Citrus Sinensis ID: 011938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
Protein Sequence
MSCSSNGSDDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRNSGLLDALIHESNTLKNHSSDKSSNSSSVTPDVADSCTRNFCETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETFGKHLHLILIITLKGHSGTFESSFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mscssngsddmmlsndqtdsplmdeggggtargvilkkgpwtsaeDAILIDYVKkhgegnwnavqknsglfrcgkscrlrwanhlrpnlkkgaftQEEEQMIVELHAKMGNKWARMAahlpgrtdneIKNYWNTRIKRRqraglplyppevsfqALQESQcqninginsgdkghhdllqangyeipdvVFDSLkanqgvlpyvpdipditaSTMLMKglgsqycsfvppvmhrpkrlresvplfsayggsvknefsfdqfhndtsdkiarsfglsfpldpdttpkapesfgmlqgshtlsngnfsaskpnlgavklelpslqytetdlgswgtsspqpllETVDafiqsppptgtldsgcpsprnsgllDALIHEsntlknhssdkssnsssvtpdvadsctrnfcetewedysdplsplghsatslfnectplsasgssldeqapvetfGKHLHLILIITLkghsgtfessfl
Flexible Loop (DISEMBL)
mscssngsddmMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHlrpnlkkgaftQEEEQMIVELHAKMGNKWARMAahlpgrtdneiKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRNSGLLDALIHESNTLknhssdkssnsssvtpdvadsCTRNFCETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETFGKHLHLILIITlkghsgtfessfl
Low Complexity Region (SEG)
MSCSSNGSDDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRNSGLLDALIHESNTLKNHssdkssnsssVTPDVADSCTRNFCETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETFGKhlhliliiTLKGHSGTFESSFL
Disordered region (IsUnstruct)
*******************************RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFH*******************************************************************************************************************************************CTRNFCETEWEDY*********************************VETFGKHLHLILIITLKGH*********
Disordered Region (DISOPRED)
**********************************ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK**************************************************************************************************************************************************************************************************************D***********************LLDALI****************************************SDPLSPLGHSATSLFN**********************KHLHLILIITL************
Disordered Region (DISEMBL)
**********MMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPP*********PSPRNSGLLDALIHESNT*********************SCTRNFCETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETFGKHLHLILIITLKGHSGTFESSFL
Disordered Region (DISPRO)
********DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYP***********************************EIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLD********ESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRNSGLLDALIHESNT*****************************TEWEDYSDPLSPLGHSATSLFNEC*PL*****SLDEQAPVETFGKHLHLILIITLKGH*********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCSSNGSDDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRNSGLLDALIHESNTLKNHSSDKSSNSSSVTPDVADSCTRNFCETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETFGKHLHLILIITLKGHSGTFESSFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	474	2.2.26 [Sep-21-2011]
Q0JIC2	553	Transcription factor GAMY	yes	no	0.883	0.757	0.484	1e-109
A2WW87	553	Transcription factor GAMY	N/A	no	0.883	0.757	0.482	1e-109
P80073	421	Myb-related protein Pp2 O	N/A	no	0.229	0.258	0.596	6e-38
Q9S9K9	257	Transcription factor MYB3	no	no	0.219	0.404	0.615	1e-37
P81392	316	Myb-related protein 306 O	N/A	no	0.219	0.329	0.596	3e-37
Q38851	236	Transcription repressor M	no	no	0.215	0.432	0.627	4e-37
Q9SPG2	366	Transcription factor MYB2	no	no	0.225	0.292	0.607	6e-37
Q9FLR1	336	Transcription factor MYB2	no	no	0.223	0.315	0.613	8e-37
Q9SPG5	338	Transcription factor MYB7	no	no	0.219	0.307	0.605	1e-36
Q9SZP1	282	Transcription repressor M	no	no	0.215	0.361	0.617	2e-36

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/460 (48%), Positives = 290/460 (63%), Gaps = 41/460 (8%)

Query: 8   SDDMMLSNDQTDSPLMDEG--GGGTARG--VILKKGPWTSAEDAILIDYVKKHGEGNWNA 63
           SD  M+  +Q DSP+ D+G  GG   RG    LKKGPWTSAEDAIL+DYVKKHGEGNWNA
Sbjct: 8   SDCDMIHQEQMDSPVADDGSSGGSPHRGGGPPLKKGPWTSAEDAILVDYVKKHGEGNWNA 67

Query: 64  VQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGR 123
           VQKN+GLFRCGKSCRLRWANHLRPNLKKGAFT EEE++I++LH+KMGNKWARMAAHLPGR
Sbjct: 68  VQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGR 127

Query: 124 TDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGY 183
           TDNEIKNYWNTRIKR QRAGLP+YP  V  Q+  E Q Q  +  + G+   +DLL ANG 
Sbjct: 128 TDNEIKNYWNTRIKRCQRAGLPIYPTSVCNQSSNEDQ-QCSSDFDCGENLSNDLLNANGL 186

Query: 184 EIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPL 243
            +PD   D+  AN   LPY P +  ++ S +L +   S+ CSF+  V ++   L++S  +
Sbjct: 187 YLPDFTCDNFIANSEALPYAPHLSAVSISNLLGQSFASKSCSFMDQV-NQTGMLKQSDGV 245

Query: 244 FSAYGGSVKNEF-SFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESF-GMLQGSHTLSN 301
                 ++     S DQF ND S+K+ ++ G  +  + ++T K    F G L GSH   N
Sbjct: 246 LPGLSDTINGVISSVDQFSND-SEKLKQAVGFDYLHEANSTSKIIAPFGGALNGSHAFLN 304

Query: 302 GNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLL---ETVDAFIQSPPPTGTLDS 358
           GNFSAS+P  G +K+ELPSLQ TE+D  SW   +  P L   E VD ++QSP  T ++ S
Sbjct: 305 GNFSASRPTSGPLKMELPSLQDTESDPNSWLKYTVAPALQPTELVDPYLQSPAATPSVKS 364

Query: 359 GCPSPRNSGLLDALIHESNTLKNHSSDKSS------------NSSSVTPDVADSCTRNFC 406
            C SPRNSGLL+ LIHE+ TL++  + ++S            N++ ++P+       + C
Sbjct: 365 ECASPRNSGLLEELIHEAQTLRSGKNQQTSVISSSSSVGTPCNTTVLSPEF------DMC 418

Query: 407 ETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAP 446
           +  WE+                N+C P   SG+S  E  P
Sbjct: 419 QEYWEE---------QHPGPFLNDCAPF--SGNSFTESTP 447

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/460 (48%), Positives = 290/460 (63%), Gaps = 41/460 (8%)

Query: 8   SDDMMLSNDQTDSPLMDEG--GGGTARG--VILKKGPWTSAEDAILIDYVKKHGEGNWNA 63
           SD  M+  +Q DSP+ D+G  GG   RG    LKKGPWTSAEDAIL+DYVKKHGEGNWNA
Sbjct: 8   SDCEMIHQEQMDSPVADDGSSGGSPHRGGGPPLKKGPWTSAEDAILVDYVKKHGEGNWNA 67

Query: 64  VQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGR 123
           VQKN+GLFRCGKSCRLRWANHLRPNLKKGAFT EEE++I++LH+KMGNKWARMAAHLPGR
Sbjct: 68  VQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGR 127

Query: 124 TDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGY 183
           TDNEIKNYWNTRIKR QRAGLP+YP  V  Q+  E Q Q  +  + G+   +DLL ANG 
Sbjct: 128 TDNEIKNYWNTRIKRCQRAGLPIYPTSVCNQSSNEDQ-QCSSDFDCGENLSNDLLNANGL 186

Query: 184 EIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGSQYCSFVPPVMHRPKRLRESVPL 243
            +PD   D+  AN   LPY P +  ++ S +L +   S+ CSF+  V ++   L++S  +
Sbjct: 187 YLPDFTCDNFIANSEALPYAPHLSAVSISNLLGQSFASKSCSFMDQV-NQTGMLKQSDGV 245

Query: 244 FSAYGGSVKNEF-SFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESF-GMLQGSHTLSN 301
                 ++     S DQF ND S+K+ ++ G  +  + ++T K    F G L GSH   N
Sbjct: 246 LPGLSDTINGVISSVDQFSND-SEKLKQAVGFDYLHEANSTSKIIAPFGGALNGSHAFLN 304

Query: 302 GNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLL---ETVDAFIQSPPPTGTLDS 358
           GNFSAS+P  G +K+ELPSLQ TE+D  SW   +  P L   E VD ++QSP  T ++ S
Sbjct: 305 GNFSASRPTSGPLKMELPSLQDTESDPNSWLKYTVAPALQPTELVDPYLQSPAATPSVKS 364

Query: 359 GCPSPRNSGLLDALIHESNTLKNHSSDKSS------------NSSSVTPDVADSCTRNFC 406
            C SPRNSGLL+ L+HE+ TL++  + ++S            N++ ++P+       + C
Sbjct: 365 ECASPRNSGLLEELVHEAQTLRSGKNQQTSVISSSSSVGTPCNTTVLSPEF------DMC 418

Query: 407 ETEWEDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAP 446
           +  WE+                N+C P   SG+S  E  P
Sbjct: 419 QEYWEE---------QHPGPFLNDCAPF--SGNSFTESTP 447

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  159 bits (401), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 88/109 (80%)

Query: 34  VILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGA 93
           V L++GPWTS ED  L+ ++  +G   W A+ K +GL RCGKSCRLRW N+LRP+LK+G 
Sbjct: 10  VGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGI 69

Query: 94  FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRA 142
           F++ EE +I++LHA +GN+W+R+AA LPGRTDNEIKNYWNTR+K+R R+
Sbjct: 70  FSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRS 118

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 87/104 (83%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           + KG WT  ED +L+DY++KHGEG W ++ + +GL RCGKSCRLRW N+LRP+LK+G FT
Sbjct: 12  MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFT 71

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +EE+++I++LH+ +GNKW+ +A  LPGRTDNEIKNYWNT IKR+
Sbjct: 72  EEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 84/104 (80%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           +KKGPWT  ED IL+ Y+++HG GNW A+  N+GL RC KSCRLRW N+LRP +K+G FT
Sbjct: 12  VKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFT 71

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           + EE+MI+ L A +GN+WA +A++LP RTDN+IKNYWNT +K++
Sbjct: 72  EHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 84/102 (82%)

Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
           KG WT  ED  L+DY++ HGEG W ++ K++GL RCGKSCRLRW N+LRP+LK+G FT +
Sbjct: 14  KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query: 98  EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           E+Q+I++LH+ +GNKW+ +A  LPGRTDNEIKNYWNT IKR+
Sbjct: 74  EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 81/107 (75%)

Query: 33  GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
           G  LKKG WT+ ED  LI Y+  HGEG W  + + +GL RCGKSCRLRW N+L+P +K+G
Sbjct: 9   GEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNYLKPEIKRG 68

Query: 93  AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
            F+ EEEQ+I+ LHA  GNKW+ +A HLP RTDNEIKNYWNT +K+R
Sbjct: 69  EFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKR 115

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1

 Score =  155 bits (391), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 83/106 (78%)

Query: 33  GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
           G  LKKG WT+ ED  LI Y+ +HGEG W  + + +GL RCGKSCRLRWAN+L+P++K+G
Sbjct: 9   GEGLKKGAWTAEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYLKPDIKRG 68

Query: 93  AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138
            F+ EEEQ+I+ LHA  GNKW+ +A HLP RTDNEIKNYWNT +K+
Sbjct: 69  EFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKK 114

Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 81/104 (77%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           LKKG WT+ ED  LI Y+  HGEG W  + + +GL RCGKSCRLRW N+L+P++K+G F+
Sbjct: 12  LKKGAWTTEEDKKLISYIHDHGEGGWRDIPEKAGLKRCGKSCRLRWTNYLKPDIKRGEFS 71

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
            EEEQ+I+ LHA  GNKW+ +A HLP RTDNE+KNYWNT +K+R
Sbjct: 72  YEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKR 115

Plays a role in determining the spatial distribution of aliphatic glucosinolates (GLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 83/102 (81%)

Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
           KG WT  ED  L+ Y+K HGEG W ++ K +GL RCGKSCRLRW N+LRP+LK+G FT+E
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 98  EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           E+++I++LH+ +GNKW+ +A  LPGRTDNEIKNYWNT I+R+
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
225449813	559	PREDICTED: transcription factor GAMYB [V	0.940	0.797	0.723	0.0
224075906	558	predicted protein [Populus trichocarpa]	0.943	0.801	0.710	1e-178
255569211	556	r2r3-myb transcription factor, putative	0.936	0.798	0.723	1e-178
224053092	402	predicted protein [Populus trichocarpa]	0.827	0.975	0.722	1e-161
356546292	595	PREDICTED: transcription factor GAMYB-li	0.921	0.734	0.631	1e-155
356554925	553	PREDICTED: transcription factor GAMYB-li	0.913	0.783	0.639	1e-154
334854611	530	GAMYB2 protein [Glycine max]	0.913	0.816	0.639	1e-154
334854609	536	GAMYB1 protein [Glycine max]	0.921	0.815	0.626	1e-153
449446327	552	PREDICTED: transcription factor GAMYB-li	0.930	0.798	0.603	1e-141
356510373	510	PREDICTED: transcription factor GAMYB-li	0.926	0.860	0.592	1e-137

>gi|225449813|ref|XP_002275846.1| PREDICTED: transcription factor GAMYB [Vitis vinifera] gi|298205121|emb|CBI40642.3| unnamed protein product [Vitis vinifera]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/460 (72%), Positives = 372/460 (80%), Gaps = 14/460 (3%)

Query: 1   MSCSSNGSDDMMLSNDQTDSPLMDEGGGGTARG--VILKKGPWTSAEDAILIDYVKKHGE 58
           MS  +N S+D MLS DQT SPL+DEG    + G  ++LKKGPWTS+EDAIL++YVKKHGE
Sbjct: 1   MSHLTNESEDGMLSKDQTGSPLIDEGNSSGSAGGGIVLKKGPWTSSEDAILVEYVKKHGE 60

Query: 59  GNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAA 118
           GNWNAVQK+SGLFRCGKSCRLRWANHLRPNLKKGAFT EEE++I+ELHAKMGNKWARMAA
Sbjct: 61  GNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIELHAKMGNKWARMAA 120

Query: 119 HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQES-QCQNINGINSGDKGHHDL 177
           HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEV FQALQES Q QN  GIN GDK HHDL
Sbjct: 121 HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCFQALQESQQIQNTGGINGGDKVHHDL 180

Query: 178 LQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLG-SQYCSFVPPVMHRPKR 236
           LQ N YEIPDV+ D  KANQ   PYVPD P+++ S+MLMKG G SQYC F+ P MHR KR
Sbjct: 181 LQTNSYEIPDVILDGFKANQDAFPYVPDFPNLSTSSMLMKGFGSSQYCGFMAPTMHRQKR 240

Query: 237 LRESVPLFSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQG 295
           +RES  LF  Y  + +N    FDQ  +DT DKIA+SFGL +P DPD T K P  F  +QG
Sbjct: 241 VRESPALFPGY--NERNGIPLFDQIQDDTGDKIAQSFGLPYPFDPDPTNKDPLPFAGMQG 298

Query: 296 SHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGT-SSPQPLLETVDAFIQSPPPTG 354
           SH L NGNFSASKP  G VKLELPSLQY ETDLG WGT SSP PLLE+VDAFIQS PP+G
Sbjct: 299 SHALLNGNFSASKPISGPVKLELPSLQYLETDLGGWGTSSSPPPLLESVDAFIQS-PPSG 357

Query: 355 TLDSGCPSPRNSGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEW 410
           T+   C SPRNSGLLDAL+HE+ T+   KNH SDKS+NSS+VTP D+ADSC  N CETEW
Sbjct: 358 TVQLECLSPRNSGLLDALLHEAKTISSGKNHLSDKSANSSTVTPGDLADSCL-NMCETEW 416

Query: 411 EDYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETF 450
           EDY DP+SPLGHS TS+F+ECTP+SASGSSLDE  P ETF
Sbjct: 417 EDYGDPISPLGHSTTSIFSECTPISASGSSLDEHPPSETF 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075906|ref|XP_002304822.1| predicted protein [Populus trichocarpa] gi|222842254|gb|EEE79801.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/459 (71%), Positives = 377/459 (82%), Gaps = 12/459 (2%)

Query: 1   MSCSSNGSDDMMLSNDQTDSPLMDEGG-GGTARGVILKKGPWTSAEDAILIDYVKKHGEG 59
           MS +++ S+D M+S DQT  PL +EG  GG+  GV+LKKGPWTSAEDAILI+YVKKHGEG
Sbjct: 1   MSRTTSESEDGMISKDQTGLPLGEEGSYGGSTNGVVLKKGPWTSAEDAILIEYVKKHGEG 60

Query: 60  NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAH 119
           NWN+VQK+SGLFRCGKSCRLRWANHLRPNLKKGAFT EEEQ+I+ELHAKMGNKWARMAAH
Sbjct: 61  NWNSVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTHEEEQLIIELHAKMGNKWARMAAH 120

Query: 120 LPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQES-QCQNINGINSGDKGHHDLL 178
           LPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVS Q LQ S QC +ING++SG+KG HD+L
Sbjct: 121 LPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQTLQGSQQCLDINGMDSGNKGQHDIL 180

Query: 179 QANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKRL 237
           Q + Y IPDV+FD+LK N+ +LPYVP++PDI+AS++LMKGL  SQY SF+ P MHR KRL
Sbjct: 181 QTHNYGIPDVMFDNLKTNRSILPYVPELPDISASSILMKGLCSSQYGSFMSPTMHRQKRL 240

Query: 238 RESVPLFSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGS 296
           RE+  L S++ G +KN+F  FDQF +   DK A+ FGLSFP DPD+  K PE FG  QGS
Sbjct: 241 REATTLLSSFSGGMKNDFHLFDQFQD--GDKAAQYFGLSFPFDPDSATKNPEIFGENQGS 298

Query: 297 HTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTS-SPQPLLETVDAFIQSPPPTGT 355
           HTL+NG+FSASKP   AVK ELPSLQY ETDLG WG S SP PL+E+VD FIQS PPTGT
Sbjct: 299 HTLANGDFSASKPTSEAVKFELPSLQYAETDLGGWGASCSPSPLIESVDTFIQS-PPTGT 357

Query: 356 LDSGCPSPRNSGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWE 411
           ++S  PSPRNSGLLDAL++E+ TL   KN SSDKSSNSS++TP D AD    N  ETEWE
Sbjct: 358 VESNFPSPRNSGLLDALLYEARTLSSAKNQSSDKSSNSSTITPGDNADCSALNISETEWE 417

Query: 412 DYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETF 450
           DY DP+SPLGH A SLF+ECTP+SASGSSLDE  P ET 
Sbjct: 418 DYGDPISPLGHPAASLFSECTPISASGSSLDESPPTETL 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569211|ref|XP_002525574.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223535153|gb|EEF36833.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/459 (72%), Positives = 378/459 (82%), Gaps = 15/459 (3%)

Query: 1   MSCSSNGSDDMMLSNDQTDSPLMDEG--GGGTARGVILKKGPWTSAEDAILIDYVKKHGE 58
           MS ++N SDD + S D+ DSPL + G  GG    G +LKKGPWTSAEDAILI+YVKKHGE
Sbjct: 1   MSHTTNESDDGLFSKDRIDSPLAEGGNCGGSANGGAMLKKGPWTSAEDAILIEYVKKHGE 60

Query: 59  GNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAA 118
           GNWNAVQK+SGL RCGKSCRLRWANHLRPNLKKGAFTQEEEQ+I+ELHAKMGNKWARMAA
Sbjct: 61  GNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTQEEEQLIIELHAKMGNKWARMAA 120

Query: 119 HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQES-QCQNINGINSGDKGHHDL 177
           HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQES Q   I GIN+GDK H DL
Sbjct: 121 HLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESHQGLTIGGINTGDKVHGDL 180

Query: 178 LQANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKR 236
           L+ NGYEIPDV+FDSLKA+QG+ PYVP++ DIT S+ML+KGL  SQY SF+ P  HR KR
Sbjct: 181 LRNNGYEIPDVIFDSLKASQGISPYVPELADITTSSMLIKGLSSSQYGSFMSPSAHRQKR 240

Query: 237 LRESVPLFSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQG 295
           LRES      Y G++K+EF  FDQF +++ DK+A+SFGLSFP DPD T K P+SFG  QG
Sbjct: 241 LRESTTFIPGYSGNIKSEFPLFDQFQDESCDKVAQSFGLSFPFDPDPT-KNPQSFGENQG 299

Query: 296 SHTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGT 355
           SHTL+NG+FS SK   G VKLELPSLQY ETDLGSWGTS P PLLET+D FIQS PPT  
Sbjct: 300 SHTLANGDFSTSKLTSGPVKLELPSLQYPETDLGSWGTSPP-PLLETLDNFIQS-PPTAI 357

Query: 356 LDSGCPSPRNSGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWE 411
           ++S   SPRNSGLLDAL++E+  L   KNHSS+KSSNSS+VTP ++A+    N CETEWE
Sbjct: 358 IES---SPRNSGLLDALLYEAKALSSAKNHSSEKSSNSSTVTPGELAECSAINICETEWE 414

Query: 412 DYSDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETF 450
           DY DPLSPLGH+ATSLF+ECTP+SASGSSLDE  P +TF
Sbjct: 415 DYGDPLSPLGHTATSLFSECTPISASGSSLDEPPPTDTF 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053092|ref|XP_002297703.1| predicted protein [Populus trichocarpa] gi|222844961|gb|EEE82508.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/403 (72%), Positives = 335/403 (83%), Gaps = 11/403 (2%)

Query: 1   MSCSSNGSDDMMLSNDQTDSPLMDEGG-GGTARGVILKKGPWTSAEDAILIDYVKKHGEG 59
           MS  ++ S+D ++SN+Q +SPL +EG   G+A G +LKKGPWTSAEDAILI+YVKKHGEG
Sbjct: 1   MSRMTSESEDGIVSNNQIESPLGEEGNYCGSANGGVLKKGPWTSAEDAILIEYVKKHGEG 60

Query: 60  NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAH 119
           NWNAVQK+SGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQ+I+ELHAKMGNKWARMAAH
Sbjct: 61  NWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQLIIELHAKMGNKWARMAAH 120

Query: 120 LPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLL 178
           LPGRTDNEIKNYWNTRIKR QRAGLPLYPPE S QALQESQ C NI+ I   +K  HD L
Sbjct: 121 LPGRTDNEIKNYWNTRIKRHQRAGLPLYPPEASLQALQESQRCLNIDRIEIRNKSQHDTL 180

Query: 179 QANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGS-QYCSFVPPVMHRPKRL 237
           Q+N Y IP+V+FD+L  +Q +LPYVP++PDITAS+MLMKGL S QY SF+ P+MHR KRL
Sbjct: 181 QSNSYGIPNVMFDNLTPHQSILPYVPELPDITASSMLMKGLSSFQYGSFMSPIMHRQKRL 240

Query: 238 RESVPLFSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGS 296
           RE+  L S++GG +KNEF  FDQF +   DK ++SFGL FP D D+T K PE FG  QGS
Sbjct: 241 REATTLLSSFGGGMKNEFHLFDQFQD--VDKASQSFGLPFPFDYDSTTKNPEFFGENQGS 298

Query: 297 HTLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTS-SPQPLLETVDAFIQSPPPTGT 355
           HTL+NGNFSASKP   AVKLELPSLQY+ETDLG WG S SP PL+E+VD FIQS PPTGT
Sbjct: 299 HTLANGNFSASKPTSEAVKLELPSLQYSETDLGGWGPSCSPSPLIESVDTFIQS-PPTGT 357

Query: 356 LDSGCPSPRNSGLLDALIHESNTL---KNHSSDKSSNSSSVTP 395
           ++S CPSPRNSGLLDAL+HE+ TL   KN  SDKSSNSS+VTP
Sbjct: 358 VESDCPSPRNSGLLDALLHEAKTLSSAKNQLSDKSSNSSTVTP 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546292|ref|XP_003541563.1| PREDICTED: transcription factor GAMYB-like [Glycine max]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/453 (63%), Positives = 340/453 (75%), Gaps = 16/453 (3%)

Query: 9   DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNS 68
           +D +L ND + + L DE   G+A G++LKKGPWTS ED IL+DYVKKHGEGNWNAVQK++
Sbjct: 68  EDEVLPNDMSGAQLNDESYEGSA-GIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHT 126

Query: 69  GLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEI 128
           GLFRCGKSCRLRWANHLRPNLKKGAF  EEE++I ELHAKMGNKWARMAAHLPGRTDNEI
Sbjct: 127 GLFRCGKSCRLRWANHLRPNLKKGAFAAEEERLIAELHAKMGNKWARMAAHLPGRTDNEI 186

Query: 129 KNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLLQANGYEIPD 187
           KNYWNTRIKRRQRAGLPLYPPEVS  ALQESQ  Q+  G+N GDK H D LQ N YEI D
Sbjct: 187 KNYWNTRIKRRQRAGLPLYPPEVSLHALQESQHSQSTGGLNGGDKMHPDFLQKNSYEIHD 246

Query: 188 VVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKRLRES-VPLFS 245
            +FDSLK NQG+LPYV ++ DI+     +KGL  SQYCSFVPP   + KRL+ES +P   
Sbjct: 247 AIFDSLKDNQGILPYVHELSDISVYGNKLKGLDSSQYCSFVPPTSPKRKRLKESTIPFID 306

Query: 246 AYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFS 305
           +     K+ + FDQ  ++ SDKIA+SFG+  PLDP  +  +   +     SH+LSNGN S
Sbjct: 307 SCAMKKKDLYPFDQIQDNNSDKIAQSFGMQAPLDPGLSSHSSMCY-----SHSLSNGNSS 361

Query: 306 ASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRN 365
            SKP   A+KLELPSLQY E DLGSWG+S P  LLE+VD F+QSP    TL+S C SP+N
Sbjct: 362 TSKP-YEAMKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTAISTLESDCSSPQN 420

Query: 366 SGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDYSDPLSPLG 421
           SGLLDAL++++ T+   KNH SDKSSNSS+ TP D ADS   N  ETEWEDY+DP+SP G
Sbjct: 421 SGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSILNVYETEWEDYADPVSPFG 480

Query: 422 HSATSLFNECTPLSASGSSLDEQAPVETFGKHL 454
             ATS+ NEC  L A+ +SL+ Q PV+TF  +L
Sbjct: 481 --ATSILNECPALRANANSLNGQLPVQTFTGNL 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554925|ref|XP_003545791.1| PREDICTED: transcription factor GAMYB-like [Glycine max]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/449 (63%), Positives = 341/449 (75%), Gaps = 16/449 (3%)

Query: 9   DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNS 68
           +D +L ND + + L DE   G A G++LKKGPWTS ED IL+DYVKKHGEGNWNAVQK++
Sbjct: 9   EDEVLPNDMSGTQLNDESYEGGA-GIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHT 67

Query: 69  GLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEI 128
           GL RCGKSCRLRWANHLRPNLKKGAFT EEE++I ELHAKMGNKWARMAAHLPGRTDNEI
Sbjct: 68  GLLRCGKSCRLRWANHLRPNLKKGAFTAEEERVIAELHAKMGNKWARMAAHLPGRTDNEI 127

Query: 129 KNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLLQANGYEIPD 187
           KNYWNTRIKR QRAGLPLYPPEVS QALQESQ  Q+  G+N G+K H D LQ N +EI D
Sbjct: 128 KNYWNTRIKRCQRAGLPLYPPEVSLQALQESQHSQSSGGLNGGEKMHPDFLQKNSFEIHD 187

Query: 188 VVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKRLRES-VPLFS 245
            +FDSLK NQG+LPYV ++ DI+    ++KGL  SQYCSFVPP + + KRL+ES +P   
Sbjct: 188 GIFDSLKDNQGILPYVHELSDISVYGNMLKGLDSSQYCSFVPPTLPKCKRLKESTIPFID 247

Query: 246 AYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFS 305
           +      + +SFDQ  ++ S+KIA+SFG+  PLDP      P S   +  SH+LSNGN S
Sbjct: 248 SCDMKKYDLYSFDQIRDNNSNKIAQSFGMQAPLDP-----GPSSHSSMCYSHSLSNGNSS 302

Query: 306 ASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRN 365
            SKP   AVKLELPSLQY E DLGSWG+S P  LLE+VD F+QSP P  TL+S C SP+N
Sbjct: 303 TSKP-YEAVKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTPISTLESDCSSPQN 361

Query: 366 SGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDYSDPLSPLG 421
           SGLLDAL++++ T+   KNH SDKSSNSS+ TP D ADS   N  ETEWEDY+DP+SP G
Sbjct: 362 SGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFG 421

Query: 422 HSATSLFNECTPLSASGSSLDEQAPVETF 450
             ATS+ NECT L A+ +SL+EQ PV+T 
Sbjct: 422 --ATSILNECTGLRANMNSLNEQLPVQTI 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334854611|gb|AEH05966.1| GAMYB2 protein [Glycine max]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/449 (63%), Positives = 341/449 (75%), Gaps = 16/449 (3%)

Query: 9   DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNS 68
           +D +L ND + + L DE   G A G++LKKGPWTS ED IL+DYVKKHGEGNWNAVQK++
Sbjct: 6   EDEVLPNDMSGTQLNDESYEGGA-GIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHT 64

Query: 69  GLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEI 128
           GL RCGKSCRLRWANHLRPNLKKGAFT EEE++I ELHAKMGNKWARMAAHLPGRTDNEI
Sbjct: 65  GLLRCGKSCRLRWANHLRPNLKKGAFTAEEERVIAELHAKMGNKWARMAAHLPGRTDNEI 124

Query: 129 KNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLLQANGYEIPD 187
           KNYWNTRIKR QRAGLPLYPPEVS QALQESQ  Q+  G+N G+K H D LQ N +EI D
Sbjct: 125 KNYWNTRIKRCQRAGLPLYPPEVSLQALQESQHSQSSGGLNGGEKMHPDFLQKNSFEIHD 184

Query: 188 VVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKRLRES-VPLFS 245
            +FDSLK NQG+LPYV ++ DI+    ++KGL  SQYCSFVPP + + KRL+ES +P   
Sbjct: 185 GIFDSLKDNQGILPYVHELSDISVYGNMLKGLDSSQYCSFVPPTLPKCKRLKESTIPFID 244

Query: 246 AYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFS 305
           +      + +SFDQ  ++ S+KIA+SFG+  PLDP      P S   +  SH+LSNGN S
Sbjct: 245 SCDMKKYDLYSFDQIRDNNSNKIAQSFGMQAPLDP-----GPSSHSSMCYSHSLSNGNSS 299

Query: 306 ASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRN 365
            SKP   AVKLELPSLQY E DLGSWG+S P  LLE+VD F+QSP P  TL+S C SP+N
Sbjct: 300 TSKP-YEAVKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTPISTLESDCSSPQN 358

Query: 366 SGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDYSDPLSPLG 421
           SGLLDAL++++ T+   KNH SDKSSNSS+ TP D ADS   N  ETEWEDY+DP+SP G
Sbjct: 359 SGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFG 418

Query: 422 HSATSLFNECTPLSASGSSLDEQAPVETF 450
             ATS+ NECT L A+ +SL+EQ PV+T 
Sbjct: 419 --ATSILNECTGLRANMNSLNEQLPVQTI 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334854609|gb|AEH05965.1| GAMYB1 protein [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/453 (62%), Positives = 337/453 (74%), Gaps = 16/453 (3%)

Query: 9   DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNS 68
           +D +L ND + + L DE   G A G++LKKGPWTS ED IL+DYVKKHGEGNWNAVQK++
Sbjct: 9   EDEVLPNDMSGTQLNDENYEGGA-GIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHT 67

Query: 69  GLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEI 128
           GL RCGKSCRLRWANHLRPNLKKGAF  EEE++  ELHAKMGNKWARMAAHLPGRTDNEI
Sbjct: 68  GLLRCGKSCRLRWANHLRPNLKKGAFAAEEERLTAELHAKMGNKWARMAAHLPGRTDNEI 127

Query: 129 KNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLLQANGYEIPD 187
           KNYWNTRIKRRQRAGLPLYPPEVS QALQESQ  Q+  G+N GDK H D LQ N YEI D
Sbjct: 128 KNYWNTRIKRRQRAGLPLYPPEVSLQALQESQHSQSTGGLNGGDKMHPDFLQKNSYEIHD 187

Query: 188 VVFDSLKANQGVLPYVPDIPDITASTMLMKGL-GSQYCSFVPPVMHRPKRLRES-VPLFS 245
            +FDSLK NQG+LPYV ++ DI+     +KGL  SQYCSFVPP   + KRL+ES +P   
Sbjct: 188 AIFDSLKDNQGILPYVHELSDISVYGNKLKGLDSSQYCSFVPPTSPKRKRLKESTIPFID 247

Query: 246 AYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFS 305
           +     K+ + FDQ  ++ SDKIA+SFG+  PLDP  +  +   +     SH+LSNGN S
Sbjct: 248 SCAMKKKDLYPFDQIQDNNSDKIAQSFGMQAPLDPGLSSHSSMCY-----SHSLSNGNSS 302

Query: 306 ASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCPSPRN 365
            SKP   A+KLELPSLQY E DLGSWG+S P  LLE+VD F+QSP    TL+S C SP+N
Sbjct: 303 TSKP-YEAMKLELPSLQYPELDLGSWGSSPPPSLLESVDDFLQSPTAISTLESDCSSPQN 361

Query: 366 SGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDYSDPLSPLG 421
           SGLLDAL++++ T+   KNH SDKSSNSS+ TP D ADS   N  ETEWEDY+DP+SP G
Sbjct: 362 SGLLDALLYQAKTMSSSKNHCSDKSSNSSTATPGDRADSSILNVYETEWEDYADPVSPFG 421

Query: 422 HSATSLFNECTPLSASGSSLDEQAPVETFGKHL 454
             ATS+ NEC  L A+ +SL+ Q PV+T   +L
Sbjct: 422 --ATSILNECPALRANANSLNGQLPVQTLTGNL 452

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446327|ref|XP_004140923.1| PREDICTED: transcription factor GAMYB-like [Cucumis sativus] gi|449520631|ref|XP_004167337.1| PREDICTED: transcription factor GAMYB-like [Cucumis sativus]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/457 (60%), Positives = 331/457 (72%), Gaps = 16/457 (3%)

Query: 6   NGSDDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQ 65
           N  +D + S DQT SPL+DE  GG A G+ILKKGPWTSAED ILI+YVKKHGEGNWNAVQ
Sbjct: 6   NEIEDNLPSQDQTLSPLLDEDSGGNASGIILKKGPWTSAEDEILIEYVKKHGEGNWNAVQ 65

Query: 66  KNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTD 125
           K+SGL RCGKSCRLRWANHLRPNLKKGAFT EEE +I+ELHAKMGNKWARMA HLPGRTD
Sbjct: 66  KHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEHLIIELHAKMGNKWARMAGHLPGRTD 125

Query: 126 NEIKNYWNTRIKRRQRAGLPLYPPEV---SFQALQESQCQNINGINSGDKGHHDLLQANG 182
           NEIKNYWNTRIKRRQRAGLPLYPPEV   ++QALQ  Q Q+  G    D  HHDLL++N 
Sbjct: 126 NEIKNYWNTRIKRRQRAGLPLYPPEVCLRTWQALQ--QTQDSGGSTVVDTDHHDLLRSNS 183

Query: 183 YEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLG-SQYCSFVPPVMHRPKRLRESV 241
           Y+IPDV F SLK  Q  L Y+P++PDI +S ML +GL  SQYC+ V P  HR KR R+S 
Sbjct: 184 YDIPDVTFHSLKP-QSALSYMPELPDI-SSCMLKRGLDTSQYCNLVQPTFHRQKRFRDSA 241

Query: 242 PLFSAYGGSVKNEFSFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSN 301
            LF    GSVK  F   QF +++  + A+SFG  F  + + T K   SFG  +GSH+L+N
Sbjct: 242 SLFPGPDGSVKTPFH--QFEDNSYSQAAQSFGTPFAHESNPTTKNAMSFGSFEGSHSLTN 299

Query: 302 GNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLDSGCP 361
           GN SAS+ +    KLELPSLQY ETDL SW T+    + E+VD FIQS  PT  L     
Sbjct: 300 GNSSASQHSKETEKLELPSLQYPETDLTSWDTTIQPAMFESVDPFIQS-TPTFVLAPDRT 358

Query: 362 SPRNSGLLDALIHESNTL--KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDYSDPLS 418
           SP +SGLL++L++ S T+  KNH SDK+SNS SVTP DV DS      +TE +DY++ +S
Sbjct: 359 SPCHSGLLESLVY-SKTMGPKNHPSDKNSNSCSVTPGDVTDSYNMAASKTEIDDYTEVIS 417

Query: 419 PLGHSATSLFNECTPLSASGSSLDEQAPVETF-GKHL 454
           P GHS +SLF+ECTP+SA+GSS ++    E F G H+
Sbjct: 418 PFGHSTSSLFSECTPISATGSSYEDPTLTEAFSGSHV 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510373|ref|XP_003523913.1| PREDICTED: transcription factor GAMYB-like [Glycine max]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/457 (59%), Positives = 322/457 (70%), Gaps = 18/457 (3%)

Query: 1   MSCSSNGSDDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGN 60
           MS  +N  +  +  NDQT S L DEG G    G++LKKGPWT+AED +L++YV+KHGEGN
Sbjct: 1   MSQMTNEINYNVHCNDQTGSQLNDEGNG---VGMVLKKGPWTAAEDVLLVNYVQKHGEGN 57

Query: 61  WNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHL 120
           WNAVQK SGL RCGKSCRLRWANHLRPNLKKGAFT EEE+MI ELHAKMGNKWARMAAHL
Sbjct: 58  WNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERMIAELHAKMGNKWARMAAHL 117

Query: 121 PGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQ-CQNINGINSGDKGHHDLLQ 179
            GRTDNEIKNYWNTR+KRRQRAGLPLYPPEV  QA QE +  Q    I++GD GHHD L+
Sbjct: 118 HGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVLLQAFQERKHGQGTGEISNGDGGHHDFLK 177

Query: 180 ANGYEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGS-QYCSFVPPVMHRPKRLR 238
            N YEI D +FDSLK NQG+LP++PD+P I+A++ L   LGS  YC+F+P  +      +
Sbjct: 178 KNNYEIHDAIFDSLKENQGILPFLPDLPAISANSFLPNCLGSPPYCNFLPSTLPNHDHFQ 237

Query: 239 ESVPLFSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFGMLQGSH 297
           ES   F        NEF  FD+  ++ SDKI+ SFGL  PLD     +   S G +  SH
Sbjct: 238 ESTMSFIGSSELNSNEFYPFDRIKDNNSDKISESFGLYSPLD-----RGASSHGSICYSH 292

Query: 298 TLSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFIQSPPPTGTLD 357
           +LSNGN S SK    A K ELPSLQ  ET+ G WGTS P PL E++D FI SP P   LD
Sbjct: 293 SLSNGNSSTSKLISEAAKSELPSLQIPETEFGCWGTSPPPPLNESLDVFIHSPQPPNALD 352

Query: 358 SGCPSPRNSGLLDALIHESNTL---KNHSSDKSSNSSSVTP-DVADSCTRNFCETEWEDY 413
           SG  SP NSGLLDAL++++NTL   KN+SSDKS NSS  TP D A+S   N  ETEWEDY
Sbjct: 353 SGS-SPLNSGLLDALLYQANTLGCSKNNSSDKSLNSSIATPGDRAESSALNMYETEWEDY 411

Query: 414 SDPLSPLGHSATSLFNECTPLSASGSSLDEQAPVETF 450
           +DPLSP G  ATS+ NE   +S +G+S D+    +TF
Sbjct: 412 ADPLSPFG--ATSILNEHPVVSTNGNSWDDWELFQTF 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
TAIR|locus:2080697	553	MYB65 "myb domain protein 65"	0.831	0.712	0.508	2.6e-95
TAIR|locus:2152830	520	MYB33 "myb domain protein 33"	0.879	0.801	0.494	1.1e-92
TAIR|locus:2059329	427	MYB81 "myb domain protein 81"	0.664	0.737	0.437	5.4e-63
TAIR|locus:2060241	490	MYB101 "myb domain protein 101	0.282	0.273	0.753	2.3e-62
TAIR|locus:2151938	523	MYB120 "myb domain protein 120	0.251	0.227	0.789	7.3e-58
TAIR|locus:2116447	389	MYB97 "myb domain protein 97"	0.265	0.323	0.728	3.1e-51
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.219	0.347	0.605	3.6e-40
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.291	0.425	0.538	1.6e-38
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.229	0.311	0.627	2.1e-38
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.236	0.348	0.6	2.6e-38

TAIR|locus:2080697 MYB65 "myb domain protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 209/411 (50%), Positives = 258/411 (62%)

Query:     8 SDDMMLSNDQTDSPLMDE-GGGGTARGV--ILKKGPWTSAEDAILIDYVKKHGEGNWNAV 64
             SDD M S+   +SP  D    G  +RG   +LKKGPWTS ED ILIDYVKKHGEGNWNAV
Sbjct:    10 SDDGMHSSIHNESPAPDSISNGCRSRGKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAV 69

Query:    65 QKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRT 124
             QK++ L RCGKSCRLRWANHLRPNLKKGAF+QEEEQ+IVE+HAKMGNKWA+MA HLPGRT
Sbjct:    70 QKHTSLARCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVEMHAKMGNKWAQMAEHLPGRT 129

Query:   125 DNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKG--HHDLLQANG 182
             DNEIKNYWNTRIKRRQRAGLPLYPPE+    L  S+    + I   D+   H D LQ  G
Sbjct:   130 DNEIKNYWNTRIKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNIIRVDRRRRHQDFLQL-G 188

Query:   183 YEIPDVVFDSLKANQGVLPYVPDIPDITASTMLMKGLGS-QYCSFVPPVMHRPKRLRESV 241
                 +V+FD L     +LP   D+ D+ A  ML  G  S +Y S++PP++  PK++ ES 
Sbjct:   189 NSKDNVLFDDLNFAASLLPAASDLSDLVACNMLGTGASSSRYESYMPPILPSPKQIWESG 248

Query:   242 PLFSAYGGSVKNEF-SFDQFHNDTSDKIARSFGLSFPLDPDTTPKAPESFG---MLQGSH 297
               F     ++K+EF S + F N    K  RS  +S P D D  P   +      M+  SH
Sbjct:   249 SRFPMCSSNIKHEFQSPEHFQNTAVQKNPRSCSIS-PCDVDHHPYENQHSSHMMMVPDSH 307

Query:   298 TLSNGNFSASKPNLGAVKLELPSLQYTETD-LGSWGTSSPQP---LLETVDAFIQSPPPT 353
             T++ G    SKP  GAVKLELPS QY+ET     W T+   P   LL++VDA+IQSPPP+
Sbjct:   308 TVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSVDAYIQSPPPS 367

Query:   354 GTLDSGCPSPRNSGLLDALIHESNTLKNHXXXXXXXXXXVTPDVADSCTRN 404
                +S C S  ++GLLD L+HE+  +K                 + +CT N
Sbjct:   368 QVEESDCFSSCDTGLLDMLLHEAK-IKTSAKHSLLMSSPQKSFSSTTCTTN 417

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2152830 MYB33 "myb domain protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 213/431 (49%), Positives = 266/431 (61%)

Query:    15 NDQTDSPLMDEGGGGT-AR--GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF 71
             +D  +SP  D+ G    +R  G  LKKGPW+SAED ILIDYV KHGEGNWNAVQK++ LF
Sbjct:     8 SDHNESPAADDNGSDCRSRWDGHALKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLF 67

Query:    72 RCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNY 131
             RCGKSCRLRWANHLRPNLKKGAF+QEEEQ+IVELHAKMGN+WARMAAHLPGRTDNEIKNY
Sbjct:    68 RCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNY 127

Query:   132 WNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGINSGDKGHHDLLQANGYEIPDVVFD 191
             WNTRIKRRQRAGLPLYPPE+  +AL+ SQ    + +   D+ H D LQ    E  +V FD
Sbjct:   128 WNTRIKRRQRAGLPLYPPEMHVEALEWSQEYAKSRVMGEDRRHQDFLQLGSCE-SNVFFD 186

Query:   192 SLKANQGVLPYVPDIPDITASTMLMKGLGS-QYCSFVPPVMHRPKRLRESVPLFSAYGGS 250
             +L     ++P   D+ D+TA   +     S +Y +F+ P +   KRL ES  L+     +
Sbjct:   187 TLNFTD-MVPGTFDLADMTAYKNMGNCASSPRYENFMTPTIPSSKRLWESELLYPGCSST 245

Query:   251 VKNEFSF-DQFHNDTSDKIARSFGLSFPLDPDTTPKAPE-SFGMLQGSHTLSNGNFSASK 308
             +K EFS  +QF N +   I+++   S P D +        S  M+  SHT ++G    SK
Sbjct:   246 IKQEFSSPEQFRNTSPQTISKTCSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGIVPYSK 305

Query:   309 PNLGAVKLELPSLQYTETDLGSWGTSSPQP---LLETVDAFIQSPPP-TGTLDSGCPSPR 364
             P  GAVKLELPS QY+ET    W  SS  P   LL+  D +IQSPPP TG  +S   S  
Sbjct:   306 PLYGAVKLELPSFQYSETTFDQWKKSSSPPHSDLLDPFDTYIQSPPPPTGGEESDLYSNF 365

Query:   365 NSGLLDALIHESNTLKNHXXXXXXXXXXVTPDVADSCTRNFCETEWEDYSDPL-SPLGHS 423
             ++GLLD L+ E+    N            T   AD       +T+ E++ + L S L HS
Sbjct:   366 DTGLLDMLLLEAKIRNNSTKNNLYRSCASTIPSADLGQVTVSQTKSEEFDNSLKSFLVHS 425

Query:   424 ATSLFN-ECTP 433
               S  N + TP
Sbjct:   426 EMSTQNADETP 436

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2059329 MYB81 "myb domain protein 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 155/354 (43%), Positives = 200/354 (56%)

Query:    38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
             KGPWT AED +LI YV KHG+GNWNAVQ NSGL RCGKSCRLRW NHLRP+LKKGAFT++
Sbjct:    22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQNNSGLSRCGKSCRLRWVNHLRPDLKKGAFTEK 81

Query:    98 EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQ 157
             EE+ ++ELHA +GNKWARMA  LPGRTDNEIKN+WNTR+KR QR GLP+YP EV   A+ 
Sbjct:    82 EEKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRLKRLQRLGLPVYPDEVREHAMN 141

Query:   158 ESQCQNINGINSGDKGHH--DLLQANGYEIPDVVFDSLKAN------QGVLPYVPDIPDI 209
              +    +N  +S D GHH  + ++A+  EIP+V F+ L  N      Q +L +VP     
Sbjct:   142 AATHSGLN-TDSLD-GHHSQEYMEADTVEIPEVDFEHLPLNRSSSYYQSMLRHVPPTNVF 199

Query:   210 TASTMLMKGLGSQYCSFVP-PVMHRPKRLRESVPLFSAYGGSVKNEFSFDQFHNDTSDKI 268
                        + Y    P P M   KR RE    F   GG   NE S            
Sbjct:   200 VRQKPCFFQPPNVYNLIPPSPYMSTGKRPREPETAFPCPGGYTMNEQS------------ 247

Query:   269 ARSFGLSFPLDPDTTPKAPESFGMLQGSHTLSNGNFSASKPNL--GAVKLELPSLQYTET 326
              R +  ++P   + + + P+S       H L N  +S+    L  G    E PS QY E 
Sbjct:   248 PRLW--NYPFVENVSEQLPDS-------HLLGNAAYSSPPGPLVHGVENFEFPSFQYHE- 297

Query:   327 DLGSWGTSSPQPLLE--TVDAFIQSPPPTGTLDSGCPSPR-NSGLLDALIHESN 377
             + G WG   P P+ E  + +  +QSP  T    S CPS     GLL+++++ S+
Sbjct:   298 EPGGWGADQPNPMPEHESDNTLVQSPL-TAQTPSDCPSSSLYDGLLESVVYGSS 350

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2060241 MYB101 "myb domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
 Identities = 104/138 (75%), Positives = 119/138 (86%)

Query:    23 MDEGGGGTARGVI----LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCR 78
             MD GG  TA   +    LKKGPWT+ EDAIL +YV+KHGEGNWNAVQKNSGL RCGKSCR
Sbjct:     1 MDGGGETTATATMEGRGLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCR 60

Query:    79 LRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138
             LRWANHLRPNLKKG+FT +EE++I++LHAK+GNKWARMA+ LPGRTDNEIKNYWNTR+KR
Sbjct:    61 LRWANHLRPNLKKGSFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKR 120

Query:   139 RQRAGLPLYPPEVSFQAL 156
             RQRAGLPLYP E+  Q +
Sbjct:   121 RQRAGLPLYPHEIQHQGI 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2151938 MYB120 "myb domain protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 7.3e-58, Sum P(3) = 7.3e-58
 Identities = 94/119 (78%), Positives = 110/119 (92%)

Query:    33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
             GVILKKGPWT+AED IL  YV+++GEGNWNAVQKN+GL RCGKSCRLRWANHLRPNLKKG
Sbjct:    23 GVILKKGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKG 82

Query:    93 AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEV 151
             +FT +EE++I++LHA++GNKWARMAA LPGRTDNEIKNYWNTR+KR  R GLPLYPP++
Sbjct:    83 SFTGDEERLIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRLLRQGLPLYPPDI 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

TAIR|locus:2116447 MYB97 "myb domain protein 97" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 94/129 (72%), Positives = 112/129 (86%)

Query:    24 DEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWAN 83
             ++G GG   GV+LKKGPWT AED  L  YV+++GEGNWN+VQK + L RCGKSCRLRWAN
Sbjct:    10 EDGEGG---GVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWAN 66

Query:    84 HLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAG 143
             HLRPNL+KG+FT EEE++I++LH+++GNKWARMAA LPGRTDNEIKNYWNTR+KR QR G
Sbjct:    67 HLRPNLRKGSFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRFQRQG 126

Query:   144 LPLYPPEVS 152
             LPLYPPE S
Sbjct:   127 LPLYPPEYS 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
 Identities = 63/104 (60%), Positives = 86/104 (82%)

Query:    36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
             LKKGPWT  ED +L+ ++KK+G G+W  + K +GL RCGKSCRLRW N+LRP++K+G FT
Sbjct:    12 LKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFT 71

Query:    96 QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
              +EE+++++LHA +GN+WA +AA LPGRTDNEIKN WNT +K+R
Sbjct:    72 ADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKR 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 77/143 (53%), Positives = 100/143 (69%)

Query:    36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
             LKKGPWT  ED  LIDY+  HG GNW  + KN+GL RCGKSCRLRW N+LRP++K+G F+
Sbjct:    13 LKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 72

Query:    96 QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ-RAGL-PL-YPPEVS 152
              EEE+ I++LH+ MGNKW+ +AA LPGRTDNEIKNYWNT I++R  + G+ P+ + P + 
Sbjct:    73 FEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHTPRLD 132

Query:   153 FQALQESQCQNINGINSGDKGHH 175
                +      +I   NS    HH
Sbjct:   133 LLDISSILSSSI--YNSSHHHHH 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 69/110 (62%), Positives = 91/110 (82%)

Query:    36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
             LKKGPWTS ED  L+DY++KHG GNW  + KN+GL RCGKSCRLRW N+LRP++K+G F+
Sbjct:    12 LKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71

Query:    96 QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ-RAGL 144
              EEE+ I++LH+ +GNKW+ +AA LPGRTDNEIKN+WNT I+++  R G+
Sbjct:    72 FEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGI 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 72/120 (60%), Positives = 91/120 (75%)

Query:    20 SPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL 79
             SP  DE G        LKKGPWT  ED  LI++++KHG G+W A+ K +GL RCGKSCRL
Sbjct:     4 SPCCDESG--------LKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRL 55

Query:    80 RWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
             RW N+LRP++K+G FT EEEQ I+ LH+ +GNKW+ +A HLPGRTDNEIKNYWNT I+++
Sbjct:    56 RWTNYLRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001720001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (551 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026418001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (750 aa)							•		0.483
	GSVIVG00021344001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (577 aa)							•		0.483
	AP2	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (511 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	474
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-41
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-40
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-15
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-12
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	9e-07
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-06

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  151 bits (383), Expect = 7e-41
 Identities = 63/108 (58%), Positives = 87/108 (80%), Gaps = 2/108 (1%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L+KG W+  ED  L+ ++ K+G G W++V K +GL RCGKSCRLRW N+LRP+LK+G F+
Sbjct: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR--RQR 141
           Q+EE +I+ELHA +GN+W+++AA LPGRTDNEIKN WN+ +K+  RQR
Sbjct: 72  QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  145 bits (366), Expect = 2e-40
 Identities = 58/104 (55%), Positives = 82/104 (78%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           +K+GPWT  ED IL+ ++KK GEG W ++ K +GL RCGKSCRLRW N+LRP++K+G  T
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
            +EE +I+ LH  +GN+W+ +A  +PGRTDNEIKNYWNT ++++
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 33  GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
               K G W   ED  L   VKK G  NW+ V         GK    RW NHL P LKK 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 93  AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
            +++EE++ +++L  ++G +W+ +A +   RT  +    +   ++  
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL 120

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 91  KGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNT 134
           +G +T EE+++++E   K GN  W+++A HLPGRTDN+ KN WN 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85
          +GPWT  ED +LI+ VKKHG GNW+ + K+    R    C+ RW N+L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 41  WTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQ 100
           WT  ED  L+  V+K+G  +W  + +  G  R   +CR RW   LRP   +G +T+EE+Q
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

Query: 101 MI 102
            +
Sbjct: 58  RL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 66.1 bits (162), Expect = 4e-14
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 91  KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKR 138
           KG +T+EE+++++EL  K G N W ++A  LPGRT  + +  W   +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87
          KG WT  ED +LI+ VKK+G+ NW  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 93  AFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNT 134
            +T+EE+++++E   K G N W ++A  LPGRT  + +  W  
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 59.1 bits (144), Expect = 9e-12
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85
          PWT  ED +L++ VKK+G+ NW  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRWAN 83
           WT  ED  L++ V+K+G GNW  + K+      R     + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 94  FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +T+EE++ +++L  K GN W ++A  L GRT +  ++ W  +++ +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPK 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	474
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.7
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.62
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.57
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.52
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.46
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.34
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
PLN03212	249	Transcription repressor MYB5; Provisional	99.31
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
PLN03091	459	hypothetical protein; Provisional	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.09
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.0
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.0
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.96
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.86
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.38
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.84
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.78
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.48
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.47
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.28
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.19
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.11
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.1
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.9
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.63
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.54
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.5
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.49
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.38
PRK13923	170	putative spore coat protein regulator protein YlbO	96.27
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.19
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.08
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.52
PRK13923	170	putative spore coat protein regulator protein YlbO	95.06
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.95
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.34
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.22
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.45
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.05
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.93
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.07
KOG1194	534	consensus Predicted DNA-binding protein, contains	91.93
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.75
KOG4282	345	consensus Transcription factor GT-2 and related pr	89.39
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	84.67

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=5.1e-34  Score=278.85  Aligned_cols=111  Identities=53%  Similarity=0.936  Sum_probs=105.9

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 011938           34 VILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKW  113 (474)
Q Consensus        34 p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kW  113 (474)
                      +.+.||+||+|||++|+++|++||.++|..||+.+|.+|++++||.||.|||+|++++|.||+|||++|++||+++|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            44568999999999999999999999999999999967999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHhhhHHHcCC
Q 011938          114 ARMAAHLPGRTDNEIKNYWNTRIKRRQRAGL  144 (474)
Q Consensus       114 s~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~  144 (474)
                      ++||++|||||+++|||+|+..+|||.+...
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999977644

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=4.1e-32  Score=264.19  Aligned_cols=110  Identities=53%  Similarity=1.119  Sum_probs=105.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK  112 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k  112 (474)
                      ++.++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++.+||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            47899999999999999999999999899999999975699999999999999999999999999999999999999999


Q ss_pred             hHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938          113 WARMAAHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus       113 Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      |+.||+.|+|||+++|||||+.+++++.++
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r  129 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLR  129 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence            999999999999999999999999988654

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=6.4e-31  Score=272.11  Aligned_cols=111  Identities=55%  Similarity=1.058  Sum_probs=106.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN  111 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~  111 (474)
                      .+.+++||+||+|||++|+++|++||.++|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            35689999999999999999999999999999999998669999999999999999999999999999999999999999


Q ss_pred             ChHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938          112 KWARMAAHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus       112 kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      +|.+||++|+|||+++||+||+.++||+++.
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998764

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=6e-18  Score=180.95  Aligned_cols=128  Identities=20%  Similarity=0.365  Sum_probs=117.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccch---------------------------------
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCR---------------------------------   78 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR---------------------------------   78 (474)
                      -.|.++|-.|+.|||++|..+...++..+|.+||..+|++|+..||.                                 
T Consensus       247 l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~n  326 (939)
T KOG0049|consen  247 LNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSIN  326 (939)
T ss_pred             cCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhcc
Confidence            36899999999999999999999999999999999999889999997                                 


Q ss_pred             ---------------------hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC-hHHHhccCCCCCHHHHHHHHHHHh
Q 011938           79 ---------------------LRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        79 ---------------------~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k-Ws~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                                           .||...|+|.+++|.||.+||.+|+.+|.+||.+ |.+|-..+|||++.|||.||.+.|
T Consensus       327 ShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL  406 (939)
T KOG0049|consen  327 SHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVL  406 (939)
T ss_pred             CccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHH
Confidence                                 5777889999999999999999999999999976 999999999999999999999999


Q ss_pred             hhHHHcCCCCCCchhhhhhhhhh
Q 011938          137 KRRQRAGLPLYPPEVSFQALQES  159 (474)
Q Consensus       137 kkk~r~g~~~~p~e~~~~~~~~~  159 (474)
                      .++.|++.|...++..+..+.+.
T Consensus       407 ~~s~K~~rW~l~edeqL~~~V~~  429 (939)
T KOG0049|consen  407 NRSAKVERWTLVEDEQLLYAVKV  429 (939)
T ss_pred             HHhhccCceeecchHHHHHHHHH
Confidence            99999999998888777665543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.70  E-value=1.5e-17  Score=178.07  Aligned_cols=105  Identities=27%  Similarity=0.468  Sum_probs=95.8

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN-  111 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~-  111 (474)
                      .|.+++|+||.+||.+|+.+|.+||..+|.+|-..+++ |+..|||+||.|.|+...|++.|+-.||+.|+.+|.+||. 
T Consensus       355 dPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g  433 (939)
T KOG0049|consen  355 DPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKG  433 (939)
T ss_pred             CccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccc
Confidence            58999999999999999999999999999999999997 9999999999999999999999999999999999999994 


Q ss_pred             ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938          112 KWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus       112 kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +|.+||..||.||..|.+.|-..++.-
T Consensus       434 ~WakcA~~Lp~~t~~q~~rrR~R~~~~  460 (939)
T KOG0049|consen  434 NWAKCAMLLPKKTSRQLRRRRLRLIAA  460 (939)
T ss_pred             hHHHHHHHccccchhHHHHHHHHHHHH
Confidence            699999999999996655444444433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.62  E-value=5.5e-16  Score=120.47  Aligned_cols=60  Identities=45%  Similarity=0.968  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHH
Q 011938           41 WTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMI  102 (474)
Q Consensus        41 WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~L  102 (474)
                      ||+|||++|+++|.+||. +|..||+.|+. |+..+|+.||.++|++.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997 99999999975 9999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.57  E-value=3.5e-15  Score=159.49  Aligned_cols=109  Identities=29%  Similarity=0.518  Sum_probs=104.0

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN  111 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~  111 (474)
                      .+..++.|.|+..||+.|..+|+++|..+|..||..+.. |+++||+.||.++++|.+++..|+.|||+.|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            456788999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             ChHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938          112 KWARMAAHLPGRTDNEIKNYWNTRIKRRQR  141 (474)
Q Consensus       112 kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r  141 (474)
                      .|..||..+++|+..+|.+||...+.....
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999998887765

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=6.3e-15  Score=155.13  Aligned_cols=107  Identities=24%  Similarity=0.514  Sum_probs=101.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWA  114 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs  114 (474)
                      .++.|-|+..||++|..+|.+||...|.+|++.+.. ++++||+.||..+|+|.+++..|+.|||++|+.+...+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            467889999999999999999999999999999986 9999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCHHHHHHHHHHHhhhHHHcC
Q 011938          115 RMAAHLPGRTDNEIKNYWNTRIKRRQRAG  143 (474)
Q Consensus       115 ~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g  143 (474)
                      -||..| ||+.+||-.||++++.......
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            999988 9999999999999998776543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.46  E-value=1.3e-13  Score=148.98  Aligned_cols=109  Identities=24%  Similarity=0.458  Sum_probs=99.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCC--CCCCCCHHHHHHHHHHHH-------
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNL--KKGAFTQEEEQMIVELHA-------  107 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~l--kkg~WT~EED~~LieLv~-------  107 (474)
                      ++|.||+||++.|..+|.++|. .|.+|++.|+  |.+..||+||+++...+-  +++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999998 9999999998  999999999999999884  899999999999999995       


Q ss_pred             Hh-------------------CCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCC
Q 011938          108 KM-------------------GNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYP  148 (474)
Q Consensus       108 k~-------------------G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p  148 (474)
                      ++                   +-+|..|++.+..|+..|||.+|+.++.+....+.....
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~  519 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESK  519 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccc
Confidence            33                   125999999999999999999999999998777776665

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.34  E-value=5.7e-13  Score=99.75  Aligned_cols=48  Identities=44%  Similarity=0.776  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      |++||.|||++|+++|.+||.++|..||+.++++|++.||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999779999999994499999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=1.6e-12  Score=97.39  Aligned_cols=46  Identities=28%  Similarity=0.708  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-hHHHhccCC-CCCHHHHHHHHHHHh
Q 011938           91 KGAFTQEEEQMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNTRI  136 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~k-Ws~IAk~Lp-GRT~~QcKnRW~~~L  136 (474)
                      |++||+|||++|++++.+||.+ |..||..|+ |||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            6899999999999999999998 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.31  E-value=1.2e-12  Score=128.47  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=74.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccC-CCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcc
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHL-PGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQN  163 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~L-pGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~  163 (474)
                      ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|++.++++.+...++..+..+...-+..
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999 5799999998 6999999999999999999999887776666555444444444


Q ss_pred             cCCccCCCCCcchhhhhcCC
Q 011938          164 INGINSGDKGHHDLLQANGY  183 (474)
Q Consensus       164 ~~~~~~~~~~~~~l~~~n~~  183 (474)
                      +..+......+.+..-+|.+
T Consensus       100 Ws~IAk~LpGRTDnqIKNRW  119 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYW  119 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHH
Confidence            44444333444444444444

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=6.3e-12  Score=97.64  Aligned_cols=49  Identities=33%  Similarity=0.740  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938           94 FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        94 WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      ||+|||++|+++|.+||++|.+||+.|+.||..+|++||++.|+++.++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~   49 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISR   49 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccC
Confidence            9999999999999999999999999996699999999999977765444

...

>PLN03091 hypothetical protein; Provisional

Probab=99.20  E-value=7.6e-12  Score=131.02  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC-CCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcc
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHL-PGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQN  163 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~L-pGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~  163 (474)
                      +..+++++||+|||++|+++|++||. +|..||+.+ +||+++|||.||.++|++.++++.+...++..+..+...-+..
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            46789999999999999999999995 699999988 4999999999999999999998877766665555554444444


Q ss_pred             cCCcc
Q 011938          164 INGIN  168 (474)
Q Consensus       164 ~~~~~  168 (474)
                      +..|.
T Consensus        89 WskIA   93 (459)
T PLN03091         89 WSQIA   93 (459)
T ss_pred             hHHHH
Confidence            44443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=7.9e-11  Score=85.35  Aligned_cols=47  Identities=43%  Similarity=0.920  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           91 KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 899999999999999999999998765

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.09  E-value=5.1e-11  Score=117.05  Aligned_cols=81  Identities=19%  Similarity=0.198  Sum_probs=66.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC-hHHHhccCC-CCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhccc
Q 011938           87 PNLKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNI  164 (474)
Q Consensus        87 p~lkkg~WT~EED~~LieLv~k~G~k-Ws~IAk~Lp-GRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~~  164 (474)
                      +.+.||+||.|||++|+++|++||.. |..||+.++ +|++++||-||.++|++.+++|.....++.....++..-+.-+
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            34558999999999999999999965 999999999 9999999999999999999998877766666555555444434


Q ss_pred             CCc
Q 011938          165 NGI  167 (474)
Q Consensus       165 ~~~  167 (474)
                      ..+
T Consensus        85 s~I   87 (238)
T KOG0048|consen   85 SLI   87 (238)
T ss_pred             HHH
Confidence            333

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.00  E-value=6.2e-10  Score=79.55  Aligned_cols=44  Identities=34%  Similarity=0.807  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHh
Q 011938           93 AFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                      +||++||..|+.++.+|| .+|..||+.|++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.00  E-value=4.2e-10  Score=81.53  Aligned_cols=48  Identities=46%  Similarity=0.888  Sum_probs=44.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      +++||++||++|+.++.+||..+|..||+.+++ |++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence            468999999999999999995699999999996 999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.96  E-value=1e-09  Score=119.23  Aligned_cols=119  Identities=24%  Similarity=0.314  Sum_probs=96.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhC-----------------------CCChhHHhhhhCCccccccchhhhhhccCCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHG-----------------------EGNWNAVQKNSGLFRCGKSCRLRWANHLRPNL   89 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG-----------------------~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~l   89 (474)
                      ...++-+.|+++||++|...|..|-                       .+-|+.|.+.++. |+.+.++.+-++...+--
T Consensus       303 ~~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE  381 (607)
T KOG0051|consen  303 EDEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFE  381 (607)
T ss_pred             hhhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccc
Confidence            4567778999999999999998772                       0137888889998 999998774444444433


Q ss_pred             -CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHH--HcCCCCCCchhhh
Q 011938           90 -KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ--RAGLPLYPPEVSF  153 (474)
Q Consensus        90 -kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~--r~g~~~~p~e~~~  153 (474)
                       ++|.||+||++.|..+|.++|+.|..|++.| ||.+..||.||+.+.+...  +++.+...++..+
T Consensus       382 ~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~L  447 (607)
T KOG0051|consen  382 NKRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKL  447 (607)
T ss_pred             cccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHH
Confidence             9999999999999999999999999999998 9999999999999999886  4455544444433

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.86  E-value=2.4e-09  Score=76.43  Aligned_cols=45  Identities=47%  Similarity=0.886  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938           40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      +||.+||++|+.++.+||..+|..||+.+++ |++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999996699999999997 99999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.38  E-value=4.7e-08  Score=105.37  Aligned_cols=101  Identities=26%  Similarity=0.561  Sum_probs=89.3

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC-
Q 011938           34 VILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP--NLKKGAFTQEEEQMIVELHAKMG-  110 (474)
Q Consensus        34 p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p--~lkkg~WT~EED~~LieLv~k~G-  110 (474)
                      +.-.+|.||++|+..|...|.++|. .|..|.+.++  |-...||+||++|...  .+++++|+.||+.+|...+...- 
T Consensus       287 ~f~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~  363 (512)
T COG5147         287 IFEQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRL  363 (512)
T ss_pred             HHhhhccCccccccccccccccccc-hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHH
Confidence            4456899999999999999999998 9999999886  9999999999999998  67888999999999999887543 


Q ss_pred             -------CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938          111 -------NKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus       111 -------~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                             -.|..|++.++.|...+|+.++..+..
T Consensus       364 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         364 EAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             HHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                   249999999999999999988877654

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.84  E-value=1.9e-05  Score=83.24  Aligned_cols=127  Identities=19%  Similarity=0.390  Sum_probs=87.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC-CCCCC
Q 011938           13 LSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR-PNLKK   91 (474)
Q Consensus        13 ~~~~~~~s~~~~~~~~~~~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~-p~lkk   91 (474)
                      .++...++.+++...      -.+-..-||.+|+-+|++++..||.|||..||.++|. |++.+|+++|.+++- ..+-.
T Consensus        53 ~H~~~H~Yrim~~~s------~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~fv~s~~~~  125 (438)
T KOG0457|consen   53 KHQNDHPYRIMDTNS------FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHFVNSPIFP  125 (438)
T ss_pred             CCCCCCCceeecCCC------CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHHhcCcccc
Confidence            355566666666443      3556778999999999999999999999999999997 999999999998653 22222


Q ss_pred             CCCC-------HHHHHHHHHH-HHHhCC-------------ChHHHhccCCCCCH-------------------------
Q 011938           92 GAFT-------QEEEQMIVEL-HAKMGN-------------KWARMAAHLPGRTD-------------------------  125 (474)
Q Consensus        92 g~WT-------~EED~~LieL-v~k~G~-------------kWs~IAk~LpGRT~-------------------------  125 (474)
                      -+|.       ..||.....- +..++.             .=.+|+.+||+|.+                         
T Consensus       126 ~~~i~~~~~~~q~e~~~~~k~~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~dFd~Eydn~AE~li~dm~f~e~D~~~  205 (438)
T KOG0457|consen  126 LPDISLGIGVNQDEDAAMAKNRAEPFQPTDLVPRKPGVSNPLRREISGYMPGRLDFDEEYDNEAEQLIRDMEFEEDDTEE  205 (438)
T ss_pred             ccccccccCcchHHHhhhcccccccCCCCCCCCCCCCCCCchHHHHhhhCccchhhhhhhcchhhhhHhhcccCCCCcHH
Confidence            2332       3344444333 222222             24588999999843                         


Q ss_pred             -----HHHHHHHHHHhhhHHHcCCCC
Q 011938          126 -----NEIKNYWNTRIKRRQRAGLPL  146 (474)
Q Consensus       126 -----~QcKnRW~~~Lkkk~r~g~~~  146 (474)
                           .++.+-|+.+|+.|.++...+
T Consensus       206 d~elKla~ldiY~srl~eR~RRK~~I  231 (438)
T KOG0457|consen  206 DHELKLAVLDIYNSRLKERKRRKRFI  231 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 255677888888776655443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.78  E-value=2.8e-05  Score=61.09  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCh---hHHhhhhCCcc-ccccchhhhhhcc
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNW---NAVQKNSGLFR-CGKSCRLRWANHL   85 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW---~~IAk~l~~~R-t~kQCR~RW~n~L   85 (474)
                      ++-.||+||..+++++|+.+|.++|   +.|++.|+..| +..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999999   99999998656 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=8.8e-05  Score=79.70  Aligned_cols=69  Identities=19%  Similarity=0.355  Sum_probs=61.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQ  157 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~  157 (474)
                      ++.|-|+.-||+.|..+|.+||. +|++|+..++-.|..||++||...+.+.+++..+....+..+.-+-
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhla   74 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLA   74 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHH
Confidence            57789999999999999999995 5999999999999999999999999999999888877766654433

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.47  E-value=0.00024  Score=55.81  Aligned_cols=48  Identities=13%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-Ch---HHHhccCC-CC-CHHHHHHHHHHHhh
Q 011938           90 KKGAFTQEEEQMIVELHAKMGN-KW---ARMAAHLP-GR-TDNEIKNYWNTRIK  137 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~-kW---s~IAk~Lp-GR-T~~QcKnRW~~~Lk  137 (474)
                      .+-.||+||..++++++..+|. +|   ..|++.|. .| |..||+.+.+.+.-
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            3567999999999999999997 89   99999884 45 99999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.28  E-value=0.0011  Score=64.41  Aligned_cols=98  Identities=20%  Similarity=0.412  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhHHhhhhCCc--cccccchhhhhhcc-CCCC--------------------CCCCCCH
Q 011938           40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRWANHL-RPNL--------------------KKGAFTQ   96 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~--Rt~kQCR~RW~n~L-~p~l--------------------kkg~WT~   96 (474)
                      +|++++|-+|+.+|..-.  +-..|++-+...  -|-+.+..||+..| +|.+                    .+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999854  777887765542  35667788999765 3322                    4568999


Q ss_pred             HHHHHHHHHHHHhCC---ChHHHh----ccC-CCCCHHHHHHHHHHHhhhH
Q 011938           97 EEEQMIVELHAKMGN---KWARMA----AHL-PGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        97 EED~~LieLv~k~G~---kWs~IA----k~L-pGRT~~QcKnRW~~~Lkkk  139 (474)
                      +||++|.........   .+.+|=    ..| ++||+.++.++|+.+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            999999997765543   366663    223 7899999999999765544

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.19  E-value=0.00047  Score=73.01  Aligned_cols=50  Identities=22%  Similarity=0.447  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           88 NLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        88 ~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      .+-...||.+||.+|++++..|| ++|..||.++..|+..+||.+|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34556899999999999999999 789999999999999999999977654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.11  E-value=0.00056  Score=55.18  Aligned_cols=52  Identities=19%  Similarity=0.442  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CC-hHHHhccCC-CCCHHHHHHHHHHHhhhHHHc
Q 011938           91 KGAFTQEEEQMIVELHAKMG--------NK-WARMAAHLP-GRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G--------~k-Ws~IAk~Lp-GRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      |-+||.|||++|++.|+++.        ++ |.++++.-+ .+|-...|+||...|+.+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~~   63 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPRK   63 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT------
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccccC
Confidence            45899999999999997652        23 999998887 999999999999888876543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.10  E-value=0.00048  Score=64.53  Aligned_cols=49  Identities=20%  Similarity=0.405  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-------ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGN-------KWARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~-------kWs~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      +...||.|||.+|.+.|.+|=+       -+.++++.| +||+..|.-|||..+|++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHH
Confidence            5678999999999999999842       289999999 999999999999999855

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.00057  Score=56.46  Aligned_cols=50  Identities=26%  Similarity=0.559  Sum_probs=35.1

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------ChHHHhccC----CCCCHHHHHHHHHHHhhhHH
Q 011938           91 KGAFTQEEEQMIVELHAK------MG--N------KWARMAAHL----PGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k------~G--~------kWs~IAk~L----pGRT~~QcKnRW~~~Lkkk~  140 (474)
                      |..||.+|...||+++..      ++  .      -|..||..|    ..||..||++||+++.++-.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            357999999999999887      22  1      299999888    36999999999999655443

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.90  E-value=0.00064  Score=72.56  Aligned_cols=46  Identities=20%  Similarity=0.582  Sum_probs=43.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~   84 (474)
                      ....||.+|..+|++.|+.||. +|.+||+++|+ |+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            5669999999999999999999 99999999997 9999999999863

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.63  E-value=0.0015  Score=71.25  Aligned_cols=48  Identities=23%  Similarity=0.577  Sum_probs=43.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~   84 (474)
                      ..-++.||.+|+.+|++.|.+||. +|.+||.+++. |+..||..|+.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCC-CCHHHHHHHHHhc
Confidence            344678999999999999999999 99999999997 9999999999863

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.54  E-value=0.0017  Score=52.47  Aligned_cols=52  Identities=33%  Similarity=0.574  Sum_probs=33.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--ChhHHhhhhCCccccccchhhhhhccCCCC
Q 011938           38 KGPWTSAEDAILIDYVKKHGE------G--NWNAVQKNSGLFRCGKSCRLRWANHLRPNL   89 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~------~--nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~l   89 (474)
                      +.+||.|||++|+++|..+..      |  =|.++++.-++.++..+-|+||.++|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999976631      2  399999988866999999999999997643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.50  E-value=0.0013  Score=61.59  Aligned_cols=50  Identities=28%  Similarity=0.623  Sum_probs=43.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-C-----ChhHHhhhhCCccccccchhhhhhccCC
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGE-G-----NWNAVQKNSGLFRCGKSCRLRWANHLRP   87 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~-~-----nW~~IAk~l~~~Rt~kQCR~RW~n~L~p   87 (474)
                      .++-.||.|||.+|-+.|.+|-. |     .+.+|++.++  ||+..|..||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            35668999999999999999932 1     5899999997  9999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.49  E-value=0.0033  Score=68.58  Aligned_cols=45  Identities=16%  Similarity=0.389  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNT  134 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~  134 (474)
                      .++.||++|..+|++.+..||.+|.+||.++.+||..||--++..
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            456899999999999999999999999999999999999998865

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.38  E-value=0.0033  Score=67.31  Aligned_cols=45  Identities=16%  Similarity=0.350  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNT  134 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~  134 (474)
                      ....||.+|..+|++.++.||..|.+||+++..||..||--||.+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            344899999999999999999999999999999999999999964

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.27  E-value=0.0039  Score=59.15  Aligned_cols=51  Identities=20%  Similarity=0.390  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC-------hHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGNK-------WARMAAHLPGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~k-------Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~  140 (474)
                      .+...||.|||.+|.+.|.+|+..       ...++..| +||..+|..|||..++++-
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            356789999999999999998753       67777888 9999999999999998664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.19  E-value=0.0084  Score=48.76  Aligned_cols=51  Identities=27%  Similarity=0.560  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----------------ChHHHhccC-----CCCCHHHHHHHHHHHhhhHHH
Q 011938           91 KGAFTQEEEQMIVELHAKMGN-----------------KWARMAAHL-----PGRTDNEIKNYWNTRIKRRQR  141 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~-----------------kWs~IAk~L-----pGRT~~QcKnRW~~~Lkkk~r  141 (474)
                      +..||.+|.+.|++++.+|..                 -|.+|+..|     +.||..+||.+|.++...-.+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            457999999999999988721                 299999777     359999999999997655443

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.08  E-value=0.004  Score=51.38  Aligned_cols=46  Identities=28%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--C---C--ChhHHhhhh---CCccccccchhhhhhc
Q 011938           39 GPWTSAEDAILIDYVKK--H----G--E---G--NWNAVQKNS---GLFRCGKSCRLRWANH   84 (474)
Q Consensus        39 g~WT~EED~~L~~lV~k--y----G--~---~--nW~~IAk~l---~~~Rt~kQCR~RW~n~   84 (474)
                      ..||.+|...|++++..  +    +  .   +  -|..||..|   |..|++.||+.||.+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999987  2    1  1   1  499999876   4569999999999874

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.52  E-value=0.0081  Score=61.81  Aligned_cols=51  Identities=20%  Similarity=0.470  Sum_probs=45.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      .+---.|+..|+.+|++.....|.|||..||..+|. |....|+.+|.+++.
T Consensus        60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~  110 (432)
T COG5114          60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD  110 (432)
T ss_pred             cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence            333457999999999999999999999999999996 999999999998765

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.06  E-value=0.01  Score=56.35  Aligned_cols=51  Identities=24%  Similarity=0.532  Sum_probs=42.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC------ChhHHhhhhCCccccccchhhhhhccCC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEG------NWNAVQKNSGLFRCGKSCRLRWANHLRP   87 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~------nW~~IAk~l~~~Rt~kQCR~RW~n~L~p   87 (474)
                      ..++..||.|||.+|-+.|.+|+..      -...++..+.  |+..+|..||+.+++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vrk   58 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVRK   58 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHHH
Confidence            3567899999999999999999642      3677778776  9999999999877764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.95  E-value=0.018  Score=46.88  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=39.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CChhHHhhhh----CCccccccchhhhhhcc
Q 011938           37 KKGPWTSAEDAILIDYVKKHGE----------------GNWNAVQKNS----GLFRCGKSCRLRWANHL   85 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~----------------~nW~~IAk~l----~~~Rt~kQCR~RW~n~L   85 (474)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    +..|+..||+.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999998831                1499999876    22599999999998854

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.34  E-value=0.039  Score=56.97  Aligned_cols=46  Identities=22%  Similarity=0.458  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           92 GAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      ..|+.+|+.+|++...-.| .+|..||.+++.|+..+||.+|.++..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4699999999999999999 689999999999999999999976554

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.22  E-value=0.16  Score=60.19  Aligned_cols=102  Identities=16%  Similarity=0.344  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchh-------hhhh---------c-------------------
Q 011938           40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL-------RWAN---------H-------------------   84 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~-------RW~n---------~-------------------   84 (474)
                      .|+..|=..++.+..+||..+...||..+.+ ++...++.       ||..         .                   
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999899999999975 77776652       2111         0                   


Q ss_pred             --------------cC-CCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhcc------------CCCCCHHHHHHHHHHHh
Q 011938           85 --------------LR-PNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAH------------LPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        85 --------------L~-p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~------------LpGRT~~QcKnRW~~~L  136 (474)
                                    +. +..++..||+|||+.|+-.+.+|| .+|.+|-..            +..||+.+|..|.+.++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          00 122445699999999999999999 569999432            25799999999999988


Q ss_pred             hhHHHc
Q 011938          137 KRRQRA  142 (474)
Q Consensus       137 kkk~r~  142 (474)
                      +--.|.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            865443

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.45  E-value=0.091  Score=55.53  Aligned_cols=58  Identities=16%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhcc-----CCC-CCHHHHHHHHHHHhhhHHHcCCCCCC
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAH-----LPG-RTDNEIKNYWNTRIKRRQRAGLPLYP  148 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~-----LpG-RT~~QcKnRW~~~Lkkk~r~g~~~~p  148 (474)
                      ...||.||-..|++|+++|.-+|-.||..     ++. ||-.++|.||....++..+...+..+
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~s  193 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNS  193 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCch
Confidence            35799999999999999999999999977     555 99999999999988888777666544

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.05  E-value=0.15  Score=52.72  Aligned_cols=52  Identities=17%  Similarity=0.352  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CChHHHhccC----CCCCHHHHHHHHHHHhhhHHHc
Q 011938           91 KGAFTQEEEQMIVELHAKMG----------NKWARMAAHL----PGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G----------~kWs~IAk~L----pGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      ...|+.+|-..||++..+.-          .-|..||+.+    .-||+.|||+||.++.++-.+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~  119 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE  119 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            36799999999999987542          2399999866    3499999999999987766543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.93  E-value=0.17  Score=45.37  Aligned_cols=66  Identities=27%  Similarity=0.390  Sum_probs=46.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN  111 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~  111 (474)
                      .-++..||.+||.-|+-++.+||-   +.|..|-..+-   ..-+                                |--
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir---~~p~--------------------------------FrF   90 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIR---ESPL--------------------------------FRF   90 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH---H-CG--------------------------------GCT
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH---hCCC--------------------------------ccc
Confidence            455778999999999999999998   89999987663   1111                                122


Q ss_pred             ChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938          112 KWARMAAHLPGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus       112 kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~  140 (474)
                      +|-     +..||+.+|..|.+.+++--.
T Consensus        91 Dwf-----~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   91 DWF-----FKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             -HH-----HHTS-HHHHHHHHHHHHHHHH
T ss_pred             chh-----cccCCHHHHHHHHHHHHHHHH
Confidence            231     568999999999999887543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.07  E-value=0.31  Score=40.67  Aligned_cols=45  Identities=29%  Similarity=0.582  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------ChHHHhccCC-----CCCHHHHHHHHHHHhh
Q 011938           93 AFTQEEEQMIVELHAKM---GN----------KWARMAAHLP-----GRTDNEIKNYWNTRIK  137 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~---G~----------kWs~IAk~Lp-----GRT~~QcKnRW~~~Lk  137 (474)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..+..||++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999998653   21          2999998872     3588999999988544

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=91.93  E-value=0.52  Score=50.88  Aligned_cols=51  Identities=18%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~  140 (474)
                      ....||.||-.++-+++..||..+.+|-+.||.|+-..|..+|....|.+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            456799999999999999999999999999999999999999987655543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.75  E-value=0.32  Score=51.39  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           92 GAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      .+|+.+|-+++.++..++|..++.|+..+|.|...|||.+|.+--|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            3699999999999999999999999999999999999999976444

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=89.39  E-value=0.73  Score=47.72  Aligned_cols=47  Identities=26%  Similarity=0.487  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHh----CCC-----ChhHHhhhh---CCccccccchhhhhhcc
Q 011938           39 GPWTSAEDAILIDYVKKH----GEG-----NWNAVQKNS---GLFRCGKSCRLRWANHL   85 (474)
Q Consensus        39 g~WT~EED~~L~~lV~ky----G~~-----nW~~IAk~l---~~~Rt~kQCR~RW~n~L   85 (474)
                      ..|+.+|-..|+++..+.    ..+     -|..||+.+   |..|++.||+.||.+..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            689999999999998643    122     599999854   44599999999998743

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=84.67  E-value=1.9  Score=32.33  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           96 QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        96 ~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +++++.++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4678888999999999999999999 99999999988776543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	474
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-27
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		9e-27
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-26
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-26
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-19
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		8e-12
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		1e-11
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		9e-08
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-07
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-07

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
           L KGPWT  ED  +I+ VKK+G   W  + K+  G  R GK CR RW NHL P +KK ++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 95  TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           T+EE+++I E H  +GN+WA +A  LPGRTDN +KN+WN+ IKR+
Sbjct: 63  TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  117 bits (294), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 35  ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGA 93
           +L KGPWT  ED  +I  V+K+G   W+ + K+  G  R GK CR RW NHL P +KK +
Sbjct: 1   MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 58
Query: 94  FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +T+EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
           L KGPWT  ED  +I++V+K+G   W+ + K+  G  R GK CR RW NHL P +KK ++
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 82
Query: 95  TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           T+EE+++I + H ++GN+WA +A  LPGRTDN +KN+WN+ ++R+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
           L KGPWT  ED  +I  V+K+G   W+ + K+  G  R GK CR RW NHL P +KK ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 95  TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           T+EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L KGPWT  ED  +I  V+K+G   W+ + K+    R GK CR RW NHL P +KK ++T
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLKKGAFTQ 96
           KGP+T AED ++ +YVK++G  NW  +   S L  R  K CR RW NHL P + K A+T 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRI--TSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 97  EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           EE++ I   + K+G+KW+ +A  +PGRTDN IKN WN+ I +R
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 42/51 (82%)
Query: 89  LKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +KK ++T+EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 37  KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRWANHLRPNLKKGAF 94
           KK  +T  ED +L   V +HG  +W  +   +  F  R  + CR RW N+L P++    +
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGS-DWKMI---AATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 95  TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNT 134
           T EE+ ++V+   + G +WA +A   PGRTD  IKN W T
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 42/51 (82%)
Query: 89  LKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +KK ++T+EE++++ + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
           K  +T  ED  L   V ++G  +W  + +   + R  + CR RW N++ P L+   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 98  EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
           E+ ++ + +A+ G KW +++  L  R+DN I+N W    + R +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
          L KGPWT  ED  LI  V+K+G   W+ + K+  G  R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
          L KGPWT  ED  +I+ V+K+G   W+ + K+  G  R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
          L KGPWT  ED  +I  V+K+G   W+ + K+  G  R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	474
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-69
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-68
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	7e-67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-59
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-36
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-08
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-28
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-08
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	5e-28
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	7e-06
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-21
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-17
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-14
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	8e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-10
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	8e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-08
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	3e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	8e-04
2cjj_A	93	Radialis; plant development, DNA-binding protein,	8e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  215 bits (551), Expect = 1e-69
 Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L KGPWT  ED  +I  V+K+G   W+ + K+    R GK CR RW NHL P +KK ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  213 bits (544), Expect = 3e-68
 Identities = 49/104 (47%), Positives = 75/104 (72%), Gaps = 1/104 (0%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L KGPWT  ED  +I++V+K+G   W+ + K+    R GK CR RW NHL P +KK ++T
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +EE+++I + H ++GN+WA +A  LPGRTDN +KN+WN+ ++R+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  209 bits (535), Expect = 7e-67
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
           KGP+T AED ++ +YVK++G  NW  +       R  K CR RW NHL P + K A+T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 98  EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
           E++ I   + K+G+KW+ +A  +PGRTDN IKN WN+ I +R  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  190 bits (486), Expect = 1e-59
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
            KK  +T  ED +L   V +HG  +W  +       R  + CR RW N+L P++    +T
Sbjct: 9   AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWT 66

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
            EE+ ++V+   + G +WA +A   PGRTD  IKN W T   +   
Sbjct: 67  AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  190 bits (484), Expect = 1e-59
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
           K  +T  ED  L   V ++G  +W  + +     R  + CR RW N++ P L+   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 98  EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
           E+ ++ + +A+ G KW +++  L  R+DN I+N W    + R +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  190 bits (486), Expect = 3e-59
 Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L KGPWT  ED  +I  V+K+G   W+ + K+    R GK CR RW NHL P +KK ++T
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114

Query: 96  QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
           +EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  131 bits (332), Expect = 1e-36
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           L K  WT  ED  L   V+++G  +W  +       R    C+ RW   L P L KG +T
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 96  QEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEI----KNYWNTRIKRR 139
           +EE+Q +++L  K G K W+ +A HL GR   +      N+ N  +K+ 
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 36  LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNL 89
           +KK  WT  ED I+    K+ G   W  + K   G  R   + +  W + +R  +
Sbjct: 108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPG--RTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 88  NLKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYW 132
           +L K  +T+EE++ + +L  + G   W  +A +LP RTD + ++ W
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 48

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  106 bits (266), Expect = 2e-28
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
           K G W + ED IL   V K+G+  W+ +       +  K C+ RW   L P++KK  ++
Sbjct: 7  GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWS 65

Query: 96 QEEE 99
              
Sbjct: 66 GPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 86  RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTD 125
             + K G +   E++++     K G N+W+R+A+ L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  104 bits (262), Expect = 5e-28
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87
          L KGPWT  ED  LI  V+K+G   W+ + K+    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 89  LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRT 124
           L KG +T+EE+Q +++L  K G  +W+ +A HL GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87
          L K  WT  ED  L   V+++G  +W  +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 89  LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWN 133
           L K  +T+EE++ + +L  + G + W  +A +LP RTD + ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 74.2 bits (183), Expect = 4e-17
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLK 90
            K  WT  ED  L   V++ G+ +W  +  +    R  + C+ RW   L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 86  RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTD 125
             +  K  +T EE++ +  L  + G   W  +A+H P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 65.0 bits (159), Expect = 6e-14
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLR 86
          K+  W   ED  L   V+K+GEGNW+ +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 90  KKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIKRR 139
           K+ A+  EE++ +     K G   W+++  H     RT   +K+ W T  K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 58.9 bits (142), Expect = 4e-11
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 37  KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF---RCGKSCRLRWANHLR-----PN 88
            + P++ AE   L+  V+K G G W  V+  +      R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 89  LKKGAFTQEEEQM-IVELHAKMGNKWAR 115
            ++G    +E    ++  H     +  +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQ 99

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLRPNL 89
          KK  WT  E   +   V+K+GEGNW A+ KN     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 90  KKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIK 137
           KK  +T EE + +     K G   WA ++ + P   RT   IK+ W T  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 56.7 bits (137), Expect = 8e-11
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLRPNLKK 91
          K+  W   ED  L   V+K+GEGNW+ +  +     R     + RW    +  L  
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 90  KKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIKRR 139
           K+ A+  EE++ +     K G   W+++  H     RT   +K+ W T  K +
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLRPNL 89
          KK  WT  E   +   V+K+GEGNW A+ KN     R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 82  ANHLRPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIK 137
            +      KK  +T EE + +     K G   WA ++ + P   RT   IK+ W T  +
Sbjct: 2   EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 56.7 bits (136), Expect = 3e-10
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 37  KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF---RCGKSCRLRWANHLR-----PN 88
            + P++ AE   L++ V+  G G W  V+  +      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 89  LKKGAFTQEEEQMIV-ELHAKMGNKWAR 115
            ++G    ++    V   HA    +  +
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 55.5 bits (133), Expect = 8e-10
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 37  KKGPWTSAEDAILIDYVKKHGEGNWNAVQK---NSGLFRCGKSCRLRWAN-----HLRPN 88
            + P+T AE  +L++ V+  G G W  V+     +   R     + +W        + P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 89  LKKGA-FTQEEEQMIVELHAKMGNKWARMAAHL 120
            ++GA   QE    ++   A      +     L
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSGRIVTL 122

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGA 93
           KK  W+  E+  L+   K      W  +    G  R    C   +   L    ++ +
Sbjct: 7  GKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 87  PNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
            + KK  +++EEE+ ++ L   M  +W R  A + GRT  +   ++   + +  +
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQW-RTIAPIIGRTAAQCLEHYEFLLDKAAQ 58

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 40  PWTSAEDAILIDYVKKHGEGNWNAVQKN---SGLFRCGKSCRLRWANHLR-----PNLKK 91
           P++ AE   L++ V+  G G W  V+     +   R     + +W   +      P  ++
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 92  GAFTQEEEQM-IVELHAKMGNK 112
           G    ++    ++  HA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 76/509 (14%), Positives = 146/509 (28%), Gaps = 168/509 (33%)

Query: 52  YVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN 111
           Y+++  +  +N  Q    +F      RL+    LR  L +        + ++ +   +G+
Sbjct: 112 YIEQR-DRLYNDNQ----VFAKYNVSRLQPYLKLRQALLE----LRPAKNVL-IDGVLGS 161

Query: 112 -KWARMAAH------LPGRTDNEIKNYWNTRIKRRQRAGLPL-------YPPEVSFQALQ 157
            K   +A        +  + D +I  +W   +K        L       Y  + ++ +  
Sbjct: 162 GKTW-VALDVCLSYKVQCKMDFKI--FWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 158 ESQCQNINGINSGDKGHHDLLQANGYE-----IPDV-----------------------V 189
           +        I+S       LL++  YE     + +V                       V
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 190 FDSLKANQGVLPYVPDIPD-ITAS---TMLMKGLGSQYCSFVPPVMHRPKRLRESV---- 241
            D L A       +      +T     ++L+K L             RP+ L   V    
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----------CRPQDLPREVLTTN 326

Query: 242 PL-FSAYGGSVKNEFS-FDQFHNDTSDKIARSFGLSF-PLDPDTTPKAPESFGMLQGSHT 298
           P   S    S+++  + +D + +   DK+      S   L+P    K  +   +   S  
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384

Query: 299 LSNGNFSASKPNLGAVKLELPSLQYTETDLGSWGTSSPQPLLETVDAFI-------QSPP 351
                            +    L         W       ++  V+          Q   
Sbjct: 385 ---------------AHIPTILLSLI------WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 352 PTGTLDSGCPSPRNSGLLDALIHESNTLKNHSS-------DKSSNSSSVTPDVADSCTRN 404
            T ++         S  L+  +   N    H S        K+ +S  + P   D     
Sbjct: 424 STISI--------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----- 470

Query: 405 FCETEWEDYSDPLSPLGH--------SATSLF---------------NECTPLSASGSSL 441
                   Y    S +GH           +LF               ++ T  +ASGS L
Sbjct: 471 -------QYF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 442 DEQAPVETFGKHLHLILIITLKGHSGTFE 470
           +    ++ +  +      I    +   +E
Sbjct: 522 NTLQQLKFYKPY------ICD--NDPKYE 542

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 78  RLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK 137
                +  R NL    +T+EE     +   + G  W+ +A  +  +T ++ KN++    K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 138 R 138
           R
Sbjct: 63  R 63

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85
              WT+ E+  L++ V   G GNW  V       +  + C   +  + 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 90  KKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNT 134
              ++T +EE  ++E     G   W  +A  +  +T  E + ++  
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH 84
               W + E+ +LID  +  G GNW  +    G  R  + CR  +   
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 37  KKGPWTSAEDAILIDYVKKHGEG-----NWNAVQK-NSGLFRCGKSCRLRWANHLRPNLK 90
            K  +T  ED  ++D V+K+         ++ +          G S R R+  +L   L+
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN--HTGNSIRHRFRVYLSKRLE 64

Query: 91  KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR 135
                 +  +++ +     GN                IK  ++  
Sbjct: 65  YVYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSAD 100

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 87  PNLKKGAFTQEEEQMIVELHAKMGNK------WARMAAHLPGRTDNEIKNYWNTRIKRR 139
           P+  K +FT EE++ I+++  K   +      +  ++ ++P  T N I++ +   + +R
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 86  RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLP 145
             +     +T EE+++  +  AK G +W +++  +  RT  ++K+Y     K + + GL 
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 146 LYPPE 150
              P 
Sbjct: 64  KETPN 68

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 87  PNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAG 143
                G +T EE + + EL  K GN WA + A L GR+ + +K+     +K     G
Sbjct: 19  DRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
            G +T  E   L +   KHG  +W  +    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 82  ANHLRPNLKKGAFTQEE----EQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWN 133
               R    +  +TQ +    E  + +      + W ++A  +P ++  +    + 
Sbjct: 9   LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 95  TQEE----EQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWN------TRIKRRQRAGL 144
           + +E    E+ +        ++WA +A  + GRT  E+K ++         I+   +   
Sbjct: 12  SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG-KVPF 70

Query: 145 PLYPPEVSFQALQESQCQNIN 165
           P Y          E + +N+ 
Sbjct: 71  PNYRTTGGNMKTDEKRFRNLK 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	474
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.72
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.7
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.65
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.59
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.57
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.56
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.51
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.47
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.47
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.45
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.44
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.15
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.42
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.4
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.39
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.37
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.35
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.33
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.31
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.24
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.23
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.87
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.21
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.18
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.14
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.89
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.88
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.84
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.76
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.71
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.71
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.67
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.47
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.45
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.37
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.35
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.27
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.25
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.04
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.9
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.9
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.88
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.96
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.76
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.74
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.61
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.48
2crg_A	70	Metastasis associated protein MTA3; transcription	97.47
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.34
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.23
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.18
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.91
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.83
2crg_A	70	Metastasis associated protein MTA3; transcription	96.79
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.79
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.7
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.41
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.68
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.68
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.64
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.22
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.35
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.0
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	87.91

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=1.2e-32  Score=235.62  Aligned_cols=104  Identities=48%  Similarity=0.932  Sum_probs=99.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWA  114 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs  114 (474)
                      .++||+||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            378999999999999999999999899999999986 9999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCHHHHHHHHHHHhhhH
Q 011938          115 RMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus       115 ~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      .||++|||||++|||+||+.+++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999876

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=2.1e-32  Score=235.63  Aligned_cols=104  Identities=29%  Similarity=0.566  Sum_probs=100.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMA  117 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IA  117 (474)
                      ||+||+|||++|+++|.+||.++|..||..|++ |+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            689999999999999999999899999999997 9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938          118 AHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus       118 k~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      ++|+|||++|||+||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999998876543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=5.7e-32  Score=240.62  Aligned_cols=106  Identities=44%  Similarity=0.788  Sum_probs=102.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMA  117 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IA  117 (474)
                      ||+||+|||++|+++|.+||.++|..||+.|++ |+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            799999999999999999998899999999987 9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhhhHHHcCC
Q 011938          118 AHLPGRTDNEIKNYWNTRIKRRQRAGL  144 (474)
Q Consensus       118 k~LpGRT~~QcKnRW~~~Lkkk~r~g~  144 (474)
                      ++|+|||++|||+||+++|+++...+.
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999998876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.3e-31  Score=237.11  Aligned_cols=105  Identities=34%  Similarity=0.619  Sum_probs=100.5

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN  111 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~  111 (474)
                      ..+..+||+||+|||++|+++|.+||. +|..||+.|++ |+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            346889999999999999999999999 99999999987 9999999999999999999999999999999999999999


Q ss_pred             ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938          112 KWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus       112 kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +|..||+.|+|||++|||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=1.3e-31  Score=236.95  Aligned_cols=106  Identities=46%  Similarity=0.915  Sum_probs=102.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK  112 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k  112 (474)
                      .|.+++|+||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~  100 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  100 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            57889999999999999999999998899999999987 99999999999999999999999999999999999999999


Q ss_pred             hHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938          113 WARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus       113 Ws~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      |..||++|||||+++||+||+.+++++
T Consensus       101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          101 WAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.2e-29  Score=230.16  Aligned_cols=106  Identities=47%  Similarity=0.910  Sum_probs=101.9

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK  112 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k  112 (474)
                      .|.+++|+||+|||++|+++|++||.++|..||+.|++ |+++||+.||.++|+|.+++++||+|||++|++++.+||++
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            56789999999999999999999998889999999987 99999999999999999999999999999999999999999


Q ss_pred             hHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938          113 WARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus       113 Ws~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      |..||++|||||+++||+||+.+++++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.5e-30  Score=234.76  Aligned_cols=118  Identities=28%  Similarity=0.558  Sum_probs=69.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN-KW  113 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~-kW  113 (474)
                      .++|++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            467999999999999999999998899999999986 9999999999999999999999999999999999999996 69


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhh
Q 011938          114 ARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSF  153 (474)
Q Consensus       114 s~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~  153 (474)
                      ..||+.|+|||+.||++||+++|.+.++++.+...++..+
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L  121 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII  121 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHH
Confidence            9999999999999999999999998877665544333333

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.5e-21  Score=154.75  Aligned_cols=67  Identities=30%  Similarity=0.572  Sum_probs=64.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHH
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEE   99 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED   99 (474)
                      .++.+++|+||+|||++|+++|++||.++|..||+.|++ |+++|||+||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            467899999999999999999999998899999999996 9999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.82  E-value=2.8e-21  Score=170.78  Aligned_cols=92  Identities=25%  Similarity=0.495  Sum_probs=61.4

Q ss_pred             HhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938           64 VQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        64 IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      ||+.|++ |+++||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|.+.+++
T Consensus         1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            7888987 9999999999999999999999999999999999999996 6999999999999999999999999988777


Q ss_pred             CCCCCCchhhhhhh
Q 011938          143 GLPLYPPEVSFQAL  156 (474)
Q Consensus       143 g~~~~p~e~~~~~~  156 (474)
                      +.+...++..+..+
T Consensus        80 ~~WT~eEd~~L~~~   93 (128)
T 1h8a_C           80 TSWTEEEDRIIYQA   93 (128)
T ss_dssp             SCCCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHH
Confidence            66554444433333

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.72  E-value=4.4e-18  Score=164.80  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=92.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC-----hhHHhhhhCCccccccchhhhhhccCCCCC-----------------
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGN-----WNAVQKNSGLFRCGKSCRLRWANHLRPNLK-----------------   90 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~n-----W~~IAk~l~~~Rt~kQCR~RW~n~L~p~lk-----------------   90 (474)
                      ...++|++||+|||++|+++|++||..+     |.+||+.|++ ||+.|||.||+++|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3567899999999999999999998743     9999999997 9999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 011938           91 ------------KGAFTQEEEQMIVELHAK-M--------------------------------GN--------------  111 (474)
Q Consensus        91 ------------kg~WT~EED~~LieLv~k-~--------------------------------G~--------------  111 (474)
                                  +..||.|||..|+..+.+ |                                +.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999999887 1                                11              


Q ss_pred             -----------ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938          112 -----------KWARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus       112 -----------kWs~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                                 .|.+||+.+|+||.+++|+||+..|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       5999999999999999999999988765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.70  E-value=9.8e-18  Score=147.98  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=78.4

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---CccccccchhhhhhccC-----CCCCCC-CCCHHHHHH
Q 011938           31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHLR-----PNLKKG-AFTQEEEQM  101 (474)
Q Consensus        31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L~-----p~lkkg-~WT~EED~~  101 (474)
                      ..++..++++||.|||++|+++|++||.++|..|++.+.   .+|++.+|++||+++++     |.+++| +|++||+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            345788899999999999999999999999999999862   24999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCChHH
Q 011938          102 IVELHAKMGNKWAR  115 (474)
Q Consensus       102 LieLv~k~G~kWs~  115 (474)
                      |++++..+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=1.4e-17  Score=135.10  Aligned_cols=58  Identities=28%  Similarity=0.376  Sum_probs=46.9

Q ss_pred             chhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938           77 CRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        77 CR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~  135 (474)
                      ..-||.++|+|++++++||+|||++|+++|++||++|+.||+.| |||++|||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 99999999999964

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=1.5e-16  Score=140.55  Aligned_cols=82  Identities=22%  Similarity=0.342  Sum_probs=74.5

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---Cccccccchhhhhhcc-----CCCCCCCCCCHHH-HHH
Q 011938           31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHL-----RPNLKKGAFTQEE-EQM  101 (474)
Q Consensus        31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L-----~p~lkkg~WT~EE-D~~  101 (474)
                      ..+...++++||.|||+.|+++|++||.++|..|++.+.   .+|++.+|++||+|++     +|.++++.|+++| +.+
T Consensus        24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            345677899999999999999999999999999999751   2499999999999999     8999999999999 899


Q ss_pred             HHHHHHHhCCC
Q 011938          102 IVELHAKMGNK  112 (474)
Q Consensus       102 LieLv~k~G~k  112 (474)
                      |++++..||++
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1e-16  Score=124.27  Aligned_cols=57  Identities=25%  Similarity=0.440  Sum_probs=54.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLK   90 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lk   90 (474)
                      ++.+++++||+|||++|+++|.+||.++|.+||+.|++ |++.|||+||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence            57899999999999999999999998899999999987 9999999999999999876

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.3e-16  Score=128.18  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=58.5

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCC
Q 011938           85 LRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLY  147 (474)
Q Consensus        85 L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~  147 (474)
                      .+|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.+++++.+.|.+..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~   65 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE   65 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            578999999999999999999999999999999999999999999999999999887766543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=125.59  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=57.1

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCC
Q 011938           84 HLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGL  144 (474)
Q Consensus        84 ~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~  144 (474)
                      +|+|.+++++||+|||++|++++++||++|.+||+ |+|||++|||+||+++|++.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999987653

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=1.3e-16  Score=120.30  Aligned_cols=52  Identities=50%  Similarity=0.923  Sum_probs=49.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      ++||+||+|||++|+++|.+||.++|..||+.|++ |+++|||.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57999999999999999999999899999999987 99999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.62  E-value=2e-16  Score=119.10  Aligned_cols=52  Identities=31%  Similarity=0.643  Sum_probs=48.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      +++++||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57899999999999999999999999999999987 99999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.61  E-value=3e-16  Score=125.04  Aligned_cols=64  Identities=25%  Similarity=0.354  Sum_probs=58.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCC-ccccccchhhhhhccCCCCCCCCCC
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLKKGAFT   95 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~-~Rt~kQCR~RW~n~L~p~lkkg~WT   95 (474)
                      ..+..++++||+|||++|+++|++||.++|..||+.|+. +|++.|||+||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            346788999999999999999999998899999999982 3999999999999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.59  E-value=6.9e-16  Score=119.56  Aligned_cols=55  Identities=25%  Similarity=0.492  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~  140 (474)
                      +|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999988653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=121.91  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCC
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLY  147 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~  147 (474)
                      .+.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.++++.+..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~   66 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSG   66 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCCh
Confidence            4678999999999999999999999 7999999999999999999999999999887765543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.57  E-value=2.1e-15  Score=113.51  Aligned_cols=50  Identities=30%  Similarity=0.577  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998 899999999999999999999999874

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.56  E-value=1.1e-15  Score=120.71  Aligned_cols=56  Identities=36%  Similarity=0.539  Sum_probs=49.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCC-ccccccchhhhhhccCCCCC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLK   90 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~-~Rt~kQCR~RW~n~L~p~lk   90 (474)
                      ..+|++||+|||++|+++|++||.++|..||+.++. +|++.|||+||+++++++++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            457899999999999999999999999999998762 49999999999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=3.5e-15  Score=112.45  Aligned_cols=50  Identities=34%  Similarity=0.741  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 599999999999999999999998864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=2.9e-15  Score=116.46  Aligned_cols=55  Identities=20%  Similarity=0.390  Sum_probs=51.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      .+.+++++||+|||++|+++|++||.++|.+||+.|++ |+++|||+||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence            36789999999999999999999998799999999997 99999999999999865

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3e-15  Score=120.83  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCC
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG------NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPL  146 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G------~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~  146 (474)
                      +|.+++++||+|||++|+++|.+||      ++|.+||++|+|||+.|||+||+++|++..+.|.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~   69 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPV   69 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            5788999999999999999999999      789999999999999999999999999988887764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=6.5e-15  Score=111.57  Aligned_cols=50  Identities=28%  Similarity=0.478  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhH
Q 011938           90 KKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP--GRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk  139 (474)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            579999999999999999999 69999999999  999999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.54  E-value=5.6e-15  Score=117.68  Aligned_cols=59  Identities=24%  Similarity=0.364  Sum_probs=53.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhHHHc
Q 011938           84 HLRPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP--GRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        84 ~L~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      ...+..++++||+|||++|+++|.+|| ++|..||+.|+  |||+.|||+||+++|++.+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            346678899999999999999999999 69999999999  999999999999999987654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=5.8e-15  Score=111.84  Aligned_cols=49  Identities=31%  Similarity=0.489  Sum_probs=46.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC--CccccccchhhhhhccC
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG--LFRCGKSCRLRWANHLR   86 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCR~RW~n~L~   86 (474)
                      ++|+||+|||++|+++|.+||.++|..||+.++  + |++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence            589999999999999999999889999999999  5 999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=1.1e-14  Score=113.22  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      .+.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 7999999999999999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.51  E-value=1e-14  Score=112.80  Aligned_cols=52  Identities=25%  Similarity=0.455  Sum_probs=47.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938           34 VILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        34 p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      ..+.+++||+|||++|+++|++||.++|.+||+.|+++|+++|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999998899999999993499999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8.6e-15  Score=118.17  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCC-----CChhHHhhhhCCccccccchhhhhhccCCCCCCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGE-----GNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGA   93 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~-----~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~   93 (474)
                      +|.+++++||+|||++|+++|.+||.     .+|.+||+.|++ |++.|||.||+++|.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence            57889999999999999999999996     699999999997 9999999999999998777664

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=6e-15  Score=116.44  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG   92 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg   92 (474)
                      .|.+++++||+|||++|+++|++||. +|.+||+ +.+ |+++|||.||.++|+|.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence            47899999999999999999999999 9999999 655 999999999999999876654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.47  E-value=5.4e-14  Score=111.07  Aligned_cols=51  Identities=31%  Similarity=0.484  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCC--CCCHHHHHHHHHHHhhhH
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk  139 (474)
                      .++++||+|||++|+++|.+||. +|..||+.++  |||+.|||+||++++|..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            47899999999999999999994 8999999865  999999999999988753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.45  E-value=2.6e-14  Score=114.81  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=53.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCC
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKK   91 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkk   91 (474)
                      .+|.+++++||+|||++|+++|++||. +|..||+.|++ |++.||+.||+++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999 99999999997 99999999999999876655

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.44  E-value=9.3e-14  Score=107.37  Aligned_cols=50  Identities=18%  Similarity=0.379  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC-CCCHHHHHHHHHHHh
Q 011938           87 PNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP-GRTDNEIKNYWNTRI  136 (474)
Q Consensus        87 p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp-GRT~~QcKnRW~~~L  136 (474)
                      ..+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.|||+||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999999 89999999999 999999999998864

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.15  E-value=1.1e-14  Score=121.79  Aligned_cols=56  Identities=25%  Similarity=0.316  Sum_probs=53.0

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938           84 HLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        84 ~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      .+.|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||++++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.42  E-value=7e-14  Score=123.33  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcccC
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNIN  165 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~~~  165 (474)
                      .+..++|+||+|||++|+++|.+||.+|..||+.|+|||..||+.||+++|.+.++++.+...++..+..+....+..+.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45678999999999999999999999999999999999999999999999999888776555544444444333343333


Q ss_pred             Ccc
Q 011938          166 GIN  168 (474)
Q Consensus       166 ~~~  168 (474)
                      .+.
T Consensus        86 ~Ia   88 (126)
T 3osg_A           86 IIA   88 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.40  E-value=9.3e-14  Score=118.31  Aligned_cols=69  Identities=25%  Similarity=0.471  Sum_probs=58.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhh
Q 011938           88 NLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQAL  156 (474)
Q Consensus        88 ~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~  156 (474)
                      ++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.++++.+...++..+..+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~   70 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA   70 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence            468999999999999999999997 699999999999999999999999998877765554444433333

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.39  E-value=2.2e-13  Score=117.54  Aligned_cols=81  Identities=20%  Similarity=0.296  Sum_probs=68.3

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---Cccccccchhhhhhcc-----CCCCCCCCCCHHHHHH-
Q 011938           31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHL-----RPNLKKGAFTQEEEQM-  101 (474)
Q Consensus        31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L-----~p~lkkg~WT~EED~~-  101 (474)
                      ..+...++++||.|||++|+++|++||.++|..|++.+.   .+||+.+|++||++++     +|.+++|.-+++|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            345788899999999999999999999999999999762   2499999999999998     6899999888777655 


Q ss_pred             HHHHHHHhCC
Q 011938          102 IVELHAKMGN  111 (474)
Q Consensus       102 LieLv~k~G~  111 (474)
                      +++|+..+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887664

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.37  E-value=6.8e-13  Score=110.02  Aligned_cols=69  Identities=23%  Similarity=0.461  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhh----hCCccccccchhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKN----SGLFRCGKSCRLRWANHL-----RPNLKKG-AFTQEEEQMIVELHAK  108 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~----l~~~Rt~kQCR~RW~n~L-----~p~lkkg-~WT~EED~~LieLv~k  108 (474)
                      ++||+|||++|+++|++||.|+|..|++.    +++ ||+.+|++||+|++     .|.+++| +...++..+++.|++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999996    665 99999999999988     6766655 6778888889988875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=5.5e-13  Score=108.08  Aligned_cols=55  Identities=22%  Similarity=0.291  Sum_probs=48.1

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCC
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKK   91 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkk   91 (474)
                      .|.++||+||+|||++|+++|++||. +|.+||+.| + |++.||+.||.. |....+.
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence            58999999999999999999999998 699999999 5 999999999985 5444443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.33  E-value=1.2e-12  Score=106.12  Aligned_cols=52  Identities=12%  Similarity=0.334  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      .+...+++||.|||.+|++++.+||    ++|.+||++|||||.+|||+||+.+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3456889999999999999999999    689999999999999999999998765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.31  E-value=6e-13  Score=118.00  Aligned_cols=78  Identities=19%  Similarity=0.311  Sum_probs=61.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcccCCcc
Q 011938           91 KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGIN  168 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~~~~~~  168 (474)
                      +|+||+|||++|+++|.+|| .+|..||..|+|||+.||+.||.++|.+.++++.+...++..+..+....+..+..+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            78999999999999999999 6799999999999999999999999999888876554444444444333343333333

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.30  E-value=7.6e-13  Score=113.47  Aligned_cols=66  Identities=21%  Similarity=0.356  Sum_probs=56.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhh
Q 011938           91 KGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQAL  156 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~  156 (474)
                      +|+||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.+...++..+..+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~   67 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK   67 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence            589999999999999999996 799999999999999999999999999887766554444444333

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=106.17  Aligned_cols=52  Identities=21%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc
Q 011938           31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~   84 (474)
                      .+.....+++||+|||++|+++|++|| ++|.+||+++++ |++.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            345667789999999999999999999 699999999997 9999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=2.3e-12  Score=105.84  Aligned_cols=48  Identities=17%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938           88 NLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        88 ~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~  135 (474)
                      ...+++||+|||++|++++++||++|.+||++|++||+.||++||+++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999999765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=7.8e-12  Score=103.63  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhH
Q 011938           92 GAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      ++||+|||+.|+++|++||. +|+.|++.    |+|||+++||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999998 89999985    89999999999999999743

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.24  E-value=4.1e-12  Score=102.94  Aligned_cols=56  Identities=13%  Similarity=0.299  Sum_probs=49.7

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccC
Q 011938           30 TARGVILKKGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        30 ~~~~p~lkKg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      ....+...+++||++||++|+++|.+||.   .+|.+||+.|++ |+.+||+.||.+++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            34456778999999999999999999993   489999999997 999999999998765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.23  E-value=8.2e-12  Score=110.21  Aligned_cols=66  Identities=24%  Similarity=0.465  Sum_probs=55.3

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhh-----hHHHcCCCCCCchh
Q 011938           85 LRPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIK-----RRQRAGLPLYPPEV  151 (474)
Q Consensus        85 L~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lk-----kk~r~g~~~~p~e~  151 (474)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++     +.++++. ..++++
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~-~~p~e~   86 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGE-PVPQDL   86 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCS-CCCHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCC-CCCHHH
Confidence            456778999999999999999999998 99999987    489999999999999998     4445532 345543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-11  Score=106.65  Aligned_cols=67  Identities=25%  Similarity=0.469  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC----CCCCHHHHHHHHHHHhh-----hHHHcCCCCCCchhhh
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHL----PGRTDNEIKNYWNTRIK-----RRQRAGLPLYPPEVSF  153 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~L----pGRT~~QcKnRW~~~Lk-----kk~r~g~~~~p~e~~~  153 (474)
                      ....++++||.|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+++++     +.++++.++ |.+...
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~-P~~~l~   84 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPV-PQELLN   84 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSC-CCHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCC-CHHHHH
Confidence            34568999999999999999999997 999999865    89999999999999996     445555444 444433

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.87  E-value=8.9e-13  Score=110.28  Aligned_cols=55  Identities=22%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCC
Q 011938           31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP   87 (474)
Q Consensus        31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p   87 (474)
                      ...+.+++|+||+|||++|+++|.+||. +|..||+.|++ |++.||+.||.++|+.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            4457899999999999999999999999 89999999997 9999999999998864

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.21  E-value=1.8e-11  Score=96.04  Aligned_cols=49  Identities=22%  Similarity=0.414  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHh---ccCCCCCHHHHHHHHHHHhhh
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMA---AHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IA---k~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      ++.+||+|||+.|+++|++||.+|..|+   .++++||..+||+||+++.|+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6889999999999999999999999999   678999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.18  E-value=1.4e-11  Score=119.53  Aligned_cols=55  Identities=24%  Similarity=0.517  Sum_probs=48.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938           87 PNLKKGAFTQEEEQMIVELHAKMGNK------WARMAAHLPGRTDNEIKNYWNTRIKRRQR  141 (474)
Q Consensus        87 p~lkkg~WT~EED~~LieLv~k~G~k------Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~r  141 (474)
                      +.+++++||+|||++|+++|+++|++      |.+||++|+|||++|||+||+++|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35688999999999999999999985      99999999999999999999999998754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.14  E-value=5.4e-11  Score=100.59  Aligned_cols=55  Identities=20%  Similarity=0.382  Sum_probs=47.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhhH--HHcCC
Q 011938           90 KKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIKRR--QRAGL  144 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk--~r~g~  144 (474)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||.+|||+||+.+++..  +..|.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~   67 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK   67 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            467999999999999999996    67999999999999999999999988764  34454

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=5.3e-11  Score=105.21  Aligned_cols=53  Identities=23%  Similarity=0.458  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhh
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lkk  138 (474)
                      ....++++||.|||+.|+++|++||. +|+.|++.    |+|||+.|||+||+++++.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            33457899999999999999999997 89999986    4899999999999999963

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=2.1e-09  Score=83.69  Aligned_cols=48  Identities=13%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      ..++||+||++++++++.+||++|..||..|++||..||+.+|....|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999977543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.88  E-value=6.8e-10  Score=93.82  Aligned_cols=47  Identities=13%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhcc
Q 011938           38 KGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      +++||+|||++|++++.+|+.   .+|.+||+.+++ |+.+||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            579999999999999999983   479999999997 99999999999864

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.84  E-value=4.2e-09  Score=88.96  Aligned_cols=66  Identities=11%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             cccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccC-----CCCCHHHHHHHHHHHhhhHHHcC
Q 011938           74 GKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHL-----PGRTDNEIKNYWNTRIKRRQRAG  143 (474)
Q Consensus        74 ~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~L-----pGRT~~QcKnRW~~~Lkkk~r~g  143 (474)
                      ..=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++..+..
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34578999999976    89999999999999999999999999999     58999999999999888776543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.76  E-value=8.4e-09  Score=99.41  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=56.2

Q ss_pred             ChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           60 NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        60 nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      +|+++-..+.. ++...+ .+++.--......++||+||++++++++.+||++|..||+.|++||..|||++|++..|+
T Consensus       104 ~~kQ~~~~L~~-~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          104 NIKQTNSALKE-KLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHH-HSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHH-HHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            55555555532 333222 233331112234678999999999999999999999999999999999999999987654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.71  E-value=1.1e-08  Score=82.48  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           88 NLKKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        88 ~lkkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      ..+.+.||.|||++|.+++++|+    ++|.+||++| |||..||++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34678999999999999999997    5699999998 99999999999987654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1.4e-08  Score=79.01  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      ....++||+||++++++++.+||. +|..||+.+++ |+..||+.+|....+
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHTC
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhcC
Confidence            345689999999999999999997 99999999997 999999999976543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.67  E-value=1e-08  Score=80.54  Aligned_cols=49  Identities=18%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhh---hhCCccccccchhhhhhccCC
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQK---NSGLFRCGKSCRLRWANHLRP   87 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk---~l~~~Rt~kQCR~RW~n~L~p   87 (474)
                      ++.+||+|||+.|++.|++||. +|..|+.   .+. +|+...+++||++..+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence            6789999999999999999999 9999995   444 49999999999997653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.47  E-value=7.6e-08  Score=101.83  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHh
Q 011938           92 GAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                      ..||+||-+++++++.+||.+|..||+.++.||..|||++|.+..
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999997543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.45  E-value=1e-07  Score=76.94  Aligned_cols=50  Identities=16%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      ..+++.||.|||++|.+++.+|+.   ..|.+||+.+|  |+..+|+.||..+.+
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            344679999999999999999984   47999999983  999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.41  E-value=1.2e-07  Score=73.67  Aligned_cols=48  Identities=31%  Similarity=0.572  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCChhHHhh-hhCCccccccchhhhhhccC
Q 011938           38 KGPWTSAEDAILIDYVKKH--------GEGNWNAVQK-NSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~ky--------G~~nW~~IAk-~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      +.+||.|||++|+++|.+|        |..-|+.+++ .++. |+..+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence            5689999999999999999        4446999999 7775 999999999999885

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.37  E-value=3.4e-07  Score=71.09  Aligned_cols=47  Identities=21%  Similarity=0.413  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-hHHHhc-cCCCCCHHHHHHHHHHHhh
Q 011938           91 KGAFTQEEEQMIVELHAKM--------GNK-WARMAA-HLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~--------G~k-Ws~IAk-~LpGRT~~QcKnRW~~~Lk  137 (474)
                      |.+||+|||+.|++.|.++        |++ |.+||+ .+++||-.+||+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        555 999999 8999999999999988764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.35  E-value=3.4e-07  Score=74.12  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           90 KKGAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      ....||.+|+.+|.+++..|+.    +|.+||..++|||..+|+.||..+++
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3468999999999999999984    59999999999999999999998744

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.27  E-value=4.7e-07  Score=73.30  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=43.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccCC
Q 011938           38 KGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLRP   87 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p   87 (474)
                      ...||.+|+++|.+++..|+.   ++|.+||..+++ |+..+|+.||..+++-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence            357999999999999999986   479999999998 9999999999987653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.25  E-value=6.9e-07  Score=86.17  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=46.0

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      ....++||.||++++++++.+||. +|..||+.+++ |+..||+.+|.++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            345779999999999999999998 99999999998 999999999998765

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=1e-05  Score=63.30  Aligned_cols=50  Identities=16%  Similarity=0.297  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHHH
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAA-HLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk-~LpGRT~~QcKnRW~~~  135 (474)
                      .|.++...||+||-++..+.+.+||.+|..|++ .|++||..||..+|...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            467788899999999999999999999999998 69999999999988653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.90  E-value=3.8e-05  Score=77.25  Aligned_cols=101  Identities=22%  Similarity=0.275  Sum_probs=79.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchh-------hhhhc---------------------------
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL-------RWANH---------------------------   84 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~-------RW~n~---------------------------   84 (474)
                      +.||..|...++.++.+||..+|..||..+++ ++...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999986 88777642       22100                           


Q ss_pred             -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHHhc------------cCCCCCHHHHHHHH
Q 011938           85 -------------L---RPNLKKGAFTQEEEQMIVELHAKMGN----KWARMAA------------HLPGRTDNEIKNYW  132 (474)
Q Consensus        85 -------------L---~p~lkkg~WT~EED~~LieLv~k~G~----kWs~IAk------------~LpGRT~~QcKnRW  132 (474)
                                   |   -+..++..||++||..|+-++.+||-    .|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   01224567999999999999999996    4999962            34679999999999


Q ss_pred             HHHhhhHH
Q 011938          133 NTRIKRRQ  140 (474)
Q Consensus       133 ~~~Lkkk~  140 (474)
                      +.+++--.
T Consensus       270 ~tLi~~ie  277 (304)
T 1ofc_X          270 NTLITLIE  277 (304)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.90  E-value=1.1e-05  Score=67.66  Aligned_cols=49  Identities=14%  Similarity=0.336  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938           93 AFTQEEEQMIVELHAKMGN---KWARMAAHLPGRTDNEIKNYWNTRIKRRQR  141 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G~---kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r  141 (474)
                      -||.|||+.|+..+++-|.   .|..||+.|.+|+.+||++||+.+++=-.+
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            5999999999999999987   699999999999999999999998764443

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.88  E-value=2.6e-05  Score=65.79  Aligned_cols=63  Identities=11%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCC-----CCCHHHHHHHHHHHhhhHHHcCCC
Q 011938           79 LRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLP-----GRTDNEIKNYWNTRIKRRQRAGLP  145 (474)
Q Consensus        79 ~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~Lp-----GRT~~QcKnRW~~~Lkkk~r~g~~  145 (474)
                      +.|..+|.    ...||.||...|++|+++|.-+|..|+..+.     .||-.++|.||..+.++..+...+
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~   89 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV   89 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence            45666665    3689999999999999999999999998773     799999999999998888766544

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.96  E-value=3.5e-06  Score=67.10  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           93 AFTQEEEQMIVELHAKMGN---KWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G~---kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      .||.|||+.|+..+++-|.   .|+.||+.| +|+.+||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999997   699999999 9999999999998765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.76  E-value=5.1e-06  Score=67.19  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHH
Q 011938           91 KGAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWN  133 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~  133 (474)
                      ...||.||+++|.++.++|+.    +|.+||+.+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999985    6999999999999999999884

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.74  E-value=4.8e-06  Score=67.33  Aligned_cols=44  Identities=14%  Similarity=0.279  Sum_probs=39.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---ChhHHhhhhCCccccccchhhhh
Q 011938           38 KGPWTSAEDAILIDYVKKHGEG---NWNAVQKNSGLFRCGKSCRLRWA   82 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCR~RW~   82 (474)
                      .+.||.+|+++|.+++.+|+.+   .|.+||+.+|+ |+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence            4589999999999999999864   79999999997 99999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=5.8e-05  Score=59.02  Aligned_cols=51  Identities=14%  Similarity=0.085  Sum_probs=44.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhCCccccccchhhhhhc
Q 011938           32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQK-NSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCR~RW~n~   84 (474)
                      ..|.++...||+||-++..+.+.+||. +|..|++ .++. |+..+|...|...
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence            346778889999999999999999999 9999999 4887 9999998877653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.48  E-value=0.00014  Score=61.20  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~  135 (474)
                      ...||+||.++..+.+..||.+|..||..|++||..+|-.+|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            457999999999999999999999999999999999999988653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.47  E-value=0.0002  Score=57.15  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWARMAA-HLPGRTDNEIKNYWNT  134 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs~IAk-~LpGRT~~QcKnRW~~  134 (474)
                      ....||+||-.+..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            34589999999999999999999999999 5999999999999874

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.34  E-value=0.00016  Score=76.77  Aligned_cols=48  Identities=17%  Similarity=0.308  Sum_probs=44.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      ....+||.+|-+++++++.+||. +|..||+.+++ |+..|||.+|.++-
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            45689999999999999999998 99999999998 99999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.23  E-value=0.00021  Score=60.34  Aligned_cols=49  Identities=18%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC----Cccccccchhhhhhcc
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG----LFRCGKSCRLRWANHL   85 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCR~RW~n~L   85 (474)
                      ++..+||.||++.|++++++|+. .|..|+..+.    .+|+..+.+.||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34489999999999999999998 9999999983    2499999999998754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.18  E-value=0.00029  Score=57.67  Aligned_cols=50  Identities=14%  Similarity=0.441  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------ChHHHhccCC----CCCHHHHHHHHHHHhhhH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGN----------KWARMAAHLP----GRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~----------kWs~IAk~Lp----GRT~~QcKnRW~~~Lkkk  139 (474)
                      +...||.+|-..||+++..+..          .|..||..|.    .||+.||+++|.++.+.-
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            3568999999999999976421          4999998873    699999999999976653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.91  E-value=0.00025  Score=58.08  Aligned_cols=49  Identities=20%  Similarity=0.451  Sum_probs=39.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CChhHHhhhhC---Cccccccchhhhhhcc
Q 011938           37 KKGPWTSAEDAILIDYVKKHGE---------GNWNAVQKNSG---LFRCGKSCRLRWANHL   85 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~---------~nW~~IAk~l~---~~Rt~kQCR~RW~n~L   85 (474)
                      +...||.+|-.+|+++...+..         ..|..||..|.   ..|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4678999999999999976421         15999998863   4699999999998754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.83  E-value=0.00074  Score=56.83  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=40.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhh
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWAN   83 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n   83 (474)
                      ...||+||.++..+....||. +|..||+.++. |+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence            468999999999999999998 99999999997 999999887764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.79  E-value=0.00094  Score=53.22  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhCCccccccchhhhhh
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQK-NSGLFRCGKSCRLRWAN   83 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCR~RW~n   83 (474)
                      ....||+||-++..+.+.+||. +|..|++ .+++ |+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence            3458999999999999999999 9999999 5887 999999887764

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.79  E-value=0.0022  Score=66.13  Aligned_cols=105  Identities=19%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchh-------hhhhc---------------------------
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL-------RWANH---------------------------   84 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~-------RW~n~---------------------------   84 (474)
                      +.||..|=..++.++.+||..+-..||..|+++++...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999973377666551       11100                           


Q ss_pred             -------------c----CCC-CCCCCCCHHHHHHHHHHHHHhCC----ChHHHhcc------------CCCCCHHHHHH
Q 011938           85 -------------L----RPN-LKKGAFTQEEEQMIVELHAKMGN----KWARMAAH------------LPGRTDNEIKN  130 (474)
Q Consensus        85 -------------L----~p~-lkkg~WT~EED~~LieLv~k~G~----kWs~IAk~------------LpGRT~~QcKn  130 (474)
                                   |    .+. .++..||++||..|+-++.+||-    .|.+|-..            +..||+.+|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    000 13457999999999999999994    49999432            35699999999


Q ss_pred             HHHHHhhhHHHcC
Q 011938          131 YWNTRIKRRQRAG  143 (474)
Q Consensus       131 RW~~~Lkkk~r~g  143 (474)
                      |.+.+++--.|..
T Consensus       284 Rc~tLi~~IeKE~  296 (374)
T 2y9y_A          284 RGNTLLQCLEKEF  296 (374)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988655543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.70  E-value=0.0059  Score=57.16  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChHHHhc--cC------------CCCCHHHHHHHHHHHhhhH
Q 011938           93 AFTQEEEQMIVELHAKMG-NKWARMAA--HL------------PGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G-~kWs~IAk--~L------------pGRT~~QcKnRW~~~Lkkk  139 (474)
                      .||.+||..|+..+.+|| .+|.+|..  .|            ..++...+..|-..+|+-.
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            599999999999999999 78999963  11            1256778999988877643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.41  E-value=0.002  Score=54.02  Aligned_cols=45  Identities=13%  Similarity=0.361  Sum_probs=40.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--CChhHHhhhhCCccccccchhhhhh
Q 011938           38 KGPWTSAEDAILIDYVKKHGE--GNWNAVQKNSGLFRCGKSCRLRWAN   83 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCR~RW~n   83 (474)
                      ---||.|||..++...++.|.  ..|..||+.+++ |+..|+++|++.
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~   79 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE   79 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence            347999999999999999985  479999999986 999999999976

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.68  E-value=0.0018  Score=51.61  Aligned_cols=45  Identities=13%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CChhHHhhhhCCccccccchhhhhhccC
Q 011938           40 PWTSAEDAILIDYVKKHGE--GNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      .||.|||..|+..+++.|.  ..|..||+.+ + |++.|+..||+..+.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999886  4799999999 3 999999999987553

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.68  E-value=0.026  Score=47.54  Aligned_cols=49  Identities=18%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC----Cccccccchhhhhhcc
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG----LFRCGKSCRLRWANHL   85 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCR~RW~n~L   85 (474)
                      ++...||.||...|.+++++|.- .|-.|+....    ..|+..+.+.||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34468999999999999999998 9999998874    2488899999998754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.64  E-value=0.07  Score=42.00  Aligned_cols=51  Identities=8%  Similarity=0.017  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---hHHHhccC--CCCCHHHHHHHHHHHhhhH
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGNK---WARMAAHL--PGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~k---Ws~IAk~L--pGRT~~QcKnRW~~~Lkkk  139 (474)
                      ..+-.||+|..++.++++.++|..   |..|.+.|  +|.|..+|+.+.+.+....
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            356789999999999999999965   78998776  6899999999988765443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.22  E-value=0.14  Score=51.53  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938           91 KGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      -+.||..+...++.++.+||. .|..||..|+|+|..+|+.++....++-
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            357999999999999999997 5999999999999999988877766543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.35  E-value=0.24  Score=46.12  Aligned_cols=51  Identities=12%  Similarity=0.212  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CChHHHhc--cCCCCCHHHHHHHHHHHhhhHH
Q 011938           90 KKGAFTQEEEQMIVELHAKMG---NKWARMAA--HLPGRTDNEIKNYWNTRIKRRQ  140 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G---~kWs~IAk--~LpGRT~~QcKnRW~~~Lkkk~  140 (474)
                      ....||+.|-..|++++.+||   .+|..|++  .|.+||..+|+.++...+....
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~   61 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI   61 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            456899999999999999999   47999985  4789999999998887776543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.00  E-value=0.19  Score=49.61  Aligned_cols=28  Identities=36%  Similarity=0.639  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhh
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQK   66 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk   66 (474)
                      ..|+.+||..|+..|.+||.|+|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3699999999999999999999999975

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=87.91  E-value=0.68  Score=36.36  Aligned_cols=49  Identities=8%  Similarity=-0.006  Sum_probs=38.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC--ChhHHhhhhCC-ccccccchhhhhh
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEG--NWNAVQKNSGL-FRCGKSCRLRWAN   83 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~--nW~~IAk~l~~-~Rt~kQCR~RW~n   83 (474)
                      ...+-.||+|..++.+++|.+.|..  .|+.|.+.|+. +.|..+++-|.++
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4456789999999999999999952  38899999875 3577777665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	474
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-11
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-19
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-18
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	3e-04
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-17
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-08
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	5e-17
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-08
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-14
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	8e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-08

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (201), Expect = 4e-20
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87
          L KGPWT  ED  LI  V+K+G   W+ + K+    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 89  LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIK 137
           L KG +T+EE+Q +++L  K G  +W+ +A HL GR   + +  W+  + 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.9 bits (192), Expect = 7e-19
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87
          K  WT  ED  L   V+++G  +W  +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 91  KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNT 134
           K  +T+EE++ + +L  + G + W  +A +LP RTD + ++ W  
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.8 bits (194), Expect = 8e-19
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 38  KGPWTSAEDAILIDYVKKHGEG-----NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92
           K  +T  ED  ++D V+K+         ++ +         G S R R+  +L   L+  
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 93  AFTQEEEQMIVELHAKMGN 111
               +  +++ +    +  
Sbjct: 60  YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (144), Expect = 5e-12
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 91  KGAFTQEEEQMIVELHAKMGNK------WARMAAHLPGRTDNEIKNYWNTRIKRR 139
           K +FT EE++ I+++  K   +      +  ++ ++P  T N I++ +   + +R
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.8 bits (191), Expect = 2e-18
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 40  PWTSAEDAILIDYVKKHGEGNWNAVQKN---SGLFRCGKSCRLRWANHLR-----PNLKK 91
           P++ AE   L++ V+  G G W  V+     +   R     + +W   +      P  ++
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 92  GAFTQEEE-QMIVELHAKMGNK 112
           G    ++    ++  HA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 93  AFTQEEEQMIVELHAKMGNK-----WARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
            F+  E + +VE    +G         R   +   RT  ++K+ W T +     
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 2e-17
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLR 86
          K+  W   ED  L   V+K+GEGNW+ +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 90  KKGAFTQEEEQMIVELHAKMGNK-WARMAAHLP--GRTDNEIKNYWNTRIK 137
           K+ A+  EE++ +     K G   W+++  H     RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (178), Expect = 5e-17
 Identities = 23/47 (48%), Positives = 38/47 (80%)

Query: 91  KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK 137
           K ++T+EE+++I + H ++GN+WA +A  LPGRTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 2e-12
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR 86
          K  WT  ED I+    K+ G   W  + K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 2e-16
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF-RCGKSCRLRWANHLRPNL 89
          KK  WT  E   +   V+K+GEGNW A+ KN     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 90  KKGAFTQEEEQMIVELHAKMGNK-WARMAAH--LPGRTDNEIKNYWNTRIKRR 139
           KK  +T EE + +     K G   WA ++ +     RT   IK+ W T  +  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 94  FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPE 150
           +T EE+++  +  AK G +W +++  +  RT  ++K+Y     K + + GL    P 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 38  KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
              WT  E  +    + K G   W  + K  G  R     +     + +  +K G   + 
Sbjct: 2   SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 98  EEQ 100
             Q
Sbjct: 60  PNQ 62

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 90  KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138
               +T EE+ + V+   K G  +  ++  +  ++  ++KN++    +R
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL-RPNLKKGAFT 95
              WT+ E  + +  ++K+G  ++ A+    G  +     +  + N+  R N+ +    
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQE 61

Query: 96 QEEE 99
           E E
Sbjct: 62 WEAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 8/53 (15%), Positives = 21/53 (39%)

Query: 86  RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138
           +       ++++E++   E   +    +  +A+ L  +T  E   Y+    K 
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRW 81
           + PWT  +  +L   ++++  G+ +   K +     +  + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 9e-10
 Identities = 6/51 (11%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 86  RPNLKKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYW 132
           R    +  +TQ +++++     +      + W ++A  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 8e-10
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 41 WTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH 84
          WT+ E+  L++ V   G GNW  V       +  + C   +  +
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 94  FTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWN 133
           +T +EE  ++E     G   W  +A  +  +T  E + ++ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRWANHLRPNLKK 91
          PW++ E+      +  + +   +     +     R  +  +  +   L  ++K 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 94  FTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIK 137
           ++ +E +      A       ++WA +A  + GRT  E+K ++   ++
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 80  RWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK---WARMAAHLPGRTDNEIKNYWNTRI 136
             +       K   +T+E +++I+ +  + G +   ++ ++  L  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 137 KRRQRA 142
           +    A
Sbjct: 82  QLFHTA 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	474
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.68
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.56
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.52
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.44
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.4
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.29
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.25
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.21
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.16
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.13
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.06
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.04
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.86
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.78
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.69
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.01
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.91
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.77
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.6
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.03
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.84
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.79
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.77
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.33
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	92.1
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.23
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.01

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5.6e-18  Score=126.99  Aligned_cols=52  Identities=50%  Similarity=0.923  Sum_probs=49.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      ++||+||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            57999999999999999999998899999999986 99999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.9e-19  Score=148.31  Aligned_cols=71  Identities=18%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----ChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHh
Q 011938           38 KGPWTSAEDAILIDYVKKHGEG-----NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKM  109 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~-----nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~  109 (474)
                      |++||+|||++|+++|.+||..     +|.+||+.|++ |+++|||.||.++|+|.++++.||++||++|+.++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     49999999997 99999999999999999999999999999988766443

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5e-17  Score=120.65  Aligned_cols=50  Identities=30%  Similarity=0.649  Sum_probs=47.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      |++||+|||++|+++|++||.++|.+||+.|++ |++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            689999999999999999999899999999986 99999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.5e-16  Score=116.84  Aligned_cols=47  Identities=49%  Similarity=0.987  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      |++||+|||++|+++|++||++|+.||++|||||++|||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3e-16  Score=117.44  Aligned_cols=50  Identities=34%  Similarity=0.753  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      ++||+||+|||++|+++|.+|| .+|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 5799999999999999999999998865

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.56  E-value=8.3e-16  Score=125.25  Aligned_cols=74  Identities=19%  Similarity=0.443  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhhh---CCccccccchhhhhhcc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNS---GLFRCGKSCRLRWANHL-----RPNLKKGAFTQEEEQMIVELHAKMG  110 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l---~~~Rt~kQCR~RW~n~L-----~p~lkkg~WT~EED~~LieLv~k~G  110 (474)
                      .+||+|||++|+++|++||.++|..|++.+   ..+|++.||++||+|+|     ++..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999864   23599999999999988     5778899999776   444444455


Q ss_pred             CChHH
Q 011938          111 NKWAR  115 (474)
Q Consensus       111 ~kWs~  115 (474)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.5e-15  Score=109.45  Aligned_cols=48  Identities=29%  Similarity=0.593  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           91 KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      |++||+|||++|+++|.+|| ++|.+||..|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999999865

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-15  Score=111.89  Aligned_cols=54  Identities=35%  Similarity=0.541  Sum_probs=48.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC-CccccccchhhhhhccCCCCC
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG-LFRCGKSCRLRWANHLRPNLK   90 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCR~RW~n~L~p~lk   90 (474)
                      ||++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999989999999843 249999999999999988764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.8e-14  Score=118.17  Aligned_cols=56  Identities=21%  Similarity=0.439  Sum_probs=50.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------hHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCC
Q 011938           91 KGAFTQEEEQMIVELHAKMGNK------WARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPL  146 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~k------Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~  146 (474)
                      |+.||+|||++|+++|.+||.+      |.+||+.|||||++|||+||+++|.+.++++.+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t   62 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEV   62 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCC
Confidence            6899999999999999999975      9999999999999999999999999987665443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=106.50  Aligned_cols=50  Identities=30%  Similarity=0.459  Sum_probs=45.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC-CccccccchhhhhhccC
Q 011938           37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG-LFRCGKSCRLRWANHLR   86 (474)
Q Consensus        37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCR~RW~n~L~   86 (474)
                      ++++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            588999999999999999999999999998864 25999999999998653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.4e-14  Score=103.87  Aligned_cols=48  Identities=29%  Similarity=0.496  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC--CCCCHHHHHHHHHHHhh
Q 011938           90 KKGAFTQEEEQMIVELHAKMGN-KWARMAAHL--PGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~-kWs~IAk~L--pGRT~~QcKnRW~~~Lk  137 (474)
                      ++++||+|||++|+++|.+||. +|..||+.+  .|||+.|||+||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999996 899999875  59999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.2e-14  Score=108.04  Aligned_cols=58  Identities=24%  Similarity=0.416  Sum_probs=52.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCC
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYP  148 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p  148 (474)
                      ...||+|||++|++++.+||.+|..||++|++||+.|||+||+.++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            3579999999999999999999999999999999999999999999988776655433

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=4.3e-14  Score=103.55  Aligned_cols=47  Identities=28%  Similarity=0.554  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      |++||+|||++|+++|++||. +|..||+.|++ |++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~g-Rt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCC-CCHHHHHHHHHHHcC
Confidence            679999999999999999998 89999999997 999999999999874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-14  Score=102.86  Aligned_cols=44  Identities=25%  Similarity=0.561  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc
Q 011938           40 PWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~   84 (474)
                      .||.|||++|+++|++||.++|..||+.+++ |++.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~-Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            5999999999999999999999999999997 9999999999986

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=103.62  Aligned_cols=50  Identities=30%  Similarity=0.450  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChHHHhcc--CCCCCHHHHHHHHHHHhhhH
Q 011938           90 KKGAFTQEEEQMIVELHAKMG-NKWARMAAH--LPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G-~kWs~IAk~--LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      ++++||+|||++|+++|++|| .+|..||+.  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            578999999999999999999 479999987  56999999999999988764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.8e-13  Score=96.35  Aligned_cols=43  Identities=21%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHH
Q 011938           93 AFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~  135 (474)
                      .||.|||++|+++|.+||. +|..||++|+|||+.|||+||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            5999999999999999995 699999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=100.13  Aligned_cols=53  Identities=15%  Similarity=0.358  Sum_probs=47.3

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCC---ChhHHhhhhCCccccccchhhhhh
Q 011938           30 TARGVILKKGPWTSAEDAILIDYVKKHGEG---NWNAVQKNSGLFRCGKSCRLRWAN   83 (474)
Q Consensus        30 ~~~~p~lkKg~WT~EED~~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCR~RW~n   83 (474)
                      ....+...+++||+|||++|+++|.+||.+   +|.+||+.|++ |+++||+.||+.
T Consensus         4 ~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~   59 (60)
T d2cqra1           4 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKL   59 (60)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHH
T ss_pred             ccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            345567788999999999999999999986   59999999997 999999999974

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.2e-12  Score=97.51  Aligned_cols=50  Identities=12%  Similarity=0.313  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHH
Q 011938           86 RPNLKKGAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWNTR  135 (474)
Q Consensus        86 ~p~lkkg~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~~~  135 (474)
                      .+...+++||+|||++|+++|.+||.    +|.+||+.|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999996    599999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.1e-13  Score=103.14  Aligned_cols=57  Identities=19%  Similarity=0.282  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHH
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE   97 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~E   97 (474)
                      .+||+|||++|+++|.+||. +|..||+.|++ |+..||+.||.+++++..+.+.+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            57999999999999999996 99999999997 99999999999999887777766543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.21  E-value=9.1e-12  Score=95.88  Aligned_cols=47  Identities=21%  Similarity=0.432  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938           92 GAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWNTRIKR  138 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~~~Lkk  138 (474)
                      .+||+|||++|++++++||.    +|.+||.+|+|||.+||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999996    499999999999999999999876553

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.7e-11  Score=101.68  Aligned_cols=71  Identities=13%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             cccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC---hHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938           72 RCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK---WARMAAHLPGRTDNEIKNYWNTRIKRRQRA  142 (474)
Q Consensus        72 Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k---Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~r~  142 (474)
                      .+..+..-++.+....+.+...||.|||++|++.++++|.+   |..||+.|+||+++|||+||+.+++...+.
T Consensus        14 ~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          14 ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            56667777888888888888899999999999999999987   999999999999999999999988765543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.13  E-value=3.7e-11  Score=97.29  Aligned_cols=47  Identities=23%  Similarity=0.498  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhH
Q 011938           93 AFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      +||.|||++|+++|.+||. +|..|++.    +++||+.|||+||+++|+..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            7999999999999999995 89999975    68999999999999999754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.10  E-value=1.8e-11  Score=94.14  Aligned_cols=44  Identities=14%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hhHHhhhhCCccccccchhhhhh
Q 011938           39 GPWTSAEDAILIDYVKKHGEGN---WNAVQKNSGLFRCGKSCRLRWAN   83 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~n---W~~IAk~l~~~Rt~kQCR~RW~n   83 (474)
                      .+||+|||++|+++|++||.++   |.+||+.|++ |++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            4899999999999999999864   9999999997 999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5e-11  Score=91.96  Aligned_cols=47  Identities=17%  Similarity=0.354  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      +..||+|||++|++++.+||.+|..||++|+|||..||++||....+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.7e-11  Score=93.00  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                      ....+||+||+++|++++.+||.+|..||+.|+|||..||++||....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.8e-10  Score=85.13  Aligned_cols=47  Identities=19%  Similarity=0.382  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      ..+||++||++|.+++.+||. +|..||+.|++ |+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            467999999999999999997 99999999997 999999999998654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-09  Score=84.99  Aligned_cols=49  Identities=12%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938           35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      .....+||+|||++|+++|.+||. +|..||+.+++ |+..||+.||....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTT-SCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            344568999999999999999997 99999999997 99999999998654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.3e-08  Score=84.12  Aligned_cols=51  Identities=14%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCC--ChhHHhhhhCCccccccchhhhhhc
Q 011938           33 GVILKKGPWTSAEDAILIDYVKKHGEG--NWNAVQKNSGLFRCGKSCRLRWANH   84 (474)
Q Consensus        33 ~p~lkKg~WT~EED~~L~~lV~kyG~~--nW~~IAk~l~~~Rt~kQCR~RW~n~   84 (474)
                      ....+...||.|||++|++.++++|..  .|..||+.|++ |++.|||.||+..
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            345667789999999999999999973  39999999987 9999999999763

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=4.4e-06  Score=62.44  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHhcc-CCCCCHHHHHHHHHH
Q 011938           92 GAFTQEEEQMIVELHAKMGNKWARMAAH-LPGRTDNEIKNYWNT  134 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G~kWs~IAk~-LpGRT~~QcKnRW~~  134 (474)
                      ..||+||-.++.+++.+||.+|..|++. +++||..||.++|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999975 699999999999975

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.2e-06  Score=63.29  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHh
Q 011938           92 GAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        92 g~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                      +.||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999996    4599999999 999999999997653

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.2e-06  Score=62.31  Aligned_cols=45  Identities=18%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChhHHhhhhCCccccccchhhhhhcc
Q 011938           39 GPWTSAEDAILIDYVKKHGEG---NWNAVQKNSGLFRCGKSCRLRWANHL   85 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCR~RW~n~L   85 (474)
                      +.||.+|+.+|.+++.+|..+   .|.+||..+|  |+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999754   6999999994  99999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.2e-05  Score=58.49  Aligned_cols=43  Identities=14%  Similarity=0.309  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhHHhhhh-CCccccccchhhhhhc
Q 011938           40 PWTSAEDAILIDYVKKHGEGNWNAVQKNS-GLFRCGKSCRLRWANH   84 (474)
Q Consensus        40 ~WT~EED~~L~~lV~kyG~~nW~~IAk~l-~~~Rt~kQCR~RW~n~   84 (474)
                      .||.||-+++.+++..||. +|..|++.+ ++ |+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~-Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            6999999999999999999 999999865 65 9999999988753

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00041  Score=52.05  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CC-hHHHhc-cCCCCCHHHHHHHHHHHhh
Q 011938           91 KGAFTQEEEQMIVELHAKMG--------NK-WARMAA-HLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G--------~k-Ws~IAk-~LpGRT~~QcKnRW~~~Lk  137 (474)
                      |.+||.|||+.|++.|+++.        ++ |.++++ .++.+|-...|+||.+.||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999873        23 999994 6799999999999988775

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00067  Score=47.99  Aligned_cols=45  Identities=22%  Similarity=0.433  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHhccC---CCCCHHHHHHHHHHH
Q 011938           91 KGAFTQEEEQMIVELHAKMGNKWARMAAHL---PGRTDNEIKNYWNTR  135 (474)
Q Consensus        91 kg~WT~EED~~LieLv~k~G~kWs~IAk~L---pGRT~~QcKnRW~~~  135 (474)
                      |..||+||-.-|...|++||+.|..|-=.+   +||+..++..+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999996333   899999999999765

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.00096  Score=50.74  Aligned_cols=50  Identities=10%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChH---HHhcc--CCCCCHHHHHHHHHHHhhhH
Q 011938           90 KKGAFTQEEEQMIVELHAKMGNKWA---RMAAH--LPGRTDNEIKNYWNTRIKRR  139 (474)
Q Consensus        90 kkg~WT~EED~~LieLv~k~G~kWs---~IAk~--LpGRT~~QcKnRW~~~Lkkk  139 (474)
                      .+-.||+||.+++++++.++|..|.   .|.+.  ++|+|..||+.+.+.+.-+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            4567999999999999999999874   66655  48999999999987764443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00061  Score=51.07  Aligned_cols=48  Identities=31%  Similarity=0.569  Sum_probs=40.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--ChhHHhh-hhCCccccccchhhhhhccC
Q 011938           38 KGPWTSAEDAILIDYVKKHGE------G--NWNAVQK-NSGLFRCGKSCRLRWANHLR   86 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~------~--nW~~IAk-~l~~~Rt~kQCR~RW~n~L~   86 (474)
                      +.+||.|||++|+++|.++..      |  =|+.+++ ..+. ++..+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~-HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc
Confidence            458999999999999999843      2  3999996 4554 999999999999885

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0033  Score=48.25  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938           38 KGPWTSAEDAILIDYVKKHG---EGNWNAVQKNSGLFRCGKSCRLRWANHLRPN   88 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG---~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~   88 (474)
                      .+.|+.+|=++|-.++....   .+-|..||..+|. |++..|...|+..+...
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCcccc
Confidence            45899999999999998664   4679999999998 99999999999877543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.77  E-value=0.0045  Score=46.89  Aligned_cols=49  Identities=8%  Similarity=0.034  Sum_probs=38.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCh--hHHhhhhCC-ccccccchhhhhhc
Q 011938           36 LKKGPWTSAEDAILIDYVKKHGEGNW--NAVQKNSGL-FRCGKSCRLRWANH   84 (474)
Q Consensus        36 lkKg~WT~EED~~L~~lV~kyG~~nW--~~IAk~l~~-~Rt~kQCR~RW~n~   84 (474)
                      ..+-.||+||.++++++|..+|...|  +.|...|+. +++..||+-|.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998545  688888754 46888888766554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.013  Score=44.94  Aligned_cols=49  Identities=16%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC----hHHHhccCCCCCHHHHHHHHHHHhh
Q 011938           89 LKKGAFTQEEEQMIVELHAKMGNK----WARMAAHLPGRTDNEIKNYWNTRIK  137 (474)
Q Consensus        89 lkkg~WT~EED~~LieLv~k~G~k----Ws~IAk~LpGRT~~QcKnRW~~~Lk  137 (474)
                      ...+.|+++|-++|-.++..+...    |..||..+..|++.+|..+|...++
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            345789999999999999988753    9999999999999999999987544

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.10  E-value=0.069  Score=37.45  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCC--ccccccchhhhhh
Q 011938           39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL--FRCGKSCRLRWAN   83 (474)
Q Consensus        39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~--~Rt~kQCR~RW~n   83 (474)
                      ..||+||-.-|...|+++|. .|+.|--.++.  +|++.....+|+.
T Consensus         2 knft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            47999999999999999998 99999877654  4777776666654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.23  E-value=0.19  Score=42.44  Aligned_cols=64  Identities=25%  Similarity=0.386  Sum_probs=47.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCC---hhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 011938           38 KGPWTSAEDAILIDYVKKHGEGN---WNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWA  114 (474)
Q Consensus        38 Kg~WT~EED~~L~~lV~kyG~~n---W~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs  114 (474)
                      +..+|.|||.-|+-.+.+||-++   |.+|-..+   |..-+-|.                                .|-
T Consensus        49 ~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~I---r~~p~FrF--------------------------------Dwf   93 (128)
T d1ofcx2          49 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI---RASPQFRF--------------------------------DWF   93 (128)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH---HHCGGGTT--------------------------------CHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHH---HhCcchhh--------------------------------hhH
Confidence            44699999999999999999988   88887655   22222222                                231


Q ss_pred             HHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938          115 RMAAHLPGRTDNEIKNYWNTRIKRRQR  141 (474)
Q Consensus       115 ~IAk~LpGRT~~QcKnRW~~~Lkkk~r  141 (474)
                           +..||+.+|..|.+++++--.|
T Consensus        94 -----~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          94 -----IKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             -----HHTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----hccCCHHHHHHHHHHHHHHHHH
Confidence                 5689999999999998886544

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.01  E-value=0.32  Score=34.96  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHh
Q 011938           93 AFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRI  136 (474)
Q Consensus        93 ~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~L  136 (474)
                      .|+..|=+.++.+..+||. +-..||..|.|+|..+|+.+.+..-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4999999999999999996 6999999999999999988665543