1122333333333334444444444444433322 112233333334444444444
Q ss_pred HHHHHHHHH
Q 011919 252 RALELLGEM 260 (475)
Q Consensus 252 ~a~~~~~~~ 260 (475)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0042 Score=51.23 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555554332221 23444555555555555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0044 Score=48.90 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|.++|+-+...+ +-+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34444555666666666666555433 33444455555555556666666666666655543 25555555666666666
Q ss_pred ChHHHHHHHHHHHh
Q 011919 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=52.88 Aligned_cols=119 Identities=11% Similarity=-0.040 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHH
Confidence 345556666666777777777777776542222 12356666667777777777777777777642 1234455555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCC
Q 011919 420 LLGLC-------RKNHSVEAAKLARFMLKK---RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 420 i~~~~-------~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~ 463 (475)
...+. ..|++++|...+++.... .+..++..+..+...+...|+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 55555 777777666666554422 223444444444444444444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0006 Score=56.29 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=19.2
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4455555566555555666666655555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.014 Score=52.88 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 191 (475)
.+.+..++.+|+..+...++... -+..-|..-+..+...|++++|.--.+.-.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 34445556777777776666542 244555555555666666666665554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0031 Score=58.70 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|+..|++.++.+.. +...|..+..+|...|++++|+..++++++.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666665433 34555566666666666666666666666542 123445555555666666666
Q ss_pred HHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|...|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=51.49 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 354 TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---CCHHHHHHHHHHHHHhCCHHHH
Confidence 35556666666666554211 1223333345555666666666666655 22111 1223333445555666666666
Q ss_pred HHHHHH
Q 011919 433 AKLARF 438 (475)
Q Consensus 433 ~~~~~~ 438 (475)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.003 Score=56.56 Aligned_cols=128 Identities=11% Similarity=0.111 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 34445555555555555555555554332 1122233322222 11133444455555555442 2334444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
.+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555554433 11111 234444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.012 Score=52.86 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcC--CCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHH-HH
Q 011919 240 LLDGICRL-GSMERALELLGEMEKEG--GDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-----NRV-TI 309 (475)
Q Consensus 240 ll~~~~~~-g~~~~a~~~~~~~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~-~~ 309 (475)
+...|... |++++|.+.|++....- .+. ..-...+..+...+.+.|++++|.++|++........ +.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445555 66677766666654410 000 0012234445556666666666666666655432211 111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
...+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22223444456666666666666543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=58.02 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
+|-.++...-+.+..+.|..+|.+.++.+ ..+..+|-..... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555556666666666665432 2223333333333 22234555566666666554 334556666666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+.|+.+.|..+|++.... ++++ ...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666553 1222 235666666666667776666666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011919 240 LLDGICRLGSMERALELLGE 259 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~ 259 (475)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.035 Score=48.46 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
|.+.|.+..|..-++.+.+.-...+........++.+|...|..++|.+..
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 444444444444444444432211122333344444444444444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0098 Score=49.04 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 344555555566666666666666554322211 3455566666666666666666666666532 22344455555
Q ss_pred HHHHhcCCHHH
Q 011919 279 QIFCGKGMMKE 289 (475)
Q Consensus 279 ~~~~~~g~~~~ 289 (475)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0034 Score=51.54 Aligned_cols=64 Identities=14% Similarity=-0.030 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|.+.++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555666666777766666665542221 123566666667777777777777766665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.048 Score=47.63 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+...|.+.|.+..|..-++.+.+.-.+.+........++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345556777777777777777776544444444555566677777777777766655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.1 Score=50.70 Aligned_cols=205 Identities=11% Similarity=0.054 Sum_probs=122.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC-CCCCC--------HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF-DLRPD--------TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 196 (475)
.|.+..|..+.......-.++.|+..|-+.... |++.- ...-..=+.+ --|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 688899998888877777888888888777653 43211 1111111222 2488899999888776543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
..|..+.+.||+-.+.++++.=-. +. ..-...++.+...+.....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 346667778888777776653110 10 011356777777777777788887777654321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
...+.++.+..++++...+-..+. .+....-.+..++.+.|.-++|.+.|-+. +. | .+.+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHH
Confidence 124555555555555554444433 24445556667777777777776655332 11 1 2344556666
Q ss_pred CCHHHHHHHHHHH
Q 011919 355 KRLKEAEKLFSKM 367 (475)
Q Consensus 355 g~~~~a~~~~~~m 367 (475)
+++.+|.++-+..
T Consensus 892 nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 6776766665544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=54.95 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
+.+++.+|+..|.+.++.. .-|.+-|..=..+|++.|.++.|++-.+...... +....+|..|..+|...|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcHHHH
Confidence 4455555555555555432 1233444444445555555555555554444432 12344555555555555555555
Q ss_pred HHHHHHHHHc
Q 011919 433 AKLARFMLKK 442 (475)
Q Consensus 433 ~~~~~~m~~~ 442 (475)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 5555555444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0046 Score=57.53 Aligned_cols=88 Identities=9% Similarity=-0.040 Sum_probs=41.1
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+...|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 334445555555555554432 1234444444445555555555555555544432 22334444444444555555555
Q ss_pred HHHHHHHHHC
Q 011919 219 CGLFKVMKRH 228 (475)
Q Consensus 219 ~~~~~~m~~~ 228 (475)
...|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.094 Score=47.68 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 183 (475)
+|..+.....+.|+.+-|..+++ .+|+..- =+..+.+.|+.+.|
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~---qVplLL~m~e~e~A 45 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRASK---QVPLLLKMGEDELA 45 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChHH---HHHHHhcCCchHHH
Confidence 45666777777888888877664 2344432 23344555665555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.017 Score=45.69 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=39.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
-+...|++++|.++|+.+..... -+..-|-.|-.++-..|++++|+..|........ .+...+-.+..++...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCH
Confidence 33444555555555554443321 1223333333344444555555555555444431 2344444455555555555
Q ss_pred HHHHHHHHHHHH
Q 011919 430 VEAAKLARFMLK 441 (475)
Q Consensus 430 ~~A~~~~~~m~~ 441 (475)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=44.17 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+...|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|...|+++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345667777777777777777765 2366777777777777777777777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.055 Score=45.96 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHhHH
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR--IWLQGPYVDKIVEHLKKSGDEELI 467 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 467 (475)
...|.+.|.+..|..-++.+++.= .+........++.++.+.|..+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555555555555555555542 011112234455555555555433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.024 Score=49.54 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=86.1
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 011919 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 406 (475)
+.-+..+. -|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... ....++..+++++.+..
T Consensus 146 e~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 33344443 267889999999999999999999999988742 23455555555554433 35678889999999875
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
+.|+.+...|...+...|++.+|...|+.|++.. +++..
T Consensus 224 ---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~~ 262 (287)
T COG4235 224 ---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PADDP 262 (287)
T ss_pred ---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCCCc
Confidence 3478888889999999999999999999999987 44443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.19 Score=49.01 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=118.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.|+.+...+.....|++|.+.+..-.. ....+.++.+..++++.+.+-+.+ +-+....-.+..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHH
Confidence 444455555555555555555443221 012334444444444433333322 334555666777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------HH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--------------ST 311 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------------~~ 311 (475)
+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-+...- |...|. .-
T Consensus 864 svGMC~qAV~a~Lr~s~------pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSL------PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hhchHHHHHHHHHhccC------cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHH
Confidence 77887777776654332 22 234556666777777766554321 222221 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh----hhHHHH-HHHH----------HhcCCHHHHHHHHHHHHHC--
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAG----GSVSSG----GCYSSL-VVEL----------VRTKRLKEAEKLFSKMLAS-- 370 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-i~~~----------~~~g~~~~a~~~~~~m~~~-- 370 (475)
-|..+.+.|..-+|-+++.+|.+. +.++-. ....++ +.-+ -+.|..++|..+++.-.-.
T Consensus 929 aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~ 1008 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQ 1008 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhH
Confidence 234556666666666777666543 222210 011111 1111 1234455555444332110
Q ss_pred -----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 -----GVKPDGLAC--SVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 -----~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+..-....| ..|.+--...|.++.|++.--.+.+. .+.| ....|+.+..+-|....+.-.-+.|-++...
T Consensus 1009 ~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp--P~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1009 SRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP--PAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 011112223 33333344557777776655444443 3343 4667777776666666665555666555554
Q ss_pred C
Q 011919 443 R 443 (475)
Q Consensus 443 ~ 443 (475)
.
T Consensus 1087 e 1087 (1189)
T KOG2041|consen 1087 E 1087 (1189)
T ss_pred h
Confidence 4
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.084 Score=44.80 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
...-.....+...|++++|.+.|+.+.....+.+--....-.++.++.+.|++++|...+++..+.-..-...-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 33444556677888899999999888876433233344556677788888888888888888776522111222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
+.+......... ....+... -...+..++.-|=......+|.+.+..+.+. . ...--.+..-|.+.|.
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHccc
Confidence 332211111111 00111100 1234666666666666666666655555421 0 0111224566889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..|..-++.+.+.-...+......-.++.+|.+.|..+.|..
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999753322234566788899999998885543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.027 Score=54.92 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++.....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555544455556666666666666654 3556666666666666666666666666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.061 Score=45.89 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-----
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL----- 240 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----- 240 (475)
+-+.++..+...|.+.-..+++.+.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666666777777777777776554556666667777777777777777777766654333333333332
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...|.-++++..|...++++...+ +.+...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234555667777777777766643 344444444444444456677777777777664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.037 Score=42.04 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555555555555443322 12333444455555555555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.15 Score=46.48 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.+.-|.-+...|+...|.++-.+. -.|+...|..-+.+|+..+++++-.++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555566677788888877776555 246788888899999999999887765432 12346788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..+... .+ +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k------~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK------IP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh------CC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998888877766 11 25566778888988888776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=51.39 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+.+.....+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444444556666666666666654 3332 3444555566666666666666666665432212233444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+...|++++|.+++++.++.-
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555666677777777776666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=55.81 Aligned_cols=138 Identities=11% Similarity=-0.025 Sum_probs=83.2
Q ss_pred CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhc--------CChHHHHHHHHHHH
Q 011919 196 YPDIITYVSMIKGFCNA-----GRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRL--------GSMERALELLGEME 261 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 261 (475)
+.+...|..++++.... ++.+.|..+|++..+.. |+ ...|..+..+|... +++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56667777776664332 22557777777777653 33 33444333333221 12334444444433
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
... ..+.+...|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+..
T Consensus 412 al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 310 123345666666666666788888888888877754 57777888888888888888888888887765543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.27 Score=48.40 Aligned_cols=325 Identities=15% Similarity=0.072 Sum_probs=174.0
Q ss_pred HhcCCccCHHhHHH-----HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHhccC
Q 011919 121 KEEGCVVSVKMMKV-----IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM--IAADELMKGMGLI 193 (475)
Q Consensus 121 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~ 193 (475)
..-|++.+..-|.. +|+-+...+.+..|.++-+.+...-..- ...|.....-+++..+. +++.+..++=...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34577777777765 4667777888999999988876522111 45666777777766422 2333333322222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----
Q 011919 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA----ANLVAYSALLDGICRLGSMERALELLGEMEKEGG---- 265 (475)
Q Consensus 194 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---- 265 (475)
.. -+...|..+.+-....|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+-.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 12 34455666676667889999888887642222110 1122234455556666777766666655554210
Q ss_pred -----CCCCcHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHH----HcCCCCCHHHHHHHHHHHHhcCCHHH--
Q 011919 266 -----DCSPNVVTYTSVIQI--------FCGKGMMKEALGIL--DRME----ALGCAPNRVTISTLIKGFCVEGNLDE-- 324 (475)
Q Consensus 266 -----~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~--~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~-- 324 (475)
..+.....|.-+++- +.+.++-.++..-| +... ..|..|+. .....++.+.....-
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 001111111111110 00111111111111 1100 01222222 223334444333111
Q ss_pred --------HHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 325 --------AYQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 325 --------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
-+++.+.+.. .+..-..-+.+--+..+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1122222221 1222233345566667778888899988888775 67888888888889998888876
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+++-+..+. +.-|...+.+|.+.|+.+||.+++-+.- +.+ ....+|.+.|++.+|.++.
T Consensus 735 ekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 735 EKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 655433321 2447778888999999999998876541 111 4456667777776665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0022 Score=43.39 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|.++|+.+.+.. +.+..++..+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566666666666666653 2255566666666666666666666666666554
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.028 Score=44.82 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
....++..+...|++++|..+.+.+.... |.+...|..++.+|...|+..+|.+.|+++.. .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556667778888888888888888865 34778888889999999999998888877753 48888877655
Q ss_pred H
Q 011919 453 K 453 (475)
Q Consensus 453 ~ 453 (475)
.
T Consensus 141 l 141 (146)
T PF03704_consen 141 L 141 (146)
T ss_dssp H
T ss_pred H
Confidence 4
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=44.11 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.|++++|+++|+.+..... -+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444321 1334444444444444444444444444444
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0039 Score=42.25 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKK 442 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 442 (475)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4556666666777777777777777777754 235667777777777777 577777777776654
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0061 Score=52.92 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
-..+.+++++|++.|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4556677788888888777754 3466667777777888888777777777666543 3345567777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~ 238 (475)
|++.|++.++. .|+-.+|.
T Consensus 168 A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHH
Confidence 77777776654 56655554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=51.36 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|...+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.....+-+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444455666666666666665421110 2345556666666666666666666666532111222333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=41.78 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 1133333444444444444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=52.48 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVA----GGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA----SG-VKPDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~ 377 (475)
.|..|-+.|.-.|+++.|+...+.-+. -|-. .....+..|..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556666888888777655432 1211 1235677788888888888888888876542 22 122344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+.-+|-.+|.-..++++|+.++.+-.. .+-. .-....+..|..+|...|..+.|+.+.+.-+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555667777777788888877665332 1100 014566778888888888888888877665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.28 Score=44.56 Aligned_cols=283 Identities=13% Similarity=0.056 Sum_probs=174.0
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHH
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL--FCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLED 217 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 217 (475)
.|+-..|.++-.+..+. +..|..-.-.++.+ -.-.|+++.|.+-|+.|.. .|.... ...|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 56666666665544321 22344444455544 3347899999999999975 222221 2233333446788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH--HHHHHHHHh---cCCHHHHHH
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY--TSVIQIFCG---KGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---~g~~~~a~~ 292 (475)
|.++-++.-... +.-...+...+...|..|+|+.|+++++.-.+. .-+.+++.-- ..|+.+-.. .-+...|.+
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 888888776653 224577888899999999999999999876653 2233443321 223322111 224455555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011919 293 ILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-S 370 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 370 (475)
.-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+....|+.. .+-.+.+.|+ .+..-++...+ .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 4444333 345532 22334567889999999999999999887766432 2222344554 34444444332 1
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 011919 371 GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 442 (475)
.++|| ..+...+..+-...|++..|+.--+...+.. |....|-.|.+.-. ..|+-.++...+-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~----pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA----PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33554 4566667778888999998887777776642 35667777776654 458999998888887754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.15 Score=41.26 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=54.6
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCChhhHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVSM 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l 205 (475)
|++.---.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+... .-+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 343333344445555555555555555544332333444444444555555555555555554443210 0112223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.+.+...|..+.|+..|+..... -|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 44445555555555555554443 233333222333344444444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.18 Score=46.48 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCG---KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...++-.|-...+++...++++.+..... .+......-....-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 334444566678888888888888888876310 011122222233445555 7788888888877655555667777
Q ss_pred HHHHHHHHH
Q 011919 309 ISTLIKGFC 317 (475)
Q Consensus 309 ~~~li~~~~ 317 (475)
|..+.+.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 776665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.18 Score=40.84 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSL 347 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 347 (475)
|++..--.+..++...|+..+|...|++...--..-|....-.+.++....++...|...++++.+....- +....-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33333334444444444444444444444332222333344444444444444444444444444322100 11122333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~ 369 (475)
...|...|++.+|+..|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.26 Score=42.26 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
+.++..+.-.|.+.-..+++.+..+...+.++.....|.+.-.+.||.+.|...|+...+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444555555555555444344444455555555555555555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0094 Score=40.33 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 298 (475)
.+|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444555554444444432 233444444444444444 3444444444433
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=40.43 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|.+.+++++|.++++.+...+ |.+...|.....++.+.|++++|.+.++..++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45667778888888888877764 2366777777777788888888888888877665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=45.47 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHH
Q 011919 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 196 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
+-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... +..++..+|+++...+ +-|+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccHH
Confidence 3455555555555555555555555555555532 224444444444433322 2445555555555532 23444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+...+...+...|++.+|...|+.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4444555555555555555555555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.031 Score=42.87 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=38.3
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
...|+..+..+++.+|+..|++..|+++++...+. .+++-+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 35677777888888888888888888888777776 446666777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=52.19 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCc
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKML----ASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVD 412 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 412 (475)
.+|..|...|.-.|+++.|+..-+.-+ +.|-+ .....+..|-.++.-.|+++.|.+.|+... +.|-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHH
Confidence 457777777778899999987654432 22322 223567778888888999999999888654 33432 224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+...|...|.-...+++|+.++.+-+.. ..--....+.++..++...|..+.|..++.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455566788888888999999887665432 112345678899999999999999877653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.019 Score=45.82 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44456666667777777777777777643 4566677777777777777777777776653 3467776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.23 Score=37.64 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
....+..+...|+-+.-.+++.++.+.+ ++++...-.+..||.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555554422 45555555555566666666666666555555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.16 Score=48.45 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.+.+...-....+..+ ....+.+++.+...|.++.|+++...-. .-.....+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHH
Confidence 444454444443222222222 4446677777777777777777654321 12556667777777776
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+.+... +...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 655442 556777777777777777777777776643 4556666667777777666666666554
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
-++....++.-.|+.++..+++.+.
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1334444445556666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.57 Score=43.26 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHh---cCChhHHHHHHHHhccCCCCCChhhHH
Q 011919 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
.+...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333344556777777777888777776531 11122222233445555 677777777777744444466777776
Q ss_pred HHHHHH
Q 011919 204 SMIKGF 209 (475)
Q Consensus 204 ~li~~~ 209 (475)
.+.+.|
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=40.98 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+++.+...|...|++++|+..+++..+. |-..+.-..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555566666666666666655532 111000145566667777777777777777766553
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.58 Score=45.43 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
-+-+...+.-|-++|..|-+. ..+++.....+++++|..+-+..
T Consensus 756 ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 333444555555565555431 23445555666666666655544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.081 Score=40.61 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
...|+..+..+++.+|+..|++..|.++.+.+.+.-..| .+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Confidence 345555555555555555556666655555555442222 234555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.88 Score=42.32 Aligned_cols=122 Identities=21% Similarity=0.189 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh-HHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLL 420 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~li 420 (475)
+|.+.+....+..-++.|..+|.+..+.| +.++...+++++.-++ .|+..-|.++|+.-..+- +|... -+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f----~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF----PDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC----CCchHHHHHHH
Confidence 45566666667777888888888888887 5677778888887654 467777878877655442 13333 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHhHHhhc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQ--GPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...++-+.|..+|+..+.+- ..+ ...|..++..-..-|+...|..+
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhH
Confidence 66777888888888888665432 222 45777778777777777555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.27 Score=41.68 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhh
Q 011919 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (475)
.+++.--...|......+...++++++...+....+. ..-+...|. ....++.|.-+.+++.+. .--+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3455555677888888889999999998877765531 122222221 123356666666666652 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCcCHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR---HG--CAANLVAYSALL 241 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g--~~~~~~~~~~ll 241 (475)
|+.....|..+|.++.|-..+++.-+ ..+..++++|+++|++... .+ ...-...+..+-
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 66777788888888887777766532 1133455666666665432 11 011123344555
Q ss_pred HHHHhcCChHHHHHHHH
Q 011919 242 DGICRLGSMERALELLG 258 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~ 258 (475)
+.+.+..++++|-..+.
T Consensus 158 r~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFL 174 (308)
T ss_pred hHhhhhHHhhHHHHHHH
Confidence 56666666666655443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.041 Score=37.65 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|.+.+++++|.++++.++..++. +...+.....++.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444322 333344444444445555555555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.1 Score=45.00 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL--ACSVMIRELCLGGQV 392 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~ 392 (475)
.+.....+++|.-.|+..-+ ...-+.+|..+|++++|+.+..++... -|.. +-..|..-+...++.
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 33344555555555544321 223445555666666666666555311 1111 113344555556666
Q ss_pred HHHHHHHHHHHH
Q 011919 393 LEGFCLYEDIEK 404 (475)
Q Consensus 393 ~~a~~~~~~~~~ 404 (475)
-+|-++..+...
T Consensus 1016 ~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS 1027 (1265)
T ss_pred hhHHHHHHHHhc
Confidence 666555555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.52 Score=37.16 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011919 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. . .+..-...++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3445555555566666666666555542 44555556666555442 2222233321 0 1111233345555555
Q ss_pred CCHHHHHHHHHHH
Q 011919 355 KRLKEAEKLFSKM 367 (475)
Q Consensus 355 g~~~~a~~~~~~m 367 (475)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.26 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
...|..|.+...+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.47 Score=46.03 Aligned_cols=81 Identities=17% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
...+...+.+...+.-|.++|.+|-+ ...+++.....+++++|..+-+...+. .| .+|-....-+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~----dVy~pyaqwL 814 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KD----DVYMPYAQWL 814 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cc----cccchHHHHh
Confidence 44444444455556666677766632 233555566677777777766655543 11 2355556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFM 439 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m 439 (475)
+...+++||.+.|.++
T Consensus 815 AE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhHHHHHHHHHHh
Confidence 7777777777766554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.4 Score=41.22 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCcc-----------CHHh-HHHHHHHHHHcCCHHHHHHHHHhcccC----CCCCCHh
Q 011919 104 SRIKQNPSIIIDVVEAYKEE--GCVV-----------SVKM-MKVIFNLCEKARLANEAMWVLRKMPEF----DLRPDTI 165 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ 165 (475)
.-+.+.++.|.+.+.....+ +-.+ +... =+..++.+...|.+.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34567778888777665543 2121 1122 234556778889999999888887653 3447888
Q ss_pred hHHHHHHHHHh
Q 011919 166 IYNNVIRLFCE 176 (475)
Q Consensus 166 ~~~~ll~~~~~ 176 (475)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88886665544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1 Score=39.64 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|++.+|..+|+....... -+...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44567778888888877765432 23455566777888888888888888877553212222222223444444444444
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
...+-.+.-.. +-|...-..+...|...|+.+.|.+.+-.+.++..+. -|...-..++..+...|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 44444444432 2256666667777777788888777776666653332 334455556665555553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.2 Score=43.45 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.|+.-+..| +.|++..|...|...++. .|+ ...+-.|..++...|++++|..+|..+.+.....+.-..++-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355555433 556677777777777664 222 2344456666777777777777777766654333233456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|..+..+.|+.++|...|++.++.-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 6677777777777777777776653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.038 Score=38.39 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPN-VVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+++.+...|...|++++|++.|++..+.. .+ -.|+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555555444310 00 0011 23344444445555555555555444
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.31 Score=47.25 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 379 (475)
..++....-.|+-+.+++.+.+..+.+-.-.. -.|+.++..++. ....+.|.+++..+.+. .|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34444555555666666555554432211111 123333333332 23455666666666644 5555444
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHH
Q 011919 380 SVMI-RELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD-KIVE 456 (475)
Q Consensus 380 ~~li-~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~~ 456 (475)
...- +.+...|++++|.+.++..... ..-+......+--+..++.-.++|++|.+.|..+.+.. .-+..+|. ...-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 2344556666666666654431 10111233444455555666666666666666666654 22333333 2233
Q ss_pred HHHhcCCH
Q 011919 457 HLKKSGDE 464 (475)
Q Consensus 457 ~~~~~g~~ 464 (475)
++...|+.
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 33444444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.51 Score=37.73 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+. -|+..+-..-.++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666655554433 334445555555555666666666555443321 22223333444555556666666
Q ss_pred HHHHHHHH
Q 011919 397 CLYEDIEK 404 (475)
Q Consensus 397 ~~~~~~~~ 404 (475)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.7 Score=44.87 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=106.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCH------HhHHHHHHHHH----HcCCHHHHHHHHHhcccCCCCCCHhh
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV------KMMKVIFNLCE----KARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~ 166 (475)
+..+++.++-.||-+..++.+....+.+-.-.+ -.|..++..+. .....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 557788888888888888888877654322121 23333343322 245678899999998875 366555
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-H
Q 011919 167 YNNV-IRLFCEKGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL-L 241 (475)
Q Consensus 167 ~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l 241 (475)
|... .+.+...|++++|++.|++...... +.....+--+.-.+.-.++|++|...|..+.+..-- +..+|.-+ .
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 5433 4566678999999999997654211 123344555666778889999999999999886322 33333322 2
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 011919 242 DGICRLGSM-------ERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~-------~~a~~~~~~~~~ 262 (475)
.++...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334456766 889999988765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.3 Score=42.30 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|+.-+..+ +.|++.+|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--+..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 444555555555555554211 112233445555666666666666665555543222222334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011919 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+..+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555555555555555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.074 Score=45.90 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=68.3
Q ss_pred ccCHHhHHHHHHHHHHc-----CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh
Q 011919 126 VVSVKMMKVIFNLCEKA-----RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 200 (475)
.-|-.+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44667777777766543 4566666777788888888888888888876544321 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
.+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111121 1234577888888888888888888888888888775
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.096 Score=45.24 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=45.2
Q ss_pred CcCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC----------------HHH
Q 011919 231 AANLVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM----------------MKE 289 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~~ 289 (475)
+-|..+|-..+..+... +.++-....++.|.+ .|+..|..+|+.|++.+-+..- -+=
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 34555666655555432 445555555556655 4556666666666665543221 122
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 320 (475)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444555555555555555555555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.76 Score=36.19 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=18.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444444444444444444432 344444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.7 Score=41.90 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=182.6
Q ss_pred CCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCH--HHHHHHHH-hcccCCC
Q 011919 89 SYRHSSFMYNR-----ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA--NEAMWVLR-KMPEFDL 160 (475)
Q Consensus 89 ~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~-~~~~~~~ 160 (475)
|.+-+...|.. ++..+...+.+..|+++-..+...-.. ....|......+.+..+. +++++..+ ++... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 45555555554 345566677777887776655332111 134555555555555321 23333333 33221 2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011919 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG------- 229 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------- 229 (475)
....+|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.+...-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888899999999888643322211 122335566677778888887777777665531
Q ss_pred ----CCcCHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011919 230 ----CAANLVAYSALLD--------GICRLGSMERALELLGEME--KEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 230 ----~~~~~~~~~~ll~--------~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+.....|.-+++ .+.+.++-..+...|..-. .... +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111122222221 1112222222222221100 0000 00111112222333333322
Q ss_pred -HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 287 -MKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 287 -~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
..+-+.+.+.+. +.|......+.+--+.-+...|+-.+|.++-.+.. .||...|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222333333 22444445556666677778899999988876654 467788888899999999999988877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+. .+.-|...+.+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.++.-+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 6653 145677889999999999999888654332 22677889999999999876543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.96 Score=36.21 Aligned_cols=91 Identities=14% Similarity=-0.028 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
.--+...|++++|..+|.-+.-.+. -+..-+..|..++-..+++++|...|......+.. |...+-....++...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHhC
Confidence 3345688999999999999886543 24555666666777789999999999988776532 4444666788999999
Q ss_pred CHHHHHHHHHHHHHc
Q 011919 428 HSVEAAKLARFMLKK 442 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~ 442 (475)
+.+.|...|+..+.+
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998874
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.33 Score=44.45 Aligned_cols=97 Identities=18% Similarity=0.067 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.++..|..+|.+.+++.+|++...+.+..+ ++|....-.=-++|...|+++.|+..|+.+.+.. | .|..+-+.++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P-~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--P-SNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--C-CcHHHHHHHHH
Confidence 346778888888889999988888888764 4556665556678888889999999999888864 2 35566666666
Q ss_pred HHHhcCCHHHH-HHHHHHHHHc
Q 011919 422 GLCRKNHSVEA-AKLARFMLKK 442 (475)
Q Consensus 422 ~~~~~g~~~~A-~~~~~~m~~~ 442 (475)
+--+.....+. .++|..|...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 65555544443 6777777754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.083 Score=49.33 Aligned_cols=98 Identities=16% Similarity=-0.027 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.+ + ..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n----~~ 145 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N----LK 145 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c----hh
Confidence 4567888999999999999999999998866 5664 358888889999999999999999999852 1 12
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 011919 416 HSVLLL--GLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 416 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
|..+.. .+....+..+..++++++.+.|.+
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 332111 011223344666777777777743
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.59 Score=41.66 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=98.3
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH----HHHHHHHhcCCHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV----SMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~ 216 (475)
-.|.+.+|...++++.+. ++.|...++..=+++..+|+.+.-...++++...- .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 356677777778777753 45677778877788888888888888887776431 24443332 2333445678888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+|++.-++..+.+ +-|.....+....+--.|++.++.+++.+-... .... .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777664 346777777788888888888888877655432 1000 01112223333445567888888888
Q ss_pred HHH
Q 011919 295 DRM 297 (475)
Q Consensus 295 ~~m 297 (475)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.55 Score=44.10 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=49.6
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLI 193 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 193 (475)
+.+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777778888888888888888888877653 443 34777888888888888888888887753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.084 Score=31.83 Aligned_cols=38 Identities=18% Similarity=-0.043 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+|..+...|.+.|++++|.++++++++.. |.++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 45566666666777777777777766665 444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=33.94 Aligned_cols=136 Identities=12% Similarity=0.191 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---HHHHHHHHHhcCCH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT---YTSVIQIFCGKGMM 287 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 287 (475)
-.|..++..++..+.... .+..-+|.++.-....-+-+...++++.+-+- -|... ...++..|...|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-----FDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-----FDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-----S-GGG-S-THHHHHHHHHTT--
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCchhhcchHHHHHHHHHhcc-
Confidence 356677777777776664 25555666665555555666666666665442 12221 1223333333332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
+...+...+......|+-|.-.+++.++.+ .-.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 233344555666677777777777777664 22345566666777777777777777777777
Q ss_pred HHCCCC
Q 011919 368 LASGVK 373 (475)
Q Consensus 368 ~~~~~~ 373 (475)
-+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.7 Score=45.49 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
|.+....+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|+.+..++..... .-..+-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d---e~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD---ELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH---HHHHHHHHHHHHH
Confidence 44444455566777777766665421 22345677777888888777766654210 0111225566667
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 424 CRKNHSVEAAKLARFML 440 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~ 440 (475)
...+++-+|-++..+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 77788888877776665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.6 Score=37.15 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777787777777765443 2444566777778888888888887776432111111221222333344444444
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCH
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
...+-..+... +.|...--.+...+...|+.++|.+.+-.++++.. .-|...-..+++.|.-.|..
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 44444444442 23666666777777788888888877666665432 34455566667777666643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.79 E-value=3 Score=37.64 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHCC
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCN--AGR----LEDACGLFKVMKRHG 229 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~g 229 (475)
+.+.+++.|.+.|..-+..+|-+..-.... ..+ ...|..+|+.|++..
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 344455555555555555444332222211 111 345666666666653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.74 E-value=4 Score=38.87 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
+..++.+.|+.++|.+.+++|.+.... ........|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444445555555555555433211 12223444555555555555555555544
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.6 Score=36.46 Aligned_cols=66 Identities=17% Similarity=0.013 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC--VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 158 (475)
|-...|+..+..+ ..|+++.|.+.|+.+...-. +-...+.-.++-++-+.++++.|+..+++....
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3345566555444 34777777777777664321 122334444555666777777777777766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.6 Score=43.91 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH----HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
..-+..+....-++.|+.+... .+ .+..+...+.. .+.+.|++++|.+.|-+.... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3445555555666666555432 22 23333333333 445677788887777665432 112 235555
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|........-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+.-. .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 6666666677777777777774 455555677788888888777666655443 2211 11133456666666667777
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
.-+-..... .......+ +-..+++++|+++++.+.-...-+....|...+- ...+++-..++-+..
T Consensus 483 ~~LA~k~~~-------he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 483 ELLATKFKK-------HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHhcc-------CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 665554432 22233333 3456778888888877643222223333332221 234555555555544
Q ss_pred hCCCCCChhhHHHHH-----HHHHhcCCHHHHHHHHHHHHHC
Q 011919 334 AGGSVSSGGCYSSLV-----VELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 334 ~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
.....++.......+ ....-.++++....+++.|.+.
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 433222222222111 1223345677777777767653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.4 Score=37.06 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~ 440 (475)
.+.+.+++++|.++|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3457788888888777544
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.9 Score=36.14 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
.+-|.+.|.+..|..-+++|.+.-...+.....+-.+..+|...|-.++|.+.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 3445666666666666666666522211233445556666666676666666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=4 Score=37.51 Aligned_cols=283 Identities=11% Similarity=0.021 Sum_probs=181.7
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCCHHHHHHHHHhcccCCCCCCHhh--HHHHHHHHHhcCChh
Q 011919 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMI 181 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~ 181 (475)
-.|+-..+.++-.+..+ -+.-|.+-...++. +..-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 35677777776655432 12445555555554 344579999999999999872 32221 233333445789999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHH--HHHHHHHH---hcCChHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAY--SALLDGIC---RLGSMERALE 255 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~--~~ll~~~~---~~g~~~~a~~ 255 (475)
.|..+-+..-..- +--...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 9998888775432 3345678899999999999999999999766543 33443221 22222211 1245667777
Q ss_pred HHHHHHhcCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 256 LLGEMEKEGGDCSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
.-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+- +..-++...+
T Consensus 251 ~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 251 DALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHH
Confidence 76666664 344332 2234567899999999999999999986666542 22334455553 3333333222
Q ss_pred C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 011919 335 G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 335 ~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 405 (475)
. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.- ...|+-.+++..+.+..+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1223 3455666777778889998888777766643 78888887777644 4559999999988888775
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.9 Score=33.68 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.|++++|.+.|+.+...- -+-....--.++.+|.+.+++++|...++..++..+.....-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34455555555555554431 011223334455555555555555555555555443322223444444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.4 Score=44.41 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM----IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...-+..+++...++.|..+...-. .|..+...+ .+-+.+.|++++|...|-+-... ++|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445555666666666666544322 223333222 23334566666666555544332 1221 2344
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
-|....+..+-..+++.+.+.|. .+...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl---a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL---ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc---ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 44555555555566666666442 444455566666666666666655555443 2211 11123344555555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|..+-..... ...... ..+-..+++++|++.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 555554444322 111122 2233456677777766655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.30 E-value=2 Score=33.55 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...+.|++++|.+.|+.+..+-..-+-...+--.++.+|.+.+++++|...+++..+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666666665542111122333444555666666666666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.82 Score=41.97 Aligned_cols=85 Identities=8% Similarity=-0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.+..|..++.+.+++..|++..+...+.+ +.|+...---..++...|+++.|+..|+++++.. |-|...-+.++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 46667778899999999999999999976 3477777788899999999999999999999987 5666666666666
Q ss_pred HHhcCCHhH
Q 011919 458 LKKSGDEEL 466 (475)
Q Consensus 458 ~~~~g~~~~ 466 (475)
..+..+...
T Consensus 335 ~~k~~~~~~ 343 (397)
T KOG0543|consen 335 KQKIREYEE 343 (397)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.6 Score=34.07 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=12.0
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCC
Q 011919 189 GMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 189 ~~~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
.+.+.+++|+...+..+++.+.+.|.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.8 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
+++.+.+.+++|+...+..+++.+.+.|++.....
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444445555555555555555555555444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.4 Score=32.35 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=47.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhc
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT---ISTLIKGFCVE 319 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~ 319 (475)
++...|+++.|++.|.+.... +|.....||.-..++.-.|+.++|++=+++..+..-.-+... |..--..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 455566666666666666652 244555666666666666666666666655554321112211 22222234445
Q ss_pred CCHHHHHHHHHHHHhCC
Q 011919 320 GNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~ 336 (475)
|+.+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 55555555555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.77 Score=40.50 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSA 239 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 239 (475)
+..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3444445555555555555555555443 34555555555555555555555555554443 344444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2 Score=32.73 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555444431 22444555555555555555555555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.99 Score=39.87 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455555555555555555555555443 22445555555555555555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.3 Score=34.77 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
|...|-.+....++..|.+.++.--+. ++..+.+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 333444455556666676666654332 111123556666666665 56666666544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.3 Score=37.20 Aligned_cols=157 Identities=8% Similarity=-0.049 Sum_probs=115.6
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChH
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
-..|++.+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... +++-..++...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888889988874 4778888888889999999999999999988764 23333444556667778899999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~ 328 (475)
+|++.-++..+.+ +-|..+-.+....+-..|+..++.+...+-... +.-.-.+.|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998854 467777778888888999999999887664422 1111122333344455667899999999
Q ss_pred HHHHHhC
Q 011919 329 IDKVVAG 335 (475)
Q Consensus 329 ~~~~~~~ 335 (475)
|+.-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9875443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.1 Score=38.79 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH-Hh---ccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc---CHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMK-GM---GLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAA---NLVA 236 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~-~~---~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~ 236 (475)
+|..+..+.++.|.+++++..-- +| .+.. -..--..|..+.+++-+..++.+++.+-+.-... |..| .-..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 45555566666666665544321 11 1100 0011233444555555555566666555544332 2111 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGG---DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPNRVTI 309 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~ 309 (475)
..++..+....+.++++++.|+...+-.. +-.....+|-.+...|.+..|+++|.-+.....+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34455666666677777777776654211 0112234566677777777777777666544332 2221111112
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 310 S-----TLIKGFCVEGNLDEAYQLIDKVVA----GGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 310 ~-----~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
. .+.-++...|.+.+|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 233355666777766666665543 33222 12344556667777788777777666543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.7 Score=35.85 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
..+..+...|++.|+.+.|.+.|.++.+...+...-...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666667777777777777777665322222223344555666666666666666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.6 Score=35.16 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHc-C-CHHHHHHHHHhcc-cCCCCCCHhhHHHHHH
Q 011919 97 YNRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKA-R-LANEAMWVLRKMP-EFDLRPDTIIYNNVIR 172 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~ 172 (475)
|..++. +.....+|+.+++.... ..+.-|..+...+++..... + ....-.++.+-+. +.+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555442 33445666777764322 34556777777777766552 1 2222223333333 2234577778888899
Q ss_pred HHHhcCChhHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHh
Q 011919 173 LFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLFKV-----MKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.+++.+++.+-.++++..... +..-|...|..+|+.....||..-..++.++ +++.|+..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999998877664 5566888899999999999998777766653 4455677676666665555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.41 Score=28.77 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555553
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=11 Score=37.67 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=103.7
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHhcC-
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMI--KG-FCNAGRLEDACGLFKVMKR-------HGCAANLVAYSALLDGICRLG- 248 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 248 (475)
...|.++++...+.|. ........++ .+ +....|.+.|...|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777766552 1222121222 22 4466788888888888766 44 3335556666666643
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 011919 249 ----SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VE 319 (475)
Q Consensus 249 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 319 (475)
+.+.|+.++......| .|+....-..+.-... ..+...|.++|...-+.|..+ .+-.+..+|. -.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcC
Confidence 6677888888888855 3554433322222222 246788999998888887432 2222222221 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
.+.+.|..++.+..+.|....... ...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 467888888888888883322221 122222333 677777766666666553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=5.3 Score=33.93 Aligned_cols=167 Identities=19% Similarity=0.130 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+......+...+++..+...+...... ........+......+...+++..+.+.+........ .+........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP---DPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC---CcchHHHHHH
Confidence 34444444445555555555554444431 1122334444444444555555555555555544210 0111111111
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011919 279 Q-IFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 279 ~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 44455555555555555433110 01112222222223344445555555544444322211233444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 011919 356 RLKEAEKLFSKMLA 369 (475)
Q Consensus 356 ~~~~a~~~~~~m~~ 369 (475)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.8 Score=33.69 Aligned_cols=227 Identities=21% Similarity=0.120 Sum_probs=159.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 212 AGRLEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
.+....+...+......... .....+......+...+++..+...+...... .........+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 35556666666666554322 13577788888899999999999999888751 01245566777777888888899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 291 LGILDRMEALGCAPNRVTISTLIK-GFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
...+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999888754333 122222333 78899999999999999866332 122334444445567788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86532113567777778888889999999999999886421 23445555555557778999999988888765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.31 Score=27.73 Aligned_cols=26 Identities=12% Similarity=-0.130 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998855
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.52 E-value=3.1 Score=34.29 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCH----HH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANL----VA 236 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~----~~ 236 (475)
.+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.... |...+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555555555555555555555544322221 233444555555555655555555544332 111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 237 YSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
|..+ .+...+++..|-+.|-+...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCc
Confidence 1111 12335677777776655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=4.8 Score=32.49 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=21.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.+..++|+.-|..+.+.|.+--|.. ..-.+.......|+...|...|++.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34444555555555544433222211 111122233444455555555544443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.03 E-value=8 Score=34.25 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI--KQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
...|++.|...--......++.....+++.... ........++++.+.. .+..++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 355667766432223456778878777776654 2345555666666654 3457888899999999999999999999
Q ss_pred HHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH-----hccCCCCCChhhHHHHHHHHHh
Q 011919 151 VLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKG-----MGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 151 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~~ 211 (475)
+++..... +...|...|...|......|+..-..++.++ +++.++..+...-..+-..+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99987665 6677899999999999999999888888775 3566777777766666555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.91 E-value=9.8 Score=34.73 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
.|..|-..|.+..|+++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34445555555555555544433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.81 E-value=11 Score=35.07 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=92.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----AANLVAYSALLDGIC 245 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~ 245 (475)
...+.-+.|+++...++....... .++...+.++... +.++.+++...++.....-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355667788888866666655432 2344445544433 77888888888777665311 112334444444445
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHH---HHHHH--cCCCCCHHHHHHHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-----KGMMKEALGIL---DRMEA--LGCAPNRVTISTLIKG 315 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~---~~m~~--~~~~p~~~~~~~li~~ 315 (475)
+...+.+..++.+-..... .+......++..... ..+++.-..++ ..+.. ........++..+...
T Consensus 80 ~lq~L~Elee~~~~~~~~~----~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS----QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 5544555544444432210 112222223222211 11221111111 11111 0012233455666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+.+.|.++.|...+..+...+... +......-+..+-..|+..+|+..++...+
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677777766666665543111 222333344555566666666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=12 Score=35.58 Aligned_cols=163 Identities=12% Similarity=-0.035 Sum_probs=93.7
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHH
Q 011919 272 VTY--TSVIQIFCGKG-----MMKEALGILDRME-ALGCAPN-RVTISTLIKGFCVE---------GNLDEAYQLIDKVV 333 (475)
Q Consensus 272 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~-~~~~~p~-~~~~~~li~~~~~~---------g~~~~a~~~~~~~~ 333 (475)
..| ..++.+..... ..+.|+.+|.+.. ...+.|+ ...|..+..++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555544322 3567788888877 2234444 33444444333221 23445667777777
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.+.. |..+...+..++...++++.|..+|++.... .||. .+|...-..+.-.|+.++|.+.+++..+..... ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~-~~ 407 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR-RK 407 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh-hH
Confidence 76643 5666666666667777888888888888755 5553 334333344566888888888888877653211 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
..+....++.|+ ....++|++++.+-
T Consensus 408 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 408 AVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 223333344554 44567777776543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.66 E-value=10 Score=34.33 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC-
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCV--E----GNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKR- 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~- 356 (475)
+++.+.+++.|.+.|..-+..+|-+....... . ....+|..+|+.|++..+.. +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888888877776554333332 2 23557888999998875433 22344444433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 357 ---LKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGG--QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 357 ---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.+.++.+|+.+.+.|+..+. .....++..+-... .+.++.++++.+.+.|++. ....|..+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki--k~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI--KYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc--ccccccHHHH
Confidence 35567788888887776543 23333333222211 2457888888999888765 4444655543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.63 E-value=13 Score=35.61 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHH
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVE 350 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~ 350 (475)
+-..+..++-+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-+... +.-..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345666777899999999999999764322 2344677899999999999999999998754322 2223556665544
Q ss_pred HHhcC
Q 011919 351 LVRTK 355 (475)
Q Consensus 351 ~~~~g 355 (475)
+...+
T Consensus 341 aRav~ 345 (539)
T PF04184_consen 341 ARAVG 345 (539)
T ss_pred HHhhc
Confidence 44333
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.57 E-value=9.9 Score=34.10 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=10.9
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011919 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
...+.+.++++.|.+..+
T Consensus 253 ~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHhhcCHHHHHHHHH
Confidence 334566677777766554
|
It is also involved in sporulation []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.55 E-value=12 Score=34.91 Aligned_cols=163 Identities=10% Similarity=-0.025 Sum_probs=97.6
Q ss_pred hhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---
Q 011919 200 ITYVSMI-KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD--GICRLGSMERALELLGEMEKEGGDCSPNVVT--- 273 (475)
Q Consensus 200 ~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 273 (475)
.+|..+- .++.-.|+.++|.++--..++.. ....+..+++ ++.-.++.+.|...|++....+ |+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~ 241 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKS 241 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHh
Confidence 3444332 34556788888887777666653 2223333333 3444677888888888887743 43222
Q ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 274 ----------YTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 274 ----------~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
|..=..-..+.|++.+|.+.+.+.... +..|+...|.....+..+.|+.++|+.--+...+.+..-
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy- 320 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY- 320 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-
Confidence 111122345678888888888877643 344555666666667777888888887777776643211
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...|..-..++...+++++|.+-|++..+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333344555667788888887777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.57 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.4 Score=26.92 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHH
Q 011919 412 DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666666666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.77 E-value=15 Score=34.72 Aligned_cols=137 Identities=9% Similarity=0.002 Sum_probs=78.5
Q ss_pred CCChHHHHHHHHHhhhCCCC---CCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHHcCC
Q 011919 71 PSQSQMGIRFFIWAALQSSY---RHSSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARL 144 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~ 144 (475)
+++.+.+-.+|........- ....+.+. .++.++ -.++.+.....+....+.. | ...|-.+.. .+.+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhh
Confidence 44555555666555433221 11222222 233333 2366677666666665542 2 333444444 3456788
Q ss_pred HHHHHHHHHhcccC--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCCChhhHHHHH
Q 011919 145 ANEAMWVLRKMPEF--DLRP------------DTIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLYPDIITYVSMI 206 (475)
Q Consensus 145 ~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 206 (475)
++.|.+.+..-.+. +.++ |-..=+..+.++...|++.++..+++++... ...-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89998887765543 2222 2222366778899999999999998887553 3346788888865
Q ss_pred HHHHh
Q 011919 207 KGFCN 211 (475)
Q Consensus 207 ~~~~~ 211 (475)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=4.6 Score=35.95 Aligned_cols=102 Identities=10% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011919 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
......+...++..-.....++.+...+-++.... ..++. +-...++.+. .-++++++.++..=+..|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444455555555555566666666665554321 11111 1122233222 2355667776666666777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++.+|..+.+.+++.+|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=16 Score=34.79 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=64.6
Q ss_pred HHHHHHHHhcC-----ChhHHHHHHHHhcc-CCCCCC-hhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCC
Q 011919 168 NNVIRLFCEKG-----DMIAADELMKGMGL-IDLYPD-IITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g-----~~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~ 231 (475)
...+++..... ..+.|+.+|.+... ..+.|+ ...|..+..++. ...+..+|.++-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 45555544421 34567777877762 222343 233333222221 1223445555555555554 2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
-|......+..++.-.++++.|...|++....+ |-...+|......+.-.|+.++|.+.+++..+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 355555555555566666666666666666532 22233444444444556666666666666443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.36 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011919 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
|++.++.. |-++..|..+...+...|+.++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555 666667777777777777777665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=13 Score=33.39 Aligned_cols=232 Identities=10% Similarity=0.009 Sum_probs=111.7
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHhccCCCCCChhhHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM----IAADELMKGMGLIDLYPDIITYV 203 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~ 203 (475)
+.......+..+...|. .++...+..+.. .+|...-...+.++.+.|+. +++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444445555555553 333333333332 23444445555566666653 3455555554222 34544444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 204 SMIKGFCNAGRL-----EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 204 ~li~~~~~~~~~-----~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+.++...+.. ..+...+..... .++..+-...+.++.+.|+ +++...+-.+.+. ++..+-...+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~~A~ 180 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRNWAA 180 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHHHHH
Confidence 444444443321 122333333222 2345555556666666665 4455555555542 3334444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011919 279 QIFCGKG-MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
.++.+.+ +...+...+..+.. .++...-...+.++.+.|+. .|...+-...+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 4555432 23345555555443 23555555566666666663 44444444444332 133456666666664
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
+|...+..+.+. .||...-...+.+|
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 466666666643 34555555554444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.3 Score=33.78 Aligned_cols=72 Identities=11% Similarity=-0.074 Sum_probs=31.2
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
+.|.+.|-++...+.--++.....|...| ...|.+++.+++-+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444222222222222222 244455555555544431 1234455555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.77 E-value=18 Score=34.15 Aligned_cols=146 Identities=12% Similarity=-0.013 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIR 384 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 384 (475)
..|...+++..+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+...|.++|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 446677788888888999999999999988 5678888999998776 47788899999876544 4555444 34556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
-+...++-+.|..+|+...++--. ..-...|..+|.--..-|+...+..+-+.|... .|...+...+..-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~-~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK-TQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH-hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 677889999999999965543110 112467999999988999999988887777654 34444444444333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=4.4 Score=36.06 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
++++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.67 E-value=25 Score=35.67 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh---
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG--- 283 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 283 (475)
..+.-.|.+|.|.+.+-+ ..+...+.+++...+.-|.-.+-.+... ..+.....+ .|...-+..||..|++
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~-~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG-DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC-CCCCcCHHHHHHHHHHHHh
Confidence 444456777777776665 2222344555544444333222111111 222211110 0112456778888875
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 011919 284 KGMMKEALGILDRMEALG 301 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~ 301 (475)
..++.+|++++-.+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 467888888888776543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.35 E-value=4.5 Score=29.03 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
+.-.+.+-++.+......|++....+.+++|.+.+++..|+.+|+-.+... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444566777778888889999999999999999999999999999776431 124456766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.24 E-value=5.9 Score=28.43 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
-++.+-++.+....+-|++....+.++||.+.+++..|.++++.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666666666666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.69 E-value=9.8 Score=37.19 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=89.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011919 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
.-+++++.|..++.... ....+.+.+.+.+.|..++|+++- +|.. .-.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHH
Confidence 34567776666544321 344455666677777777665542 1211 1122344667777777
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011919 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++..+.. +..-|..|.++....+++..|.+-|..... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7765542 456677777777788887777777765432 3455666666777666666666666654
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
. - |...-+|...|+++++.+++.+-
T Consensus 723 ~---~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K---N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c---c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 22333556677777777776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.7 Score=24.04 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...+...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468888899999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.5 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+++.+...|...|++++|.+++++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888899999999999998887753
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.37 E-value=25 Score=32.69 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011919 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 335 (475)
....+|..+...+.+.|.++.|...+..+...+... +......-+...-..|+.++|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754221 3344445566777889999999999988873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.30 E-value=4 Score=29.58 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666666666666665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.13 E-value=12 Score=36.65 Aligned_cols=133 Identities=17% Similarity=0.097 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..-+.+.+.+.+.|-.++|+++- +|... -.....+.|+.+.|.++..+.. +..-|..|-+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 34456666677777777776542 12111 1233456788888877765543 4566788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHH
Confidence 88888888888888876544 556777777777777666666666655532 233345566788888
Q ss_pred HHHHHHHH
Q 011919 395 GFCLYEDI 402 (475)
Q Consensus 395 a~~~~~~~ 402 (475)
+.+++..-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 77666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.1 Score=23.50 Aligned_cols=30 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|..+...+.+.|++++|++.+++.++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 346667777777888888888887777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.20 E-value=16 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHH-HHHHHHHcCCHHHHHHHHHhccc
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~ 157 (475)
.++.+.+..++..++.. .|....... -...+.+.|++.+|..+|+.+.+
T Consensus 23 ~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred cCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34555555555555443 222222221 12244455556666666655544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.19 E-value=0.7 Score=36.55 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=48.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011919 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
++..+...+.+......++.+...+...+....+.++..|++.+..++...+++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3444555566666666777776655555667777777777777666666666652222 222345555555566
Q ss_pred hhHHHHHHHHh
Q 011919 180 MIAADELMKGM 190 (475)
Q Consensus 180 ~~~a~~~~~~~ 190 (475)
++.|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.04 E-value=11 Score=27.41 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
+..+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+--. ....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~---~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN---KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT----TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC---hHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877765321 2225665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.88 E-value=1.8 Score=29.69 Aligned_cols=48 Identities=4% Similarity=-0.125 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
..++.++|+..|+...+.-..++.--.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776544433445666777777777777777665
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.81 E-value=17 Score=29.21 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=6.1
Q ss_pred hcCCHHHHHHHHHHH
Q 011919 211 NAGRLEDACGLFKVM 225 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m 225 (475)
..|++.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.58 E-value=11 Score=31.48 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=54.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhcCC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (475)
-+.+.|| +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+....- .+|+..+..|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455565 667777777777665545555555554444 667778887777766543222 5777788888888888888
Q ss_pred HHHHH
Q 011919 287 MKEAL 291 (475)
Q Consensus 287 ~~~a~ 291 (475)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87775
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.25 E-value=19 Score=29.31 Aligned_cols=141 Identities=9% Similarity=-0.017 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh-HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh-hHH
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-IYN 168 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 168 (475)
..+...|...+. +...+..+.|+.-|..+.+.|..--+.. .--......+.|+...|+..|+++-.....|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 356777776665 4566888999999999998775422221 1122336678899999999999987653333322 111
Q ss_pred HH--HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 169 NV--IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 169 ~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
.| .-.++.+|.++....-++.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 22467889999999999988776644455556677778889999999999999988754333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.5 Score=24.52 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666655543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.71 E-value=8.9 Score=32.34 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 223 (475)
.++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3344444444444444444333322 2233333344444444444444443333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.57 E-value=18 Score=28.55 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011919 343 CYSSLVVEL---VRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 343 ~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
+.+.||+.. ...++++++..++..|.-. .|+. .++...+ +...|++++|.++|+++.+.+.. ..|
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-----~p~ 79 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-----PPY 79 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-----chH
Confidence 344555443 3578999999999999854 5654 4444444 57889999999999999987532 125
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhH
Q 011919 417 SVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~ 451 (475)
..-+.++|-.-.-|-.. ..-++++..+-+++....
T Consensus 80 ~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 80 GKALLALCLNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 55555555433222233 344566666645554433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.57 E-value=13 Score=32.78 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-----
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC----- 210 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 210 (475)
|.+++..+++.+++...-+..+.--+........-|-.|.+.|.+..+.++-.......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666655443332211112223333344445566666665555555443211122223444443332
Q ss_pred hcCCHHHHHHHH
Q 011919 211 NAGRLEDACGLF 222 (475)
Q Consensus 211 ~~~~~~~a~~~~ 222 (475)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 245555555444
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.37 E-value=2.9 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|..+..+|...|++++|++.|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44455555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.91 E-value=19 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=27.4
Q ss_pred cCChhHHHHHHHHHHhcCC-ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 011919 107 KQNPSIIIDVVEAYKEEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 158 (475)
..+++.+..+++.|+-... .+...+|. ...+.+.|++.+|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666655321 11222222 23455667777777777776664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.90 E-value=11 Score=31.92 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIRE 385 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 385 (475)
|.+.-++.+.+.+.+.+++...++-++..+. |...-..+++.||-.|++++|..-++-.-.. ...+....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567777888999999988887776543 5566777889999999999998766655432 123445667776654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.49 E-value=3.4 Score=22.68 Aligned_cols=30 Identities=13% Similarity=-0.158 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...|...|++++|.+.|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888999999999998887653
|
... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.45 E-value=45 Score=32.27 Aligned_cols=179 Identities=10% Similarity=0.057 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
+..-.-+++..++.+-++..+..+..+|...| -+--.|..++..|..++ -+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344456677777777777777777777654 24456666777777774 46777777777776542 4444444444
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHh
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYP-----DIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~ 246 (475)
.|-+ ++.+.+..+|.+....=++. =...|.-+.... ..+.+..+.+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777665432211 112344333321 34566666666655542 333334455555566777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
..++++|++++..+.+.. ..|..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d---~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD---EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc---chhhhHHHHHHHHH
Confidence 777888888777777643 34555555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.74 E-value=3.7 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
|..+...+...|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.61 E-value=27 Score=29.06 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=79.2
Q ss_pred HHHHHhhhCCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH--HHHHHHHcCCHHHHHHHH
Q 011919 79 RFFIWAALQSS----YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV--IFNLCEKARLANEAMWVL 152 (475)
Q Consensus 79 ~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~A~~~~ 152 (475)
-+|-|...+.. .......|..++..... +.+ .....++.+...+..-.-.++.. +...+...+++++|+..+
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34566544332 12234567777766643 333 44555555555431211122222 223567788888888888
Q ss_pred HhcccCCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 153 RKMPEFDLRPDTIIYN-----NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..... |.-..+. .|.+.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|+...+
T Consensus 113 ~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 113 KQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 876642 2223332 344566777888888888776654321 112223334567777777888777777776
Q ss_pred CC
Q 011919 228 HG 229 (475)
Q Consensus 228 ~g 229 (475)
.+
T Consensus 188 ~~ 189 (207)
T COG2976 188 SD 189 (207)
T ss_pred cc
Confidence 64
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.40 E-value=0.79 Score=36.26 Aligned_cols=84 Identities=6% Similarity=-0.051 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++ .. +..-...++..+.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS------SSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc------cccCHHHHHHHHHhc
Confidence 555666666777777777777765545556666777777777766666665555 11 111123455556666
Q ss_pred CCHHHHHHHHHHH
Q 011919 427 NHSVEAAKLARFM 439 (475)
Q Consensus 427 g~~~~A~~~~~~m 439 (475)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 6776666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.38 E-value=27 Score=29.00 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACS-----VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
...+...|++++|..-++..... |....+. .|.+.....|.+++|+..++...+.+. .......-.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhH
Confidence 45677888888888888876643 2223333 344556778889999988888887654 23445566788
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 011919 423 LCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+...|+-++|..-|.+.+..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888999999999998888876
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.74 E-value=64 Score=32.86 Aligned_cols=399 Identities=13% Similarity=0.103 Sum_probs=191.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhc----CCccCHHhHHHH-HHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMY-----NRACEMSRIKQNPSIIIDVVEAYKEE----GCVVSVKMMKVI-FNLC 139 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~ 139 (475)
...+.+.|...+........- ++-..+ ..+++.+... ++..|...++...+. +..+-...|..+ +..+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~-~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKT-NPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 367778887776654322211 222211 1233444444 444488777776543 222334445444 3344
Q ss_pred HHcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHH--hcCChhHHHHHHHHhccCC---------CCCChhhHHHH
Q 011919 140 EKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLID---------LYPDIITYVSM 205 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l 205 (475)
...+++..|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++.... ..|...+|..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 44479999999998876531 2344455555555544 3455666777776652211 23456677777
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHH-------CC----------CC-------------cCHHH---------HHHHHH--
Q 011919 206 IKGFC--NAGRLEDACGLFKVMKR-------HG----------CA-------------ANLVA---------YSALLD-- 242 (475)
Q Consensus 206 i~~~~--~~~~~~~a~~~~~~m~~-------~g----------~~-------------~~~~~---------~~~ll~-- 242 (475)
+..++ ..|+++.+.+.++++.+ .. ++ +.... ..-++.
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l 309 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGL 309 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHH
Confidence 76554 56776666665554432 10 00 01111 111122
Q ss_pred HHHhcCChHHHHHHHHHHHhc--------CCCCCC------cHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHH
Q 011919 243 GICRLGSMERALELLGEMEKE--------GGDCSP------NVVTYTSVIQ---------IFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~--------~~~~~~------~~~~~~~li~---------~~~~~g~~~~a~~~~~~m~~ 299 (475)
.++..|..++|.+++++..+. .....- +...|...+. ..+-.+++..|...++.|.+
T Consensus 310 ~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~ 389 (608)
T PF10345_consen 310 HNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQ 389 (608)
T ss_pred HHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 122334444555555443321 000000 1112222222 22457889999999998886
Q ss_pred cCC-CCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHH--HHHHHh--cCCHHH
Q 011919 300 LGC-APN-----RVTISTLIK--GFCVEGNLDEAYQLID--------KVVAGGSVSSGGCYSSL--VVELVR--TKRLKE 359 (475)
Q Consensus 300 ~~~-~p~-----~~~~~~li~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~ 359 (475)
..- .|+ ...+...+. .+...|+++.|...|. .....+...+..++..+ +-.+.. ....++
T Consensus 390 ~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~ 469 (608)
T PF10345_consen 390 LCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSE 469 (608)
T ss_pred HHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhh
Confidence 421 111 122222222 3445699999999997 44445544444443332 111222 222233
Q ss_pred --HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhc
Q 011919 360 --AEKLFSKMLAS-GVKP--DGLACSVM-IRELCLGGQ--VLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 360 --a~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g~--~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+.++++.+... .-.| +..++..+ +.++..... ..++...+.+..+ .+... .-..+++.+...+. .
T Consensus 470 ~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~lm~~~lf-~ 547 (608)
T PF10345_consen 470 SELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLNLMGHRLF-E 547 (608)
T ss_pred hHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH-c
Confidence 66777766432 1122 23333333 333332221 2244433333222 11100 01122333333333 6
Q ss_pred CCHHHHHHHHHHHHHcCCCC---ChhhH-----HHHHHHHHhcCCHhHHhhccc
Q 011919 427 NHSVEAAKLARFMLKKRIWL---QGPYV-----DKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|+..+..+............ ....| ..+.+.+...|+.++|..+.+
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~ 601 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQ 601 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888766655544322122 33444 244455888899999987654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.16 E-value=3.6 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555555554444
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.91 E-value=25 Score=27.67 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHhcCCccCHH--hHHHHHHHHHHcCCHHHHHHHHHhcccCCC-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhc
Q 011919 120 YKEEGCVVSVK--MMKVIFNLCEKARLANEAMWVLRKMPEFDL-----RPDTIIYNNVIRLFCEKGD-MIAADELMKGMG 191 (475)
Q Consensus 120 ~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 191 (475)
|.+.+..++.. ..|.++......+++...+.+++.+..... ..+...|+.++.+..+..- --.+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444432 344555555555666666666665522100 1233455566655544433 223455555555
Q ss_pred cCCCCCChhhHHHHHHHHHhc
Q 011919 192 LIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.+.+++..-|..+|.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555555555666666555444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.73 E-value=11 Score=34.15 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
+-|.+.|++++|++.|..-+.... .+..++..-..+|.+..++..|+.-....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 567778888888888877665432 155666666777777777777766665554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.45 E-value=42 Score=29.90 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHhccCCCCCC-----------------hhhHHHHHHHHHhcCCHHHHHH
Q 011919 159 DLRPDTIIYNNVIRLFCEK-GDMIAADELMKGMGLIDLYPD-----------------IITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+++-|+.-|-..++..-.. -.++++.+++...+. +.-|+ ..+++...+.|..+|.+.+|.+
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3556666666666554332 235566666555432 11111 1123445567888999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+...... +.+...+..++..+...||--.|.+-++.+.
T Consensus 301 l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 301 LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 998888764 5577888889999999998777776666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 2e-17
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 10/221 (4%)
Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLIDLYPDIITYVSMIK 207
+ + L + + A L G + Y +++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE-LLGEMEKEGGD 266
G+ G ++ + ++K G +L++Y+A L + R +E L +M +EG
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-- 231
Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
+ ++ ++K + P V S L++ +
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
+L + + L +EL + EK
Sbjct: 292 KLHLPLKTLQCL----FEKQLHMELASRVCVVSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 6e-11
Identities = 23/204 (11%), Positives = 60/204 (29%), Gaps = 8/204 (3%)
Query: 92 HSSFMYNRACEMSRIKQNPSIIID--VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
S + A + S+ ++ + + + + F C A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 150 WVL---RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
+L + +YN V+ + +G ++ + L PD+++Y + +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 207 KGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
+ + + M + G + + LL R ++ ++
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP- 266
Query: 266 DCSPNVVTYTSVIQIFCGKGMMKE 289
P V + +++ K
Sbjct: 267 -QLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 7e-09
Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
SP ++Q GK + + + + + K + L A+
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 328 LIDKV---VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
L+ + + Y+++++ R KE + + +G+ PD L+ + ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 385 ELCLGGQVLE 394
+ Q
Sbjct: 209 CMGRQDQDAG 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 4e-11
Identities = 82/539 (15%), Positives = 154/539 (28%), Gaps = 184/539 (34%)
Query: 30 SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
S E H+ + + + TL L S+ + ++ F+ L+ +
Sbjct: 47 SKEE--IDHIIMSKDAVSGTL--------------RLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 90 YRHSSFMYNRACEMSRIK---QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
Y F+ MS IK + PS++ + ++ + K +N+ RL
Sbjct: 91 Y---KFL------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS---RL-- 134
Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------LI 193
+ LR+ +LRP + +I G + G G +
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---LID-----G--------VLGSGKTWVALDVCLSYKVQ 177
Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
I ++++ LE L + + + + + + L R+ S++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAE 233
Query: 254 L-ELLGEMEKEGGDC--------SPNVV-------------------------TYTSVIQ 279
L LL K +C + T T +
Sbjct: 234 LRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 280 IFCGKGMMK-EALGILDRM----------EALGCAPNRVTISTLIKGFCVEG-------- 320
+ E +L + E L P +S +I +G
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLS-IIAESIRDGLATWDNWK 348
Query: 321 --NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
N D+ +I+ + L R K+F L+ V P
Sbjct: 349 HVNCDKLTTIIES-----------SLNVLEPAEYR--------KMF-DRLS--VFPP--- 383
Query: 379 CSVMIRELCLGGQVLE---GFCLYEDIEKI--GF--LSSVDSD-------IHSVLLLGLC 424
S I +L + D+ + S V+ I S+ L
Sbjct: 384 -SAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 425 RKNHSVEAAK--LARFMLKKRI--W-LQGPYVDK-----IVEHLKKSGDEELITNLPKI 473
+ + + + + + K L PY+D+ I HLK E +T +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.13 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.9 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.71 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.42 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.38 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.11 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.59 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.25 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.58 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.55 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.2 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.93 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.83 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.78 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.69 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.15 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.87 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.53 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.4 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.11 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.36 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.05 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.4 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.99 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.71 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.27 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 82.09 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 81.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.79 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.64 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.43 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=280.62 Aligned_cols=401 Identities=9% Similarity=-0.060 Sum_probs=297.5
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..++.+.|...|..+.. ..|+...+..++..+...|+++.|..+++.+... +++..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 34445555554 56788888888877653 2346677778888888888888888888876543 677888888888
Q ss_pred HHHHcCCHHHHHHHHHhccc-C--------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-------
Q 011919 138 LCEKARLANEAMWVLRKMPE-F--------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL------- 195 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------- 195 (475)
+|.+.|++++|..+|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 88888888888888885432 2 2344678888888888888888888888888765331
Q ss_pred ---------------------------------------------------------------CCChhhHHHHHHHHHhc
Q 011919 196 ---------------------------------------------------------------YPDIITYVSMIKGFCNA 212 (475)
Q Consensus 196 ---------------------------------------------------------------~~~~~~~~~li~~~~~~ 212 (475)
+++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 24555566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666666665542 255566666666666666666666666666532 4567778888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887653 33567888888888888888888888888877653 256778888888888888888888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011919 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
..+..+|..+...|.+.|++++|.++|+++.+. +..|.....+|..++.+|.+.|++++|.++++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 346778888888888888888888888888775 44442116788888888888888888888888888877 6678
Q ss_pred hhHHHHHHHHHhcCCHhHHhhccc
Q 011919 449 PYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++..+..+|.+.|++++|.+..+
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888888888888877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=274.64 Aligned_cols=368 Identities=9% Similarity=-0.062 Sum_probs=312.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788999999999999999999999999854 678899999999999999999999999998653 57899999999
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------
Q 011919 172 RLFCEKGDMIAADELMKGMGLI---------------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC------ 230 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------ 230 (475)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999964322 2234688999999999999999999999999876432
Q ss_pred ----------------------------------------------------------------CcCHHHHHHHHHHHHh
Q 011919 231 ----------------------------------------------------------------AANLVAYSALLDGICR 246 (475)
Q Consensus 231 ----------------------------------------------------------------~~~~~~~~~ll~~~~~ 246 (475)
+++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1566777778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887653 3466778888888888888888888888887553 456788899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999875432 57789999999999999999999999998764 3477889999999999999999999999999865
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++.+
T Consensus 472 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 472 ---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 237788999999999999999999999999886 65676 6789999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=258.70 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=138.4
Q ss_pred HHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---------H
Q 011919 146 NEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------L 215 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~ 215 (475)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666665554443 34677777777777777777777777777777777777777777776543 5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777776 3456777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777776664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=260.69 Aligned_cols=204 Identities=12% Similarity=0.135 Sum_probs=115.2
Q ss_pred HHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC---------H
Q 011919 218 ACGLFKVMKRHGCAANL-VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM---------M 287 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 287 (475)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |++||..+||.+|.+|++.+. .
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34444555555544333 24555666666666666666666666663 356666666666666655443 4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..| +..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666554 55666666555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-26 Score=218.46 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=322.6
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...++++.|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 677888888876654432 2345666677778888999999999999888765 6788999999999999999999999
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999998754 3456689999999999999999999999998764 3455677788889999999999999999999874
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..... +.+..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3368899999999999999999999999999854 4567789999999999999999999999988763 33578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987643 56789999999999999999999999998763 457889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++++.. |.+...+..+...+.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999998864 2467899999999999999999999999999876 6677788888888777664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-27 Score=220.20 Aligned_cols=358 Identities=13% Similarity=0.024 Sum_probs=312.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
...+...|+++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345567899999999999988764 5566777777788999999999999999887754 46788999999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998754 4456789999999999999999999999999875 235667788899999999999999999999
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++....... +
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 8853 4567899999999999999999999999999864 335778889999999999999999999999886543 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..+|..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 7789999999999999999999999999864 2357789999999999999999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|.+.++++++.. |.+...+..+...+.+.|++++|.+..+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 6778899999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-22 Score=196.08 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=294.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777888889999999999999998764 5678899999999999999999999999998765 34678899999
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
.++.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998754 3333 555555 344889999999999999999864 447889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 011919 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL---- 312 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 312 (475)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999999999998753 4678899999999999999999999999998753 2234444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 313 --------IKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
...+.+.|++++|...|+.+.+...... ...|..+...+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 7889999999999999999988543211 3478889999999999999999999998753 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HcC
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------LCRKN-----HSVEAAKLARFML-KKR 443 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~~ 443 (475)
+..+|...|++++|...++++.+.. | .+...+..+..+ |...| +.+++.+.++++. +..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN--E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999854 3 356677776633 33344 6677888888743 332
Q ss_pred C--CCCh-------hhHHHHHHHHHhcCCHhHHhh
Q 011919 444 I--WLQG-------PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 444 ~--~~~~-------~~~~~l~~~~~~~g~~~~a~~ 469 (475)
. .++. ..+..+..+|...|+.+...+
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 1222 377888899999998877543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-23 Score=197.55 Aligned_cols=319 Identities=12% Similarity=0.065 Sum_probs=270.8
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5677889999999999999999999999998754 4578899999999999999999999999998865 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL---VAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
..++.+.|++++|...|+++.+... .+. ..+..+ ...+.+.|++++|...|+++.+.. +.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Confidence 9999999999999999999998642 233 555555 445899999999999999998853 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 011919 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL--- 347 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 347 (475)
..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998763 446889999999999999999999999999876433 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011919 348 ---------VVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 348 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
...+...|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 329 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME---PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccH
Confidence 78899999999999999999875 454 4478888899999999999999999998864 2477
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+|..+..+|...|++++|.+.++++++.. |.+...+..+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 899999999999999999999999999876 55666676666443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=199.16 Aligned_cols=359 Identities=12% Similarity=-0.060 Sum_probs=217.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...|....... |+...|..+...+...|+++.|...++.+.+.+ +.+..++..+..++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4678888888888776554 467788888888888888888888888887765 556778888888888888888888
Q ss_pred HHHHhcccCCCCCCHh----------------------------------------------------------------
Q 011919 150 WVLRKMPEFDLRPDTI---------------------------------------------------------------- 165 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 165 (475)
..|+++.+.+. ++..
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 88888866542 1211
Q ss_pred ---------------hHHHHHHHHHh---cCChhHHHHHHHHhcc-----CCC--------CCChhhHHHHHHHHHhcCC
Q 011919 166 ---------------IYNNVIRLFCE---KGDMIAADELMKGMGL-----IDL--------YPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 166 ---------------~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~~~ 214 (475)
.+......+.. .|++++|...|+++.+ ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 11222222222 5666666666666554 210 1123445555566666666
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...++++.+.. |+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666666553 225556666666666666666666666665532 334555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 011919 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~ 373 (475)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+... .
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 6665543 223445555666666666666666666666554322 344555666666666666666666666554211 1
Q ss_pred CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 374 PD----GLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++ ...+..+...+.. .|++++|...++.+.+.. +.+..++..+...+.+.|++++|.+.++++++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2255555566666 666666666666666543 1245556666666666666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=192.17 Aligned_cols=366 Identities=11% Similarity=-0.086 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 95 FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
..+......+...|+++.|+..++.+.+.. |+...|..+..++.+.|++++|+..|+++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677888999999999999999875 689999999999999999999999999998765 45678999999999
Q ss_pred HhcCChhHHHHHHHHhccCCC-----------------------------------------------------------
Q 011919 175 CEKGDMIAADELMKGMGLIDL----------------------------------------------------------- 195 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~----------------------------------------------------------- 195 (475)
.+.|++++|...|+++...+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998865431
Q ss_pred -------------------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 011919 196 -------------------YPDIITYVSMIKGFCN---AGRLEDACGLFKVMKR-----HGC--------AANLVAYSAL 240 (475)
Q Consensus 196 -------------------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 240 (475)
+.+...+......+.. .|++++|...|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1114455555555554 8999999999999988 311 2245678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 320 (475)
...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998853 448888999999999999999999999998764 346778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987644 56778899999999999999999999998753 2346788888999999999999999999
Q ss_pred HHHHcCCCCCCc----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 401 DIEKIGFLSSVD----SDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++.+..... ++ ...|..+...+.. .|++++|.+.+++++... +.+...+..+...+.+.|++++|.+.++
T Consensus 397 ~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998753211 11 3489999999999 999999999999999887 6778889999999999999999988765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-20 Score=184.25 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=186.9
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... +.+...+..+...+...|+++.|.+.++.+.+.. +.+..++..+..++...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4778888888887776543 2467778888888888899999999988888765 557778888888888889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC------CCCChh-----------------------
Q 011919 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDII----------------------- 200 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~----------------------- 200 (475)
..|+.+.. .|+.. ...+..+...+....|...++++.... ..|+..
T Consensus 114 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88864432 12211 111222222223333344443332210 001100
Q ss_pred -------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 201 -------TYVSMIKGFCN--------AGRLEDACGLFKVMKRHGCAAN-------LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 201 -------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|.+.++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 01111111110 12444555555554443211 1 1123334444445555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.+..
T Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 268 ESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 55442 1334444445555555555555555555554432 223444455555555555555555555555443322
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCchhh
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---SVDSDI 415 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 415 (475)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 23344445555555555555555555554432 1223344444455555555555555555544431000 001111
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 416 HSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 416 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+..+...+.+. |++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22233344444 55555555555555444 344444555555555555555554433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-20 Score=170.57 Aligned_cols=319 Identities=11% Similarity=0.050 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444445555555555555555554432 2234455555555555555555555555554432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
..|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 555555555555555544210 122222222 456667777777777777776642 345666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS----------- 345 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------- 345 (475)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 7777777777777777777766553 335566667777777777777777777777664432 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 346 -SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 346 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
.+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..+|..+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 312 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 33666888999999999999988753 33 2 224456678889999999999999998864 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
...+...|++++|.+.++++++.. |.+......+..+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 999999999999999999999876 556666666666655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-18 Score=162.13 Aligned_cols=318 Identities=10% Similarity=-0.007 Sum_probs=260.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677788888999999999999998865 5578889899999999999999999999988754 3467889999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 174 FCEKGDMIAADELMKGMGLIDLY---PDIITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|++++|.+.++++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998754 2 244445444 578889999999999999998875 44788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------- 310 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------- 310 (475)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999853 56788899999999999999999999999887632 2333332
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 311 ----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 311 ----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999886543 22 335567889999999999999999998763 3367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
...+...|++++|.+.++++.+.. | .+...+..+..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN--E-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHH
Confidence 999999999999999999999865 2 35666666655543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-19 Score=165.51 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=224.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011919 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456667777778888888888888888877654 4456667777778888888888888888887754 3356777788
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 241 LDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888887743 3456678888888888888888888888887764 22455666678888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 011919 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--------VKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 391 (475)
|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. .......+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888876543 56778888888888899999998888887531 12234678888888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHhH
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEEL 466 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 466 (475)
+++|...+++..+.. +.+..+|..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+.
T Consensus 252 ~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 252 YAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchhc
Confidence 999999999988864 2367788889999999999999999999888776 56777777877777 45665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-18 Score=170.92 Aligned_cols=356 Identities=12% Similarity=-0.028 Sum_probs=269.1
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|.+.|....... +.+...+..+...+...|+++.|.+.++.+ .. .|+.. ...+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHH
Confidence 5789999999998876543 346778888899999999999999999743 22 22211 12234444555567788
Q ss_pred HHHHhcccCC------CCCCHh------------------------------hHHHHHHHHHh--------cCChhHHHH
Q 011919 150 WVLRKMPEFD------LRPDTI------------------------------IYNNVIRLFCE--------KGDMIAADE 185 (475)
Q Consensus 150 ~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~--------~g~~~~a~~ 185 (475)
..++.+.... ..|+.. ....+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775531 111111 12222222211 247899999
Q ss_pred HHHHhccCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011919 186 LMKGMGLIDLYPD-------IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 186 ~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
+++++.+.. +.+ ..++..+...+...|++++|...+++..+. .|+...+..+...|...|++++|.+.++
T Consensus 224 ~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 223 234667778888999999999999999987 4568889999999999999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011919 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (475)
++.+.. +.+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 301 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 301 KAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998853 4568889999999999999999999999998864 335678889999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 011919 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-----KPDGLACSVMIRELCLG----------GQVLEGFCLYEDIE 403 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~ 403 (475)
+...+..+...+...|++++|.+.|+++.+... ......+......+... |++++|...++++.
T Consensus 377 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 -LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 566788999999999999999999999876421 11112233444566777 99999999999999
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.. +.+..+|..+...|.+.|++++|.+.|+++++..
T Consensus 456 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 456 ELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 875 2467889999999999999999999999999886
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-19 Score=166.86 Aligned_cols=287 Identities=14% Similarity=0.014 Sum_probs=181.3
Q ss_pred CChhHHHH-HHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011919 178 GDMIAADE-LMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 178 g~~~~a~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5554332210 0123345555555555555555555555555543 22445555555555555566666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST---------------LIKGFCV 318 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 318 (475)
.+.|+++.+.. +.+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 118 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 55555555532 234555555555555556666666655555543211 1111110 2333347
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 319 EGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++++|...++++.+..... +..++..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888887765432 46778888888888899999999888887653 3356788888888888999999999
Q ss_pred HHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCHhHH
Q 011919 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL----------QGPYVDKIVEHLKKSGDEELI 467 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a 467 (475)
.++++.+.. +.+..++..+...|.+.|++++|.+.++++++..... ....+..+..++...|+.+.|
T Consensus 273 ~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 273 AYRRALELQ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999888764 2367788888889999999999999998888754111 267888889999999999988
Q ss_pred hhcccc
Q 011919 468 TNLPKI 473 (475)
Q Consensus 468 ~~l~~~ 473 (475)
..+.+.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-18 Score=160.61 Aligned_cols=294 Identities=9% Similarity=-0.083 Sum_probs=226.5
Q ss_pred ccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011919 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888999999888887654 3455667777788888889999998888887754 4567778888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 206 IKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 206 i~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 88888888 8888999888888764 3356778888888888999999999998888753 34456677788888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCC
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 356 (475)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ......++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999998887763 3456778888888888999999999888887632 12234678888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-HhcCCHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-CRKNHSV 430 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 430 (475)
+++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC---CCchHHHHHHHHHHHHHhCchh
Confidence 999999999888753 2356778888888889999999999999888754 23677788887777 3455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-16 Score=150.10 Aligned_cols=338 Identities=13% Similarity=0.000 Sum_probs=248.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHH----c
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----A 142 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 142 (475)
.++...|...|...... .+...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 56777788877776654 245566666666666 778888888888877765 55666667777777 6
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCC
Q 011919 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGR 214 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 214 (475)
+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888877754 56667777777776 678888888888877654 56677777777776 788
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCC
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGM 286 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 286 (475)
.++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCC
Confidence 888888888887765 56677777777775 678888888888887742 45566666666766 788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 358 (475)
.++|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 888888888877654 445666677777766 78888888888887765 3455666777776655 678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSV 430 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 430 (475)
+|.+.|++..+.| +...+..+-..|.. .+++++|...|++..+.+ +...+..+...|.+ .++++
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 8888888887763 45667777777776 678888888888888765 45677778777777 78888
Q ss_pred HHHHHHHHHHHcC
Q 011919 431 EAAKLARFMLKKR 443 (475)
Q Consensus 431 ~A~~~~~~m~~~~ 443 (475)
+|.+.|++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=161.96 Aligned_cols=293 Identities=13% Similarity=-0.014 Sum_probs=231.6
Q ss_pred HcCCHHHHHH-HHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 141 KARLANEAMW-VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
-.|++++|.+ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578899998 8887665421 1135678889999999999999999999998765 567888999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH---------------HHHHH
Q 011919 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS---------------VIQIF 281 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 281 (475)
+|...|+++.+.. +.+..++..+...|...|++++|.+.++++.... +.+...+.. .+..+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998875 4478899999999999999999999999998853 222222221 23444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998764221 5788999999999999999999999999886533 567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CCchhhHHHHHHHHHhcCCHHHH
Q 011919 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--------SVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.+.|+++.+.. +.+...+..+...|...|++++|...++++.+..... +....+|..+..++...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998753 3457888999999999999999999999988753110 11268899999999999999999
Q ss_pred HHHHHHHH
Q 011919 433 AKLARFML 440 (475)
Q Consensus 433 ~~~~~~m~ 440 (475)
..++++.+
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99876443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=162.81 Aligned_cols=265 Identities=12% Similarity=-0.019 Sum_probs=184.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 011919 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 277 (475)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34446666667777777777777777766653 3356667777777777777777777777776642 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPN-----------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYS 345 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 345 (475)
..+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 777777777777777777766532 21 1223345667788888888888888887765431 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888888888888888888887653 3357788888888888889999988888888864 2357788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 426 KNHSVEAAKLARFMLKKRIW-----------LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.|++++|.+.++++++.... .+...+..+..++...|+.+.+.++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 89999999988888865311 135678888888888898888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=160.74 Aligned_cols=269 Identities=12% Similarity=-0.018 Sum_probs=218.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998765 5678899999999999999999999999998874 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc-H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDCSPN-V----------VTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTI 309 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~ 309 (475)
..|.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.... ++..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999998742 32 2 22334578899999999999999999886422 157889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+...+...|++++|...++++.+.... +..+|..+..+|...|++++|.+.|+++.+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 99999999999999999999999886543 57789999999999999999999999998763 23478899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 390 GQVLEGFCLYEDIEKIGFL---------SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|++++|...++++.+.... +..+..+|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999875311 011367899999999999999988887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-15 Score=148.91 Aligned_cols=403 Identities=10% Similarity=-0.001 Sum_probs=286.2
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011919 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+...+...+..+..++...|..+|..+... ++.+...+...+....+.++++.|..+++.+.+.. |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 344444444433467888999999887653 45678888899999999999999999999998864 68888877775
Q ss_pred H-HHHcCCHHHHHH----HHHhccc-CCCC-CCHhhHHHHHHHHHh---------cCChhHHHHHHHHhccCCCCCChhh
Q 011919 138 L-CEKARLANEAMW----VLRKMPE-FDLR-PDTIIYNNVIRLFCE---------KGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 138 ~-~~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 201 (475)
. ....|+.++|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++..+.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677766655 7776654 2433 356677777776554 6889999999999987311111234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhc----
Q 011919 202 YVSMIKGF-------------CNAGRLEDACGLFKVMK------RHG---CAAN--------LVAYSALLDGICRL---- 247 (475)
Q Consensus 202 ~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~---- 247 (475)
|....... .+.++++.|..+++.+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13455677777776532 211 2443 24555555433322
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHH
Q 011919 248 GSM----ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMK-------EALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 248 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~ 309 (475)
++. +.+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888742 4577888888888775 79987 899999998863233457888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HHH
Q 011919 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR-ELC 387 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~-~~~ 387 (475)
..++..+.+.|++++|..+|+.+++.........|..++..+.+.|++++|.++|++..+. .|+ ...+..... .+.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHH
Confidence 8999999999999999999999998643211357888899899999999999999999875 332 222322221 234
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHhcCCH
Q 011919 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WL--QGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~g~~ 464 (475)
..|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .| ....|...+....+.|+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 6899999999999998864 24678999999999999999999999999998752 22 233788888888999999
Q ss_pred hHHhhccc
Q 011919 465 ELITNLPK 472 (475)
Q Consensus 465 ~~a~~l~~ 472 (475)
+.+..+.+
T Consensus 480 ~~~~~~~~ 487 (530)
T 2ooe_A 480 ASILKVEK 487 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-15 Score=144.68 Aligned_cols=347 Identities=12% Similarity=-0.029 Sum_probs=280.5
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCH
Q 011919 93 SSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 93 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 164 (475)
+...+..+...+.. .++++.|.+.++...+.| +...+..+...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444455555555 788999999999888865 56677778888888 889999999999988754 66
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 011919 165 IIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 165 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777788888888 789999999999988765 56777778888876 789999999999998875 6788
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 237 YSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 237 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888888 89999999999999884 356677778888876 789999999999988765 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 011919 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-----KRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~ 379 (475)
+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|.+.|++..+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 6677777777 889999999999998775 455677788888877 89999999999998875 44566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 380 SVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 380 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|.++|++..+.+ ++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 66777777666 7889999999999875 56788889888888 899999999999999876 467788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011919 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...|.+ .++.++|.+..+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 88888888 7899988876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-17 Score=148.71 Aligned_cols=277 Identities=10% Similarity=-0.057 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344555555666666666666666655433 3345555555556666666666666666655543 22455555555666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IK-GFCVEGNL 322 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~g~~ 322 (475)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS---TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 66666666666666555532 1111122211000 0000001111 11 25566677
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777665432 45667777777777777777777777776543 234566777777777777888888777777
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-----------QGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+.. +.+..+|..+...+.+.|++++|.+.++++++..... +...+..+..++.+.|+.+.|..+.
T Consensus 233 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN---PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7654 2356677777777778888888888887777654221 4667777777888888888777766
Q ss_pred cc
Q 011919 472 KI 473 (475)
Q Consensus 472 ~~ 473 (475)
+.
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 54
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-17 Score=149.87 Aligned_cols=283 Identities=11% Similarity=-0.052 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567777889999999999999999998754 3477889999999999999999999999998765 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH--HHHhcC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKG 285 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 285 (475)
.+...|++++|.+.++++.+.... +...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 999999999999999999986422 22222222000 011111111111 144445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.+.++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 224455555556666666666666666665554322 34556667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++.+.. +.+...+..+...+...|++++|.+.++++.+..... ..+..+|..+..++.+.|++++|.+++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766542 2345666777777777777777777777777653110 004567788888888888888888877
Q ss_pred HHHH
Q 011919 437 RFML 440 (475)
Q Consensus 437 ~~m~ 440 (475)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=142.55 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=133.1
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
-..-.|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34445666666666665544321111234444556666666666666544331 24455556666666666666666
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 218 ACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 218 a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|++.++++...+..| +...+..+...|.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666554323 344455555666666666666666654 23555566666666666666666666666
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 297 MEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 297 m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
+.+.. |+.... ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|.+.+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 65542 332111 1122222333555555555555555422 244555555555555555555555555555432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011919 374 PDGLACSVMIRELCLGGQVLE-GFCLYEDIEKI 405 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 405 (475)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 234455555555555555543 34555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=155.77 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++.+.|.+.++.+ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+++
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4455555555443 12235555555555555555555555331 34445555555555555555555544
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 011919 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (475)
+..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 444332 2334445555555555555555554442 134445555555555555555555555533
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 13555555555555555555555554 1445555555555555555555333222 11122223345
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011919 348 VVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~ 368 (475)
+..|.+.|++++|..+++..+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 555555555555555555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-16 Score=139.71 Aligned_cols=252 Identities=11% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDI--ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
-....|+++.|+..+++..... |+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445667777776666654322 222 3344456666677777666655543 1244556666666666666777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 330 (475)
++|++.++++...+. .|.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776655310 123444555555666677777777776665 3455666666666777777777777777
Q ss_pred HHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 331 KVVAGGSVSSGGCY---SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 331 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+.+.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 766554 222111 112233334466777777777766542 3455666666666677777777777777766654
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011919 408 LSSVDSDIHSVLLLGLCRKNHSVE-AAKLARFMLKKR 443 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 443 (475)
+.+..++..++..+...|+.++ +.++++++++..
T Consensus 231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2355666666666666666654 456666666665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-19 Score=173.58 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=110.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
.-..||+++|++||+.|++++|.++|++|.+.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888887776421 2467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011919 311 TLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------GLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li 383 (475)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888887 467888888888888888888888887655443 333333333 2334443 33444455
Q ss_pred HHHHhcC
Q 011919 384 RELCLGG 390 (475)
Q Consensus 384 ~~~~~~g 390 (475)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=172.27 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhcc---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 239 (475)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445777777777777777777777766543 46777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 011919 240 LLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN------RVTISTL 312 (475)
Q Consensus 240 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l 312 (475)
+|.++++.|+. ++|.++|++|.+. |+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 77777777763 6677777777774 4577777777777554442 333333333 2233333 3344455
Q ss_pred HHHHHhcC
Q 011919 313 IKGFCVEG 320 (475)
Q Consensus 313 i~~~~~~g 320 (475)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-14 Score=141.93 Aligned_cols=371 Identities=11% Similarity=-0.001 Sum_probs=269.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011919 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 171 (475)
.+...+..++.. ...++++.|..+++.+.+.. |-+...|...+..+.+.|++++|..+|+++.... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 467778788874 66899999999999998864 6678899999999999999999999999998864 6887887777
Q ss_pred HHH-HhcCChhHHHH----HHHHhcc-CCCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCcCHH
Q 011919 172 RLF-CEKGDMIAADE----LMKGMGL-IDLY-PDIITYVSMIKGFCN---------AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 172 ~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777765 6666543 2433 356678777776654 688999999999998832111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcCC-CCCCc--------HHHHHHHHHHHHhc---
Q 011919 236 AYSALLDGI-------------CRLGSMERALELLGEME------KEGG-DCSPN--------VVTYTSVIQIFCGK--- 284 (475)
Q Consensus 236 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~~-~~~~~--------~~~~~~li~~~~~~--- 284 (475)
.|....... .+.+++..|..++.++. +... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 13456777877776632 2111 12443 24566555443322
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHH
Q 011919 285 -GMM----KEALGILDRMEALGCAPNRVTISTLIKGFCV-------EGNLD-------EAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 285 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
++. +++..+|++..... +.+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 233 47788998888752 3467778888777775 69987 8999999998632233578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG- 422 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~- 422 (475)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|+++|++..+.. +.+...|...+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHH
Confidence 9999999999999999999999975 554 2 578888888889999999999999999853 2233334333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
+...|++++|.++|++.++.. |.++..+..++..+.+.|+.+.|..+.+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 346899999999999999876 66788999999999999999999887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=153.22 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=136.1
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+.|++++|.++++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778999999999943 34899999999999999999999965 3577899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 88877764 4567889999999999999999998773 267779999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011919 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 26788999999999999999996655442 23444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHH
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK--NHSVEAAKLARFMLKKRIWL------QGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 452 (475)
.++..|.+.|++++|..+++...... +-...+|+.+...|++- ++..+.++.|.. ..++++ +...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 78899999999999999999988754 23778899998888764 345555554431 123333 567889
Q ss_pred HHHHHHHhcCCHhHHhhc
Q 011919 453 KIVEHLKKSGDEELITNL 470 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l 470 (475)
.+.-.|.+.|+++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999987653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-13 Score=142.07 Aligned_cols=345 Identities=14% Similarity=0.084 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011919 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSS-YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..+|+.+....+.. ..+.+..++..+......+. |..+...-+.++....+. +.....+.++..... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34455554444443 45555555555555543332 333333333333333222 334444444433211 1 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
-+...+...|++++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 245567778888888888887632 2222233332 667888888888765 24778888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|...|.+. -|...|..++.+|.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHH
Confidence 999998888653 377788888899999999999999888777632 3333344588888888888754443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011919 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 2 345566777888888899999999999885 24888999999999999999988876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
.+..+|..+-.+|...|++..|......+.. +...+..++..|.+.|.+++|+.+++..+... +-....|..
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 3557888888888888888888876654322 45667788889999999999999998887655 445555655
Q ss_pred HHHHHHhcC
Q 011919 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+..++.+..
T Consensus 1320 LaiLyaKy~ 1328 (1630)
T 1xi4_A 1320 LAILYSKFK 1328 (1630)
T ss_pred HHHHHHhCC
Confidence 555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-14 Score=137.67 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=237.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccC----
Q 011919 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 158 (475)
......|+.+..+....|+.++|++.++...+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667888888999999999999998876542 12334568888999999999999999998876541
Q ss_pred -C--CCCCHhhHHHHHHHHHhc--CChhHHHHHHHHhccCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 011919 159 -D--LRPDTIIYNNVIRLFCEK--GDMIAADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 159 -~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+ ......++..+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112345666666566554 57899999999988754 3345555555444 345677888999999888764
Q ss_pred CcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 231 AANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 3356666666655554 467889999999988753 4667788899999999999999999999988763 2345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVE-------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 307 ~~~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
..+..+..+|... +..+.|...++...+.+.. +..++..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5566555554322 3356778888887765533 4566888999999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 368 LASGVKPDGL--ACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 368 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+....+... .+..+.. .....|+.++|+..+++..+... +.... .+....+.++++..+...
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~---------~~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREK---------EKMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHH---------HHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHH---------HHHHHHHHHHHHHHHHhC-
Confidence 8764333221 1222222 23567899999999998887532 11111 111223344444444444
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|.++.++..+..++...|++++|.+..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555566666666666666666655544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-12 Score=134.66 Aligned_cols=309 Identities=9% Similarity=-0.031 Sum_probs=165.1
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.+++++|.++.+.. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.++
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445554444432 23445555555555555555555555442 2444455555555555555555555
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+.
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----- 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----- 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----
Confidence 55444332 22222223555555555555322221 1 2234444455555555555555555555431
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011919 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..
T Consensus 1223 ------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLee 1285 (1630)
T 1xi4_A 1223 ------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 1285 (1630)
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHH
Confidence 3555555555555555555555544 1345555555555555555555554432 2224455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHHH
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~li~ 421 (475)
++..|.+.|.+++|+.+++..+... +-....|+-+...+++. ++++..+.++...+..-.|+ .+...|..++.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 8888888888888888887776432 22234555555555543 33333333333334433332 25677888888
Q ss_pred HHHhcCCHHHHHHH-------------HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 422 GLCRKNHSVEAAKL-------------ARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 422 ~~~~~g~~~~A~~~-------------~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
.|.+.|+++.|... |++.+.+ ..++..|...+..|...+
T Consensus 1364 LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 88899999888732 2222211 456677777777776666
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-15 Score=129.18 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 275 (475)
..+..+...+...|++++|...|++..+.. .+..++..+..+|...|++++|.+.++++.+......++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666554 455666666666666666666666666665532100111 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011919 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666677777777777776666542 332 2355556777777777777665422 3456777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011919 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...+.+.|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877653 2356777777778888888888888888887764 23567788888888888888888888
Q ss_pred HHHHHHcC
Q 011919 436 ARFMLKKR 443 (475)
Q Consensus 436 ~~~m~~~~ 443 (475)
+++.++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-14 Score=125.51 Aligned_cols=222 Identities=15% Similarity=0.048 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CCC----hhhHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL--YPD----IITYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 204 (475)
.+..+...+...|++++|...|++..+.. .+...|..+..++...|++++|.+.+++...... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444455555555555555544433 3444455555555555555555555554433210 001 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+...+...|++++|...|++..+.. |+. ..+.+.|++++|.+.++++.... +.+...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHh
Confidence 4444444455555554444444431 221 12333344444444444444421 12233344444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...|..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444332 113333444444444444444444444444433211 2333444444444444444444444
Q ss_pred HHHH
Q 011919 365 SKML 368 (475)
Q Consensus 365 ~~m~ 368 (475)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=123.17 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+.+.|++++|...|++..+.. |.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3344444444444444444444444444421 2333444444444444444444444444444332 11233344444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011919 314 KGFCVE-----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 314 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.++... |++++|...+++.++..+. +...+..+..+|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 6666666666666654432 34556666666666666666666666666654 455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
..++...|++++|...+++..+.. |.+...+..+...+.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666653 235566666666666667776666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=123.71 Aligned_cols=197 Identities=17% Similarity=0.066 Sum_probs=91.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344445555555555555555555555554433 3344455555555555555555555555555443 22344555555
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 242 DGICRL-----------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 242 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
..|.+. |++++|...+++..+.. |.+...|..+..++...|++++|+..|++..+.. .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 555555 55555555555555432 2234445555555555555555555555555443 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
.+..++...|++++|...|+...+..+. +...+..+...+...|++++|.+.+++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555443321 334444445555555555555555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-13 Score=130.63 Aligned_cols=353 Identities=11% Similarity=-0.060 Sum_probs=237.8
Q ss_pred CCCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CccCHHhHHHH
Q 011919 70 FPSQSQMGIRFFIWAALQ-------SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----G---CVVSVKMMKVI 135 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l 135 (475)
..++.+.|+..|..+... ..-+....+|..+..++...|+++.|...++...+. . ......++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 378888998887665321 122345678888999999999999999988876542 1 11234566655
Q ss_pred HHHHHH--cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 136 FNLCEK--ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL---FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 136 i~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
..++.. .+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 555554 357999999999988754 2345555555544 445678889999998887654 445666666655554
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--
Q 011919 211 N----AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-- 284 (475)
Q Consensus 211 ~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 284 (475)
. .|+.++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.. |.+..++..+..+|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH
Confidence 4 467889999999988765 4478889999999999999999999999998853 44566677666655432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHH
Q 011919 285 -----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYS 345 (475)
Q Consensus 285 -----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 345 (475)
+..++|...++...+.. +.+...+..+...+...|++++|...|++.++....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23567888888777653 3345677888999999999999999999999876544321 223
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 346 SLVV-ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 346 ~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
.+.. .+...|+.++|+..|.+..+. .|+...... ....+.++++...+.. +.+..+|..+...|.
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~---p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN---GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC---C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 3322 244779999999999999875 455332222 2234455666666654 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 011919 425 RKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|++.|++.++.+
T Consensus 442 ~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHCC-------------
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-13 Score=117.41 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence 344444444555555555555555554421 33444445555555 555555555555555421 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011919 276 SVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 276 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555443 34445555555555 555555655555555544 23444555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 348 VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 348 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----CHHHHHHH
Confidence 555555 566666666666665543 33445555555555 666666666666666543 23455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
...|.+ .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666 666666666666666655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=122.43 Aligned_cols=252 Identities=12% Similarity=0.025 Sum_probs=147.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+......+...|++++|+..|++..+... .+...+..+...|...|++++|.+.++++.+...........|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34444555566666666666666655431 23335555556666666666666666666552111111123355666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 224456666666677777777777777666655322 3455555552333445777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CCC----chhhHHHHHHHHHhcCCHHHHH
Q 011919 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL-SSV----DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+.|+++.+.. +.+...+..+...+...|+ .++|...+++..+.... |.+ ...+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777642 2235556666666666666 77777777777664211 110 1256777888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 434 KLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 434 ~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+.++++++.. |.++.....+....
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHC---
T ss_pred HHHHHHHhcC-ccHHHHHHHhhhhh
Confidence 8888888876 55555555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-13 Score=117.67 Aligned_cols=201 Identities=14% Similarity=0.038 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 444555555555666666666666555532 2344555555556666666666666666555442 224455555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
.+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666665522222 33455666666666677777777776666542 223556666666667777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777766643 1245566666667777777777777777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-13 Score=116.01 Aligned_cols=200 Identities=10% Similarity=-0.038 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444445555544444444322 2233444444444444444444444444444432 12344444444444
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 245 CRL-GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
... |++++|.+.++++.+. ...+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 444 5555555555444441 0111223344444444444444444444444444331 112333444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
+|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444333221123333333334444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-13 Score=116.99 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=114.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455556666666666666666666665433 3345556666666666666666666666665543 2245566666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
|...|++++|.++++++.+. ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666551 0112344555556666666666666666666655542 223445555555566666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665554332 23444555555555566666666666555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-13 Score=121.17 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIK 207 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~ 207 (475)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..... ++.. .|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 3334445555566666666666555433 1233455555555555666666666655555421 2211 2455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+.. +.+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 1234455555555555555555555555554421 23334444444122223355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVV 333 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~ 333 (475)
++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++..
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55555555554432 1123333444444444444 444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-14 Score=121.27 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3445555555666666666666666665532 3345555556666666666666666666655542 22455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654422 44556666677777777777777777766542 234566666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+...+..
T Consensus 177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 7777777777654 2256677777777777788888888877777765 444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-12 Score=115.17 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..++..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6678888999999999999999999999983 356778888999999 999999999999999876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011919 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999999876 66788889999999 999999999999999875 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 381 VMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.+. ...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 77778887 899999999999999875 55778889999999 9999999999999998862 66788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011919 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...+.+ .|+.++|.+..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHH
Confidence 88899998 9999999877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=126.72 Aligned_cols=196 Identities=9% Similarity=-0.107 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---ccccHHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444321 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|...++++.+. .|+.......+..+...|++++|...++........ +...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHH
Confidence 4444444444444444432 122222222222333344444454444444332211 11112 2333444444444555
Q ss_pred HHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 362 KLFSKMLASGVK--P-DGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 362 ~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.+.+..+.... | +...+..+...+...|++++|...+++..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 555444322100 0 0234444555555555555555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-12 Score=112.43 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3344445555555555555555555554432 2334445555555555555555555555554432 22344455555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011919 314 KGFCVE-GNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 314 ~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
..+... |++++|...++.+.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 56666666555555521112 23445555666666666666666666665532 1234555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++|...++++.+... ..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 6666666666665431 0244555555556666666666666666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=126.04 Aligned_cols=245 Identities=10% Similarity=-0.081 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 143 RLANEAMWVLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
|++++|+..|+++.+... +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443211 0123344444455555555555555555544432 233444555555555555555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 220 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..|++..+.. +.+..++..+...|.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555432 1234455555555555555555555555555431 2222222233333444555555555544443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 300 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
.. +++...+ .++..+...++.++|...++......... +...+..+...|...|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 1222222 24444445555555555555554332110 1344555666666666666666666666643 2321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 112233444555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-13 Score=125.29 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=111.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...|+.+..++.+.|++++|++.+++..... +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3456666666666677777777777666543 3445566666666666664 66666666666665422 5566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV-EGN 321 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~ 321 (475)
++.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++.+... -+...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 6666666666666666666643 34556666666666666666666666666665432 244555555555555 333
Q ss_pred HHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH
Q 011919 322 LDEA-----YQLIDKVVAGGSVSSGGCYSSLVVELVRTK--RLKEAEKLFSKM 367 (475)
Q Consensus 322 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 367 (475)
.++| +..+++.+..... +...|+.+...+...| ++++|++.+.++
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 3444 2444444443322 2334444444444444 344444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-13 Score=124.15 Aligned_cols=233 Identities=11% Similarity=-0.001 Sum_probs=169.9
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
+...|..+..++.+.|++++|+..|++..+.. +-+...|+.+..++...|+ +++|++.|++..... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34566677777888888888888888887654 3466778888888888886 888888888887755 45677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cC
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KG 285 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 285 (475)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887653 377788888888888888888888888888753 4567778888888887 55
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---
Q 011919 286 MMKEA-----LGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--- 355 (475)
Q Consensus 286 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 355 (475)
..++| +..+++..... +-+...|..+...+...| ++++|.+.+.++ +.+ ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777776653 224567777777777777 578888888777 322 234566777777777653
Q ss_pred ------CHHHHHHHHHHH-HH
Q 011919 356 ------RLKEAEKLFSKM-LA 369 (475)
Q Consensus 356 ------~~~~a~~~~~~m-~~ 369 (475)
..++|.++|+++ .+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 246777777776 43
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-13 Score=117.96 Aligned_cols=196 Identities=16% Similarity=0.115 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444455555555554444322 2234444444444445555555555554444432 123444444445555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555444421 2233444444444444444554444444444331 12333344444444444444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
...++++.+.... +..++..+...|...|++++|.+.++++.
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444333211 23334444444444444444444444444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=129.02 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV--K---PDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~ 377 (475)
.+..+...+...|++++|...+++..+.... . ...++..+...|...|++++|.+.+++..+... . ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555556666666666666666665442110 0 122566677777777777777777776654210 0 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+.+++.++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5666677777788888888887776653110 01123467777788888888888888888877553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=128.28 Aligned_cols=299 Identities=12% Similarity=0.036 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLV 235 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 235 (475)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554432 111 134445555555555555555555544321 111 1133
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALG 292 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~ 292 (475)
++..+...|...|++++|...+++..+..... .....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45555556666666666666665554421000 0012345555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHH
Q 011919 293 ILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 293 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.+++..+. +..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235566667777777777777777776542110 1 12357777778888888888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHH
Q 011919 363 LFSKMLAS----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 363 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
.+++..+. +-.+. ..++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776642 11111 346667777788888888888888877653110 11124567778888888888888888
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 011919 435 LARFMLKK----RI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 435 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+++.++. +. +....++..+...+...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887654 11 12234566677777777765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=125.27 Aligned_cols=340 Identities=11% Similarity=0.028 Sum_probs=212.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC----
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP---SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR---- 143 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 143 (475)
.++.+.|.+.|.-.... +. ...+..+...+...|++ ++|.+.++...+. +...+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-GY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-TC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 56777788777776544 22 22233344444445666 7888887776643 4555655666444444
Q ss_pred -CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 144 -LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI---AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 144 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 219 (475)
++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.++++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 67788888888877553 336666777777665433 3444444444333 3556666777777777554444
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHH
Q 011919 220 GLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALG 292 (475)
Q Consensus 220 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~ 292 (475)
.....+.+.-...+...+..|...|.+.| +.++|++.|++..+.+ +++...+..+...|... +++++|+.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 43332222111223337788888888888 8999999999998865 46666656677777554 68999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHH
Q 011919 293 ILDRMEALGCAPNRVTISTLIKG-F--CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-----RLKEAEKLF 364 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~ 364 (475)
.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 998887 43 44555666555 3 46889999999999998877 5566777777776 55 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHH
Q 011919 365 SKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLA 436 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 436 (475)
++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......|...|.. ..+.++|..++
T Consensus 311 ~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 311 EKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 8876 3 355666666666655 338999999999998876 34556777777764 45899999999
Q ss_pred HHHHHcCC
Q 011919 437 RFMLKKRI 444 (475)
Q Consensus 437 ~~m~~~~~ 444 (475)
+...+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99988883
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-13 Score=126.97 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCCcHHH
Q 011919 201 TYVSMIKGFCNAG---RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL----GSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|.++|++.. .+ +...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHH
Confidence 4444444444444 4444555554444444 22333333444444333 34445555554444 21 2223
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCChhhHH
Q 011919 274 YTSVIQI-F--CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG-----NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 274 ~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+..+... + ...+++++|+..|++..+.| +...+..|-..|. .| ++++|...|++.. .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 3333333 2 23444555555554444443 3333333333333 22 4445555444444 21 223333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011919 346 SLVVELVR----TKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 346 ~li~~~~~----~g~~~~a~~~~~~m~~~~ 371 (475)
.|...|.. ..++++|.+.|++..+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 34333333 124445555554444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-13 Score=121.81 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=155.3
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALL 241 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll 241 (475)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444555555555555444332 111 233444445555555555555555443321 101 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011919 242 DGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 298 (475)
..|...|++++|.+.+++..+..... .....++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56666666666666665544321000 0012245555566666666 666666665543
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 299 AL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 299 ~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
.. +..+ ....+..+...+...|++++|...+++..+... .....++..+...+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1111 133566666777777888888887777654311 1112367777888888888888888888776
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 369 ASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 369 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+... ..+ ..++..+...+...|++++|...+++..+... .+.....++..+...|.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4210 111 45667777788889999999998888765411 011124577788888999999999999999888
Q ss_pred HcC
Q 011919 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-13 Score=126.16 Aligned_cols=266 Identities=15% Similarity=0.086 Sum_probs=161.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQ 279 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~ 279 (475)
..+...|++++|...|++..+.+.. +. ..+..+...|...|++++|.+.+++..+.. ...+....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3444444444444444444443211 11 234444444445555555555544443310 000112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC--
Q 011919 280 IFCGKGMMKEALGILDRMEAL----GC-APNRVTISTLIKGFCVEGN-----------------LDEAYQLIDKVVAG-- 335 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~~~~-- 335 (475)
.|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544322 10 1123345555666666666 66666666665432
Q ss_pred --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 336 --GS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 336 --~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 11 11234688888999999999999999998875311 112 23677888899999999999999998876421
Q ss_pred C---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 408 L---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-----WLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 408 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
. +.....++..+...+...|++++|.+.+++.+.... ......+..+...+.+.|++++|.+.++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 001256788899999999999999999999886521 12234778899999999999999887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-13 Score=125.16 Aligned_cols=301 Identities=14% Similarity=0.006 Sum_probs=198.3
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC-CC
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLY-PD 198 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 198 (475)
....+......+...|++++|...|++..+.+. .+ ...+..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344445555667777777777777777766431 12 245667777777777777777777765331 111 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-AN----LVAYSALLDGICRLGS--------------------MERA 253 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~--------------------~~~a 253 (475)
..++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 445666777777888888888877766543100 11 3467777788888888 8888
Q ss_pred HHHHHHHHhcC--C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011919 254 LELLGEMEKEG--G-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APN----RVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 254 ~~~~~~~~~~~--~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 325 (475)
.+.+++..... . ..+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88887765420 0 0112244677778888888999999888887764210 111 23677788888899999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011919 326 YQLIDKVVAGG----SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 395 (475)
...+++..... ..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988876431 111 145678888889999999999999988765311 111 45677788888899999999
Q ss_pred HHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHH
Q 011919 396 FCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 396 ~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.+.+++..+. +.. +....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhH
Confidence 9999987754 211 123556777777777777653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=120.80 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GCA 303 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 303 (475)
.++..+...|...|++++|...++++.... ...+....++..+...|...|++++|...+++..+. +..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444445555555555444443310 000122334444555555555555555555554432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 011919 304 P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----- 370 (475)
Q Consensus 304 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 370 (475)
| ....+..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2334455555566666666666666655442 1111 2345666666667777777777777666542
Q ss_pred --CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 371 --GVKPDGL-------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 371 --~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
...+... .+..+...+...+.+.++...++...... +....++..+...|.+.|++++|.+++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS---PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------C---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11222222334455556666666665532 23667888899999999999999999988876
Q ss_pred c
Q 011919 442 K 442 (475)
Q Consensus 442 ~ 442 (475)
.
T Consensus 307 l 307 (311)
T 3nf1_A 307 S 307 (311)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-11 Score=108.43 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=116.8
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-------KGDM-------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 3455566666655542 3554 6666666666552112344456666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH-hcCCHH
Q 011919 212 AGRLEDACGLFKVMKRHGCAAN-LV-AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 288 (475)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666654 222 22 56666666666666666666666666532 223333332222211 246666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVS--SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
+|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..+... ..| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666555432 2234455555555555566666666666655542 222 23445555555555566666666655
Q ss_pred HHHH
Q 011919 366 KMLA 369 (475)
Q Consensus 366 ~m~~ 369 (475)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-11 Score=106.36 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGIC-------RLGSM-------ERALELLGEMEK-EGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 280 (475)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHH
Confidence 45555666555532 234555555555543 23554 666666666665 11 2344566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCH
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPN-RV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 357 (475)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.+.. +...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 66666666666666666653 332 22 5666666666667777777777766664432 2333333222211 25677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++|.++|++..+.. +-+...|..++..+.+.|++++|+.+|++..+.. ..|......|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666542 1245566666666667777777777777777653 222124556666666666777777777777
Q ss_pred HHHHHcC
Q 011919 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+++++..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-11 Score=113.12 Aligned_cols=299 Identities=8% Similarity=-0.014 Sum_probs=199.8
Q ss_pred HHHHcCCHHHHHHHHHhcccC--CC--CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHhccCCCCCChh
Q 011919 138 LCEKARLANEAMWVLRKMPEF--DL--RPDTIIYNNVIRLF--CEKGDMIAAD-----------ELMKGMGLIDLYPDII 200 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~~~ 200 (475)
.+.+.+++++|..+++++.+. .+ .++...|-.++..- .-.+..+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345677788888877776542 22 22333333333321 1122333333 5555554321 1111
Q ss_pred h------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 011919 201 T------YVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-- 267 (475)
Q Consensus 201 ~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 267 (475)
. +......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.....
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 222455677889999999999988764 1111 34678888899999999999999998877531111
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C
Q 011919 268 --SPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----G 335 (475)
Q Consensus 268 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~ 335 (475)
+....+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112456788888999999999999999887643 1111 124677888899999999999999999877 3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 011919 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~ 408 (475)
.......++..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 31334667888999999999999999999988753 111112335566677788888 66676666655 322
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
| .....+..+...|...|++++|.+.+++.++.
T Consensus 336 ~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 A-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 24567888999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=117.37 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-Chh
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEAL----GCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SGG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~ 342 (475)
++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++...... .+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444555555555555555555544321 100 0122445555555666666666666655543210 00 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++..+...|...|++++|.+.+++..+. +-. ....++..+...+...|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4556666666677777776666665532 100 11235556666667777777777777766654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-12 Score=120.62 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 444455555555555555 55555555554432 223444555555555555555555555555443 233444455
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 011919 312 LIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKMLASGVK- 373 (475)
Q Consensus 312 li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~- 373 (475)
+...+... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 5566666666665554322 345555566666655 6666666666666654210
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 374 -PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 374 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
-+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 255666666666666777777777777666653 224556666666666666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=114.63 Aligned_cols=298 Identities=7% Similarity=-0.083 Sum_probs=204.5
Q ss_pred HHhcCChhHHHHHHHHhccC--CCCCC--hhhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcC---
Q 011919 174 FCEKGDMIAADELMKGMGLI--DLYPD--IITYVSMIKG--FCNAGRLEDAC-----------GLFKVMKRHGCAAN--- 233 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~g~~~~--- 233 (475)
+.+.+++++|..+++++.+. .+..| ...|-.++.. ....++.+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999988552 22223 3333444332 12233344444 66666554311111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----
Q 011919 234 -LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-AP---- 304 (475)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p---- 304 (475)
...+......+...|++++|.+.+++..+.....+. ...++..+...|...|++++|+..+++..+.-. .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566788899999999999999873111111 346788899999999999999999988764310 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 011919 305 -NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV----S-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GV-K 373 (475)
Q Consensus 305 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~ 373 (475)
...++..+...|...|++++|...+++..+.... + ...++..+...|...|++++|.+.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2356788888999999999999999988753211 1 1247888999999999999999999998862 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh
Q 011919 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL--SSVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~ 448 (475)
....++..+...+...|++++|...+++..+.... .+.....+..+...+...|+ +++|+.++++. ...+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence 23567888889999999999999999988764210 01123336778888888998 77777777665 1212334
Q ss_pred hhHHHHHHHHHhcCCHhHHhhcccc
Q 011919 449 PYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
..+..+...+.+.|+++.|.+..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5677899999999999999877653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=118.28 Aligned_cols=215 Identities=11% Similarity=-0.011 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667777777776632 45788899999999999999 99999999998764 3357889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 011919 328 LIDKVVAGGSVSSGGCYSSLVVELVRT---------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--------G 390 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 390 (475)
.|++..+.. |+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999999876 5568899999999999 99999999999999763 33578888888899888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
++++|...|++..+.......+...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|+.++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999742101478899999999999999999999999999987 67778889999999999999888754
Q ss_pred c
Q 011919 471 P 471 (475)
Q Consensus 471 ~ 471 (475)
.
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-11 Score=98.72 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.+|..+...+...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHH
Confidence 344444444444444444444444444432 1134444444444444444444444444444321 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011919 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (475)
.+...++++.+...+.+..... +.+...+..+...+.+.|++++|++.|++..+.+.. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4444444444444444444331 123334444444444444444444444444443321 33344444444555555555
Q ss_pred HHHHHHHHHH
Q 011919 360 AEKLFSKMLA 369 (475)
Q Consensus 360 a~~~~~~m~~ 369 (475)
|.+.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-11 Score=98.95 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=84.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555554433 3344445555555555555555555555554432 123444444555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011919 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
.+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555554432 2344445555555555555555555555555432 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 011919 323 DEAYQLIDKVVA 334 (475)
Q Consensus 323 ~~a~~~~~~~~~ 334 (475)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=112.10 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI-------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G-C 230 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~ 230 (475)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444445555555555555555544331 11222334444555555555555555555554432 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+....++..+...|...|++++|.+.++++.+.. ...+.....+..+...+...|++++|.+++++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555555556666666666555554420 001122344555555666666666666666555442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 011919 301 -GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-------GSVSSG-------GCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 301 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
+..| ...++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2234555556666666666666666665532 111111 11222222233334444445555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....... ..+..++..+...|...|++++|.+.+++..+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5544321 223456666777777777888777777776653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-09 Score=104.46 Aligned_cols=406 Identities=11% Similarity=0.007 Sum_probs=263.6
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CccCHHh
Q 011919 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN---PSIIIDVVEAYKEEG-CVVSVKM 131 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 131 (475)
.+...+...++.+ ..+....+..+|..+... ++.+...+...+..-...++ .+.+..+|+...... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4677777777765 345666777777776543 55677777777877777777 888999998887754 2478888
Q ss_pred HHHHHHHHHHcCCH--------HHHHHHHHhccc-CCC-CC-CHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011919 132 MKVIFNLCEKARLA--------NEAMWVLRKMPE-FDL-RP-DTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 132 ~~~li~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~ 191 (475)
|..-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+..+|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766665543 334467776553 354 34 4467777766543 2345677888888887
Q ss_pred cCCCCCChhhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---------------c-----C---
Q 011919 192 LIDLYPDIITYVSMIKGFCNAGR-------------LEDACGLFKVMKR--HGCA---------------A-----N--- 233 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~-------------~~~a~~~~~~m~~--~g~~---------------~-----~--- 233 (475)
......-..+|......-...+. ++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 52211122344333222211111 2233344443321 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCC
Q 011919 234 LVAYSALLDGICRLG-------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-GILDRMEALGCAPN 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 305 (475)
...|...+..--..+ ..+.+..+|+++... ++-....|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333322 123456678888764 3556778888888888889988997 999998865 4456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSS------------GGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
...+...+....+.|++++|.++|+.++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667778888889999999999999987631 0121 235777788888889999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 365 SKMLAS-GVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 365 ~~m~~~-~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+. + .+....|...+..-.+ .++.+.|.++|+...+.- | .+...|...+......|+.+.|..+|++.+..
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--A-TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999876 2 1222333322222223 356999999999998863 2 35677788888888899999999999999887
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 443 RIW--LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ -....|...++.-.+.|+.+.+.++.+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 244578888888899999998888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-10 Score=106.09 Aligned_cols=232 Identities=9% Similarity=-0.020 Sum_probs=168.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---C-CcHHHHH
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGC-AA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC---S-PNVVTYT 275 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~ 275 (475)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+..... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556788999999999998876421 12 24577888889999999999999998876531111 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 011919 276 SVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----GGSVSSGGCYS 345 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 345 (475)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+++..+ ..... ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 8888999999999999999887642 1111 234677788889999999999999999877 44333 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGV---KPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.+...|.+.|++++|.+.+++..+... .|. ...+..+...+...++ +++|..++++ .+..+ .....+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~-~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHA-YIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChh-HHHHHHHH
Confidence 899999999999999999999886321 122 2345555556667777 6667666665 32222 23456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+...|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-10 Score=104.04 Aligned_cols=298 Identities=11% Similarity=0.033 Sum_probs=187.2
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCC----hhhHHHHH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPD----IITYVSMI 206 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li 206 (475)
...+...|++++|...+++........+. ..++.+...+...|++++|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556678888888888776654322222 1455666777788888888888877654210 111 12355667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRH----GCA--A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788888888888888876653 221 2 2345666778888889999999988887764221111 23456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPN--RVTIS----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li 348 (475)
...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888888999999998888764311111 11111 233446788999999998888765443211 22456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 349 VELVRTKRLKEAEKLFSKMLAS----GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
..+...|++++|.+.+++..+. |..++. ..+..+..++...|+.++|...+++..+... .. ..+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~----~~----g~~~~~ 332 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN----RT----GFISHF 332 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HH----CCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----cc----cHHHHH
Confidence 8888889999999888877542 222222 2455566677888999999988888776421 00 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...| +....+++.+....
T Consensus 333 ~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTT
T ss_pred HHcc--HHHHHHHHHHHhCC
Confidence 3444 45566666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-10 Score=104.60 Aligned_cols=298 Identities=12% Similarity=-0.005 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AAN----LVAY 237 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~ 237 (475)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778999999999999877644222222 456677788899999999999998765311 112 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEG--GDCS--P-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA--P--NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 308 (475)
..+...+...|++++|...+++..+.. .+.+ | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 677888999999999999999886531 1111 2 3455677888899999999999999988754221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYS-----SLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLAC 379 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 379 (475)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++..+....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777888899999999999999988753211111 1122 233457799999999999998875432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CCh
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQG 448 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~ 448 (475)
..+...+...|++++|...+++..+.... +.....++..+...+...|+.++|.+.+++.+.. |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 66778889999999999999988654211 1011236777788889999999999999888753 221 112
Q ss_pred hhHHHHHHHHHhcCCH
Q 011919 449 PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~ 464 (475)
.....++..+...+..
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 2345566666666665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-10 Score=95.34 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555666666666666655432 2344555555555566666666666665554432 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555442 2244555555555555555555555555555432 23344455555555555555555
Q ss_pred HHHHHHHH
Q 011919 291 LGILDRME 298 (475)
Q Consensus 291 ~~~~~~m~ 298 (475)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-10 Score=106.39 Aligned_cols=232 Identities=10% Similarity=-0.074 Sum_probs=171.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCS---PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC-AP-NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p-~~~~ 308 (475)
......+...|++++|...|++..+.....+ ....++..+...|...|++++|...+++..+. +. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567889999999999999886421111 13457788899999999999999999887642 11 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAG----GSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 378 (475)
++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .. .....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 778888999999999999999988753 111 1235688899999999999999999999886 42 223667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCChhhHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRI-WLQGPYVD 452 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~ 452 (475)
+..+...+.+.|++++|...+++..+..... +.....+..+...+...|+ +++|+..+++ .+. +.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888889999999999999999998753221 1123445666666777788 7777777766 222 23334667
Q ss_pred HHHHHHHhcCCHhHHhhcccc
Q 011919 453 KIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.+...|.+.|+++.|.+..+.
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999999876643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-08 Score=99.78 Aligned_cols=376 Identities=9% Similarity=-0.006 Sum_probs=247.8
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-cc-CHHhHHHHHHHHH--
Q 011919 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP--------SIIIDVVEAYKE-EGC-VV-SVKMMKVIFNLCE-- 140 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~-- 140 (475)
...+..+|..........|++..+...+....+.++. +.+.++|+.... .|. .+ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 6777788877755432347888888888877665543 345567776553 455 44 4577877776544
Q ss_pred -------HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC-------------ChhHHHHHHHHhcc--CCC---
Q 011919 141 -------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG-------------DMIAADELMKGMGL--IDL--- 195 (475)
Q Consensus 141 -------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------------~~~~a~~~~~~~~~--~~~--- 195 (475)
..++++.+..+|++........-..+|.....---..+ +++.|...+.++.. .++
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 23457889999999986322112234433222111111 12233344433211 011
Q ss_pred -C-----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 196 -Y-----------P--D------IITYVSMIKGFCNAG-------RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 196 -~-----------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
+ | + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 1 0 123444444332222 123456788888775 3447888888888889999
Q ss_pred ChHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011919 249 SMERAL-ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---------CAPN------------R 306 (475)
Q Consensus 249 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~ 306 (475)
+.++|. ++|++.... +|.+...|-..+...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999997 999999874 35677778888888999999999999999987641 0132 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
..|...++...+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+..++. ..-+...+...+.-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 357777888888899999999999998861111233343333333343 4589999999999876 23355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
....|+.+.|+.+|+........+......|...+..-.+.|+.+.+.++.+++.+.- |+......+.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 7888999999999999998653222345788889888889999999999999999886 34344444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-10 Score=93.81 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011919 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666677777777777777777776543 3456666777777777777777777777776653 33566666777777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766642 3455566666666667777777777776666543 2344555666666666666666
Q ss_pred HHHHHHHHHh
Q 011919 325 AYQLIDKVVA 334 (475)
Q Consensus 325 a~~~~~~~~~ 334 (475)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8.6e-11 Score=104.68 Aligned_cols=208 Identities=13% Similarity=0.054 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GC 302 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 302 (475)
..++..+...|...|++++|...++++.+.. ...+....++..+...|...|++++|.+.+++..+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555566666555555554320 001123345555555666666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011919 303 -APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---- 370 (475)
Q Consensus 303 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 370 (475)
+.....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|.+.+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 112445556666666667777776666666543 1111 2455667777777777777777777776642
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 371 ---GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ---~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+.. ..+..+.......+....+.. +..+.. .+..++....++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112222 222222222222222222221 111111 11111224567888889999999999999999888753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-10 Score=95.17 Aligned_cols=208 Identities=9% Similarity=-0.106 Sum_probs=157.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011919 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.|+..+......+.+.|++++|.+.|++..+.. .+++...+..+..++...|++++|+..+++..+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 467888889999999999999999999998853 12677777778999999999999999999998764 225677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSV 381 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 381 (475)
+..++...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999886543 33 45788888899999999999999999865 565 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+...+... +..+++++...+. .+...|.... ....+.+++|+..+++.++.. |.+......+..
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLAS---SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTT---TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccc---CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 66666544 3445566655542 2344444443 334677899999999999887 555555554433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-10 Score=112.73 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++.++.+.. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455555555555555555555555555432 113445555555555566666666666555554322 3455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|...|++++|++.|++.++.. .-+...+..+..+|...|++++|++.|++..+.. +.+...|..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 6666666666666666665532 1234556666666666666666666666666643 22455666666666666666
Q ss_pred HHHHHHHHHHH
Q 011919 430 VEAAKLARFML 440 (475)
Q Consensus 430 ~~A~~~~~~m~ 440 (475)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=114.66 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=125.8
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677777888888888888888888877653 2356778888888888888888888888877654 445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877764 2357778888888888888888888888887753 34567777888888888888
Q ss_pred HHHHHHHHHHHH
Q 011919 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.5e-11 Score=104.73 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=77.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI------D-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 229 (475)
...++..+...+...|++++|.+.+++.... + .+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445566666666666666666666655432 1 1122345566666666666666666666665543 1
Q ss_pred -CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 230 -CAANLVAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 230 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.+....++..+...|...|++++|.+.++++.+. +...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223455666666777777777777777666552 000112344566666666677777777776666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=92.74 Aligned_cols=198 Identities=12% Similarity=0.042 Sum_probs=133.2
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666777777888888888888877765533566666667778888888888888888877654 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+... .+. ..|..+...+.+.|++++|.+.|+++.+.. +. +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 888888888888888888777532 234 456777777888888888888888887742 22 35566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 337 (475)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 66665443 33444444432 22334443333 2344567888888888877553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-09 Score=91.14 Aligned_cols=91 Identities=10% Similarity=-0.137 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--
Q 011919 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQ-- 447 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 447 (475)
..+...|...|++++|...|+++.+.....+.....+..+..+|... |++++|.+.++++++.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 34445566666666666666666665322111334555666666544 67777777777777664 222
Q ss_pred -hhhHHHHHHHHHhcCCHhHHhhcc
Q 011919 448 -GPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
......+...+.+.|+.+.+..+.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 123445555555666655554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-08 Score=88.43 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=151.3
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011919 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
..=.|++..++.-...+... ........+.++++..|+++.. + .-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc----H
Confidence 33468888888755544331 2223334456778878877642 1 1134333433333333 222 6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
+..|++..+.+ .++..++..+..++...|++++|++++.+....+. ..-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777776654 45566666778888888888888888888766431 01356677778888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 299 ALGCAP-----NRVTISTLIKGFC--VEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 299 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+. .| +..+...++.++. ..| +..+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 3455566665532 233 7888888888876654 3322233444477788888888888876654
Q ss_pred C-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 370 S-----GV----KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 370 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
. +. .-+..++..+|......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 10 2245566455555555565 7778888888764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-08 Score=85.58 Aligned_cols=183 Identities=7% Similarity=0.009 Sum_probs=114.8
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
|+..|+++...+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567777666554 45555556677777777888888888877765543 1255666777777888888888888888776
Q ss_pred hcCCCCCC-----cHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 262 KEGGDCSP-----NVVTYTSVIQIF--CG--KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 262 ~~~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
+. .| +..+...+..++ .. .+++.+|+.+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 35 234444444442 22 33778888888887654 344333344445777788888888888765
Q ss_pred HhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011919 333 VAGG---------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 333 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
.+.. -.-+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 5431 02245555455555555666 777888887765 4543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-09 Score=79.87 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444443322 2233334444444444444444444444444332 12333444444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444321 1233344444444444444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=91.76 Aligned_cols=140 Identities=11% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLYPD-IITYVSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 219 (475)
+++|...|++. ...|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 33455667777776666655331 11111 345556666666666666666
Q ss_pred HHHHHHHHCCC---Cc--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCC-C--cHHHHHHHHHHHHhcCCHHHH
Q 011919 220 GLFKVMKRHGC---AA--NLVAYSALLDGICRL-GSMERALELLGEMEKEGGDCS-P--NVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 220 ~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a 290 (475)
..+++..+... .+ -..+++.+...|... |++++|+..|++..+...+.. + ...++..+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66655543210 00 023444555555553 555555555555443110000 0 022344444445555555555
Q ss_pred HHHHHHHHH
Q 011919 291 LGILDRMEA 299 (475)
Q Consensus 291 ~~~~~~m~~ 299 (475)
+..|++..+
T Consensus 178 ~~~~~~al~ 186 (292)
T 1qqe_A 178 SDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-08 Score=89.07 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=56.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C-cCHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-A-ANLVAY 237 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~~~ 237 (475)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+..++.+.|++++|...|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34445555556666666666666666665532 112 34555566666666666666666666665421 1 113445
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhc
Q 011919 238 SALLDGICR--------LGSMERALELLGEMEKE 263 (475)
Q Consensus 238 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 263 (475)
..+..++.+ .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 555556666 66677777777666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=91.11 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChHHH
Q 011919 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAAN-LVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a 253 (475)
++++|.+.|++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777766665 33566677777777777766542 21111 45677777777777777777
Q ss_pred HHHHHHHHhcCCCC-CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 011919 254 LELLGEMEKEGGDC-SP--NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAP-N----RVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 254 ~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~ 324 (475)
+..+++..+..... .+ ...+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777665421000 00 123555566666664 66666666666554321000 0 2345555555666666666
Q ss_pred HHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 325 AYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
|...|++..+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666554322211 134445555555666666666665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-08 Score=77.70 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4455555666666666666666665543 2245555556666666666666666666665532 23444555555556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665555432 22344444555555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-07 Score=86.81 Aligned_cols=354 Identities=10% Similarity=-0.021 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC-HHHHHHHHHhcccC-CC-CCCHhhHHHH
Q 011919 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEF-DL-RPDTIIYNNV 170 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 170 (475)
...|..++..+-. ++.+.+..+|+..... .|++..|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3344444444433 5566666666666553 3566666666665555442 23344555554432 32 2244555555
Q ss_pred HHHHH----hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCcC
Q 011919 171 IRLFC----EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-------------NAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 l~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+..+. ..++.+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 54432 23455666666666654211101112221111100 01122333444443332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011919 234 LVAYSALLDGICRLG--S-----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
...|...+..-...+ - .+.+..+|+++... ++.+...|-..+..+.+.|+.++|..++++.... |..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 345555444322221 1 34566788887764 2455677777777788888888898888888876 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
..+.. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..
T Consensus 246 ~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 246 MFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp SHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 22211 22222111221 22222110 001 1244666666666777888999999888 321 22
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 375 DGLACSVMIRE-LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+...|...... +...++.+.|+.+|+...+.. | .+...+...++...+.|+.+.|..+|+.+ ......|..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~-~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~ 389 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P-DSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDS 389 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 33444322211 122346888999999888763 2 23455666777777888888888888886 235677788
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011919 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.-...|+.+.+..+++
T Consensus 390 ~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 8877778888888877553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-08 Score=82.10 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=75.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011919 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
+..+|.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 6666777777777777777776643 3456667777777777777777777777776653 22455566665555444
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011919 320 GN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 320 g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
|. .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33 2334444444332 1222222333444555667777777777777644 566443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-07 Score=79.69 Aligned_cols=209 Identities=8% Similarity=-0.092 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|...|+++.+...+.+.-..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666777777777777777664221 1 13456666677777777777777777776642110000113333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
+..++...+.. .+ ..|..+...+...|+.++|...|+++++..+.. ...+...... +
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~l----~- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKRL----V- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHHH----H-
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHHH----H-
Confidence 33333332210 00 011122233344567777777777777654321 2222111100 0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
.+...+. .....+...+.+.|++++|...|+++.+.....+.....+..+..++.+.|++++|.+.+
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 011234456777888888888888888764221112356777888888888888888888
Q ss_pred HHHHHcC
Q 011919 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 8877765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-09 Score=83.08 Aligned_cols=144 Identities=10% Similarity=-0.026 Sum_probs=105.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++.. +-+...|..+...+...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3445567788888888777654321 33456677888888888888888888888653 235677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+|...|++..+.. +.+..+|..+...|.+.|++++|.+. +++.++.. |-++.++......+...|+
T Consensus 83 ~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888865 23677888888888888888776654 57788776 6677777777777777764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=79.84 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG----NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
.+..+...|...+++++|+..|++..+.| +...+..|-..|.. + ++++|.+.|++..+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444443332 22333333333333 3 4444444444444433 223344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 349 VELVR----TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 349 ~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+- +...+..|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 44443 44555555555555543211 013444444444444 4455666666665555411 22344455
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRK-N-----HSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 443 (475)
...|... | ++++|.++|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555432 2 5666666666666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.5e-08 Score=82.33 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+..++.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|+++.+.. |.+..+|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6677777778888887777777764 2366777777777777888888888887777743 34566677776666554
Q ss_pred CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 285 GM--MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 285 g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
|+ .+.+...++.... ..|....+...-.++...|++++|...|++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 43 3334444444321 12222223333445556677888888888777644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-07 Score=79.05 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011919 207 KGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~ 226 (475)
..|...+++++|...|++..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~ 45 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAA 45 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHH
Confidence 33333333333333333333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-07 Score=79.62 Aligned_cols=203 Identities=12% Similarity=-0.013 Sum_probs=114.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANL-VAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~ 238 (475)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667788899999999999999999875311 1 1356788889999999999999999999986422 111 2444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFC 317 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 317 (475)
.+..++.+.|.. .+. .|..+...+...|++++|...|+++.+.. |+. .........
T Consensus 83 ~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH--
Confidence 555555543210 000 11122233344566666666666666542 222 111111000
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVL 393 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 393 (475)
..+...+. .....+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+.+
T Consensus 140 --------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 140 --------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp --------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcH
Confidence 00000000 01123455666777777777777777654 2331 34556666777777777
Q ss_pred HHHHHHHHHHHcC
Q 011919 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 7777777766654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-08 Score=98.71 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=122.0
Q ss_pred HhcCChhHHHHHHHHhc--------cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 175 CEKGDMIAADELMKGMG--------LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...|++..+.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888776 322 4456677777778888888888888888877754 2366777778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877753 3456677777778888888888 88888777653 235567777777888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
..|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888877665432 24556666666655444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-08 Score=81.64 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HH
Q 011919 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FC 210 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 210 (475)
+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344455666666666666666665532 2345556666666666666666666666655432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..++..+|...+++..+.. +-+...+..+...+...|++++|...|+++.+... -..+...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122223455555555432 12355555555555555556665555555554310 001133455555555555555555
Q ss_pred HHHHHHH
Q 011919 291 LGILDRM 297 (475)
Q Consensus 291 ~~~~~~m 297 (475)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-06 Score=77.11 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hhc---CC
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGK---GM 286 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 286 (475)
++|+.+++.++..... +..+|+.--..+...| ++++++++++.+.... |.+..+|+.--..+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3455555555544211 3334444444444444 5555555555555432 23333443332222 223 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HH
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------LK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 358 (475)
+++++++++.+.+.. +-+...|+.-.-.+.+.|.++ ++++.++.+++.++. |...|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 555555555555542 224444444444444555555 666666666655443 44445444444444444 66
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011919 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE-GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
++++.+++++... .-|...|+.+-..+.+.|+... +..+..++.+.+-..+.+...+..+.+.|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777776653 2355666666666666665333 4445555444320011256677777777777888888888888
Q ss_pred HHHHcCCCCChhhHHH
Q 011919 438 FMLKKRIWLQGPYVDK 453 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~ 453 (475)
.+.++--|.....|+.
T Consensus 283 ~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHTTCGGGHHHHHH
T ss_pred HHHhccChHHHHHHHH
Confidence 8776321455555553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-06 Score=78.15 Aligned_cols=221 Identities=10% Similarity=-0.005 Sum_probs=128.4
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC--CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH----Hhc---
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF----CEK--- 177 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 177 (475)
.+..+.|+++.+.+...+ +-+...|+.--..+...+ ++++++..++.+...+ +-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344456777777766654 445556666556666666 7777777777776644 23455555544444 344
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC------
Q 011919 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGS------ 249 (475)
Q Consensus 178 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------ 249 (475)
+++++++++++++.+.. +.+-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 56677777777776654 456666666666666666666 677777777665433 56666655555555554
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
++++++.++.+.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 666666666666543 4556666666666666555333 333444333221 1224455555555565666666666
Q ss_pred HHHHHHHh
Q 011919 327 QLIDKVVA 334 (475)
Q Consensus 327 ~~~~~~~~ 334 (475)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-08 Score=87.08 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=104.0
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH-H
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS-M 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l 205 (475)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344555556666777777777777777776543 2355667777777777777777777777766542 44332222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+...+ ..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcC
Confidence 223455566666777777666653 335667777777777777777777777777664210 012456666777777777
Q ss_pred CHHHHHHHHHHHH
Q 011919 286 MMKEALGILDRME 298 (475)
Q Consensus 286 ~~~~a~~~~~~m~ 298 (475)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777766665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-07 Score=94.65 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=143.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 210 CNAGRLEDACGLFKVMK--------RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 78899999999999998 432 3467788899999999999999999999998853 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011919 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++.++.+.. +...|..+..++.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998864 2356778889999999999999 9999999887644 5678999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 011919 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ 391 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 391 (475)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999998855 565 4566667777766555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-08 Score=80.11 Aligned_cols=162 Identities=10% Similarity=0.008 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-H
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-I 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~ 244 (475)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34455566667777777777777666543 3455666667777777777777777777665542 233333222211 1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 011919 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~ 323 (475)
...+...+|...+++..+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22223334566666666542 3346666667777777777777777777766653322 2445666667777777777
Q ss_pred HHHHHHHHHH
Q 011919 324 EAYQLIDKVV 333 (475)
Q Consensus 324 ~a~~~~~~~~ 333 (475)
+|...|++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777766654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-08 Score=87.31 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI-RE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~ 385 (475)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+........ ..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33444444455555555555555555544322 3344555555555555555555555554433 23332221111 12
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~ 464 (475)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|++.++++++.... .+...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 334444555555555555443 224455555555555555555555555555554411 1134455555555555555
Q ss_pred hHHh
Q 011919 465 ELIT 468 (475)
Q Consensus 465 ~~a~ 468 (475)
+.|.
T Consensus 272 ~~a~ 275 (287)
T 3qou_A 272 DALA 275 (287)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 4443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=81.40 Aligned_cols=139 Identities=9% Similarity=-0.014 Sum_probs=68.3
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..|++++|+..++...... +-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555544321 1123334445555555566666665555555433 3345555555555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-LGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
.|++..+.. +-+..++..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence 555555543 12445555555555555555544433 34444421 233444444444444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-08 Score=94.99 Aligned_cols=152 Identities=8% Similarity=-0.055 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011919 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
+++++|.+.++...+.. +-+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666777776665543 3356666666677777777777777777766643 235666777777777777777777777
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 011919 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKE 263 (475)
Q Consensus 188 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 263 (475)
++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7766543 3445666777777777777777777777766653 22556666677777777 7777777777777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-08 Score=87.50 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=115.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN-AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.|++++|.+++++..+.. +. .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777665421 11 0222 46677776666654 456777888888888
Q ss_pred HHHHHHhcCC--CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 011919 256 LLGEMEKEGG--DCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---CAPN--RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 256 ~~~~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.|.+..+... +-+ .-..+|+.+...|...|++++|+..+++..+.- -.+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887665210 000 113466777777778888888888887765321 0111 2455566666666 77777777
Q ss_pred HHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 011919 328 LIDKVVAGGSVS-----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 328 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++.++..... ...++..+...|...|++++|++.|++..+... .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777665421110 134566666677777777777777776664311 111 1233444445555677777777
Q ss_pred HHHHHH
Q 011919 398 LYEDIE 403 (475)
Q Consensus 398 ~~~~~~ 403 (475)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777666
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=93.91 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=103.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887643 3457778888888888888888888888887753 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIE 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 403 (475)
+.+++..+.... +...+..+..+|...|++++|.+.+++..+.. ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 46677788888888888888888888887653 23456777777777777 88888888888888
Q ss_pred HcC
Q 011919 404 KIG 406 (475)
Q Consensus 404 ~~~ 406 (475)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.2e-08 Score=86.74 Aligned_cols=185 Identities=12% Similarity=0.028 Sum_probs=104.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC-CcHHHHHHHHH
Q 011919 208 GFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCS-PNVVTYTSVIQ 279 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~li~ 279 (475)
.|...|++++|...|.+..+. |-. .-..+|+.+...|.+.|++++|...|++..+.. .+-+ ....++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666554432 100 013356666667777777777777776654420 0000 11345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS-GGCYSSLVV 349 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~ 349 (475)
.|.. |++++|+..|++..+. |... ...++..+...|.+.|++++|...|++.... +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6766 7777777777766532 1000 1345667777778888888888888777653 11111 224556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDG------LACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~ 397 (475)
++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 3321 2233444444 4566555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-06 Score=75.87 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCch
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLA----S-GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDS 413 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~ 413 (475)
++.+...|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|...+++..+. +..+ .-.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~-~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA-LIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT-THH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH-HHH
Confidence 44444445555555555555444442 1 11111 124444455555555555555555544432 1100 113
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNH-SVEAAKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 441 (475)
.+|..+..++.+.|+ +++|.+.+++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455556666666663 4666666555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-06 Score=74.54 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=90.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PN----RVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 311 (475)
+..+...|++++|.+++++..+.. ...|+.. .+..+...+...|++++|+..+++..+.... ++ ...++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 555666777777777777666532 1122211 2223444555566777777777666653211 12 224666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVA----G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPD-GLACS 380 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 380 (475)
+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66667777777777777766653 1 1111 1235666666677777777777776665532 22222 44566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 011919 381 VMIRELCLGGQ-VLEGFCLYEDIEK 404 (475)
Q Consensus 381 ~li~~~~~~g~-~~~a~~~~~~~~~ 404 (475)
.+..++.+.|+ .++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666663 4666666655543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.9e-07 Score=74.93 Aligned_cols=129 Identities=10% Similarity=-0.038 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011919 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+.... +...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 344555666667777777777776552 446666777777777777777777777776665422 455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 352 VRTKRLKEAEKLFSKMLASGVKPD---------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|.+.|++..+...... ...+..+..++...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777665421110 144555555666666666666666666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-06 Score=74.23 Aligned_cols=129 Identities=14% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666666553 3455666666666666666666666666666543 2355666666666666
Q ss_pred cCChHHHHHHHHHHHhcCCC------------CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 247 LGSMERALELLGEMEKEGGD------------CS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|++++|.+.|++..+...+ .. .....+..+..++...|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777776666653210 00 12255666666777777777777777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-06 Score=73.88 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--hh
Q 011919 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV---SS--GG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 342 (475)
.+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444456666777777777777776665422111 112334555667778888998888888753221 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCch
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 413 (475)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+... .+..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999888731 00122 25778888889999999999999998775421 111125
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011919 414 DIHSVLLLGLCRKNHSVEA-AKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 441 (475)
.+|..+..+|.+.|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-05 Score=71.66 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=129.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc-C-C
Q 011919 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-G-D 179 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~ 179 (475)
.+...+..+.|+++.+.+...+ +-+..+|+.--..+...+ .+++++.+++.+.... +-+..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 4444556677888888888776 556677777666777777 5999999999998765 34777888877777776 6 8
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--------DACGLFKVMKRHGCAANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-- 249 (475)
+++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 899999999998765 567777776555555555555 888888888887543 77788877777777775
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 250 -----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCC
Confidence 678888888877753 4667777776666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-07 Score=68.39 Aligned_cols=110 Identities=7% Similarity=-0.120 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Confidence 456667778888888888888888887653 3356777788888888888888888888888865 236778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|++.|++.++.. |-+......+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888876 555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-06 Score=66.82 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 3456666677777777777777777776542 2345666677777777777777777777777654 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
..+...|++++|.+.++++.... +.+...+..+...+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 77778888888888888777765 45555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=67.61 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHHHHHH
Confidence 3456667777777888888888888777642 2356667777777788888888888888877754 23567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
..+...|++++|.+.+++.++.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888776 55667777777777777764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-05 Score=73.70 Aligned_cols=344 Identities=8% Similarity=-0.083 Sum_probs=209.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-ccCHHhHHHHHHHHH----HcCC
Q 011919 72 SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN-PSIIIDVVEAYKEE-GC-VVSVKMMKVIFNLCE----KARL 144 (475)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~ 144 (475)
++.+.+..+|...... .|+..+|...+....+.++ .+.+..+++..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6677788888877653 2588888888877666553 45566777776653 42 446777877777654 3467
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHH-------------hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+..+|++........-...|......-. ..+.+..|..+++++...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999887321111112222211100 011233344444443321001133456555544322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011919 212 AG--R-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 212 ~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.+++++.... |.+...|.. |...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHhh
Confidence 21 1 345678999988753 456888988899999999999999999999984 334333332 2222
Q ss_pred CCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH--HHHH
Q 011919 285 GMMKEALGILDRMEALG---------CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS--LVVE 350 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~ 350 (475)
...++. ++.+.+.- ..+ ....|...+....+.++++.|..+|+.. ... ..+...|.. .+..
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111222 22222110 001 1245666667777788899999999999 321 223344432 2322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011919 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.. .++.+.|..+|+...+.- .-+...+...++-....|+.+.|+.+|+.+.+ ....|...+..-...|+.+
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHH
Confidence 22 336999999999998752 12344455667767788999999999999721 5678888888878889999
Q ss_pred HHHHHHHHHHH
Q 011919 431 EAAKLARFMLK 441 (475)
Q Consensus 431 ~A~~~~~~m~~ 441 (475)
.+.++++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-06 Score=76.00 Aligned_cols=169 Identities=9% Similarity=-0.066 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CCC--h
Q 011919 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL---YPD--I 199 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 199 (475)
..+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|.+.+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677778888888888876655321111 11233455566677788888888777654221 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC-CCc
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---H-GCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC-SPN 270 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~ 270 (475)
.+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|.+.+++..+.. .+. ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777777778888888887777662 1 1111 12466777777777888888887777765421 000 011
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011919 271 VVTYTSVIQIFCGKGMMKEA-LGILDRME 298 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 298 (475)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45666677777777777777 55555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-06 Score=67.95 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHHH
Confidence 34566777777777788888888887777542 2256667777777777888888888888777754 2356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..++.+.|++++|.+.+++.++.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 788888888888888888877765 444556666666666555
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-06 Score=70.17 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444445555555555555444332 2234444444445555555555555555544432 2234444455555555
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.++++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-05 Score=69.83 Aligned_cols=245 Identities=10% Similarity=-0.052 Sum_probs=115.7
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-ChHHH
Q 011919 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-G-SMERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~a 253 (475)
.+..++|+++++++...+ +-+..+|+.--..+...| ++++++.+++.+.....+ +..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 334455666666665543 334444555555555555 366666666666655422 455555544444444 4 55666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
+++++.+.+.. +.+..+|+.-.-.+.+.|.++. .+ ...+.++++.+++++
T Consensus 145 L~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 145 IEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHH
Confidence 66666665532 3445555443333333333330 00 000124444444444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------
Q 011919 334 AGGSVSSGGCYSSLVVELVRTKR-------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-------------- 392 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-------------- 392 (475)
+.++. |..+|+.....+.+.++ ++++++.+++++... .-|...|+-+-..+.+.|+.
T Consensus 195 ~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~ 272 (349)
T 3q7a_A 195 RVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272 (349)
T ss_dssp HHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-
T ss_pred HhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 44332 33344444444444433 455555555555432 12344444433333333332
Q ss_pred ------HHHHHHHHHHHHcC---CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 393 ------LEGFCLYEDIEKIG---FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 393 ------~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
........++.... ............+++.|...|+.++|.++++.+.++--+.....|+-..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 273 KLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp -------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11122222222111 0001356677888888888888888888888876554345555554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-06 Score=65.83 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233344444444444444444444444444432 123344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 011919 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-06 Score=66.44 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444444444455555555444444332 2334444444444444444444444444444432 1234444444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555554444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=66.47 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=56.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455555566666666666666666655433 2345555555566666666666666666655543 224555555666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 011919 243 GICRLGSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~ 262 (475)
+|.+.|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666555
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-06 Score=68.07 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+...+...|++++|...|+...+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444455555666666666666666554322 34556666666667777777777776666542 2245566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 011919 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL--LLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 440 (475)
.|++++|...+++..+... .+...+..+ +..+...|++++|++.+.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766532 233444333 333556677777777766554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.6e-06 Score=65.59 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|...|++++|...|++..+.. |.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 4567778888999999999999999998763 3357788888889999999999999999999875 34678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.+|.+.|++++|.+.|++.++.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999876 4443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=73.05 Aligned_cols=100 Identities=9% Similarity=-0.152 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCch
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---FLSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 413 (475)
++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. ..+....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4455555555666666666655554431 1011 12334455555666666666666666655321 0010112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++..+...+...|++++|.+.+++.++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33566666677777777777777666643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=73.31 Aligned_cols=135 Identities=13% Similarity=0.001 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-- 304 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-- 304 (475)
..++..+...|...|++++|...+++..... .+ .+....++..+...+...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3444445555555555555555555443310 00 0112233444444555555555555555443321 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
....+..+...+...|++++|...+++.... +... ...++..+...+...|++++|.+.+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223344444444555555555555444321 1000 01223444455555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-07 Score=80.98 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=52.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011919 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...+..+...+.+.|++++|.+.|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2344555555555555566666665555555543 2244555555556
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011919 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-06 Score=73.50 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=118.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------
Q 011919 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSV-------IQIFCGKGMMKEALGILDRMEALGCAPN------------- 305 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~------------- 305 (475)
..++...|.+.|.++.+.. |-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 4677777777777777643 3345566655 3444444444444444433322 1121
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 011919 306 ---------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD- 375 (475)
Q Consensus 306 ---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~- 375 (475)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1122345566777888888888888776654 322245555567778888888888887554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 376 -GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+..+-.++...|++++|+..|++.......|............++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667778888888888888888875332132234456667777888888888888888888876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=65.65 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 2233334444444444444444444444444332 1123344444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=69.60 Aligned_cols=100 Identities=11% Similarity=-0.079 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHH
Confidence 34456667777788888888888888877653 2356677777777888888888888888888764 2356777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+|...|++++|.+.|++.++..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888888887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=71.45 Aligned_cols=121 Identities=7% Similarity=0.033 Sum_probs=76.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011919 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE-LCLGGQV--LE 394 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 394 (475)
..|++++|...++...+.... +...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666676677666654432 45566667777777777777777777766542 2245555556666 5567776 77
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|...++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777654 2355667777777777777777777777777665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=75.06 Aligned_cols=128 Identities=8% Similarity=-0.044 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 011919 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--RVTISTLIKG 315 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~ 315 (475)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 344555666666666666666665432 332244444456666666666666665433321 110 2245555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6667777777777776654332132 234445555666777777777777777654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9.1e-07 Score=70.17 Aligned_cols=98 Identities=15% Similarity=0.014 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. |.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 3345555555566666666666666665543 2245556666666666666666666666665532 23445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011919 279 QIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+|...|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.7e-07 Score=72.31 Aligned_cols=120 Identities=7% Similarity=0.009 Sum_probs=68.3
Q ss_pred hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--HH
Q 011919 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSM--ER 252 (475)
Q Consensus 176 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 252 (475)
..|++++|.+.+++..... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666655433 3445566666666666666666666666665543 2245555555555 5566666 66
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666542 234555566666666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=79.21 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3444455555555555555555555555542 1244555555555555555555555555555432 23344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011919 279 QIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.++...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-06 Score=76.50 Aligned_cols=146 Identities=11% Similarity=0.014 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+-.. ...+|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~~--------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQAL--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHHH--------HHHHHHHHHH
Confidence 45566666677777777777777777666542 211000 00011000000 1345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777653 2356667777777777788888888887777754 23566777777777777777
Q ss_pred HHH-HHHHHHHH
Q 011919 430 VEA-AKLARFML 440 (475)
Q Consensus 430 ~~A-~~~~~~m~ 440 (475)
++| .++++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 34555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=9.2e-06 Score=60.81 Aligned_cols=110 Identities=10% Similarity=-0.078 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 446666777777778888888777776642 2355666777777777788888888888777764 235667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 8888888888888888877665 444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=68.62 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 3334444444444444444444444332 1234444444444444444444444444444421 22333444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=76.44 Aligned_cols=124 Identities=6% Similarity=-0.188 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..+...|.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566666666666666666666665421111 4678888999999999999999999999975
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011919 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++.+.|+.+++.+
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999987 6778889999999999999988843
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00033 Score=62.82 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC-HHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEALG 292 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~ 292 (475)
++++.+++.+.....+ +..+|+.-...+.+.| ++++++.+++.+.+.. +.|..+|+.-.-.+...|. ++++++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4444455444443221 4444444444444444 2455555555555432 3444445444444444444 355555
Q ss_pred HHHHHHHc
Q 011919 293 ILDRMEAL 300 (475)
Q Consensus 293 ~~~~m~~~ 300 (475)
.++.+.+.
T Consensus 167 ~~~~~I~~ 174 (331)
T 3dss_A 167 FTDSLITR 174 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-06 Score=64.85 Aligned_cols=98 Identities=8% Similarity=-0.142 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|...|++..+.+ +.+...|..+..++...|++++|...|++..+.. +.+...|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHH
Confidence 345556666777777777777777777643 2345666667777777777777777777777764 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011919 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...|++++|.+.|++.++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777788888887777777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-05 Score=62.79 Aligned_cols=112 Identities=7% Similarity=-0.160 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccCHHH
Confidence 3456667777777888888888888887754 455 4666677777788888888888888877754 235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..++...|++++|.+.+++.++.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7788888888888888888888888765 4455555444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00038 Score=62.39 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~ 326 (475)
+++++.+++.+.... |.+..+|+.-.-.+...+ .+++++.+++.+.+.. +-|...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998854 567888888777777777 4899999999999875 3477777777677777888 68999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 011919 327 QLIDKVVAGGSVSSGGCYSSLVVELVRT--------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--- 389 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 389 (475)
+.++.+++.++. |...|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999987755 666777666666554 45788999999988763 33566666444444443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 390 --------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL---GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 390 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+.++++++.++++.+.. | .+...+-.++. .....|..+++...+.++++.. |.....|..+...+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--P-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--c-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 45788999999999875 2 23333322222 1224678889999999999887 66666666655544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.5e-06 Score=63.52 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011919 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHH
Confidence 44556666777777777777777777766543 2245666667777777777777777777777754 2356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..++...|++++|.+.+++.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-05 Score=59.44 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2244444555555555555555555555554432 123445555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011919 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.9e-06 Score=61.90 Aligned_cols=98 Identities=10% Similarity=-0.109 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777888888888888777653 2356677777777788888888888888877764 235677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011919 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++...|++++|.+.+++.++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-06 Score=66.27 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011919 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
..+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..|++.++.. .-+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555555544322 34445555555555555555555555555432 11244444555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011919 387 CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-05 Score=61.03 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 418 (475)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+.......+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46667778888888888888888887653 2346677778888888888888888888877643111011 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011919 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..++...|++++|++.|++.+... |++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHHH
Confidence 8888888999999999999888753 666655544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.3e-06 Score=64.27 Aligned_cols=88 Identities=15% Similarity=-0.011 Sum_probs=35.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++...|
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHcC
Confidence 333344444444444444443332 1133334444444444444444444444444321 222333333444444444
Q ss_pred CHHHHHHHHHHH
Q 011919 286 MMKEALGILDRM 297 (475)
Q Consensus 286 ~~~~a~~~~~~m 297 (475)
++++|...|+..
T Consensus 101 ~~~~A~~~~~~a 112 (142)
T 2xcb_A 101 DLDGAESGFYSA 112 (142)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-05 Score=65.82 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+..+...+...|++++|...|++..+...... ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555666667777777777777665432211 144555555555555666665555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
. ..+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455555555555555555555555555542 123444555555554444444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=59.84 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~ 279 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHHH
Confidence 3334444444444444444444444332 1133344444444444444444444444444421 12 3344444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 011919 280 IFCGK-GMMKEALGILDRMEA 299 (475)
Q Consensus 280 ~~~~~-g~~~~a~~~~~~m~~ 299 (475)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=61.66 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHH
Q 011919 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHS 417 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 417 (475)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.......+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666677777777777777777776643 2355666677777777788888888877777653110011 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+...+...|++++|.+.++++++.. |+......+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 78888888888888888888888765 45665555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=59.39 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSAL 240 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 240 (475)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666667777777777777777666543 3455666666777777777777777777766653 22 46666677
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhc
Q 011919 241 LDGICRL-GSMERALELLGEMEKE 263 (475)
Q Consensus 241 l~~~~~~-g~~~~a~~~~~~~~~~ 263 (475)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-05 Score=73.20 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=101.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANL----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
+.+.+.|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+..+......+ ++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc
Confidence 4456677777777777777665322111 134556666777777777777666655421111 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 011919 271 V----VTYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GS-- 337 (475)
Q Consensus 271 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-- 337 (475)
. .+.+.+-..+...|+.++|..+++.... .+..+. ..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233345666666666655432 122222 234555666666666666666666655432 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 338 VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVK-P-D--GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1235556666666666666666666655431 111 1 1 123344444455556666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-05 Score=59.21 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 3334444444445555554444444432 1234444444555555555555555555444432 22344444444445
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011919 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 55555555555554444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=59.25 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSV 277 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l 277 (475)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++..+......++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555554432 2234455555555555555555555555544321000010 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-05 Score=64.95 Aligned_cols=148 Identities=11% Similarity=-0.088 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HHH
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---------------RVT 308 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~ 308 (475)
....|+++++.+.++.-.... ......+..+...+...|++++|+..|++..+...... ...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 334455555555554222210 12344555566666677777777777776665321111 145
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+..+|...|++++|...++..++.... +...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 666666666777777777777776665322 45566666667777777777777777666542 1234445555555555
Q ss_pred cCCHHHHH
Q 011919 389 GGQVLEGF 396 (475)
Q Consensus 389 ~g~~~~a~ 396 (475)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.9e-05 Score=63.56 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666666666666666666665543 3355566666666666666777766666666653 224666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 011919 243 GICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 677777777777777666653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-05 Score=60.37 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011919 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 85 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHHHH
Confidence 334444444444444444444444444332 1133444444444444444444444444444421 223344444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011919 280 IFCGKGMMKEALGILDRME 298 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~ 298 (475)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=61.28 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AAN----LVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 240 (475)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444455555555554444332 22334444444444445555555554444443211 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011919 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-05 Score=69.86 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=143.7
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPDI----------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAAN 233 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~ 233 (475)
...+.+.|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999998775422111 236788999999999999999999876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 011919 234 LV----AYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GC-- 302 (475)
Q Consensus 234 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 302 (475)
.. +.+.+-..+...|+++.|.+++....... .....-..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 23334444556789999999999886521 111223567788999999999999999999987643 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 303 AP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 303 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
.+ ....+..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888889999999999999999987643 11111 24566677778888999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.2e-05 Score=59.42 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=53.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44455555555666666666666666555432 33 3445555555555666666666665555542 22445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 011919 239 ALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+|...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666666666665555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-05 Score=57.71 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..+...+...|++++|.+.|++..+.. |+. ..+..+..++...|++++|...++.+.+.....+.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556667777777777777776542 222 35556666777777888888777777775421100145667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++.+.|++++|.+.|+++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778888888888888777765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=62.86 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchh
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSD 414 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~ 414 (475)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++..+... .+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555666666667777776666665532 1001 133455566667777788877777777664310 1111245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777778888888888888888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-05 Score=59.01 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5556677778888888888888887653 2256777777778888888888888888888865 23667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011919 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.|++++|++.+++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.3e-06 Score=62.58 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHH
Q 011919 354 TKRLKEAEKLFSKMLASGV--KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 431 (475)
.|++++|+..|++.++.+. +-+...+..+...|...|++++|...+++..+.. +.+..++..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 4566667777776665421 1123455566666677777777777777777654 2355667777777777777777
Q ss_pred HHHHHHHHHHcC
Q 011919 432 AAKLARFMLKKR 443 (475)
Q Consensus 432 A~~~~~~m~~~~ 443 (475)
|++.+++.+...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-05 Score=73.91 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
....+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888889999999999999999987543322 467888889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 011919 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~ 442 (475)
. ..+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.++++++.+ .++.|..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 3357788888889999999999999999998864 2366788888888888888887764 45666544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=62.66 Aligned_cols=97 Identities=14% Similarity=-0.001 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLAS--------G---------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|+..++...+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455555566666666655555432 0 01123456667777788888888888888888764
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.+...|..+..+|...|++++|.+.|++.+...
T Consensus 94 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 2367778888888888888888888888888776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-05 Score=71.15 Aligned_cols=91 Identities=4% Similarity=-0.217 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3566667777777888888888888877754 2366777778888888888888888888887776 55666777777
Q ss_pred HHHHhcCCHhHHhhc
Q 011919 456 EHLKKSGDEELITNL 470 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l 470 (475)
.++.+.++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3e-05 Score=58.77 Aligned_cols=91 Identities=9% Similarity=-0.111 Sum_probs=42.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+... -+...+..+..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444332 22344444444444455555555555554444321 134444444444555555
Q ss_pred hHHHHHHHHHHHh
Q 011919 250 MERALELLGEMEK 262 (475)
Q Consensus 250 ~~~a~~~~~~~~~ 262 (475)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=75.92 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445555555555555443221 23444445555555555555555555544432 11234444444444455555555
Q ss_pred HHHHHHHHHc
Q 011919 396 FCLYEDIEKI 405 (475)
Q Consensus 396 ~~~~~~~~~~ 405 (475)
.+.+++..+.
T Consensus 94 ~~~~~~al~~ 103 (477)
T 1wao_1 94 LRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00017 Score=54.88 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDG 243 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~ 243 (475)
+...+...|++++|.+.|++..+.. +.+. ..+..+..++...|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455555555555555554432 1112 24444555555555555555555555543211 1 3444555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011919 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.7e-05 Score=61.18 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-cCHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLY-PD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----CA-ANLVA 236 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-~~~~~ 236 (475)
+..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...+++..+.. -. .....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444444555555555555444321100 00 1234444444555555555555554443310 00 01233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011919 237 YSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.9e-05 Score=71.08 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 011919 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------RVTISTLI 313 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li 313 (475)
+++++|.+.|+...... +.....|..+...+.+.|++++|+..|++..+...... ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555554433321 13456788889999999999999999999887532211 57888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (475)
.+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..+. .|+ ...+..+..++.+.++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 6788999999999999999999999999975 443 45677777777788887
Q ss_pred HHHH-HHHHHHHH
Q 011919 393 LEGF-CLYEDIEK 404 (475)
Q Consensus 393 ~~a~-~~~~~~~~ 404 (475)
+++. ..+..|..
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 7665 34444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=59.34 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=42.5
Q ss_pred cCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011919 177 KGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... -+...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555432 122334455555555555555555555555555432 24455555555555556666665
Q ss_pred HHHHHHHh
Q 011919 255 ELLGEMEK 262 (475)
Q Consensus 255 ~~~~~~~~ 262 (475)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-05 Score=73.93 Aligned_cols=125 Identities=7% Similarity=-0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011919 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+..+...+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...|..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3334556778999999999999998863 335788999999999999999999999999987643 57788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 011919 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRE--LCLGGQVLEGFCLYED 401 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~ 401 (475)
.|++++|.+.|++..+... -+...+..+..+ +.+.|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999987531 123344444444 7778888888888765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=67.89 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+|..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455555555555555666655555555532 2344555555555555566666665555555432 11344444444
Q ss_pred HHHHhcCCHHHHH
Q 011919 314 KGFCVEGNLDEAY 326 (475)
Q Consensus 314 ~~~~~~g~~~~a~ 326 (475)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444445444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00073 Score=66.03 Aligned_cols=173 Identities=8% Similarity=-0.061 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-
Q 011919 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN----------LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK- 355 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 355 (475)
.++|++.++++...+. -+...|+.--.++...|+ ++++.+.++.+.+.+.+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 3455555555555421 122333333333333334 67777777777765544 4556666666666667
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-------
Q 011919 356 -RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG-QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK------- 426 (475)
Q Consensus 356 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 426 (475)
+++++++.++++.+... -+...|+.-...+.+.| ..+++.+.++++.+... .+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhccccccc
Confidence 56777777777776542 35566665555556666 67777777777776542 3667777766665552
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011919 427 -------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 427 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
+.++++++.+++++... |-+...|......+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788999999999887 7788888888888888777555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=55.86 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI----- 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 405 (475)
+......+.+.|++++|++.|++.++. .|+ ...|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455566667777777777766653 222 226777777888888888888888888875
Q ss_pred CCCCCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 406 GFLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 406 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+. +.+...| .....++...|++++|++.|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 112 3467788 88999999999999999999998864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=70.23 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011919 315 GFCVEGNLDEAYQLIDKVVAG---GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----GV-KPD-GLACS 380 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~ 380 (475)
.+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.++- |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776542 1111 2457888888888888888888888876641 21 222 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|...|...|++++|+.++++..+ .|...+....+.+.+..++...+++++|..+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887764 24333233455666777777888889998888888763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.4e-05 Score=54.64 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hh
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ------GP 449 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~ 449 (475)
...+..+...+...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|++.+++.++.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 4455666667777777777777777777754 2356677777777778888888888888777665 333 45
Q ss_pred hHHHHHHHHHhcCCHhHHhhcc
Q 011919 450 YVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+..+..++...|+.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5666666777777666655433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=56.49 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 166 IYNNVIRLFCEKGDMIAADELMKGMGLI--------D---------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
.+......+.+.|++++|+..|.+.... . -+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554332 0 0112344555555666666666666666665554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
. +.+...|..+..+|...|++++|...|++...
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455566666666666666666666666655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00016 Score=69.07 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 011919 244 ICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTIST 311 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ 311 (475)
+...|++++|+.++++..+. |...+....+++.+..+|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655442 1111112344555666666666666666655554321 1 011 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~ 332 (475)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555555554444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0008 Score=52.12 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHHHHh
Q 011919 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.+++++|.++|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHc
Confidence 3344444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0015 Score=63.93 Aligned_cols=174 Identities=6% Similarity=-0.042 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCC----------HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 176 (475)
....++|++.++.+...+ +-+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344566777777777765 4455666665555555555 788888888887755 3467778777777777
Q ss_pred cC--ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc------
Q 011919 177 KG--DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------ 247 (475)
Q Consensus 177 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------ 247 (475)
.| +++++++.++++.+.+ +-+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 78 6688888888887765 557777777777777777 788888888888776533 667776666555542
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 248 --------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
+.++++++.++++.... |-+..+|.-.-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCc
Confidence 45677888887777643 45666777666666666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0006 Score=52.85 Aligned_cols=111 Identities=11% Similarity=-0.036 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMK 288 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 288 (475)
++.++|.+.|++..+.| .++.. +...|...+.+++|.+.|++..+.+ +...+..+...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 34556666666666555 22222 4455555555666666666665532 44455555555555 55666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 336 (475)
+|+..|++..+.| +...+..|-..|.. .++.++|...|+...+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666555543 33444445455544 455555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.6e-05 Score=67.72 Aligned_cols=131 Identities=17% Similarity=0.044 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
...+..+...+.+.|++++|...|++.+... |+.. +|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677778888899999999999987754 3222 4555556666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-LCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.. ..+...+..+..+|...|++++|...|++..+.. | .+...+..+... ....+..+++.++|++|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5542 2244555556666666666666666666655432 1 133444444333 22334555555566555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0008 Score=52.84 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKE-------GGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|..+..++.+.|++++|+..+++..+. . +.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666777777777666666653 2 2334455 6666666666666666666666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00019 Score=65.36 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRE- 385 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~- 385 (475)
.|..+..+|.+.|++++|...++..++.+.. +...|..+..+|...|++++|.+.|++..+. .|+. ..+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 3444555555555555555555555544321 3445555555555556666666555555432 2322 222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011919 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
....+..+.+...|..+...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 12234445555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00054 Score=48.22 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++.+... +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445555556666677777777777666653 1245666667777777777777777777777665 445555555555
Q ss_pred HHHhc
Q 011919 457 HLKKS 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0011 Score=49.22 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|.+.|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 2234555556666666666666666666666543 124556666666666666666666666666
Q ss_pred HHcCC-CCChhhHHHHHHHHHhcC
Q 011919 440 LKKRI-WLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 440 ~~~~~-~~~~~~~~~l~~~~~~~g 462 (475)
+.... ..+......+...+.+.|
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhc
Confidence 55431 123334444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=49.24 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444443322 2234444444444444555555555554444432 12344444444445555555555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00053 Score=53.74 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+.+++++|.+.+++..+.. +-+...|..+-.++...++ +++|+..|++..+.. +.+..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHH
Confidence 4455666666666666542 2245555555555555544 457777777777764 2356777777777
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011919 423 LCRKN-----------HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 423 ~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|...| ++++|++.|+++++.. |+...|...+....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 77653 7888888888888775 555566555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00047 Score=50.71 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 22333344444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0015 Score=45.88 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444444432 12344444444455555555555555554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.021 Score=58.64 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=97.5
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 209 FCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 209 ~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.... -.......|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCCH
Confidence 344566666655 33111 1122225566666666777766654421111 12223455667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7666664332 2455666666666677777666666665532 444444455555555444333333
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011919 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
. ..|+++.|...+... | -+...++.|.+.+++++|..+-+. . .|.
T Consensus 734 ~-------------------~~~~~~~A~~~~~~~---g--------~~~~a~~~~~~~~~~~~A~~lA~~---~--~~~ 778 (814)
T 3mkq_A 734 E-------------------TTGKFNLAFNAYWIA---G--------DIQGAKDLLIKSQRFSEAAFLGST---Y--GLG 778 (814)
T ss_dssp H-------------------HTTCHHHHHHHHHHH---T--------CHHHHHHHHHHTTCHHHHHHHHHH---T--TCC
T ss_pred H-------------------HcCchHHHHHHHHHc---C--------CHHHHHHHHHHcCChHHHHHHHHH---h--CCC
Confidence 2 233333333332211 1 023334445556666666665443 2 344
Q ss_pred h----hhHHHHHHHHHhcCCHhHHhhcc
Q 011919 448 G----PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 ~----~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
. .........+...|+.+.|..+.
T Consensus 779 ~~~i~~~~~~~~~~L~~~~~~~~a~~l~ 806 (814)
T 3mkq_A 779 DNEVNDIVTKWKENLILNGKNTVSERVC 806 (814)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHTTBC
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHhhC
Confidence 4 55566666777777766666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0013 Score=47.55 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHH
Q 011919 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|++.+++.++... .++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 34556666666677777777777777776654 22455677777777777777777777777665421 244445555
Q ss_pred HHHHHHhcC
Q 011919 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+...+.+.+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00068 Score=53.12 Aligned_cols=85 Identities=11% Similarity=-0.044 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM----------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666555543 23555555555555555543 35555555555433 2334455555555554
Q ss_pred cC-----------CHHHHHHHHHHHHHC
Q 011919 212 AG-----------RLEDACGLFKVMKRH 228 (475)
Q Consensus 212 ~~-----------~~~~a~~~~~~m~~~ 228 (475)
.| ++++|++.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 42 455555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=46.75 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=32.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+...+..+..++.+.|++++|++.|++..+.+ +.+...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555554433 2234445555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.012 Score=60.44 Aligned_cols=128 Identities=14% Similarity=0.072 Sum_probs=74.6
Q ss_pred HHHHHcCCHHHHHH-HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 137 NLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 137 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
......+++++|.+ ++..+. +......++..+.+.|..+.|+++.++- . .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 33445677777766 543322 1222366667777777777777655211 1 112334567777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 7777775432 2567777888888888888888887776643 3344444555666555444444
Q ss_pred HHHH
Q 011919 296 RMEA 299 (475)
Q Consensus 296 ~m~~ 299 (475)
....
T Consensus 732 ~a~~ 735 (814)
T 3mkq_A 732 DAET 735 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.005 Score=57.69 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhhHHHHHH
Q 011919 354 TKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDIHSVLLL 421 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~ 421 (475)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+. |...+.-..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776541 12222 356777788888888888888888876642 4333334567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011919 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999988888775
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.004 Score=58.39 Aligned_cols=94 Identities=10% Similarity=-0.083 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011919 348 VVELVRTKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455678888888888887753 12222 356778888888888888888888877642 3332234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999888774
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.017 Score=41.08 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+...|++++|.+.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555432 11233 4444444555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0067 Score=56.82 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
.+++.|..+|...|++++|+.++++..+- |...+....+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445555555555555555555444321 1111112233444444555555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.039 Score=49.74 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555531 4444444444455555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.14 Score=38.18 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.....+..+...|+-|+-.+++..+.. +.+|++...-.+..||.+.|+..+|.+++.+.-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344555556666666666666666433 2255556666666666666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.037 Score=39.05 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 374 PDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654443 688888888888865 3467778888888888888888888888888776
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=55.05 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+++.+...|...|++++|+.++++...- |...+....+++.+...|...|++++|+.++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4444455555555555555555444321 111111223344444444444444444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.23 Score=39.47 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011919 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445566666666665544 2455666666666666666666666665542 33344444455565
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444444333 122333334445666666666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.39 Score=43.29 Aligned_cols=67 Identities=15% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011919 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3455555555555555566666666666666553 555555555555666666666666666665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=41.10 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 209 FCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444432 11233 444444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.048 Score=42.17 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
...+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+++++.+.. .|..+...+-.+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666666553 67777777777777777 5668888888887764 12124566667777788888888888
Q ss_pred HHHHHHHHcC
Q 011919 434 KLARFMLKKR 443 (475)
Q Consensus 434 ~~~~~m~~~~ 443 (475)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.33 Score=38.53 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
...|..|.....+.|+++-|.+.|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44444444444444444444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.29 Score=36.61 Aligned_cols=139 Identities=9% Similarity=0.111 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
-.|..++..++..+..+. .+..-||.++.-....-+-+...++++.+-+- -|.. ..|+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDis----------~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDLD----------KCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCGG----------GCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCcH----------hhhcHHHH
Confidence 456777777777776664 25666666666666666666666766666542 1211 12223322
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+-.+- .+...+...+..+...|+-|+-.+++.++.. +..|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22222211 1334455566667777777777777777544 33455666677777777777777777777777777
Q ss_pred CCC
Q 011919 371 GVK 373 (475)
Q Consensus 371 ~~~ 373 (475)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.14 Score=36.07 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.++|..++++..+.. +-+......+...+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444432 11334444444444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.19 Score=36.18 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++..+..++.+.|++++|..+++++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.49 E-value=3.7e-05 Score=70.64 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=108.0
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011919 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 207 (475)
.+..|..|..+..+.+++.+|++-| ++. -|+..|..++.+..+.|.+++-.+++...++.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456666677766666666665443 221 355667777777777777777777776555442 23333346777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------------------CCCCC
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------GDCSP 269 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------------~~~~~ 269 (475)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+..-. ..-..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777655433331 2455555566677777777777777665554311 00012
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011919 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
++.||..+-.+|...+.+.-|.-.--.+.- .|+ -...++..|...|.+++.+.+++.-.... ......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 344555555555555544433322222211 111 12234444555555655555555544221 123445555555
Q ss_pred HHHhc
Q 011919 350 ELVRT 354 (475)
Q Consensus 350 ~~~~~ 354 (475)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 55554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.13 Score=39.81 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
.+.+-|.+..+.|. ++..+...+.-++++.+ +++++..++++..+.+ .| +...+..|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45555555556666665 4556777777666654 12 234444555666777777777777
Q ss_pred HHHHHHCCCCCC
Q 011919 364 FSKMLASGVKPD 375 (475)
Q Consensus 364 ~~~m~~~~~~p~ 375 (475)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 7777654 453
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.25 Score=35.49 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..++..+..+|.+.|+++.|...++++.+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444555555555555555554444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=1.6 Score=37.83 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 011919 287 MKEALGILDRMEALGCAPN---RVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRL 357 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 357 (475)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666654 344 44667777777773 78888888888877755432355566666767664 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHH
Q 011919 358 KEAEKLFSKMLASGVK--PDGL 377 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~--p~~~ 377 (475)
+++.+.+++.+..... |+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHcCCCCCCCChh
Confidence 8888888887776555 5533
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.5 Score=36.13 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 011919 340 SGGCYSSLVVELVRTKRL------KEAEKLFSKMLASGVKPDG----LACSVMIR---ELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~----~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|-.|.- .+...+++++|+++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344555555555555666 6666677666543 33332 11111111 1123478999999999988763
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
+. =...|-.....-.+.|+.+.|.+++...+..+ +.+...+...++-+.
T Consensus 91 -Kk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 -KK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLN 139 (161)
T ss_dssp -TT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhh
Confidence 21 25667777777778999999999999999887 555566666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.39 Score=35.63 Aligned_cols=89 Identities=21% Similarity=0.131 Sum_probs=59.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE---GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+.+. |.......-.|..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhH
Confidence 33445556666665555443 666666666777777776555 7777777777541 112445556677788888888
Q ss_pred HHHHHHHHHHHHcC
Q 011919 430 VEAAKLARFMLKKR 443 (475)
Q Consensus 430 ~~A~~~~~~m~~~~ 443 (475)
++|.+.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.59 Score=40.44 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-CC
Q 011919 358 KEAEKLFSKMLASGVKPD---GLACSVMIRELCL-----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-NH 428 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 428 (475)
..|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++..+.+. .-+..++..+.+.+++. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCC
Confidence 4455555555543 344 3445555555555 3666666666666666532 11245555566666653 66
Q ss_pred HHHHHHHHHHHHHcCCC
Q 011919 429 SVEAAKLARFMLKKRIW 445 (475)
Q Consensus 429 ~~~A~~~~~~m~~~~~~ 445 (475)
.+++.+.+++.+.....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 66666666666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.97 Score=34.57 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=47.9
Q ss_pred CHhhHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 011919 163 DTIIYNNVIRLFCEKGDM------IAADELMKGMGLIDLYPDII-TYVSMIKGF------CNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g 229 (475)
|..+|-..+...-+.|++ ++..++|++... .++|+.. .|...|..+ ...+|.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 555555555544 2234321 111111111 12355666666666665432
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 230 CAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-.- ...|......=.+.|++..|.+++.....
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 222 45555555555566666666666666655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=3.8 Score=38.36 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHhcc-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH----HhcC
Q 011919 178 GDMIAADELMKGMGL-----IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI----CRLG 248 (475)
Q Consensus 178 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~g 248 (475)
|+++.|++.+-.+.+ .+..........++..|...|+++...+.+..+.+..-.. ......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 677777777655533 2233445567778888888888888777776655432221 22223333322 2222
Q ss_pred ChHHHH--HHHHHHHhc-CCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHH
Q 011919 249 SMERAL--ELLGEMEKE-GGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPN---RVTISTLIKGFC 317 (475)
Q Consensus 249 ~~~~a~--~~~~~~~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~ 317 (475)
..+... .+.+..... ...+-. .......|...+...|++.+|.+++..+... |.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 111111110 000001 1122345666677777777777777776532 21111 234555566677
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 318 VEGNLDEAYQLIDKVVA----GGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
..+++.+|..++..+.. ....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777766532 122221 23455566666667777777766666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=4 Score=38.23 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----H
Q 011919 212 AGRLEDACGLFKVMKRH-----GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----C 282 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~ 282 (475)
.|++++|++.+..+.+. ....+......++..|...|+++...+.+..+... .+..+... ..+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai--~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSI--QYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHH--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHH--HHHHHHHHHHHh
Confidence 36788888877666542 23446777888999999999999988888777654 23333322 2333322 2
Q ss_pred hcCCHHHHH--HHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHH
Q 011919 283 GKGMMKEAL--GILDRMEA--LG-CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GSVSS---GGCYSSLVV 349 (475)
Q Consensus 283 ~~g~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 349 (475)
.....+... .+.+.... .| +-. .......|...+...|++.+|.+++..+... +.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 11111110 01 111 1112345677778888888888888887542 22111 245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH----HH
Q 011919 350 ELVRTKRLKEAEKLFSKMLA----SGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS----VL 419 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l 419 (475)
.|...+++..|..++.+... ....|+ ...+...+..+...+++.+|.+.|.++.+..... .+...+. .+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHH
Confidence 78888888888888777642 222222 1334555566667778887777777776532110 1222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
+.+..-.+....-..++........-++...+..++.+|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 222223333333334444444443334455666666666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=2.2 Score=39.17 Aligned_cols=68 Identities=9% Similarity=-0.065 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
++.++...|+.+++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|++.+-.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3444445555555555555554433 22444555555555555555555555544432 25555554433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.00038 Score=64.14 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
++..|..++....+.+.++..+..+...++..-.|.+. +.|+-+|++.++..+-.++ .. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHH
Confidence 45567888999999999999999988877764444444 4688899999886553222 22 367767778888
Q ss_pred HHHhcCChhHHHHHHHHhccCC--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011919 173 LFCEKGDMIAADELMKGMGLID--------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
-|...|.++.|.-+|..+.... -..+..||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 8888888888877776654321 0235667777777777777776654433333321
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011919 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
......++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++.
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE---rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1122345666777788888887777765421 35666777777666664 44544444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.54 Score=46.96 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=77.2
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCC-HHHHHHHHHHHHHC------CCC-cCH----
Q 011919 170 VIRLFCEKGD-MIAADELMKGMGLIDLYPDIITY--VSMIKGFCNAGR-LEDACGLFKVMKRH------GCA-ANL---- 234 (475)
Q Consensus 170 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~-~~~---- 234 (475)
++..+...++ .+.|..+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ..+ .+.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3333444555 577999999987754 333332 233333333332 22455555444321 111 111
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 235 ------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.....-.+.+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222455677899999999999998852 4568899999999999999999999988873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.72 Score=34.23 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE---AYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
.+.+-+......|. ++..+-..+.-++.+...... ++.+++++.+.+.+ -.......|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444443333332 455554455555555554443 66666666554311 12233334455566666666666666
Q ss_pred HHHHHC
Q 011919 365 SKMLAS 370 (475)
Q Consensus 365 ~~m~~~ 370 (475)
+.+++.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.53 E-value=4 Score=43.55 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------
Q 011919 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------- 230 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------------- 230 (475)
..++..+.+.+..+.+.++..-.. .+...--.+..++...|++++|...|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 345556666677766666554332 2333334455666777777777777765321 11
Q ss_pred ------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 231 ------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN--VVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302 (475)
Q Consensus 231 ------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 302 (475)
..-..-|..++..+.+.|.++.+.++-....+....-.++ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1112346778888899999999998887776542211222 22578888999999999999999988876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 011919 303 APNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~~~~ 324 (475)
+ ...+..|+...|..|..+.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHhCCChhh
Confidence 3 3456667776776665443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.05 E-value=12 Score=38.37 Aligned_cols=154 Identities=11% Similarity=0.104 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcC
Q 011919 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS---TLIKGFCVEG 320 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g 320 (475)
+.-.|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|. .-|. .+.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCC
Confidence 334455555555555544421 1111112222223335566666666666555431 111 1121 2223455556
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-LEGFCLY 399 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 399 (475)
+.....+++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|..+.-..+.-+....|.. .++...+
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6655555666655432 1122222233333334455444555555444432 33333333333333334332 4455555
Q ss_pred HHHHH
Q 011919 400 EDIEK 404 (475)
Q Consensus 400 ~~~~~ 404 (475)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 55543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.87 E-value=13 Score=38.22 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=141.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGC-------AANLVAYSALLDG 243 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~ 243 (475)
+.+..|+.++++.+++.....+-..+..+ =..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888888888877664210122222 22333445566666678887776665321 0112222333333
Q ss_pred HHhcCC-hHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 011919 244 ICRLGS-MERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCV 318 (475)
Q Consensus 244 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 318 (475)
++-.|. -+++.+.+..+.... .+...... .+...++-.|+.+....++..+.+.. +......+.- ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 346666666666532 11111122 23334556678787788887776542 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011919 319 EGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.|+.+.+..+.+.+.... .|.... -.++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789898988888887642 232221 1234456778889887777998887652 223333333333555677777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011919 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS-VEAAKLARFMLK 441 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 441 (475)
++++.+.+.+ ++.+..-..+..+....|+. .+|+.++..+..
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666654 22444444444455555544 567777777753
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.53 E-value=3.4 Score=44.08 Aligned_cols=192 Identities=10% Similarity=0.017 Sum_probs=115.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------
Q 011919 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC---------------- 302 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------- 302 (475)
.++..+.+.+..+.+.++..-. +.+....-.+..++...|++++|.+.|++... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 3445566666666666544332 23444445566788889999999999976421 11
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011919 303 -------APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS----GGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 303 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 371 (475)
..-..-|..++..+.+.+.++.+.++-...++....-+ ...|..+..++...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 01123467788888888999988888777665322212 2368888999999999999999888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHH
Q 011919 372 VKPDGLACSVMIRELCLGGQVLE------------GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARF 438 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~ 438 (475)
.+ ...+..|+..+|..|..+. ..+++..-.+....+......|..|=.-+...|++..|-.+ |+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 33 4566677777776655443 33343322221100111123344444445567777776655 444
Q ss_pred HH
Q 011919 439 ML 440 (475)
Q Consensus 439 m~ 440 (475)
+.
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=11 Score=36.86 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.-+..+.+.+++...+..+.. . +.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4455667777887777765543 1 3455555556777778888777777777665555 45566677777777766
Q ss_pred CCHHH--HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH--------------
Q 011919 213 GRLED--ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS-------------- 276 (475)
Q Consensus 213 ~~~~~--a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------- 276 (475)
|.+.. ...=++.+...| +...-..++..+ . .+.....+.+..+... +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN----PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC----GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC----hHhHHHHHhccCCChhhHHHHHH
Confidence 65432 333333344433 222222222221 1 1111111222233331 122221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011919 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK----GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.-+.+ .+.+.|...+....... ..+......+-. .....+...++...+........ +.....-.+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHH
Confidence 1111222 35667777776665432 122222222222 22223324455555555443322 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.|+++.|.+.|..|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56777777777776654211 1223233344556667777777777777764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.46 E-value=1.5 Score=30.74 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011919 103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 173 (475)
.+.+.. +.-.+.+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++..- .....+|..+++-
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 344444 555677778888888889999999999999999999999999999887532 2334567777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=1.3 Score=40.63 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-----LGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 308 (475)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456677778888888888887777643 55777888888888888888888888877643 477777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.40 E-value=3.7 Score=41.03 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=29.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011919 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|...|+++.|+++-++....- |.+..+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566666666666665542 235566666666666666666666555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.35 E-value=3.2 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 180 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
.-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-.+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335555666666666667777777777777777777777777766554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.11 E-value=5.6 Score=29.66 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 371 GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+ |......+-.|..++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345676666666666666654 456888888888765 22245667777888889999999999999888776
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.36 E-value=11 Score=34.33 Aligned_cols=168 Identities=8% Similarity=-0.059 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH
Q 011919 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
......|...|.+.|+.++..+++.....- .+..+ .......+++.+... +..+.-.++..+..+..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677889999999999999988877542 11112 223355677777664 344445555555443211 112233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 011919 310 ------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-----GGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDG 376 (475)
Q Consensus 310 ------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 376 (475)
..++..|...|++.+|.+++..+.+.=-..| ...|..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2577888888999999888888765311111 245666677788888888888888877542 233444
Q ss_pred HHHHHH--HH--HHH-hcCCHHHHHHHHHHHH
Q 011919 377 LACSVM--IR--ELC-LGGQVLEGFCLYEDIE 403 (475)
Q Consensus 377 ~~~~~l--i~--~~~-~~g~~~~a~~~~~~~~ 403 (475)
..-..+ .. .+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 332221 11 234 6788888888776653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.05 E-value=3.4 Score=30.80 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
.+.+.. +.-+..+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++..- .+....|..+++
T Consensus 61 ~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 61 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344434 455667778888888889999999999999999999999999999887542 244556777765
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.23 E-value=5.8 Score=29.58 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011919 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 182 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+..+-++.+...++.|+..+....+++|-+.+|+..|.++|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455555666666667777777777777777777777777776665431 22333454444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.40 E-value=9.6 Score=28.41 Aligned_cols=72 Identities=6% Similarity=0.084 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011919 302 CAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
-.|+..+-..+.-++.+..+ ..+++.+++++.+.+..-....+--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 34555555555555555544 3456777777766553223445555666777778888887777777754 554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.99 E-value=20 Score=31.73 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF----SKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~li~ 384 (475)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++. +-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444556666666666654321 11233444444433333 33334455566655555555
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 385 ELCLGGQVL-EGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 385 ~~~~~g~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
.+.....-+ .-..+.+++.+ .|..+.-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 544433211 11222222222 22222235566666667777777777666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.85 E-value=20 Score=31.49 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL----FSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~li 383 (475)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+-+.+.++.++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455566677778888887776432 2234455665555443 44444567777777777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 384 RELCLGGQVL-EGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 384 ~~~~~~g~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
..+.....-+ .-.++.+++. +.|..+.-+...+..+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655432111 1233344443 233223336778888888888888888887755
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.71 E-value=9.1 Score=35.57 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 011919 428 HSVEAAKLARFMLKKR 443 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~ 443 (475)
..+++.+.+-+|+..|
T Consensus 360 s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 360 SVAFLDNDLGKFIPNK 375 (429)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4566677777777554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.27 E-value=9.6 Score=35.41 Aligned_cols=98 Identities=9% Similarity=-0.108 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 011919 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLACS-- 380 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-- 380 (475)
+...+...|.+.|+++.|.+.+.++...-. ..-...+-.+++.+...+++..+...+.+... .+-.|+...--
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566777888888888888888888876422 22345677777888888888888888877653 22223222110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234567787777777776654
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.09 E-value=28 Score=31.20 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHhc
Q 011919 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMG 191 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~ 191 (475)
..+|.-|...++.++|...++++..... .......++......++ -+.+-.++..+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 3456666677778888887777653221 22233334443333332 234455555555
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=81.31 E-value=7.6 Score=33.15 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 011919 169 NVIRLFCEKGDMIAADELMKG 189 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~ 189 (475)
..+...++.|+.+.+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 345556677777666555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.79 E-value=12 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 334444554444444333 344444433322 2344444444444444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.70 E-value=7.1 Score=30.43 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=30.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCcC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAAN-------LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555566666655555433211 1122 12444555666666777777766666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.64 E-value=16 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 373 KPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+..+--.+..++.+..+ ..+++.+++++.+.+. .......-.|..++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5666666666666666654 4567788888877542 2245556667778888888888888888888876
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.43 E-value=14 Score=31.43 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 188 (475)
..+...++.|+.+....+++.-.......+..-+ +.+...+..|+.+-+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHH
Confidence 4566677788887777776654332222222222 34455566777655544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.17 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.57 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.89 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.28 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.93 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 84.0 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.6e-20 Score=169.25 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=288.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHH
Q 011919 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...|+++.|.+.++...+.. +-+..++..+..++.+.|++++|+.
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 456667777666654432 2345666666677777777777777777776654 4456677777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011919 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.+....+.. +.+...+..........+....+........... .................+....+...+.......
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 777776543 2344444444444555555555555554443332 3344445555666667778888888887777654
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011919 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+-+...+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...++.....+ ..+...+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 3367788888999999999999999999988753 4567788999999999999999999999988764 34667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011919 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence 8889999999999999999999887543 56788899999999999999999999988753 456788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011919 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|.+.+++..+.. | .+..+|..+..+|.+.|++++|.+.|+++++.. |-++..+..+..++.+.||
T Consensus 320 ~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC--T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999998754 3 467889999999999999999999999999876 5678889999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-19 Score=167.56 Aligned_cols=358 Identities=13% Similarity=0.021 Sum_probs=295.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011919 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
....-..|+++.|.+.++.+.+.. |-+...+..+..++.+.|++++|...|++..+.. +-+..+|..+..++.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 345566799999999999998764 4567888888899999999999999999988764 34678899999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011919 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.+....... +.+...+..........+....+............ ................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999999988755 44555555666666666666666666666555443 34555666677778888999999988888
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011919 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
.... +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.. +
T Consensus 162 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred hccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 7753 4567788888899999999999999999988763 335678888999999999999999999999886544 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|.+.|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+.
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~ 312 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC---CccchhhhHHH
Confidence 6678888999999999999999999998763 2356788889999999999999999999998865 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|++.+++.++.. |.++..+..+..++.+.|++++|.+..+
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999998876 6677889999999999999999987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.8e-13 Score=123.09 Aligned_cols=270 Identities=13% Similarity=-0.004 Sum_probs=176.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011919 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|++..+.. +-+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555667777777777777776654 3456667777777777777777777777766653 225666666777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTY-TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
++++|.+.++.+.... |+.... ........ ..+.......+..+...+...+|..
T Consensus 102 ~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT----PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp CHHHHHHHHHHHHHTS----TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc----cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHH
Confidence 7777777777766632 221110 00000000 0000011111223344456777888
Q ss_pred HHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 328 LIDKVVAGGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 328 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.+....+... ..+..++..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|.+.+++..+..
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 8877765443 2345677788888889999999999999888653 2346778888888999999999999999988864
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCChhhHHHHHHHHHhcCCHhHHh
Q 011919 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR----------IWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
+.+..+|..+..+|.+.|++++|++.|++.++.. .......+..+..++...|+.+.+.
T Consensus 237 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred ---hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2367788899999999999999999999888631 1223345666777777777776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.2e-13 Score=119.02 Aligned_cols=228 Identities=12% Similarity=0.031 Sum_probs=124.2
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+.+.|++++|+..|+++.+.. +-+...|..+..++...|++++|...|++..+.. +-+...|..+...+...|+++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 34555666666666666665543 2245556666666666666666666666655433 234455555666666666666
Q ss_pred HHHHHHHHHHHCCCC--------------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011919 217 DACGLFKVMKRHGCA--------------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~--------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
+|.+.++........ .+.......+..+...+.+.+|.+.+.+..+... -..+...+..+...+.
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-cccccccchhhHHHHH
Confidence 666666665543210 0000111112223334455666666666554321 1234455556666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011919 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 362 (475)
..|++++|+..+++..... +-+...|..+..++...|++++|.+.|++.++.... +..+|..+..+|.+.|++++|++
T Consensus 184 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666665542 223455566666666666666666666666554322 34456666666666666666666
Q ss_pred HHHHHHH
Q 011919 363 LFSKMLA 369 (475)
Q Consensus 363 ~~~~m~~ 369 (475)
.|++.++
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.9e-09 Score=95.04 Aligned_cols=296 Identities=13% Similarity=0.023 Sum_probs=156.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-cCHHHHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLIDLYPD-----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----CA-ANLVAYSAL 240 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-~~~~~~~~l 240 (475)
...+...|++++|++++++..... +.+ ...+..+...+...|++++|...|++..+.. .. .....+..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 344455555666655555554322 111 1234445555556666666666665544321 00 012234445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc----CCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKE----GGDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEALG----CAPNRVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ 311 (475)
...+...|++..+...+...... .....+ ....+..+...+...|+++.+...+....... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55566666666666666554331 010111 12234445556666677777777666655431 1122334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 011919 312 LIKGFCVEGNLDEAYQLIDKVVAG----GSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP---DGLACSVM 382 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l 382 (475)
....+...++...+...+...... +..+ ....+..+...+...|++++|...+.+..+..... ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 555566667777666666554431 1111 12234555566677777777777777665432221 12344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CChhh
Q 011919 383 IRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQGPY 450 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~ 450 (475)
..++...|++++|...++..... +..| ....++..+...|.+.|++++|.+.+++.++. |.. .....
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMS-DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 66777778888887777766532 2222 23456677777777888888888887776543 211 11223
Q ss_pred HHHHHHHHHhcCCHhHHh
Q 011919 451 VDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~ 468 (475)
+..++..+.+.++.++++
T Consensus 337 ~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhcCCChHHH
Confidence 445555666666655543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-09 Score=95.91 Aligned_cols=214 Identities=11% Similarity=-0.006 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011919 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
|+.+...+.+.+..++|+++++++++.. +-+...|+....++...| ++++|+..++...+.. +-+..+|..+...
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---HhhhhHHHHHhHH
Confidence 3334344444455555555555555442 113444444444444443 2455555555554432 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 011919 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR---- 356 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 356 (475)
+.+.|++++|++.++.+.+.. +-+...|..+...+.+.|++++|.+.++.+++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 555555555555555555432 223445555555555555555555555555554332 33344444444433332
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 357 --LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 357 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+++|++.+.+.++.. +-+...|..+...+ .....+++.+.++...+....+ .+...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTC-CCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHH
Confidence 455666666665542 12344444443333 3333455666666665543222 13344445555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=6.9e-09 Score=91.69 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011919 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 328 (475)
..++|..+|++..+. ..+.+...|...+..+...|++++|..+|+.+.+.........|...+..+.+.|+++.|.++
T Consensus 79 ~~~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 457788888887763 234556677777888888888888888888887654333345677888888888888889999
Q ss_pred HHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 329 IDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
|+.+++.+... ...|...... +...|+.+.|..+|+.+.+.. +.+...+...+..+...|+++.|+.+|++..+...
T Consensus 157 ~~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 98888765432 3333333322 334578888999998888752 33567788888888888999999999998887643
Q ss_pred -CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 408 -LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 408 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|......|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22223457888887777889999999988888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=3.6e-09 Score=93.60 Aligned_cols=184 Identities=13% Similarity=0.031 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011919 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
+..++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+.+++.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578889999988765555667788888889999999999999999998665544567899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 365 SKMLASGVKPDGLACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.+.|..+|++.++..
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~---p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 999876432 3333333332 2345689999999999999874 2367899999999999999999999999999875
Q ss_pred -CCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011919 444 -IWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 444 -~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|. ...|...+......|+.+.+.++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2332 3478888888889999999988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3e-08 Score=89.03 Aligned_cols=300 Identities=12% Similarity=0.058 Sum_probs=195.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CC----ChhhHHHH
Q 011919 135 IFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YP----DIITYVSM 205 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l 205 (475)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|.+.+++...... .+ ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34466778888888888888766431111 23566777788888899888888887654210 11 12345566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcHHHHHH
Q 011919 206 IKGFCNAGRLEDACGLFKVMKRH----GCAA---NLVAYSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTS 276 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~----g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~ 276 (475)
...+...|++..+...+...... +... ....+..+...+...|+++.+...+........ +.......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 67778889988888888766532 1111 123555677788889999999999888776421 11223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 011919 277 VIQIFCGKGMMKEALGILDRMEAL----GCAPN--RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSL 347 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 347 (475)
....+...++..++...+.+.... +..+. ...+..+...+...|++++|...++.........+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 667778888888888888765432 11111 22345566677888999999999988765443222 3445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--CchhhH
Q 011919 348 VVELVRTKRLKEAEKLFSKMLA----SGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSS--VDSDIH 416 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~ 416 (475)
..++...|++++|.+.+++... .+..|+ ...+..+...|...|++++|.+.+++..+. |.... ......
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 8889999999999999988763 344443 346677778889999999999999987653 21100 011233
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 011919 417 SVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~ 434 (475)
..++..+.+.++.+++.+
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 445555556666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.3e-08 Score=90.01 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011919 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 174 (475)
.|+.+..++...+..++|+++++.+.+.+ |-+...|+....++...| ++++|+..++...+.. +-+..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44455556677788899999999988875 557778888887777765 5899999999887754 34778888888889
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----
Q 011919 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS----- 249 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~----- 249 (475)
.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++.+++.... +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 99999999999999888765 567888888888999999999999999998887533 67777777766666554
Q ss_pred -hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 011919 250 -MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFC 317 (475)
Q Consensus 250 -~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 317 (475)
+++|++.+..+.+.. |.+...|+.+...+.. ...+++.+.++...+....+ +...+..+...|.
T Consensus 201 ~~~~ai~~~~~al~~~---P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV---PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC---CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888877753 4566777766555443 44567777777665543222 3444555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.2e-09 Score=90.48 Aligned_cols=197 Identities=9% Similarity=-0.114 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
+|..+..+|.+.|++++|.+.|++..+.. |.+..+|+.+..++.+.|++++|+..|++..+.. +-+..++..+..+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 45555666667777777777777666642 3455666666777777777777777777666643 1234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C
Q 011919 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG----Q 391 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~ 391 (475)
+...|++++|...|+..++.... +......+..++.+.+..+.+..+........ ++...+. ++..+.... .
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHH
Confidence 66777777777777776665432 23333333334444455444444444444332 1111121 111111111 1
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.+...+....... +....+|..+...|...|++++|.+.|++.+...
T Consensus 191 ~~~~~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 122222111111110 1133567778888888899999999998888765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=6.2e-10 Score=99.95 Aligned_cols=232 Identities=11% Similarity=-0.008 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHH-HHHHHHhcCCHHH
Q 011919 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTS-VIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~ 289 (475)
|++++|+..++...+.. +-+...|..+..++...+ ++++|...+.++.+.. +++...+.. ....+...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhccccHH
Confidence 33555666666655543 224445555544444443 3566666666665532 233444432 2344455566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
|+..++...+... -+...|..+...+.+.|++++|...+....+.. | ....+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6666666555432 245555555566666666555443332222210 0 011122233444555556666665554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011919 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.. .++...+..+...+...|+.++|...+.+..+.. +.+..+|..+...+.+.|++++|++.++++++.. |.+..
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~ 311 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAA 311 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHH
Confidence 42 2233344444555555666666666666665543 2245666666777777777777777777776665 33445
Q ss_pred hHHHHHHHHH
Q 011919 450 YVDKIVEHLK 459 (475)
Q Consensus 450 ~~~~l~~~~~ 459 (475)
.|..+...+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.3e-09 Score=97.89 Aligned_cols=265 Identities=9% Similarity=-0.039 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHhcccCCCCCC-HhhHHHHHHH----------HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011919 143 RLANEAMWVLRKMPEFDLRPD-TIIYNNVIRL----------FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~----------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 211 (475)
+..++|++++++..+.. |+ ...|+..-.. +...|++++|+.+++...+.. +.+...|..+..++..
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 33467777777766543 33 3334332222 223345778888888877654 4566667777666666
Q ss_pred cC--CHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011919 212 AG--RLEDACGLFKVMKRHGCAANLVAYS-ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 212 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
.+ ++++|...+..+.+.. +++...+. .....+...+.+++|+..++.+.+.. +-+...|+.+..++.+.|+++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence 54 4788888888888764 23455544 44467777888999999998888753 457778888888888888887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
+|...++...+. .|+ .......+...+..+++...+......... +...+..+...+...|+.++|.+.+.+..
T Consensus 196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 776655443332 111 122333455567777788888877766543 34456667777788899999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011919 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 369 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+.. +-+...+..+...+...|+.++|.+.++.+.+.. | .+...|..+...+.
T Consensus 270 ~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P-~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 270 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--P-MRAAYLDDLRSKFL 321 (334)
T ss_dssp TTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--G-GGHHHHHHHHHHHH
T ss_pred hhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--c-ccHHHHHHHHHHHh
Confidence 553 1234667778888899999999999999999864 2 35567777765554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=3.4e-08 Score=84.61 Aligned_cols=96 Identities=13% Similarity=-0.017 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011919 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 210 (475)
+|..+..+|.+.|++++|+..|++..+.. +-+..+|+.+..++.+.|++++|++.|++..+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 33344445555666666666666555433 2344555555556666666666666665555433 233445555555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011919 211 NAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~ 228 (475)
..|++++|...|+...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 556666666555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1.7e-06 Score=75.11 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHhccC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHH
Q 011919 171 IRLFCEKGDMIAADELMKGMGLI----DLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSAL 240 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l 240 (475)
...|...|++++|.+.|.+.... +-++ -..+|..+..+|.+.|++++|...+++..+. |- .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566667777777776665431 1011 1234555666666666666666666654431 10 0112333444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhcC--CCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 241 LDGICR-LGSMERALELLGEMEKEG--GDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 241 l~~~~~-~g~~~~a~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
...|.. .|++++|.+.+++..+.. .+.++ -..++..+...+...|++++|+..|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444432 366666666665543210 00000 122344455555555555555555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.60 E-value=6.5e-05 Score=65.37 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=145.0
Q ss_pred cCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011919 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 206 (475)
|+..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444444566778788888888888887765 6777788888888888888776542 566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011919 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
..+.+......+ .+...+...+......++..|-..|.+++...+++...... +.+...++-++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~~- 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK- 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTC-
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhC-
Confidence 887777665443 22233334566666778888888888888888888765421 456667777888777754
Q ss_pred HHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011919 287 MKEALGILDRMEALGCAPNRV----------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~----------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.++..+.++.... ..|.. .|..++..|.+.|.+++|..+. ..+ .++..-....+..+.+.++
T Consensus 148 ~~kl~e~l~~~s~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N 219 (336)
T d1b89a_ 148 PQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN 219 (336)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSS
T ss_pred hHHHHHHHHhccc---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCC
Confidence 3444444333211 11111 1223334444444444443332 111 1222334455666677777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011919 357 LKEAEKLFSKMLASGVKPDGLACSVMIREL-------------CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
++...++.....+. .| ...+.++... -+.+++.....+++...+.+ +..+.+++...|
T Consensus 220 ~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-----~~~vn~al~~ly 290 (336)
T d1b89a_ 220 VELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-----NKSVNESLNNLF 290 (336)
T ss_dssp THHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC-----hHHHHHHHHHHH
Confidence 77666666655543 23 2233444333 34444444445554444433 345777888888
Q ss_pred HhcCCHHHHH
Q 011919 424 CRKNHSVEAA 433 (475)
Q Consensus 424 ~~~g~~~~A~ 433 (475)
...++++.-.
T Consensus 291 ie~~d~~~l~ 300 (336)
T d1b89a_ 291 ITEEDYQALR 300 (336)
T ss_dssp HHTTCHHHHH
T ss_pred hCcchhHHHH
Confidence 8888765533
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.8e-06 Score=67.73 Aligned_cols=123 Identities=14% Similarity=0.015 Sum_probs=66.4
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011919 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 252 (475)
.+...|+++.|++.|+++. +|+..+|..+..++...|++++|++.|++.++.. +-+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3445566666666665442 3455555556666666666666666666665543 2245555666666666666666
Q ss_pred HHHHHHHHHhcCCC------------CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 253 ALELLGEMEKEGGD------------CSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|.+.|++......+ ... ...++..+..++.+.|++++|.+.++.....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666655432100 000 1233444555566666666666666665544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.2e-06 Score=67.43 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=96.5
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011919 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|++..+.+ +.+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 45567888999999988764 3677788888889999999999999999888765 556778888888889999999
Q ss_pred HHHHHHHHHHHCCC--------------CcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011919 217 DACGLFKVMKRHGC--------------AAN-LVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 217 ~a~~~~~~m~~~g~--------------~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|+..|++...... .++ ..++..+..++.+.|++++|.+.+....+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988888765310 111 355667788899999999999999988873
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.4e-06 Score=62.68 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=79.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011919 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
-...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc---cchhhHHHHHHHHHHHc
Confidence 3456777888888888888888753 3356678888888888888888888888888865 34777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|++++|++.|++.++.. |-++..+..+.+
T Consensus 85 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 113 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 113 (117)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 88888888888888766 445555544433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=3.8e-06 Score=72.84 Aligned_cols=166 Identities=10% Similarity=-0.020 Sum_probs=100.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHH
Q 011919 205 MIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTS 276 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 276 (475)
....|...|++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..... ........++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 356777888888888888877652 1111 23567888888888888888888888765421 001112334555
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhH
Q 011919 277 VIQIFC-GKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCY 344 (475)
Q Consensus 277 li~~~~-~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~ 344 (475)
+...|. ..|++++|++.+++..+. +..+ -..++..+...+...|++++|...|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 357888888887765431 1111 1234566667777777777777777776654322211 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+..+...|+++.|.+.+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444555667777777777776643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=0.0003 Score=59.41 Aligned_cols=222 Identities=12% Similarity=-0.005 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
.+..|...+...+|+++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~~a~~~ 75 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----ccchhhc
Confidence 34444444555556666666666555554 34444444444443 345566666666555532 2223333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011919 277 VIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 277 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 3333222 34556666666665555421 11222222222 1234555555555555433 334455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 349 VELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 349 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..|.. ..+...+...++...+.| +......+-..+.. ..+.++|...|+...+.| +...+..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~LG 221 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNLG 221 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc-----CHHHHHHHH
Confidence 55554 345666666666666554 33444444433433 457888888888888876 445666677
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCC
Q 011919 421 LGLCR----KNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 421 ~~~~~----~g~~~~A~~~~~~m~~~~~ 444 (475)
..|.+ ..+.++|.++|++..+.|.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 76654 3478888888888888773
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=6e-06 Score=60.40 Aligned_cols=89 Identities=15% Similarity=-0.002 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..++...+.. +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34445555555555555554433 3344445555555555555555555555555543 224455555555555555555
Q ss_pred HHHHHHHHHHh
Q 011919 252 RALELLGEMEK 262 (475)
Q Consensus 252 ~a~~~~~~~~~ 262 (475)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.5e-06 Score=64.49 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..|.+.|++++|...|++.++.+.. +...|..+..+|...|++++|.+.|++.++.. +-+...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 3444555555555555555544322 34445555555555555555555555555432 123344555555555555555
Q ss_pred HHHHHHHHHHHc
Q 011919 394 EGFCLYEDIEKI 405 (475)
Q Consensus 394 ~a~~~~~~~~~~ 405 (475)
+|...+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=0.00041 Score=58.50 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 406 (475)
.+.++|...|.+..+.| +...+..|...|.+ ..+.++|.+.|++..+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 45666666666665554 23333444444433 225666666666666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=7.5e-06 Score=63.69 Aligned_cols=89 Identities=13% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011919 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+..++.. +-+..+|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555554443 3344445555555555555555555555555443 224445555555555555555
Q ss_pred HHHHHHHHHHh
Q 011919 252 RALELLGEMEK 262 (475)
Q Consensus 252 ~a~~~~~~~~~ 262 (475)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=4.1e-06 Score=68.10 Aligned_cols=97 Identities=9% Similarity=-0.094 Sum_probs=44.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011919 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33333444444444444444444444444332 3334444444444444455555554444444432 113444444555
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 011919 243 GICRLGSMERALELLGEME 261 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~ 261 (475)
+|.+.|++++|+..|+++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=4.8e-06 Score=67.62 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=62.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011919 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
|+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+...+.. |-+..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~---p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC---CCcHHHHHH
Confidence 445555555666666667777777666666553 3356666666666666677777777666666532 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011919 277 VIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+..+|.+.|++++|+..|++..+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666777777666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.7e-05 Score=61.16 Aligned_cols=75 Identities=7% Similarity=-0.259 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|+.+..+|.+.|++++|+..++...+.. |.+..+|..+..+|...|++++|+..|++.++.. |-++.....+..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc---ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444455555566666666665555543 2245555555556666666666666666655554 3344444444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=1e-05 Score=58.55 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011919 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..+++..+.. |.+..+|..+..+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHH
Confidence 34556777788888888888777653 1246677777777778888888888888777764 2367777778888888
Q ss_pred cCCHHHHHHHHHHHH
Q 011919 426 KNHSVEAAKLARFML 440 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~ 440 (475)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888777653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.3e-05 Score=58.92 Aligned_cols=97 Identities=23% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011919 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..++..+...+++++|.+.|++..+.+ +.+..++..+..++.+.++ +++|+.+++++.+....| ....+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHH
Confidence 456667777778888888888877654 3456677777777766443 445777777777654221 11346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011919 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|.+.|++++|++.|+++++..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHhC
Confidence 8888888888888888888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=9.8e-06 Score=58.68 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011919 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+.+.|++++|...|++.++... -+...|..+..++.+.|++++|+..|++..+.. |.+..+|..+...|...|++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHHCCCH
Confidence 33444444444444444444321 134444444444444444444444444444421 23344444444444444444
Q ss_pred HHHHHHHHH
Q 011919 288 KEALGILDR 296 (475)
Q Consensus 288 ~~a~~~~~~ 296 (475)
++|++.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.2e-05 Score=59.04 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 237 YSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..+..+|.+.|++++|.+.|+++.+
T Consensus 75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 75 VFYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0036 Score=54.09 Aligned_cols=278 Identities=7% Similarity=0.036 Sum_probs=149.8
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011919 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++......+.+.| ..+..+.|..++.... .|..++..+...++++.|.+++... -+..+|.
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k 73 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 73 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence 344566777788888 5677778888876442 2677888888889999988877642 2567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011919 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.+...|.+.....-|.- .......+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus 74 ~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 74 EVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 88899998877655422 122223455666788999999999999999999876432 567778888999998865
Q ss_pred CHHHHHHHHHHHHHCCCCcCHH----------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011919 214 RLEDACGLFKVMKRHGCAANLV----------AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.++..+.++.... .-|.. .|..++..|.+.|++++|..++ ... ++++.-....+..+.+
T Consensus 148 -~~kl~e~l~~~s~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~----~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 148 -PQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH----PTDAWKEGQFKDIITK 216 (336)
T ss_dssp -HHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS----TTTTCCHHHHHHHHHH
T ss_pred -hHHHHHHHHhccc---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc----chhhhhHHHHHHHHHc
Confidence 3444444433211 11211 1233444455555555554432 121 2333333445555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
..+++...++.....+. .| ...+.++......-+..+..+ .+.+.+++.....+
T Consensus 217 ~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~----------------------~~~k~~~l~li~p~ 270 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVN----------------------YFSKVKQLPLVKPY 270 (336)
T ss_dssp CSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHH----------------------HHHHTTCTTTTHHH
T ss_pred cCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHH----------------------HHHhcCCcHHHHHH
Confidence 66666555555544432 22 223344444333333333333 33334444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011919 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
++...+.| +....+++...|...++++.
T Consensus 271 Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 271 LRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 44443333 23456666666666666544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=0.00015 Score=55.52 Aligned_cols=79 Identities=6% Similarity=-0.220 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.+|..+..+|.+.|++++|++.++...+.. |.+..+|..+..++...|++++|+..|++.++.. |-+..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 356667778889999999999999998875 3478899999999999999999999999999887 556666555544
Q ss_pred HHH
Q 011919 457 HLK 459 (475)
Q Consensus 457 ~~~ 459 (475)
+..
T Consensus 144 ~~~ 146 (153)
T d2fbna1 144 CVN 146 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=9.8e-05 Score=57.75 Aligned_cols=88 Identities=5% Similarity=-0.223 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011919 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...+..+..++.+.|++++|+..++...+.. +.+..+|..+..++.+.|++++|++.|+++++.. |.+......+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456667778888999999999999998865 3478889999999999999999999999999887 56777777766
Q ss_pred HHHHhcCCHhHH
Q 011919 456 EHLKKSGDEELI 467 (475)
Q Consensus 456 ~~~~~~g~~~~a 467 (475)
.+..+.......
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666554444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00032 Score=54.72 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+|+.+..+|.+.|++++|+..+++.++.. +-+...+..+..+|...|++++|...|++..+.. | .+..+...+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P-~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--P-NNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--C-CCHHHHHHHHHH
Confidence 46777888889999999999998888763 2367788888888899999999999999988865 2 355555555444
Q ss_pred HHhc
Q 011919 423 LCRK 426 (475)
Q Consensus 423 ~~~~ 426 (475)
.-+.
T Consensus 140 ~~~~ 143 (170)
T d1p5qa1 140 QQRI 143 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=5.7e-06 Score=77.59 Aligned_cols=78 Identities=8% Similarity=-0.030 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+..+...+...|++++|...|++..+.. |.+...|+.|...+...|+..+|+..|.+.+... +|-+..+..+...+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~---P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 3334444444445555555555444432 1234444555544444555555555554444443 34444444444444
Q ss_pred Hh
Q 011919 459 KK 460 (475)
Q Consensus 459 ~~ 460 (475)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00018 Score=53.09 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----chhhHHHH
Q 011919 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV----DSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l 419 (475)
+..+...+.+.|++++|++.|.+.++.+ +.+...+..+..+|.+.|++++|...++++.+....... -..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456667778888888888888887653 235677777778888888888888888887764211000 02356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011919 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
...+...+++++|++.|++.+... +++.....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~ 117 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHH
Confidence 777778888888888888877654 44444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.00043 Score=54.31 Aligned_cols=126 Identities=10% Similarity=0.013 Sum_probs=83.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011919 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
......|++++|.+.|...+.....+- + ..+ ..+.+ +...-..+.. -....+..+..++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~---l----~~~-~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPV---L----DDL-RDFQF--VEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSST---T----GGG-TTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccc---c----ccC-cchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 456677888888888888876422110 0 000 00110 1111111110 01245667788889999999
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHHHH
Q 011919 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDKIVE 456 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l~~ 456 (475)
+|...++.+.+.. +.+...|..++.+|.+.|+..+|++.|+++.+ .|+.|++.+-...-.
T Consensus 85 ~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 85 AVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp HHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 9999999999875 35888999999999999999999999988754 588998876554333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00033 Score=51.66 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-----hhhHHHHHHHH
Q 011919 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-S-----GGCYSSLVVEL 351 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li~~~ 351 (475)
...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++.+++.+... . ..+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444432 1233444444444444444444444444443321100 0 12344445555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011919 352 VRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~ 369 (475)
...+++++|++.|.+...
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 555566666666555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.001 Score=51.53 Aligned_cols=75 Identities=7% Similarity=-0.245 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011919 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|.+.|++++... |.+......+...
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3334445556666666666666666543 2355556666666666666666666666666554 3444444443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00086 Score=51.07 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+|..+..+|.+.|++++|++.++.+.+.. |.++.+|..+..++...|++++|+..|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556666777777777777777766643 445666666777777777777777777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.1e-05 Score=75.70 Aligned_cols=93 Identities=10% Similarity=-0.118 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011919 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
.+..+...+.+.|+.++|...+...... ....++..+...+...|++++|...|++..+.. +-+...|+.|...
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp ---------------------CCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3444444444444444444444443331 011233334444444444444444444444431 1223344444444
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 011919 316 FCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~ 334 (475)
+...|+..+|...|.+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.0008 Score=52.71 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=76.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011919 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
........|++++|.+.|.+..... +.... ......+-+...-..+... ....+..+...+.+.|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3346677788888888888776531 11100 0000000011111111111 23466778888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011919 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
+++|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+
T Consensus 83 ~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 83 ASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred chHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888888753 5677888888888888888888888888764 3577777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.00032 Score=54.65 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011919 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|++.|+.+.+.. |.+......+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~---p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3344555556666666666666666666543 2355566666666666666666666666666532 23444444444
Q ss_pred HHH
Q 011919 279 QIF 281 (475)
Q Consensus 279 ~~~ 281 (475)
.+.
T Consensus 153 ~~~ 155 (169)
T d1ihga1 153 KVK 155 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.57 E-value=0.0032 Score=48.61 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
|..+..+|.+.|++++|+..++..+..+.. +...|..+..++...|++++|.+.|.++.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555555555555555555554322 3444555555555555555555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=0.00017 Score=60.63 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555555555543 22445555555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.38 E-value=8.5e-05 Score=62.57 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=27.1
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 011919 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 192 (475)
+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555555555443 23445555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=0.00085 Score=50.53 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHh
Q 011919 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG-----------SMERALELLGEMEK 262 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~ 262 (475)
++|+..|++.++.. +.+..+|..+..+|...| .+++|.+.|++..+
T Consensus 58 ~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 58 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 44555555555443 224444544544444332 23455555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.13 E-value=0.0008 Score=50.70 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcC
Q 011919 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-----------HSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~ 443 (475)
+++|+..+++..+.. |.+..+|..+..+|...| .+++|.+.|++.++..
T Consensus 57 ~~~Ai~~~~kAl~l~---P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 57 IQEAITKFEEALLID---PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc---chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 345555555555543 224555555555554433 2455666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.08 E-value=0.0033 Score=47.83 Aligned_cols=95 Identities=9% Similarity=-0.041 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-
Q 011919 348 VVELVRTKRLKEAEKLFSKMLASG-VKPD----------GLACSVMIRELCLGGQVLEGFCLYEDIEKIG-----FLSS- 410 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~- 410 (475)
...+...|++++|++.|++.++.. -.|+ ...|+.+..+|...|++++|...+++..+.. ..+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 334455677777777777666421 0111 2456667777778888888887777766421 1110
Q ss_pred --CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011919 411 --VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 411 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
....+|..+..+|...|++++|++.|++.++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01235677888888999999999999887753
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.0082 Score=45.48 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011919 241 LDGICRLGSMERALELLGEMEKEGGDCSP---------NVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
...+.+.|++++|++.|++..+.....+. ....|+.+..+|.+.|++++|...+++..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 34455566777777777666552211110 12345555555666666666655555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0082 Score=40.99 Aligned_cols=71 Identities=8% Similarity=-0.088 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011919 381 VMIRELCLGGQVLEGFCLYEDIEKIG---FLS-SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+-..+.+.|++++|...|++..+.. ..+ .....++..+..++.+.|++++|++.++++++.. |-++..+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 34444555555555555555544321 000 0123455566666666666666666666666655 33344433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.63 E-value=0.057 Score=37.85 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011919 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..++.+.+.|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34555566666666666666666655533 55666666666666666666666666666666664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.017 Score=39.22 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011919 204 SMIKGFCNAGRLEDACGLFKVMKRHG-----CAAN-LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+...+.+.|++++|...|++..+.. ..++ ..++..+..+|.+.|++++|++.++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34444444455555544444443210 0111 23444455555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.20 E-value=0.11 Score=37.62 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----c
Q 011919 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----K 426 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 426 (475)
.+.++|++++++..+.| +......|-..|.. ..+.++|.++|++..+.| +......|...|.. .
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~Lg~~y~~G~gv~ 108 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVV 108 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----cchHHHHHHHHHHcCCccC
Confidence 45566666666666554 22333333333332 345677777777777765 33445555555544 3
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011919 427 NHSVEAAKLARFMLKKR 443 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~ 443 (475)
.+.++|.++|++..+.|
T Consensus 109 ~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 46777777777777666
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.18 E-value=0.11 Score=37.70 Aligned_cols=46 Identities=7% Similarity=-0.116 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 011919 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEK 262 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 262 (475)
+.++|.+.+++..+.| +...+..|...|.. ..+.++|.++|++..+
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 87 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence 3444444444444443 23333333333332 2334455555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.01 E-value=0.34 Score=33.88 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=81.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011919 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
.-.|..++..+++.+.... .+..-||.++.-....-+-+...++++.+-+. .++.|-. -...++..+...+
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~-Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQ-NLKSVVECGVINN---- 83 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCS-CTHHHHHHHHHTT----
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhh-cHHHHHHHHHHhc----
Confidence 3456777777777776664 25666677776666666777777777666542 1111100 0112222222222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
.+...+...+......|+-+.-.++++++.+.+ .+++...-.+..+|.+.|...++-+++.+.-+
T Consensus 84 --------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 84 --------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp --------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 133445555666667777777777777766533 44556666677777777777777777777777
Q ss_pred CCCC
Q 011919 370 SGVK 373 (475)
Q Consensus 370 ~~~~ 373 (475)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 6654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=4.5 Score=35.66 Aligned_cols=347 Identities=8% Similarity=-0.040 Sum_probs=181.6
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh
Q 011919 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 165 (475)
..++.+.....-...+..+...++++.....+. ..+.+...-.....+....|+..+|...+..+-..|. ....
T Consensus 64 ~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~ 137 (450)
T d1qsaa1 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPN 137 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCch
Confidence 344444444444555667777777765443321 2244555545566677777877777776665543331 2222
Q ss_pred hHHHHHHHHH------------------hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011919 166 IYNNVIRLFC------------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 166 ~~~~ll~~~~------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
....+...+. ..|+...|..+...+.. .........+..... ...+.... ..
T Consensus 138 ~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~---p~~~~~~~---~~ 207 (450)
T d1qsaa1 138 ACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANN---PNTVLTFA---RT 207 (450)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHC---GGGHHHHH---HH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhC---hHhHHHHH---hc
Confidence 3333333333 33444444443332211 111222233332221 11121111 11
Q ss_pred CCCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcC
Q 011919 228 HGCAANLVAYSALLDGICR--LGSMERALELLGEMEKEGGDCSPNVVTYTSVI----QIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 228 ~g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
. ..+......+..++.+ ..+.+.|...+....... ..+...+..+- ......+..+.+...+......+
T Consensus 208 ~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 208 T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ---QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc---cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 1 2233333333344433 357788888888776642 12222222222 22234566777888877766654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011919 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
.+.......+......+++..+...++.|.... ........-+..++...|+.++|...|..... .++ -|..
T Consensus 283 --~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~ 354 (450)
T d1qsaa1 283 --QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPM 354 (450)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHH
T ss_pred --cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHH
Confidence 344444555666677788888888888774322 12233345567888888999999998888763 233 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011919 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-----HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|. + .+.|..-. +..... +...... --.-+..+...|...+|...+..+... .++.....+..
T Consensus 355 LA-a-~~Lg~~~~-------~~~~~~-~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~ 421 (450)
T d1qsaa1 355 VA-A-QRIGEEYE-------LKIDKA-PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (450)
T ss_dssp HH-H-HHTTCCCC-------CCCCCC-CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HH-H-HHcCCCCC-------CCcCCC-CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 32 2 22222100 000000 0000010 112356677889999999999888643 35667778888
Q ss_pred HHHhcCCHhHHhhccccC
Q 011919 457 HLKKSGDEELITNLPKIG 474 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~~a 474 (475)
...+.|.++.+......+
T Consensus 422 lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 422 YAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHTTCHHHHHHHHHHT
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 899999999887765443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.19 E-value=0.81 Score=30.17 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011919 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 172 (475)
+.-.+.+-++.+......|++....+.+.+|.+.+++..|+.+|+..+... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 455667777888888889999999999999999999999999998877532 234556776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=1.7 Score=30.39 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011919 373 KPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+..|--...-++.+. .+.++++.+++++.+.+ |......+-.|..+|.+.|++++|.+.++.+++..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45555555555555554 45678888888888754 22124677778888999999999999999998876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.80 E-value=2.2 Score=29.71 Aligned_cols=50 Identities=6% Similarity=0.158 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011919 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
++++++.+++++.+.+..-....+..|..+|.+.|++++|.+.++.+++.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44566677776665432111234455666667777777777777777654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.93 E-value=2.4 Score=27.84 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011919 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++++.++.+.- .+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~---~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CcHHHHHHHH
Confidence 4445566666666666777777777777777777777777777777776531 1334555554
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.00 E-value=5.8 Score=28.52 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=63.0
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011919 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.++++.|.++ ..+.|.+-....|..-++.+...|++.+|..+-...+. |+-.+..|.+.+-.+-...|...-.+.+
T Consensus 12 l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~Y 87 (157)
T d1bpoa1 12 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 87 (157)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHH
Confidence 3555555333 33445555566666666777777778777777766554 4455666666555444445566666666
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011919 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
|..+.+.| ..|..---.+++.....|+.+-..+.
T Consensus 88 F~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 88 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHH
Confidence 66666655 34444334455555555555544433
|