Citrus Sinensis ID: 011960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKPHSEISSDSD
cccEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccEEccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccc
ccEEEEEEEcccHcHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccEEEccEEEEEEccccccccHHcccccccccccccHcccccccEEEEEcccccccHHHHHHHHccccccccccccEEEcccccEccccccEEEEcccccccccccHccccccHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccHEEEEccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccc
MREIVTVQVGGFANFIGSHFWNFQDEllglasdpnndpvfrnqclnmDVLYrtgetqqgvltytprllsvgfqgslgsmssrgllynesspgpsdvvtwsgsvsthasaprkkNLFLQRLYEEEQESfsmingtssgksdsqreiqdkdislyelgglwmdpqefdnygigkdafsegfrgEEICERLRFFVeesdhiqgfqfvvddsggfSAVAADLLENIADEYANTPVLLFAVrspssqmnlrsRKQTIFRELHDTvsfsrlasfgklivpvglpflneskastllcienekpyhcsAVYAAALHsatlpyrmepvgptadsfdvfgavDINGFVQMLAGQARQNTVAILDaampapalngkqheqsllgnlqpltpellnspfvgssprgslevhsipMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLrnwgfaddelYDMGEMLSKMVStmkphseissdsd
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSvsthasaprkkNLFLQRLYEEEQESfsmingtssgksdsqreIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAvrspssqmnLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMvstmkphseissdsd
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQgslgsmssrgllYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKPHSEISSDSD
***IVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSL************************************************************************DISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVR************QTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAA*******************************************SIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMG*********************
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNN***FRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTW*************************QESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPS***********IFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP**********FGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN**QH**SLLGNLQPLTPELLNSP************HSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVST************
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVT**********APRKKNLFLQRLYEEEQE******************IQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVS*************
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP***TADSF**FGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMK**********
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MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPELLNSPFVGSSPRGSLEVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKPHSEISSDSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q2YDW2556 Protein misato homolog 1 yes no 0.639 0.544 0.318 5e-37
Q9BUK6570 Protein misato homolog 1 yes no 0.755 0.628 0.281 8e-36
Q5RF82570 Protein misato homolog 1 N/A no 0.740 0.615 0.289 2e-35
Q4R681569 Protein misato homolog 1 N/A no 0.740 0.616 0.286 1e-34
A5D9D4572 Protein misato homolog 1 yes no 0.755 0.625 0.281 4e-34
Q1L908591 Protein misato homolog 1 yes no 0.651 0.522 0.292 8e-31
Q7S2Y8540 Protein dml-1 OS=Neurospo N/A no 0.660 0.579 0.269 7e-26
O01939574 Protein misato OS=Drosoph yes no 0.641 0.529 0.274 7e-25
A1CNV1499 Protein dml1 OS=Aspergill N/A no 0.626 0.595 0.266 2e-22
A1D1R1505 Protein dml1 OS=Neosartor N/A no 0.628 0.590 0.239 2e-20
>sp|Q2YDW2|MSTO1_MOUSE Protein misato homolog 1 OS=Mus musculus GN=Msto1 PE=2 SV=1 Back     alignment and function desciption
 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 159/339 (46%), Gaps = 36/339 (10%)

Query: 2   REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVL 61
           RE++T+Q+G FA F+G+H+WN QD  LG  ++    P      L  DVLYRTG T  G  
Sbjct: 6   REVLTLQLGHFAGFVGAHWWNQQDAALGRMAEDEESPGE----LCPDVLYRTGRTLHGQE 61

Query: 62  TYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLY 121
           TYTPRL+ +  +GSL ++   G LY +        V W G +STH      KN  LQ L 
Sbjct: 62  TYTPRLILMDLKGSLNTLKEEGNLYRDRQL--EAAVAWQGKLSTHREDAHPKNPNLQGLL 119

Query: 122 EEEQESFS-------MINGTSSGKSDSQR--------EIQDKDISLYELGGLWMDPQEFD 166
             E    S       +I    +GK +S +         +  + I +        +    +
Sbjct: 120 SAEGVRSSDGAWRAKLIQNIQNGKENSIKVWSDFLRVHLHPRSICVIHKYHHDGETGRLE 179

Query: 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEY 226
            +G G+    E    EE+ +RL F+VEE D++QGFQ + D   GFS V A   E + DEY
Sbjct: 180 AFGQGESVLKEPRYLEELEDRLHFYVEECDYLQGFQLLCDLHDGFSGVGAKTAELLQDEY 239

Query: 227 ANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGL--------- 277
           A   VL + +       +L   ++ I+R L+       L  +   + P+ L         
Sbjct: 240 AGRGVLTWGLL--PGPYSLGEPQKNIYRLLNTAFGLVHLTGYSSFVCPLSLGGNLGLRPK 297

Query: 278 PFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM 316
           P +N       L  +   P+HCSA+ A AL + T+PYR+
Sbjct: 298 PPVNFPS----LHYDATLPFHCSAILATALDTVTVPYRL 332
Involved in the regulation of mitochondrial distribution and morphology.
Mus musculus (taxid: 10090)
>sp|Q9BUK6|MSTO1_HUMAN Protein misato homolog 1 OS=Homo sapiens GN=MSTO1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RF82|MSTO1_PONPY Protein misato homolog 1 OS=Pongo pygmaeus GN=MSTO1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R681|MSTO1_MACFA Protein misato homolog 1 OS=Macaca fascicularis GN=MSTO1 PE=2 SV=2 Back     alignment and function description
>sp|A5D9D4|MSTO1_BOVIN Protein misato homolog 1 OS=Bos taurus GN=MSTO1 PE=2 SV=2 Back     alignment and function description
>sp|Q1L908|MSTO1_DANRE Protein misato homolog 1 OS=Danio rerio GN=msto1 PE=2 SV=1 Back     alignment and function description
>sp|Q7S2Y8|DML1_NEUCR Protein dml-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dml-1 PE=3 SV=2 Back     alignment and function description
>sp|O01939|MST_DROME Protein misato OS=Drosophila melanogaster GN=mst PE=2 SV=1 Back     alignment and function description
>sp|A1CNV1|DML1_ASPCL Protein dml1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dml1 PE=3 SV=1 Back     alignment and function description
>sp|A1D1R1|DML1_NEOFI Protein dml1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dml1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
359480437 575 PREDICTED: protein misato homolog 1-like 0.805 0.664 0.695 1e-163
224061153574 predicted protein [Populus trichocarpa] 0.803 0.663 0.679 1e-157
255562643574 conserved hypothetical protein [Ricinus 0.803 0.663 0.672 1e-152
449448342568 PREDICTED: protein misato homolog 1-like 0.793 0.661 0.656 1e-147
356537686572 PREDICTED: protein misato homolog 1-like 0.803 0.666 0.650 1e-146
356496864572 PREDICTED: protein misato homolog 1-like 0.803 0.666 0.648 1e-146
357483023566 Misato-like protein [Medicago truncatula 0.784 0.657 0.614 1e-137
110739205562 tubulin-like protein [Arabidopsis thalia 0.774 0.653 0.619 1e-132
15235474562 uncharacterized protein [Arabidopsis tha 0.774 0.653 0.619 1e-132
297798192562 hypothetical protein ARALYDRAFT_912663 [ 0.774 0.653 0.619 1e-132
>gi|359480437|ref|XP_002263195.2| PREDICTED: protein misato homolog 1-like [Vitis vinifera] gi|302144155|emb|CBI23282.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/404 (69%), Positives = 320/404 (79%), Gaps = 22/404 (5%)

Query: 1   MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGV 60
           MREIVT+QVGGFANFIGSHFWNFQDELLGLA DPN DP+F+NQ L+MDVLYRTGET QG+
Sbjct: 1   MREIVTIQVGGFANFIGSHFWNFQDELLGLAGDPNGDPIFKNQHLDMDVLYRTGETLQGI 60

Query: 61  LTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRL 120
            TYTPRL+SV FQGSLGSMSS G LY+ + P PS VVTW G+VSTH S P KKNLFLQ L
Sbjct: 61  ATYTPRLVSVNFQGSLGSMSSHGTLYDHNPPVPSHVVTWPGNVSTHLSEPHKKNLFLQSL 120

Query: 121 YEEEQESFSMINGTSSGKSDSQREIQDKDI----------------------SLYELGGL 158
           YEEEQE+ + ++G +SGK+D + EIQDKDI                      SLYEL GL
Sbjct: 121 YEEEQENLAPMDGINSGKNDCESEIQDKDIVESLENGVQFWTDFSKVHYHPQSLYELNGL 180

Query: 159 WMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADL 218
           WMD Q+F+NYGIG D FSEG RGEE+ ERLRFFVEE DHIQG QFVVDDSGGFS+VAAD 
Sbjct: 181 WMDAQDFNNYGIGMDVFSEGLRGEEMNERLRFFVEECDHIQGIQFVVDDSGGFSSVAADF 240

Query: 219 LENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLP 278
           LENIADEY NTP+LL+ VR P S MN RSR+QT+  +LHD +SFSRL+SF KLIVP+GLP
Sbjct: 241 LENIADEYTNTPILLYTVRGPESYMNRRSRRQTMASDLHDAISFSRLSSFCKLIVPIGLP 300

Query: 279 FLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFV 338
            L  SK S+ LC+E+EKPYHCSAVYAAALHS +LP+RME +GP  DS  V GAVD+ G +
Sbjct: 301 LLGRSKVSSYLCLEDEKPYHCSAVYAAALHSISLPFRMETLGPAMDSCYVSGAVDVYGLI 360

Query: 339 QMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPEL 382
           QMLAGQARQN VA LDA MPAP+L GKQ EQSLLG+L P TPE+
Sbjct: 361 QMLAGQARQNIVATLDAVMPAPSLTGKQVEQSLLGSLHPFTPEI 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061153|ref|XP_002300359.1| predicted protein [Populus trichocarpa] gi|222847617|gb|EEE85164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562643|ref|XP_002522327.1| conserved hypothetical protein [Ricinus communis] gi|223538405|gb|EEF40011.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449448342|ref|XP_004141925.1| PREDICTED: protein misato homolog 1-like [Cucumis sativus] gi|449528485|ref|XP_004171235.1| PREDICTED: protein misato homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356537686|ref|XP_003537356.1| PREDICTED: protein misato homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356496864|ref|XP_003517285.1| PREDICTED: protein misato homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357483023|ref|XP_003611798.1| Misato-like protein [Medicago truncatula] gi|355513133|gb|AES94756.1| Misato-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|110739205|dbj|BAF01517.1| tubulin-like protein [Arabidopsis thaliana] gi|222423876|dbj|BAH19902.1| AT4G37190 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15235474|ref|NP_195436.1| uncharacterized protein [Arabidopsis thaliana] gi|4006861|emb|CAB16779.1| tubulin-like protein [Arabidopsis thaliana] gi|7270668|emb|CAB80385.1| tubulin-like protein [Arabidopsis thaliana] gi|71143064|gb|AAZ23923.1| At4g37190 [Arabidopsis thaliana] gi|194306666|gb|ACF41946.1| At4g37190 [Arabidopsis thaliana] gi|332661364|gb|AEE86764.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798192|ref|XP_002866980.1| hypothetical protein ARALYDRAFT_912663 [Arabidopsis lyrata subsp. lyrata] gi|297312816|gb|EFH43239.1| hypothetical protein ARALYDRAFT_912663 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2115035562 AT4G37190 [Arabidopsis thalian 0.795 0.670 0.610 7.7e-146
MGI|MGI:2385175556 Msto1 "misato homolog 1 (Droso 0.647 0.552 0.310 5.5e-36
RGD|1306110553 Msto1 "misato homolog 1 (Droso 0.753 0.645 0.292 2.5e-35
UNIPROTKB|Q9BUK6570 MSTO1 "Protein misato homolog 0.246 0.205 0.365 1.3e-29
UNIPROTKB|Q5RF82570 MSTO1 "Protein misato homolog 0.246 0.205 0.365 3.6e-29
UNIPROTKB|Q4R681569 MSTO1 "Protein misato homolog 0.246 0.205 0.357 2.6e-28
UNIPROTKB|A5D9D4572 MSTO1 "Protein misato homolog 0.417 0.346 0.286 2.2e-27
ZFIN|ZDB-GENE-030131-6238 591 msto1 "misato homolog 1 (Droso 0.234 0.187 0.386 9.1e-27
UNIPROTKB|E2RSB9574 MSTO1 "Uncharacterized protein 0.339 0.280 0.302 4.5e-26
UNIPROTKB|J9P0H7515 MSTO1 "Uncharacterized protein 0.339 0.312 0.302 5.9e-26
TAIR|locus:2115035 AT4G37190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1159 (413.0 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
 Identities = 241/395 (61%), Positives = 284/395 (71%)

Query:     1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGV 60
             MREIVT+QVG FANF+GSHFWNFQDELLGLASDP +DP+FRN  L+MDVLYR+GETQQGV
Sbjct:     1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60

Query:    61 LTYTPRLLSVGFQXXXXXXXXXXXXYNESSPGPSDV-VTWSGSVSTHASAPRKKNLFLQR 119
              TYTPRL+SV  +            YNE S   SD   TW G V T  S PRK+NLFLQ 
Sbjct:    61 ATYTPRLVSVNLKGALGTMSSRGTLYNEGSSSRSDSSATWFGDVDTQRSEPRKRNLFLQS 120

Query:   120 LYEEE----QESFSMINGTSS-GKSDSQREIQ---DKDI----SLYELGGLWMDPQEFDN 167
             LYEEE    +E    I      G  D + E      K      SLYEL GLWMD Q F+N
Sbjct:   121 LYEEEHVVGKEKAKEIEDKDIVGCLDEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNN 180

Query:   168 YGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYA 227
             YGIGKD FSE  RGEEIC+RLRFFVEE DHIQG +F+VDDSGGFSAVAAD LEN+ADEY 
Sbjct:   181 YGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVDDSGGFSAVAADFLENMADEYT 240

Query:   228 NTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKAST 287
             N PVLL++VR+P SQM   S K+T+  +LHD +SFSRL+SF KL  P+GLP L  SKAS 
Sbjct:   241 NVPVLLYSVRTPMSQM---SSKKTVSNKLHDAISFSRLSSFCKLFTPIGLPSLTGSKASK 297

Query:   288 LLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQ 347
              L + +EKPY  SAVYAAALHS+T+P+RM+P   ++DS +V  ++D+N  VQ+L G+ RQ
Sbjct:   298 FLNLGDEKPYRSSAVYAAALHSSTIPFRMQPT--SSDSSEVSNSMDVNTLVQLLTGRGRQ 355

Query:   348 NTVAILDAAMPAPALNGKQHEQSLLGNLQPLTPEL 382
             N VAILD+AMPAP L GKQ E +LL +LQ LTPE+
Sbjct:   356 NIVAILDSAMPAPTLAGKQLENTLLTSLQALTPEV 390
GO:0005739 "mitochondrion" evidence=ISM
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
MGI|MGI:2385175 Msto1 "misato homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306110 Msto1 "misato homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BUK6 MSTO1 "Protein misato homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RF82 MSTO1 "Protein misato homolog 1" [Pongo pygmaeus (taxid:9600)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R681 MSTO1 "Protein misato homolog 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9D4 MSTO1 "Protein misato homolog 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6238 msto1 "misato homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSB9 MSTO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0H7 MSTO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I001150
hypothetical protein (574 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
cd06060493 cd06060, misato, Human Misato shows similarity wit 3e-63
pfam10644103 pfam10644, Misat_Myo_SegII, Misato Segment II myos 3e-31
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 3e-09
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 7e-06
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information 
 Score =  212 bits (542), Expect = 3e-63
 Identities = 103/320 (32%), Positives = 151/320 (47%), Gaps = 53/320 (16%)

Query: 2   REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVL 61
           RE++T+Q+G +ANF+G+H+WN Q+       DP++        L+ DVLYR G T+QG +
Sbjct: 1   REVLTLQLGHYANFVGTHWWNLQEA--NFGYDPDSPASE----LDHDVLYREGRTRQGQV 54

Query: 62  TYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLY 121
           TYTPRLL +  +G+LG +   G L   +      V  WS  +      PR          
Sbjct: 55  TYTPRLLLLDLKGTLGHLPEEGSLKVYNLEA--SVNVWSDYLYARLH-PR---------- 101

Query: 122 EEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRG 181
                S ++IN  +                           Q F+ +G G+  + +    
Sbjct: 102 -----SINVINQYNHDG----------------------TSQPFEVFGQGESLWQDESFQ 134

Query: 182 EEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSS 241
           EE  +RLRF+VEE D++QGFQ + D   GFS V A  LE++ DEY     LLF    P  
Sbjct: 135 EEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEY-GKASLLFPGLPPVI 193

Query: 242 QMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGL-----PFLNESKASTLLCIENEKP 296
             +  S K +I R L+  +  ++L+    L VP+ L           +    L  + E P
Sbjct: 194 PPDASSDKNSI-RVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYDAELP 252

Query: 297 YHCSAVYAAALHSATLPYRM 316
           YH SA+ A AL + TLPYR+
Sbjct: 253 YHTSALLATALDTLTLPYRL 272

It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown. Length = 493
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
PF14881180 Tubulin_3: Tubulin domain 100.0
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.92
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.87
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.67
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.58
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.54
PRK13018378 cell division protein FtsZ; Provisional 99.45
PRK09330384 cell division protein FtsZ; Validated 99.28
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 95.05
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 94.45
TIGR00824116 EIIA-man PTS system, mannose/fructose/sorbose fami 80.33
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-93  Score=689.29  Aligned_cols=375  Identities=21%  Similarity=0.309  Sum_probs=332.8

Q ss_pred             CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960            1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM   79 (474)
Q Consensus         1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl   79 (474)
                      ||||||||+||||||||+.||+++|.|||+.++|...........+.+|||+  |+.+|  +|+||+|+|||||+ ++.+
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~--e~~~~--k~vPRaI~vDLEP~vid~v   76 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFY--EASDG--KFVPRAILVDLEPGVIDQV   76 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceee--ecCCC--ccccceEEEecCcchHhhh
Confidence            9999999999999999999999999999999999854433345578999999  88888  99999999999999 5655


Q ss_pred             cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCC
Q 011960           80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLW  159 (474)
Q Consensus        80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~  159 (474)
                                                 +++|      +++||+|+|    ++.|++++|||||+                
T Consensus        77 ---------------------------~~g~------y~~lf~Pen----~i~gkegAgNnwA~----------------  103 (443)
T COG5023          77 ---------------------------RNGP------YGSLFHPEN----IIFGKEGAGNNWAR----------------  103 (443)
T ss_pred             ---------------------------ccCc------cccccChhh----eeeccccccccccc----------------
Confidence                                       3577      899999999    99999999999999                


Q ss_pred             CCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960          160 MDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS  238 (474)
Q Consensus       160 ~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p  238 (474)
                            |+|+.|+++      .|+++|+|||++|.||.|||||++||++||| |||||.|||.|++|||||.+.+|+|+|
T Consensus       104 ------GhYtvG~e~------~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P  171 (443)
T COG5023         104 ------GHYTVGKEI------IDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFP  171 (443)
T ss_pred             ------cccchhHHH------HHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEecc
Confidence                  999999999      9999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCC
Q 011960          239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP  318 (474)
Q Consensus       239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~  318 (474)
                      .+      +.+++++||||++|++++|.++||+++++||++|++ +|.+.|++..|+|.|+|+|||++|+++|.++||+ 
T Consensus       172 ~p------~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~d-i~~~~L~i~~P~y~~lN~LIs~VmSsvTtslRfp-  243 (443)
T COG5023         172 AP------KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYD-ICRRNLRIQNPSYDDLNQLISTVMSSVTTSLRFP-  243 (443)
T ss_pred             CC------ccCcceecccHHHHHHHHHHhcCCceEEechHHHHH-HHHHhcCCCCCChHHHHHHHHHHHHhhhheeecC-
Confidence            87      689999999999999999999999999999999999 9999999999999999999999999999999999 


Q ss_pred             CCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchhhH----HHHHhcc----------CCCCCCCcC
Q 011960          319 VGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHE----QSLLGNL----------QPLTPELLN  384 (474)
Q Consensus       319 ~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~~~----~~l~~~~----------~~~tp~~~~  384 (474)
                       |.        .+++|++|..+|+|+||.||  .+..+.|+.+...+...    ..+++++          .|+.+....
T Consensus       244 -G~--------ln~dl~~~~~nLVP~PrlHF--~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~  312 (443)
T COG5023         244 -GY--------LNVDLRSIQTNLVPYPRLHF--PLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMA  312 (443)
T ss_pred             -cc--------ccchHHHHHhcCCCCCcccc--cccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeee
Confidence             66        78999999999999999999  66778888765322222    2233222          232222111


Q ss_pred             --------------------------CCcccCCCCCc-cceeccCc---------eeeeecchhhHHHHHHHHHHHhchh
Q 011960          385 --------------------------SPFVGSSPRGS-LEVHSIPM---------AVRLRSSSAILPFLENRLGNLRRYG  428 (474)
Q Consensus       385 --------------------------~~~~~~~~~~~-~~~~sip~---------~~~L~n~t~i~~~~~~~~~~f~~l~  428 (474)
                                                ..|+.|.|.+. .++|++|+         .++|+|+|+|++.|+|+..+|++|+
T Consensus       313 ~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf  392 (443)
T COG5023         313 VCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMF  392 (443)
T ss_pred             hhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHH
Confidence                                      25666666665 78898876         4679999999999999999999998


Q ss_pred             hhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960          429 LQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP  465 (474)
Q Consensus       429 ~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~  465 (474)
                      .||+||  |||+++|||++||.|++|.+++|.++|++
T Consensus       393 ~krAFl--hwY~~egmee~EFsEare~~~~L~~eY~~  427 (443)
T COG5023         393 KKRAFL--HWYVGEGMEEGEFSEAREDVADLEEEYEA  427 (443)
T ss_pred             HhhHHH--HHHhhccCcccchhhHHHHHHHHHHHHHH
Confidence            888877  99999999999999999999999999986

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 2e-07
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 3e-04
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 38/249 (15%), Positives = 69/249 (27%), Gaps = 79/249 (31%)

Query: 1   MREIVTVQVGGFANFIGSHFWNFQDELLGL--ASDPNNDPVFRNQCL---NMDVLYRTGE 55
           +REI+++ VG   N I   FW     L                +      NM+V +   +
Sbjct: 1   VREILSIHVGQCGNQIADSFW----RLALREHGLTEAGTLKEGSNAAANSNMEVFFH--K 54

Query: 56  TQQGVLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNL 115
            + G   Y PR + V  +                 PG    +         +    + ++
Sbjct: 55  VRDG--KYVPRAVLVDLE-----------------PGVIARIEGG----DMSQLFDESSI 91

Query: 116 FLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAF 175
                                    +                 W           G+   
Sbjct: 92  V-------------------RKIPGA--------------ANNWAR----GYNVEGEKVI 114

Query: 176 SEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLF 234
                 ++I   +   VE++  +QGF       GG  S + + +LE +   Y    +  F
Sbjct: 115 ------DQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTF 168

Query: 235 AVRSPSSQM 243
           +V  PS  +
Sbjct: 169 SV-VPSPLI 176
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.93
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.93
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.93
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.92
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.92
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.92
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.91
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.86
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.81
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.8
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 98.31
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 93.09
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 89.19
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=3.3e-83  Score=660.77  Aligned_cols=375  Identities=18%  Similarity=0.253  Sum_probs=321.5

Q ss_pred             CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccc--cccccccccccccccCCCceeeeeeeeeeccccc-cc
Q 011960            1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LG   77 (474)
Q Consensus         1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~--~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~   77 (474)
                      |||||+||+||||||||..||++++.||+++++|....+..  ..+...++||+  |+.+|  +|+||||+|||||+ ++
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~--e~~~g--k~vPRavlvDlEp~vid   76 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFS--ETGAG--KHVPRAVFVDLEPTVID   76 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEE--ECTTS--CEEESEEEEESSSHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcc--cCCCC--ccccceeeecCCcchhh
Confidence            99999999999999999999999999999999987644321  13457899999  67777  99999999999999 66


Q ss_pred             cccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCC
Q 011960           78 SMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGG  157 (474)
Q Consensus        78 sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~  157 (474)
                      +++                           +++      +++||++++    ++.|++++|||||+              
T Consensus        77 ~v~---------------------------~g~------~~~lf~p~~----~i~gk~gAgNNwA~--------------  105 (451)
T 3ryc_A           77 EVR---------------------------TGT------YRQLFHPEQ----LITGKEDAANNYAR--------------  105 (451)
T ss_dssp             HHH---------------------------HST------TTTTSCGGG----EEECSSCCTTCHHH--------------
T ss_pred             eee---------------------------ecc------cccccCHHH----eeeccccccCCCCe--------------
Confidence            664                           466      788999999    99999999999999              


Q ss_pred             CCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeee
Q 011960          158 LWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAV  236 (474)
Q Consensus       158 ~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v  236 (474)
                              |+|+.|+++      .|+++|+||+++|+||+||||+++||++||| ||+|+.++|.|+|||||+++++|+|
T Consensus       106 --------G~yt~G~e~------~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~ey~kk~~~~~~v  171 (451)
T 3ryc_A          106 --------GHYTIGKEI------IDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSI  171 (451)
T ss_dssp             --------HHHTSHHHH------HHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             --------eecccchHh------HHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHhcCcceEEEEEE
Confidence                    999999998      8999999999999999999999999999999 9999999999999999999999999


Q ss_pred             cCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960          237 RSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM  316 (474)
Q Consensus       237 ~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~  316 (474)
                      +|++      ..++.+++|||++|++++|.+++|++++++|++|++ +|.+.+++..++|.++|.|||++|+++|.++||
T Consensus       172 ~P~~------~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~-ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slRf  244 (451)
T 3ryc_A          172 YPAP------QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD-ICRRNLDIERPTYTNLNRLISQIVSSITASLRF  244 (451)
T ss_dssp             ECCT------TTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHH-HHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCC------CcccccceehHHHHHHHHHHhcccceeEeccHHHHH-HHHHhccCCCCCchhhHHHHHhccccccccccc
Confidence            9987      567899999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCch----hhHHHHHhcc-------CCCCCCCcC-
Q 011960          317 EPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGK----QHEQSLLGNL-------QPLTPELLN-  384 (474)
Q Consensus       317 ~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~----~~~~~l~~~~-------~~~tp~~~~-  384 (474)
                      +  |.        .|+||.+|..+|+|+||.||  .++.+.|+.+....    -....+.+++       ....|.... 
T Consensus       245 ~--G~--------lN~Dl~~l~tnLVP~PrlHF--~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky  312 (451)
T 3ryc_A          245 D--GA--------LNVDLTEFQTNLVPYPRIHF--PLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY  312 (451)
T ss_dssp             T--CS--------SSCSHHHHHHHHCSSSSCCC--CEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCE
T ss_pred             C--cc--------cccCHHHHhhccCCCCceee--eccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCch
Confidence            8  65        78999999999999999999  34445555433211    1122333221       111111111 


Q ss_pred             ----------------------------CCcccCCCCCc-cceeccCc--------------eeeeecchhhHHHHHHHH
Q 011960          385 ----------------------------SPFVGSSPRGS-LEVHSIPM--------------AVRLRSSSAILPFLENRL  421 (474)
Q Consensus       385 ----------------------------~~~~~~~~~~~-~~~~sip~--------------~~~L~n~t~i~~~~~~~~  421 (474)
                                                  ..|..|.|.+. .+++.+|+              +++|+|+|+|+++|+++.
T Consensus       313 ~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~  392 (451)
T 3ryc_A          313 MACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD  392 (451)
T ss_dssp             EEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHH
T ss_pred             heehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHH
Confidence                                        15667777765 67777765              357999999999999999


Q ss_pred             HHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960          422 GNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP  465 (474)
Q Consensus       422 ~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~  465 (474)
                      ++|++|+.||+|+  |||+++|||++||.||+|+|++|+++|++
T Consensus       393 ~kFd~m~~krAFv--HwY~~eGmee~eF~EA~e~l~~L~~eY~~  434 (451)
T 3ryc_A          393 HKFDLMYAKRAFV--HWYVGEGMEEGEFSEAREDMAALEKDYEE  434 (451)
T ss_dssp             HHHHHHHTTTTTT--HHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcceeH--hhhcCCccchhhHHHHHHHHHHHHHHHHH
Confidence            9999998888766  99999999999999999999999999985
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-06
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 3e-04
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 0.002
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 52/245 (21%), Positives = 78/245 (31%), Gaps = 72/245 (29%)

Query: 1   MREIVTVQVGGFANFIGSHFWN-FQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQG 59
           MREIV +Q G   N IG+ FW    DE  G+    +       Q   ++V Y      + 
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDE-HGIDPTGSYHGDSDLQLERINVYYNEAAGNK- 58

Query: 60  VLTYTPRLLSVGFQGSLGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQR 119
              Y PR + V                 +  PG  D V             R  N     
Sbjct: 59  ---YVPRAILV-----------------DLEPGTMDSVRS----GPFGQIFRPDNFV--- 91

Query: 120 LYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGF 179
                            G+S +              G  W       +Y  G +      
Sbjct: 92  ----------------FGQSGA--------------GNNWA----KGHYTEGAELV---- 113

Query: 180 RGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS 238
             + + + +R   E  D +QGFQ      GG  S +   L+  I +EY +  +  F+V  
Sbjct: 114 --DSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVV- 170

Query: 239 PSSQM 243
           PS ++
Sbjct: 171 PSPKV 175
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.8
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.79
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.79
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 97.64
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 97.53
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 97.43
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 97.4
d1pdoa_129 IIA domain of mannose transporter, IIA-Man {Escher 85.65
d3beda1132 PTS system, IIA subunit {Enterococcus faecalis [Ta 82.07
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.1e-63  Score=472.63  Aligned_cols=241  Identities=22%  Similarity=0.337  Sum_probs=220.9

Q ss_pred             CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960            1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM   79 (474)
Q Consensus         1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl   79 (474)
                      ||||||||+||||||||..||++++.||++++++...........+.++||+  ++..+  +|+||+|+||+||+ ++.+
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~--e~~~~--~~~pRav~iD~Ep~vi~~i   76 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYN--EAAGN--KYVPRAILVDLEPGTMDSV   76 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSS--TTTTS--TTCCCCEECCSSSHHHHHH
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccc--cCCCC--ccccceeEecCCcchhhhh
Confidence            9999999999999999999999999999999988764433334557889998  56666  99999999999999 6766


Q ss_pred             cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCC
Q 011960           80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLW  159 (474)
Q Consensus        80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~  159 (474)
                      ++                           ++      .+.+|++++    ++.+++++|||||+                
T Consensus        77 ~~---------------------------~~------~~~~f~~~~----~i~~~~gagNNwA~----------------  103 (243)
T d1tubb1          77 RS---------------------------GP------FGQIFRPDN----FVFGQSGAGNNWAK----------------  103 (243)
T ss_dssp             SS---------------------------SS------SCCCCSSSC----CCCTTCCCCSSTHH----------------
T ss_pred             cc---------------------------Cc------cccccCccc----eEEcccCcccceee----------------
Confidence            42                           33      456788888    99999999999998                


Q ss_pred             CCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960          160 MDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS  238 (474)
Q Consensus       160 ~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p  238 (474)
                            |+|..|.++      .|.++|+|||++|+||+||||+++||++||| ||+||+++|.|+|+||++.+++++|+|
T Consensus       104 ------Gy~~~G~~~------~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp~~~~~~~~V~P  171 (243)
T d1tubb1         104 ------GHYTEGAEL------VDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVP  171 (243)
T ss_dssp             ------HHTSHHHHH------HHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEECCCCC
T ss_pred             ------eeeccCHHH------HHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcccceEEEEeecC
Confidence                  899999988      9999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCC
Q 011960          239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRME  317 (474)
Q Consensus       239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~  317 (474)
                      +.      ..++++++|||++|+|++|.++||++++++|++|++ +|.+.++++.+++.++|++||++|+++|+|+|||
T Consensus       172 ~~------~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~-i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~RFP  243 (243)
T d1tubb1         172 SP------KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD-ICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP  243 (243)
T ss_dssp             CT------TCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHH-HTTTTSCCSSCCHHHHHHHHHHHHHHHHTBTTBS
T ss_pred             Cc------ccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHhhhhcccCC
Confidence            86      578999999999999999999999999999999998 8999999999999999999999999999999996
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure