Citrus Sinensis ID: 011961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
Protein Sequence
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAPGIGYSISESSDDGDLTTSRSFINGN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccccEEEcccccEEEEEEEcccccEEcccccccccEEEEEEEcccccccccccccHHHHHccccccccccccccccccEEEccccEEEccccEEEccccccccccEEEEEEEEccccccccEEEEEEccEEEEEccccccccccccccccccEEEcccccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEccEEEEEEcccccEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEcccccEEEcccccccEEEEEEEEcccccccccccccHHHHHHccEccccccccEEEEEEEEEEEccEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEcccEEEEEccEEEEEEEEEccEEEcHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maakrflngsdpeeppekrtrtrpsfaSVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQrgvskynpcrsltrssslriqalepsslklifsqklslpiftgskitdvennplqIVVVDtrsngliapaslpqpikIELVvldgdfppgdrdhwtpeefesnivkertgkrplltgdvnvtardgvapigdieftdnsswirSRKFRIGAkvargsyqgVRICEAITDAFVVkdhrgelykkhhppmleDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRlrkilgpgmsEKMWEVTMQHARKCvmgnklyifrghnciILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALltqgdlvdqypnhnqsmikpfqqngsasdkslDVGFLVSsstnntqfgsndwQIQSAYissapgigysisessddgdlttsrsfingn
Flexible Loop (DISEMBL)
maakrflngsdpeeppekrtrtrpSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEvqrgvskynpcrsltrssSLRIQALEPSSLKLIFSQKLSLPIFTgskitdvennPLQIVVVDTRSNGLiapaslpqpiKIELVVLDGDFppgdrdhwtpeefesnivkertgkrplltgdvnvtardgvapigdieftdnsswirsRKFRIgakvargsyqgvriCEAITDAFVVKDHRgelykkhhppmledEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQtyltrdltklnrtyIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLDVGFLVSSSTNntqfgsndWQIQSAYISSAPGIGYSIsessddgdlttsrsfingn
Low Complexity Region (SEG)
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAPGIGYSISESSDDGDLTTSRSFINGN
Disordered region (IsUnstruct)
**************************ASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRS*******RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPG**DHWT*******IV*****KRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQY*************************FL***********SNDWQIQSAYISS***************************
Disordered Region (DISOPRED)
****************************VIGEAVMVNSFQNF**A***LLRRVVNEEVQRGVS***********************LKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMA*****************************************************************************************
Disordered Region (DISEMBL)
***********************PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAPGIGYSISESSDDGDLTTSRSFINGN
Disordered Region (DISPRO)
*********************TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNP****************PSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVD********************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAPGIGYSISESSDDGDLTTSRSFINGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
297734237	469	unnamed protein product [Vitis vinifera]	0.976	0.987	0.602	1e-159
225455998	487	PREDICTED: uncharacterized protein LOC10	0.974	0.948	0.581	1e-156
357521187	474	hypothetical protein MTR_8g104510 [Medic	0.964	0.964	0.602	1e-153
224121274	435	predicted protein [Populus trichocarpa]	0.858	0.935	0.660	1e-152
357521181	487	hypothetical protein MTR_8g104490 [Medic	0.972	0.946	0.590	1e-149
225455994	470	PREDICTED: uncharacterized protein LOC10	0.974	0.982	0.564	1e-148
356513070	480	PREDICTED: uncharacterized protein LOC10	0.966	0.954	0.563	1e-147
356522779	488	PREDICTED: uncharacterized protein LOC10	0.970	0.942	0.564	1e-145
356529562	489	PREDICTED: uncharacterized protein LOC10	0.970	0.940	0.569	1e-145
225455996	469	PREDICTED: uncharacterized protein LOC10	0.968	0.978	0.552	1e-144

>gi|297734237|emb|CBI15484.3| unnamed protein product [Vitis vinifera]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/480 (60%), Positives = 358/480 (74%), Gaps = 17/480 (3%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEV 58
           MAAKR LN  GSDP++P EKRTRTRP F SVIGE +M NSFQN  +ALEP+LRRVVNEEV
Sbjct: 1   MAAKRLLNDFGSDPDQPTEKRTRTRPFFTSVIGEVLMGNSFQNICTALEPMLRRVVNEEV 60

Query: 59  QRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVV 118
           +RG+   + C + TRS SLRIQALE S+L+LIF+++LSLPIFTG+KI   EN+PLQ+ +V
Sbjct: 61  ERGIR--SSC-TFTRSPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIV 117

Query: 119 DTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDV 178
           +T  + ++ P +LP  IK+E+VVLDGDFP GD + W+ +EFE NIV+ERTGKRPLL GDV
Sbjct: 118 ETSGDQMV-PTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDV 176

Query: 179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGE 238
            VT RDG+A IGDIEFTDNSSWIRSRKFR+GA+V  GS   V I EAIT+AF VKDHRGE
Sbjct: 177 IVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGE 236

Query: 239 LYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGM 298
           LYKKHHPPML DEVWRLEKIGKDGAFHKKL++  I TVQD LKLSIV+PQ+LR ILGPGM
Sbjct: 237 LYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGM 296

Query: 299 SEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRT 358
           SEKMWEV ++HAR C +G  LYI RG+N  + LN ICQ+V   IN Q Y  ++L+ L+RT
Sbjct: 297 SEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLDRT 356

Query: 359 YIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIK-PFQQNGS-ASDK 416
           Y+E  V QAY NW  LE  +G LNE ALLT+G+L +Q+PN  ++M + P Q +G   +DK
Sbjct: 357 YVEKFVIQAYSNWNSLEEVDGSLNETALLTRGELGEQHPNLQETMARAPLQPHGCYLTDK 416

Query: 417 SLDVGFLVSSSTNNTQFGSNDWQIQSAYISSA--PGIGYSISESSDDGDLTTSRSFINGN 474
           S       S    N   GS++WQ+ +AY  +    G+ Y ++ESS   ++T      NG+
Sbjct: 417 S-------SMEVGNADVGSSNWQMNAAYQGTPVDTGVRYYLTESSSGCNITPPSRTFNGS 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455998|ref|XP_002276900.1| PREDICTED: uncharacterized protein LOC100259493 [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/499 (58%), Positives = 361/499 (72%), Gaps = 37/499 (7%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTRPSFAS------------------VIGEAVMVNSFQ 40
           MAAKR LN  GSDP++P EKRTRTRP F S                  VIGE +M NSFQ
Sbjct: 1   MAAKRLLNDFGSDPDQPTEKRTRTRPFFTSNVYLNKISYLAMVLSHDSVIGEVLMGNSFQ 60

Query: 41  NFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIF 100
           N  +ALEP+LRRVVNEEV+RG+   + C + TRS SLRIQALE S+L+LIF+++LSLPIF
Sbjct: 61  NICTALEPMLRRVVNEEVERGIR--SSC-TFTRSPSLRIQALEASNLQLIFTKRLSLPIF 117

Query: 101 TGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFE 160
           TG+KI   EN+PLQ+ +V+T  + ++ P +LP  IK+E+VVLDGDFP GD + W+ +EFE
Sbjct: 118 TGTKIGYAENSPLQLHIVETSGDQMV-PTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFE 176

Query: 161 SNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGV 220
            NIV+ERTGKRPLL GDV VT RDG+A IGDIEFTDNSSWIRSRKFR+GA+V  GS   V
Sbjct: 177 DNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDV 236

Query: 221 RICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFL 280
            I EAIT+AF VKDHRGELYKKHHPPML DEVWRLEKIGKDGAFHKKL++  I TVQD L
Sbjct: 237 SIREAITEAFAVKDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLL 296

Query: 281 KLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRA 340
           KLSIV+PQ+LR ILGPGMSEKMWEV ++HAR C +G  LYI RG+N  + LN ICQ+V  
Sbjct: 297 KLSIVDPQKLRTILGPGMSEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMM 356

Query: 341 VINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHN 400
            IN Q Y  ++L+ L+RTY+E  V QAY NW  LE  +G LNE ALLT+G+L +Q+PN  
Sbjct: 357 DINGQIYARQELSNLDRTYVEKFVIQAYSNWNSLEEVDGSLNETALLTRGELGEQHPNLQ 416

Query: 401 QSMIK-PFQQNGS-ASDK-SLDVGFLVSSSTNNTQFGSNDWQIQSAYISSA--PGIGYSI 455
           ++M + P Q +G   +DK S++VG        N   GS++WQ+ +AY  +    G+ Y +
Sbjct: 417 ETMARAPLQPHGCYLTDKSSMEVG--------NADVGSSNWQMNAAYQGTPVDTGVRYYL 468

Query: 456 SESSDDGDLTTSRSFINGN 474
           +ESS   ++T      NG+
Sbjct: 469 TESSSGCNITPPSRTFNGS 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521187|ref|XP_003630882.1| hypothetical protein MTR_8g104510 [Medicago truncatula] gi|355524904|gb|AET05358.1| hypothetical protein MTR_8g104510 [Medicago truncatula]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/473 (60%), Positives = 359/473 (75%), Gaps = 16/473 (3%)

Query: 1   MAAKRFLNGS--DPEEPPEKRTRTR--PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNE 56
           MAAKRF + S  D ++P +KR RT   PSFASVIGE VMV + QN FS LEPLLRRVVNE
Sbjct: 1   MAAKRFFDDSNQDKDKPNDKRIRTTTIPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNE 60

Query: 57  EVQRGVSK-YNPCRSLTRSSSLRIQALE-PSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           EV+R + + Y P RS+T+S SLR++ +E P SL+ +F  KLSLPIFTGSKI D++ N + 
Sbjct: 61  EVERAMRQCYPPVRSITKSPSLRLEGMEEPLSLQFMFKNKLSLPIFTGSKILDMDGNSIS 120

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           +++VD RSN  + P SL  PIKIE+VVLDGDFPP  ++  WT EEF ++IVKERTGKRPL
Sbjct: 121 VILVD-RSNDQVVPTSLSHPIKIEIVVLDGDFPPSKKESSWTSEEFNNSIVKERTGKRPL 179

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVK 233
           LTG++N+T RDG+APIGDIEFTDNSSWIRSRKFR+  ++A G+ Q VRI E +T+AFVVK
Sbjct: 180 LTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEAFVVK 239

Query: 234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
           DHRGELYKKHHPP L+DEVWRLEKIGKDGAFHKKL+  GI TVQ+FLKLS+V+P RLRKI
Sbjct: 240 DHRGELYKKHHPPSLKDEVWRLEKIGKDGAFHKKLTLEGITTVQEFLKLSVVDPLRLRKI 299

Query: 294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT 353
           LG GMSEKMW+VT++HA+ CVMGNKLY++RG    I LN ICQ+VRA IN QT   RD+ 
Sbjct: 300 LGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDIC 359

Query: 354 KLNRTYIENTVRQAYLNWRELEVAEGVLNE-MALLTQGDLVDQYPNHN-QSMIKPFQQNG 411
            ++++YI+N VR+AY  W ELE  + VLN+ +ALLTQG+ ++Q+PN+N Q  +  + QN 
Sbjct: 360 NMDKSYIQNYVREAYARWNELEEIDEVLNDNVALLTQGETMEQFPNNNHQEPVITYDQNN 419

Query: 412 SASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISS--APGIGYSISESSDDG 462
              DKSL+ G    ++ NN Q G  DW   S++ +S    G+ YS  +S  DG
Sbjct: 420 YFGDKSLENG-NYVANNNNAQIGCTDW---SSFPTSPFMNGMPYSFPDSQSDG 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121274|ref|XP_002318542.1| predicted protein [Populus trichocarpa] gi|222859215|gb|EEE96762.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/415 (66%), Positives = 331/415 (79%), Gaps = 8/415 (1%)

Query: 1   MAAKRFLN--GSDPEEP-PEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           MA KRFL   GSD ++P  +KR R RPSFASVIGEAVMVNS +NF  ALEP+LRRVVNEE
Sbjct: 1   MAGKRFLEEPGSDLDQPHDQKRMRRRPSFASVIGEAVMVNSLKNFCLALEPMLRRVVNEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVV 117
           ++  + +      LTRS SLRIQ+LEPSSL+L+FS+ L LPIFTGSKI D++++PLQI++
Sbjct: 61  METNLRRSTSF--LTRSPSLRIQSLEPSSLQLMFSKNLLLPIFTGSKIVDLDSSPLQILL 118

Query: 118 VDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGD 177
           VDTR + +++   LP PIKIE+VVLDGDFP  D   WT EEF SNIVKER GKRPLL GD
Sbjct: 119 VDTRGDQVVS-TYLPHPIKIEVVVLDGDFPSYDNRTWTSEEFNSNIVKERKGKRPLLAGD 177

Query: 178 -VNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHR 236
            ++VT RDG APIG+IEFTDNSSW+RSRKFR+GA+V   SYQGVRI EAIT+AFVVKDHR
Sbjct: 178 CLSVTLRDGFAPIGEIEFTDNSSWVRSRKFRLGARVVPESYQGVRIREAITEAFVVKDHR 237

Query: 237 GELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296
           GELYKKHHPPML+DEVWRLEKIGKDGAFHKKL+ A I TVQDFLKLS+V+P+RLR+ILG 
Sbjct: 238 GELYKKHHPPMLQDEVWRLEKIGKDGAFHKKLATARIHTVQDFLKLSVVDPRRLREILGH 297

Query: 297 GMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLN 356
           GMSEKMWEVT++HAR C +GNK ++FR  NC I  +PICQ+V AVI+  +Y +++L    
Sbjct: 298 GMSEKMWEVTIKHARTCDLGNKHFVFRRPNCTITFDPICQIVHAVIDGSSYSSKELPS-K 356

Query: 357 RTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNG 411
             YIE  VR AY+ W  LE   G+ + + LLTQG+LVDQYPNH+QS++K FQ  G
Sbjct: 357 TGYIETLVRHAYVEWNSLEEIVGISSGIPLLTQGELVDQYPNHHQSIVKSFQPLG 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521181|ref|XP_003630879.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524901|gb|AET05355.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/483 (59%), Positives = 355/483 (73%), Gaps = 22/483 (4%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTR--PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNE 56
           MAAKRFL+    D  +P +KR RT    SFASVIGE VMV + QN FS LEPLLRRVVNE
Sbjct: 1   MAAKRFLDDFNEDKVKPNDKRMRTTTTSSFASVIGEIVMVKNMQNLFSGLEPLLRRVVNE 60

Query: 57  EVQRGVSK-YNPCRSLTRSSSLRIQALE-PSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           EV+R + + Y P RS+T S SLR++A+E P S + +F +KLSLPIFTGS+I D++ N + 
Sbjct: 61  EVERAMRQCYPPVRSITNSPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGNSIN 120

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           +++VD +SN  I P SLP PIKIE+VVLDGDFPP +++  WT EEF SNIVKER GKRPL
Sbjct: 121 VILVD-KSNDQIVPTSLPHPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGKRPL 179

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVK 233
           LTG++N+T RDG+APIGDIEFTDNSSWIRSRKFR+  ++A G+ Q VRI E +T+ FVVK
Sbjct: 180 LTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVK 239

Query: 234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
           DHRGELYKKHHPP L DEVWRLEKIGKDGAFHKKL++ GI TVQ+FLKLS+V+P RLRKI
Sbjct: 240 DHRGELYKKHHPPSLNDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRLRKI 299

Query: 294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT 353
           LG GMSEKMW+VT++HA+ CVMGNKLY++RG    I LN ICQ+VRA IN QT   RD+ 
Sbjct: 300 LGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDIC 359

Query: 354 KLNRTYIENTVRQAYLNWRELEVAEGVLNE-MALLTQGDLVDQYP--NHNQSMIKPFQQN 410
            ++++YI+N VR+AY  W ELE  + VLN+ +ALLTQG  V+Q+   NH  S+I  + QN
Sbjct: 360 NMDKSYIQNYVREAYARWNELEEIDEVLNDNVALLTQGGTVEQFQSNNHQGSLIT-YDQN 418

Query: 411 GSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAPG----IGYSISESSDDGDLTT 466
               D +L+ G  VS++ NN Q G     I+     ++P     I YS  +S  DG  T 
Sbjct: 419 NYFGD-TLETGNYVSNN-NNGQIGC----IEGPPFPTSPFMNEIIPYSFLDSQSDGGGTM 472

Query: 467 SRS 469
             S
Sbjct: 473 PSS 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455994|ref|XP_002276848.1| PREDICTED: uncharacterized protein LOC100242382 [Vitis vinifera] gi|297734235|emb|CBI15482.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/482 (56%), Positives = 345/482 (71%), Gaps = 20/482 (4%)

Query: 1   MAAKRFL--NGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEV 58
           MAAKRF   +GSDP++P EKR R RPS  SV GE +  N  +NF + LEP+LR+VV EEV
Sbjct: 1   MAAKRFHEESGSDPDQPDEKRIRGRPSLMSVFGEVLTGNFVENFCTTLEPMLRKVVVEEV 60

Query: 59  QRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVV 118
           ++G+ K   CR  T+S S RIQA EPS+++L F++ LSLPIFTG+KI + EN PLQ+++ 
Sbjct: 61  EKGIRK---CR-FTKSPSFRIQAPEPSTMRLTFTKNLSLPIFTGTKIVNDENKPLQLIIE 116

Query: 119 DTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDV 178
           DT  +      +L    K+E++VLDGDFP GDR++W+ EEF+++IVKER GKRPLL GDV
Sbjct: 117 DTSGDNQNILRALSHSFKVEIIVLDGDFPGGDRENWSTEEFDNSIVKERAGKRPLLAGDV 176

Query: 179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGE 238
            VT R G A IGDIEFTDNSSWIRSR FR+GA+V   S +  RI EAIT+AFVVKDHRGE
Sbjct: 177 LVTMRGGAAVIGDIEFTDNSSWIRSRNFRLGARVVPDSCKEFRIREAITEAFVVKDHRGE 236

Query: 239 LYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGM 298
           LYKKH+PPML+DEVWRLEKIGKDGAFHKKL++  + +VQDFLKLSIV+P +L+ ILG GM
Sbjct: 237 LYKKHYPPMLDDEVWRLEKIGKDGAFHKKLASINVNSVQDFLKLSIVDPAKLKNILGVGM 296

Query: 299 SEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRT 358
           S++MWE T++HAR C++GNKLYI+RG +  + LNPIC VV+  IN QTY T       RT
Sbjct: 297 SDRMWESTIKHARTCMIGNKLYIYRGSHFTMTLNPICTVVKVKINGQTYATPQELSSIRT 356

Query: 359 YIENTVRQAYLNWRELEVAEGVLNEMALLTQGD-LVDQYPNHNQSMIKPFQQNGSASDKS 417
           Y+E  VRQAY NW  LEV + VLNE ALLTQG+ +V+QYPNH  +M  PFQQ G+ +D S
Sbjct: 357 YLEELVRQAYANWDSLEVVDEVLNETALLTQGEQIVEQYPNHEVTMAIPFQQLGNPADTS 416

Query: 418 LDVGFLVSSSTNNTQFGSNDWQIQSAYIS---SAPGIGYSISESSDDGDLTTSRS--FIN 472
           + VG+        T  G + WQ+   Y         +   I+ SS +GD T+S    F N
Sbjct: 417 MGVGY--------TDVGCSHWQMNPLYHGIPFDHSSVHCYITRSSSEGDGTSSSGAPFPN 468

Query: 473 GN 474
           G+
Sbjct: 469 GS 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513070|ref|XP_003525237.1| PREDICTED: uncharacterized protein LOC100802257 [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/481 (56%), Positives = 354/481 (73%), Gaps = 23/481 (4%)

Query: 1   MAAKRFLNGSDPEE---PPEKRTRT--RPSFASVIGEAVMVNSFQNFFSALEPLLRRVVN 55
           MAAKRF + SD +    P +KR RT  RPSFASVIGE VMV + QN FS LEPLLRRVVN
Sbjct: 1   MAAKRFFDDSDQDNNKPPGDKRMRTTPRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVN 60

Query: 56  EEVQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNP 112
           EEV+R +      R+++RS SLRI+A    +PS+ +L+FS+KL +PIFTGS+I D++ NP
Sbjct: 61  EEVERVMRHCTVPRTISRSPSLRIEAASLEKPSNYELMFSKKLLVPIFTGSRIVDIDGNP 120

Query: 113 LQIVVVDTRSNG---LIA-PASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERT 168
           +Q+++VD +S G   L+A P S+PQPIK+E+VVLDGDFP  +++ WT EEF +NIVKERT
Sbjct: 121 IQVILVD-KSGGDGELVAVPTSVPQPIKLEIVVLDGDFP-NNKESWTTEEFNNNIVKERT 178

Query: 169 GKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITD 228
           GKRPLLTG++N+T RDG+API +IEFTDNSSWIRSRKFR+  +VA GS   + I + +T+
Sbjct: 179 GKRPLLTGELNLTMRDGIAPIEEIEFTDNSSWIRSRKFRVAVRVAPGSNHTLPIRQGMTE 238

Query: 229 AFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQ 288
            FVVKDHRGELYKKH+PP L DEVWRLEKIGKDGAFHKKLS  GI +VQDFLKLS+V+  
Sbjct: 239 PFVVKDHRGELYKKHYPPKLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDVH 298

Query: 289 RLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYL 348
           RLRKILG GMSEKMWEVTM+HA+ C  GNK Y++RG N  + LN ICQ+VRA IN Q++ 
Sbjct: 299 RLRKILGVGMSEKMWEVTMKHAKTCEKGNKYYVYRGPNFSVFLNSICQLVRADINGQSFP 358

Query: 349 TRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQ 408
           +R+ + + R+Y+E  VR+AY+ W +LE  +      A LTQG+ ++Q+PN++Q+ +  + 
Sbjct: 359 SRERSNMTRSYMEKLVREAYVRWNDLEEIDA-----AFLTQGETLEQFPNNHQASLIAYD 413

Query: 409 QNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAY--ISSAPGIGYSISESSDDGDLTT 466
           QN    DKS +VG  V   T+N Q G ++W +   +   S   GI YS  +S  D D++ 
Sbjct: 414 QNDYFGDKSAEVGNYV--PTHNAQIGCSEWAVNGTFGTTSFVNGIPYSFLDSQSDSDISP 471

Query: 467 S 467
           S
Sbjct: 472 S 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522779|ref|XP_003530023.1| PREDICTED: uncharacterized protein LOC100792405 [Glycine max]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/485 (56%), Positives = 356/485 (73%), Gaps = 25/485 (5%)

Query: 1   MAAKRFLNGSD--PEEPPEKRTR-TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           MAAKRF N SD  P+ P +KR R TRPSFASVIGE VM+ + +N FSA+EPLLRRV+ EE
Sbjct: 1   MAAKRFFNDSDQDPDNPGDKRMRNTRPSFASVIGEVVMIKNMENLFSAMEPLLRRVIGEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           V R + ++    S  RS SLR+QAL   +PS+L+L FS++LSLPIFTGS+I +V+  P+ 
Sbjct: 61  VDRVMRQW--PHSFARSPSLRLQALDQQQPSTLQLWFSKRLSLPIFTGSRILEVDGKPIN 118

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           IV++D +S+G + P SLP  IK+E+VVLDGDFPP D D  WT EEF  ++VKER GKRPL
Sbjct: 119 IVLMD-KSSGKVVPTSLPHAIKLEIVVLDGDFPPDDNDEDWTSEEFNRHVVKERIGKRPL 177

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQG-VRICEAITDAFVV 232
           L G++NV  RDG+APIGDIEFTDNS WIR RKFR+  +VA G+ QG VRI EAI++AF V
Sbjct: 178 LAGELNVIMRDGIAPIGDIEFTDNSCWIRCRKFRVAVRVAPGTNQGGVRIREAISEAFAV 237

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRK 292
           KDHRGELYKKH+PPML DEVWRLEKIGKDGAFH+KLS+ GIKTVQDFLKL++++  +LR 
Sbjct: 238 KDHRGELYKKHYPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDTLKLRN 297

Query: 293 ILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRD- 351
           ILG GMS+KMWEVT++HA  C  G+K++I+RG +  I L+P+C+++RA  N  T+  RD 
Sbjct: 298 ILGIGMSDKMWEVTIKHAMTCDTGSKMHIYRGPDYTIFLDPVCKLIRADFNGHTFSNRDA 357

Query: 352 LTKLNRTYIENTVRQAYLNWRELEVAEGVLNE-MALLTQGD-LVDQYPNHN--QSMIKPF 407
           ++ LN+ YI+  V++AY  W  LE  +GVLN+ +ALLTQGD  V+Q+ N+    + +  +
Sbjct: 358 MSPLNKAYIDKLVKEAYARWNNLEEIDGVLNDNIALLTQGDQTVEQFANNQPAAASVVTY 417

Query: 408 QQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAP---GIGYSISESSDDGDL 464
            QN   SDKS   G  V++  NNTQ G  +W +  AY S AP   G  +S S +  DG++
Sbjct: 418 DQNQYYSDKS---GSYVAN--NNTQMGCCEWSLNQAY-SPAPFANGFPFSFSVTQSDGEI 471

Query: 465 TTSRS 469
           T S S
Sbjct: 472 TASGS 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529562|ref|XP_003533359.1| PREDICTED: uncharacterized protein LOC100803213 [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/486 (56%), Positives = 353/486 (72%), Gaps = 26/486 (5%)

Query: 1   MAAKRFLNGSD--PEEPPEKRTR-TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           M+AKRF N SD  PE P  KR R TRPSFASVIGE VMV + +N FSA+EPLL+RVV EE
Sbjct: 1   MSAKRFFNDSDQDPENPGGKRMRNTRPSFASVIGEVVMVKNLENLFSAMEPLLKRVVGEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           V + + +++  RS  RS SLR+QA+   +PS+L+L FS++LSLPIFTGS+I DV+ NP+ 
Sbjct: 61  VDQAMRQWS--RSFARSPSLRLQAMDQQQPSTLQLCFSKRLSLPIFTGSRILDVDGNPIN 118

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           IV++D +SNG   P SL   IK+E+VV+DGDFP  D D  WT EEF  +IVKER GKRPL
Sbjct: 119 IVLMD-KSNGQGVPTSLSNAIKLEIVVVDGDFPLNDNDEDWTSEEFNRHIVKERNGKRPL 177

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQG-VRICEAITDAFVV 232
           L G++NV  RDG+AP GDIEFTDNSSWIR RKFR+  +V  G+  G VRI EA+T+AFVV
Sbjct: 178 LAGELNVIMRDGIAPTGDIEFTDNSSWIRCRKFRVAVRVVPGTNPGGVRIREAMTEAFVV 237

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRK 292
           KDHRGELYKKHHPPML DEVWRLEKIGKDGAFH+KLS+ GIKTVQDFLKL++++  +LR 
Sbjct: 238 KDHRGELYKKHHPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDALKLRN 297

Query: 293 ILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRD- 351
           ILG GMS+KMWEVT++HA  C +G+K+YI+RG    I L+P+C+++RA +N  T+  RD 
Sbjct: 298 ILGMGMSDKMWEVTIKHAMTCDIGSKMYIYRGPEFTIFLDPVCKLIRADVNGHTFSNRDP 357

Query: 352 LTKLNRTYIENTVRQAYLNWRELEVAEGVLNE-MALLTQGD-LVDQYPNHN---QSMIKP 406
           ++ LN+ YI+  V++AY  W  LE  + VLN+ +ALLTQGD  V+Q+ N+     S+   
Sbjct: 358 MSHLNKAYIDKLVKEAYARWSNLEEIDEVLNDNIALLTQGDQTVEQFANNQPAAASVETT 417

Query: 407 FQQNGSASDKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSAP---GIGYSISESSDDGD 463
           + QN   SDKS   G  V++  NNTQ G  +W +  AY S AP   G  +S S    DGD
Sbjct: 418 YDQNQYYSDKS---GSYVAN--NNTQMGCCEWSLNQAY-SPAPFANGFPFSFSVRQSDGD 471

Query: 464 LTTSRS 469
           +T S S
Sbjct: 472 ITASGS 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455996|ref|XP_002276874.1| PREDICTED: uncharacterized protein LOC100264668 [Vitis vinifera] gi|297734236|emb|CBI15483.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/478 (55%), Positives = 341/478 (71%), Gaps = 19/478 (3%)

Query: 1   MAAKRFLNGSDPEEPPEK---RTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           MAAKR  +  +P+    +     RTRP FAS+IGE    NS+QN  +ALEP+LRRVVNEE
Sbjct: 1   MAAKRLFDEMEPDADQRRIGRSIRTRPFFASIIGETFRGNSWQNICTALEPMLRRVVNEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVV 117
           V+RG+ +    RSLT S SLRI   EPS+L+LIFS+ LSLPIFTG+KI D ENNPL + +
Sbjct: 61  VERGLVR--GARSLTWSPSLRIHGPEPSNLQLIFSKNLSLPIFTGAKIRDAENNPLLLCI 118

Query: 118 VDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH--WTPEEFESNIVKERTGKRPLLT 175
           VD +S       +LP PI++++VVLDGDFP G+  +  W+ EEF ++IVKERTGKRPLL 
Sbjct: 119 VD-KSGDEAVQTTLPYPIQLDIVVLDGDFPHGELTNSTWSMEEFNNSIVKERTGKRPLLV 177

Query: 176 GDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDH 235
           GDV VT RDG A +GDIEFTDNS WIR RKFR+GA+V  GS  GVRI EA T+ F V+DH
Sbjct: 178 GDVLVTMRDGFAVVGDIEFTDNSHWIRGRKFRLGARVVPGSCHGVRILEAFTEPFAVRDH 237

Query: 236 RGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILG 295
           RGELY+KHHPPML D+VWRLE I KDGAFHK+L+   I TVQ+FLKL IV+P +LR+ILG
Sbjct: 238 RGELYRKHHPPMLNDDVWRLENISKDGAFHKRLAFKHINTVQEFLKLFIVDPAKLRRILG 297

Query: 296 PGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYL-TRDLTK 354
            GMS+K WE  ++HA  C+MGNK++IF G +  + LNPICQ+VRAVIN Q Y   ++L+ 
Sbjct: 298 AGMSDKKWEAVIKHASTCLMGNKVHIFHGPHYTVTLNPICQLVRAVINGQIYANNQELSS 357

Query: 355 LNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSAS 414
           +N+ Y+++ VR+AY+NW  LE  + +L+E ALLTQGD  +Q PNH+Q+M +PFQQ G   
Sbjct: 358 INQAYVKSLVREAYINWNSLEEVDELLSETALLTQGDPREQCPNHHQTMERPFQQLGYLP 417

Query: 415 DKSLDVGFLVSSSTNNTQFGSNDWQIQSAYISSA--PGIGYSISESSDDGDLTTSRSF 470
           DK+ D+ +        +  GS++W     Y  +    GIGY I +S+ DGDL  S+ F
Sbjct: 418 DKATDIIY--------SDVGSSNWPTNPTYHGTLIDSGIGYYIMDSTVDGDLEPSKHF 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.896	0.942	0.559	4.7e-119
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.763	0.559	0.494	5.5e-93
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.873	0.665	0.444	1.5e-92
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.803	0.633	0.471	3.6e-89
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.850	0.717	0.423	3.2e-81
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.820	0.649	0.428	2.2e-80
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.696	0.586	0.392	3.6e-57

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 254/454 (55%), Positives = 328/454 (72%)

Query:     1 MAAKRFLNG--SDPEEPPEKRTRT-RPSFASVIGEAVMVNSFQNFF-SALEPLLRRVVNE 56
             MA KR      SD E   EKR ++  PS AS I         +N   S LEP++R+VV +
Sbjct:     1 MAGKRLFQDLDSDQENKSEKRIKSVLPSLASPISSVFGALISENTLRSVLEPVIRKVVRQ 60

Query:    57 EVQRGVSKYNPCRSLTRSSSLRIQALEPSS--LKLIFSQKLSLPIFTGSKITDVENNPLQ 114
             EV+ G+SK      L+RSSS RI+A E ++  LKLIF + L  PIFTGSKI+DV+NNPL+
Sbjct:    61 EVEYGISKRF---RLSRSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDVDNNPLE 117

Query:   115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLL 174
             I++VD  SN    P +L +PIK+++V L GDFP GD+  WT +EFESNI+KER GKRPLL
Sbjct:   118 IILVDD-SN---KPVNLNRPIKLDIVALHGDFPSGDK--WTSDEFESNIIKERDGKRPLL 171

Query:   175 TGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSY-QGVRICEAITDAFVVK 233
              G+V+VT R+GVA IG+I FTDNSSWIRSRKFRIGAKVA+GS  QGV +CEA+T+A VV+
Sbjct:   172 AGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAIVVR 231

Query:   234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
             DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLS+  I TVQDFLKLS+V+   LR+I
Sbjct:   232 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDELRQI 291

Query:   294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT 353
             LGPGMS++ WEVT++HAR+C++GNKLYI RG N  ++LNPIC+V++A+I+     +++  
Sbjct:   292 LGPGMSDRKWEVTLKHARECILGNKLYISRGPNFFMILNPICEVMKALIDGHVLSSQE-- 349

Query:   354 KLNRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVDQ-YP-NHNQSMI--KPFQQ 409
              LN+ Y++N VR AY     LEV E   NE ALLTQGD +DQ Y  +H Q++   K +QQ
Sbjct:   350 SLNQPYVKNLVRDAYSKGNFLEVGERTANEAALLTQGDDLDQQYAASHYQNIEIDKSYQQ 409

Query:   410 NGSASDKS---LDV---GFLVSSSTNNTQF-GSN 436
             NG   ++S   L++   G++ + +  N  F GS+
Sbjct:   410 NGYVQERSTNNLEIVNEGYITTPAEFNICFTGSS 443

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 186/376 (49%), Positives = 258/376 (68%)

Query:     3 AKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGV 62
             AKR L+G+D ++P  KR    P+FASVI EA+ V+S Q   S+LEP+LRRVV+EE++R +
Sbjct:    12 AKRNLDGNDDDQPERKR----PAFASVIVEALKVDSLQKLCSSLEPILRRVVSEELERAL 67

Query:    63 SKYNPCRSLTRSSSL---RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVD 119
             +K  P R LT SS     RI+  +   L+L F  +LSLP+FTG K+   +   + +V++D
Sbjct:    68 AKLGPAR-LTGSSGSSPKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGAVIHVVLID 126

Query:   120 TRSNGLIAPASLPQP-IKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDV 178
               +   +     P+   K+ +VVL+GDF   D + WT EEFES++VKER+GKRPLLTG+V
Sbjct:   127 ANTGRAVVYG--PEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRPLLTGEV 184

Query:   179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGE 238
              VT ++GV  +G++ FTDNSSWIRSRKFR+G +V  G   G+RI EA T+AFVVKDHRGE
Sbjct:   185 YVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVVKDHRGE 244

Query:   239 LYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGM 298
             LYKKH+PP L D+VWRL+KIGKDGAFHKKL+A GI TV+DFL++ + +  +LR ILG GM
Sbjct:   245 LYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRTILGSGM 304

Query:   299 SEKMWEVTMQHARKCVMGNKLYIFRGH---NCIILLNPICQVVRAVINNQTYLTRDLTKL 355
             S KMW+  ++HA+ CV  +KLYI+      N  ++ N I ++   +  +Q +    LT  
Sbjct:   305 SNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIYELSGLISGDQYFSADSLTDS 364

Query:   356 NRTYIENTVRQAYLNW 371
              + Y+E  V++AY NW
Sbjct:   365 QKVYVEGLVKKAYENW 380

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 187/421 (44%), Positives = 273/421 (64%)

Query:     1 MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQR 60
             M  KR L   D ++  ++  R RP+ ASVI EA+ ++S Q   S+LEP+LRRVV+EEV+R
Sbjct:    12 MREKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPILRRVVSEEVER 71

Query:    61 GVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDT 120
              ++K  P R   RSS  RI+ +   +L+L F  +LS+P+FTG KI   +   + +V++D 
Sbjct:    72 ALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHVVLLDM 131

Query:   121 RSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNV 180
              + G +         K+++VVLDGDF   D D W+ EEFE ++VKER GKRPLLTGDV V
Sbjct:   132 -TTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTGDVQV 190

Query:   181 TARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELY 240
             T ++GV  +G++ FTDNSSWIR RKFR+G +V+ G  +G+R+ EA T+AF VKDHRGELY
Sbjct:   191 TLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHRGELY 250

Query:   241 KKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSE 300
             KKH+PP L+DEVWRLEKIGKDGAFHKKL+ AGI  V++FL+L + + Q+LR ILG GMS 
Sbjct:   251 KKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGMSN 310

Query:   301 KMWEVTMQHARKCVMGNKLYIFRGHNCI-ILLNPICQVVRAVINNQTYLTRDLTKLNRTY 359
             +MWE   +H++ CV+   LY++   + + ++ N I +    +   Q Y    L+   + Y
Sbjct:   311 RMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEFSGLISGKQYYPADSLSDNQKGY 370

Query:   360 IENTVRQAYLNWRE-LEVAEGVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSL 418
             ++  VR+AY NW + +E     L     +++ D +D    ++  +  P Q + S SD ++
Sbjct:   371 VDGLVRKAYENWEQVIEYDSKSLMNFNQVSKTDDID----YSMPVSVPSQPSTSYSDVTV 426

Query:   419 D 419
             +
Sbjct:   427 E 427

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 188/399 (47%), Positives = 266/399 (66%)

Query:     4 KRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVS 63
             KR    +D ++P  KR    P+ ASVI EA+ V+S Q   S+LEP+LRRVV+EEV+R ++
Sbjct:     2 KRNFERNDDDKPERKR----PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALA 57

Query:    64 KYNPCRSLTRS--SSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTR 121
             K  P R  T S  S  RI   +  +L+L F  +LSLP+FTG ++   +   + +V++D  
Sbjct:    58 KLVPTRLTTSSVFSPKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLIDAN 117

Query:   122 SNGLIAPASL-PQP-IKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVN 179
             +     P ++ P+  +K+E+VVL GDF   D + WT EEFES++VKER GKRPLLTGD+ 
Sbjct:   118 TG---RPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLF 174

Query:   180 VTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGEL 239
             V  ++GV  +G+I FTDNSSWIRSRKFR+G +V  G   G+RI EA T+AF VKDHRGEL
Sbjct:   175 VVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGEL 234

Query:   240 YKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMS 299
             YKKH+PP L DEVWRLEKIGKDGAFHK+L+AAGI TV+ FL+  + +  +LR ILG GMS
Sbjct:   235 YKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMS 294

Query:   300 EKMWEVTMQHARKCVMGNKLYIFR---GHNCIILLNPICQVVRAVINNQTYLTRD-LTKL 355
              KMW++ ++HA+ CV+  KLYI+      +  ++ N I ++   +  +Q YL+ D L++ 
Sbjct:   295 NKMWDLLVEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIYELSGLITEDQ-YLSADSLSES 353

Query:   356 NRTYIENTVRQAYLNWRELEVAEGVLNEMALLTQGDLVD 394
              + Y++  V++AY NW ++   EG    +  L Q + +D
Sbjct:   354 QKVYVDGLVKKAYENWNQVVEYEG--ESLLNLNQPERLD 390

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 178/420 (42%), Positives = 254/420 (60%)

Query:     8 NGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNP 67
             N    +  PE + +  P+ ASVI EAV V+S Q   S+LEPL RR+V+EEV+R +S+   
Sbjct:    13 NQEHADNLPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERAISRLEN 72

Query:    68 CRSLTRSSSL-RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLI 126
              +S +RS+   +IQ L+  +L+L F  ++   +FTG K+   + + + +V++D  +  +I
Sbjct:    73 SKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSAIHVVLIDANTGNVI 132

Query:   127 APASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGV 186
                      K+ +VVLDGDF   D   WT E FES  VKER GKRP+LTGD +V  ++GV
Sbjct:   133 QTGE-ESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPILTGDRHVIIKEGV 191

Query:   187 APIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPP 246
               +G + FTDNSSWIRSRKFR+G K A G +    I EA T+ F VKDHRGELYKKH+PP
Sbjct:   192 GTLGKLTFTDNSSWIRSRKFRLGVKPATGFH----IREAKTEPFAVKDHRGELYKKHYPP 247

Query:   247 MLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVT 306
             +L DEVWRL+KI KDGA HKKL  + I TV+DFL++ + +PQ+LR +LG GMS +MW+ T
Sbjct:   248 VLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSLLGSGMSNRMWDNT 307

Query:   307 MQHARKCVMGNKLYIF---RGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENT 363
             ++HA+ CV+G KLY +   + H   ++ N I +    + N     +  L    +   +  
Sbjct:   308 VEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGHFLSSESLNHDQKISADTL 367

Query:   364 VRQAYLNWREL-EVAEGVLNEMALLTQG--DLVD--QYPNHN-QSMIKPFQQ--NGSASD 415
             V+ AY NW ++ E    +LN + +  +G   L +     NH  Q      QQ  NG +SD
Sbjct:   368 VKTAYENWHKVVEYGGKLLNCLPVAKKGIKSLPEPKMAQNHQTQQKALQCQQTVNGYSSD 427

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 174/406 (42%), Positives = 248/406 (61%)

Query:    11 DPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRS 70
             D ++ PE + +  P+ ASVI EAV V+S Q   S+LEPL RR+V+EEV+R +S+    + 
Sbjct:    12 DTDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERALSRLGNAKL 71

Query:    71 LTRSSS-LRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPA 129
              +RS    RIQ     +L+L F  ++   +FTG K+     + + +V++D  +  ++   
Sbjct:    72 TSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTG 131

Query:   130 SLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPI 189
                   K+ +VVL+GDF   D + WT E FES  VKER GKRP+LTGD  +  ++GV  +
Sbjct:   132 E-ESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVLKEGVGTL 190

Query:   190 GDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLE 249
             G++ FTDNSSWIRSRKFR+G K A G      I EA T+ F VKDHRGELYKKH+PP + 
Sbjct:   191 GELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELYKKHYPPAVH 250

Query:   250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQH 309
             DEVWRL++I KDG  HKKL  A I TV+DFL+L + +PQ+LR +LG GMS +MWE T++H
Sbjct:   251 DEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEH 310

Query:   310 ARKCVMGNKLYIF---RGHNCIILLNPICQVVRAVINNQTYLTRD-LTKLNRTYIENTVR 365
             A+ CV+G KLY+F   + H   ++ N I +  R +I N  +L+ + L    +   +  V+
Sbjct:   311 AKTCVLGGKLYVFYTDQTHATGVVFNHIYEF-RGLITNGQFLSLESLNHDQKISADILVK 369

Query:   366 QAYLNWRELEVAEG-VLN-------EMALLTQGDLVDQY--PNHNQ 401
              AY NW +    +G +LN       E+  L +  +V     PNH Q
Sbjct:   370 LAYENWHKAIEYDGKLLNCLPVAEKEIKSLLEPKMVSAQTAPNHQQ 415

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 138/352 (39%), Positives = 196/352 (55%)

Query:    25 SFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKY--NPCRSLTRSSSLRIQAL 82
             +F  V+ + +   S   F   +E ++RR+V EE+QR +  +  + C S+ RS S    + 
Sbjct:    24 TFKKVVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERSRSETPSSR 83

Query:    83 EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVL 142
               S LKL F       IFTGSKI   + +PL I +VD  +N L++        ++ELV L
Sbjct:    84 --SRLKLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSS-RVELVPL 140

Query:   143 DGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPI-GDIEFTDNSSWI 201
             + DF     + WT E F  NI+ +R GKRPLLTGD+ V  ++GV  I GDI F+DNSSW 
Sbjct:   141 NADFT---EESWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWT 197

Query:   202 RSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKD 261
             RSRKFR+GAK+      G    EA ++AF  +D RGE YKKHHPP   DEVWRLEKI KD
Sbjct:   198 RSRKFRLGAKLT-----GDGAVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKD 252

Query:   262 GAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGN-KLY 320
             G    +L+   I TV+DF +L  V    L  I+G G+S+K W   + HA  CV+   + Y
Sbjct:   253 GVSATRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECY 312

Query:   321 IFRGHN--CIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLN 370
             I+  +     +L N + +++R   N       D+  L++  ++    +AY N
Sbjct:   313 IYNANTPGVTLLFNSVYELIRVSFNGN-----DIQNLDQPILDQLKAEAYQN 359


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      474       474    0.0010  118 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  284 KB (2148 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.60u 0.13s 40.73t   Elapsed:  00:00:04
  Total cpu time:  40.60u 0.13s 40.73t   Elapsed:  00:00:04
  Start:  Tue May 21 01:26:15 2013   End:  Tue May 21 01:26:19 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XII0454 hypothetical protein (435 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	474
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-150

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  429 bits (1104), Expect = e-150
 Identities = 168/303 (55%), Positives = 213/303 (70%), Gaps = 9/303 (2%)

Query: 87  LKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDF 146
           LKL+F  KLSLPIFTGSKI   +  P++I +VD  +     P S     K+E+VVL GDF
Sbjct: 2   LKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTGVTSGPLS---SAKLEVVVLHGDF 58

Query: 147 PPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKF 206
              D ++WT EEF  NIVKER GKRPLLTGDV VT ++GVA IG+I FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 207 RIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHK 266
           R+GA+V  GSY GVR+ EA+T++FVVKDHRGELYKKHHPP LEDEVWRLEKIGKDGAFHK
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 267 KLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFR--- 323
           +L+A+GI TV+DFL+L   +P +LR+ILG GMS KMWE T+ HA+ CV+G+K YI+R   
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 324 GHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLNE 383
             N  +  N + ++V    +       +L++L +  +   V+QAY NW  +   E   +E
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQAAVNQLVKQAYQNWNNI---EEYDHE 295

Query: 384 MAL 386
           M  
Sbjct: 296 MLN 298

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	474
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	89.62
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	87.45
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	87.04
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	82.97
PRK04301	317	radA DNA repair and recombination protein RadA; Va	82.83

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=2.1e-120  Score=900.97  Aligned_cols=294  Identities=56%  Similarity=0.963  Sum_probs=288.5

Q ss_pred             ceEEEEccCCCCCcccCCceeecCCCCeEEEEEEcCCCCeeecCCCCCcceEEEEEecCCCCCCCCCCCCHHHHhccccc
Q 011961           86 SLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVK  165 (474)
Q Consensus        86 ~~~L~F~n~l~~pifTg~kI~a~~g~~I~V~L~D~~t~n~iv~~g~~ss~kvEIvVLdGDF~~~~~e~WT~eEF~~~IV~  165 (474)
                      +|||+|+|+|++|||||++|+|+||+||+|+|+|++|+   |++||+|++|||||||||||+.+++++||+|||++|||+
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~---v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~   77 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG---VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVK   77 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC---ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEee
Confidence            58999999999999999999999999999999998876   999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccceEEEecCceeecCCeeeecCCccccccceEEEEEEecCCCCccceeeeeecceEEeecCCcccccCCC
Q 011961          166 ERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHP  245 (474)
Q Consensus       166 ~ReGk~pLL~Gdl~v~L~~Gva~L~di~FTDnSsw~rSrKFRLgaRvv~~~~~g~RI~EAvsE~FvVkDhRge~~kKh~p  245 (474)
                      +|+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+||||||
T Consensus        78 ~r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p  157 (299)
T PF07887_consen   78 EREGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYP  157 (299)
T ss_pred             cCCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCCCcEEEEe--
Q 011961          246 PMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFR--  323 (474)
Q Consensus       246 P~L~DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~kly~y~--  323 (474)
                      |+|+|||||||+|||+|+|||+|+++||+||+|||+++++||++||+|||+|||++||++||+|||||++++++|+|+  
T Consensus       158 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~~~  237 (299)
T PF07887_consen  158 PSLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYYDE  237 (299)
T ss_pred             CCCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCceEEEEccceeeeeEEECCeEeeCCCCCHHhHHHHHHHHHHHHHhccccchhccccc
Q 011961          324 GHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRTYIENTVRQAYLNWRELEVAEGVLN  382 (474)
Q Consensus       324 ~~nv~L~FN~i~~lVGa~f~G~~~~~~~L~~~qk~~V~~Lk~~AYenw~~l~e~~~~~n  382 (474)
                      ++|++|+|||||+||||+|+|||++.++|++.||++|++|+++||+||++|+++|+.+.
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~~v~~Lv~~AY~n~~~l~e~d~~~~  296 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKAYVDKLVKQAYENWDNLEEYDGKML  296 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHHHHHHHHHHHHHhhhhheecccchh
Confidence            68999999999999999999999999999999999999999999999999999987653

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=89.62  E-value=0.45  Score=48.68  Aligned_cols=48  Identities=31%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             hhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCC
Q 011961          264 FHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (474)
Q Consensus       264 ~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~  316 (474)
                      .-++|+++||.||+||+..   +|..|.+++  ++|...++.+..||.+|...
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~   60 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPM   60 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            4488999999999999875   899999998  78999999999999998653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=87.45  E-value=0.7  Score=47.39  Aligned_cols=49  Identities=35%  Similarity=0.311  Sum_probs=43.1

Q ss_pred             hhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCC
Q 011961          263 AFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (474)
Q Consensus       263 ~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~  316 (474)
                      ..-++|+++||.||+||+..   ++..|.++.  |+|...++.+++.|+++...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            45589999999999998765   789999997  79999999999999998754

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=87.04  E-value=0.6  Score=48.64  Aligned_cols=60  Identities=32%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCC
Q 011961          252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (474)
Q Consensus       252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~  316 (474)
                      +-+|+.-|-.-..-++|+++||.||+||+..   ++..|.+++  ++|....+.+++||.+|...
T Consensus        28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~   87 (342)
T PLN03186         28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPL   87 (342)
T ss_pred             HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhccc
Confidence            4445443333334589999999999998875   788999998  78999999999999888654

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=82.97  E-value=1.3  Score=46.42  Aligned_cols=60  Identities=27%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961          251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (474)
Q Consensus       251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl  315 (474)
                      ++..|+.-|-.-..-++|.++||+||+|++..   ++..|-++.  |+|....+.+++.|++.+.
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~--g~s~~~~~ki~~~a~~~~~   89 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIK--GLSEAKVDKICEAAEKLLN   89 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence            35666554444446699999999999998765   688899987  7999999999999988764

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=82.83  E-value=1.1  Score=45.24  Aligned_cols=56  Identities=25%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhcc
Q 011961          252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV  314 (474)
Q Consensus       252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv  314 (474)
                      +..|.+||+.  .-++|.++||.|++|++.   .+++.|.+++  |++.+.++.+++-|+.++
T Consensus         8 l~~l~gIg~~--~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~--g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          8 LEDLPGVGPA--TAEKLREAGYDTVEAIAV---ASPKELSEAA--GIGESTAAKIIEAAREAA   63 (317)
T ss_pred             HhhcCCCCHH--HHHHHHHcCCCCHHHHHc---CCHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence            4455666644  568999999999999966   4899999999  678889999998887644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	474
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 65/533 (12%), Positives = 154/533 (28%), Gaps = 157/533 (29%)

Query: 2   AAKRFLNGSDPEEPP---EK-RTRTR-PSFASVIGEAVMVNSFQN-FFSALEPLLRRVVN 55
             ++F+               +T  R PS         M    ++  ++  +   +  V+
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPS-----MMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 56  -----EEVQRGVSKYNPCRSLTRS-------SSLRIQALEPSSLKLIFS----------- 92
                 ++++ + +  P +++          + + +       ++               
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 93  ----------QKLSL---PIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIEL 139
                     QKL     P +T S+     N  L+I  +      L+            L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CL 247

Query: 140 VVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLL-TGDVNVTARDGVAPIGDIE----- 193
           +VL         +    + + +  +  +     LL T    VT     A    I      
Sbjct: 248 LVLL--------NVQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 194 --FTDN------SSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDH--RGELYKKH 243
              T +        ++  R   +  +V   + + + I         ++D     + +K  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-----SIRDGLATWDNWKH- 349

Query: 244 HPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSI------VEPQRLRKILGPG 297
                     +L  I +  +    L  A  +  + F +LS+      +    L  ++   
Sbjct: 350 ------VNCDKLTTIIE--SSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILL-SLIWFD 398

Query: 298 MSEKMWEVTMQH-ARKCVM--GNKLYIFRGHNCIILLNPIC----QVVRAVINN----QT 346
           + +    V +    +  ++    K       +  + L         + R+++++    +T
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 347 YLTRDLTKL-NRTYI-----------ENT-----VRQAYLNWRELE-----------VAE 378
           + + DL       Y            E+       R  +L++R LE            + 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 379 GVLNEMALLTQGDLVDQYPNHNQSMIKPFQQNGSASDKSLD--VGFLVSSSTN 429
            +LN    L Q   +  Y  +          N    ++ ++  + FL     N
Sbjct: 519 SILN---TLQQ---LKFYKPY-------ICDNDPKYERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 70/310 (22%)

Query: 5   RFLNGSDPEEPPEKRTRTRPSFASVIGEAV--MVNSFQNFFSALEPLLRRVVNEEVQRGV 62
           ++L+    + P E  T T P   S+I E++   + ++ N+                    
Sbjct: 309 KYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNW-------------------- 347

Query: 63  SKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIF-TGSKIT---------DVENNP 112
            K+  C  LT      +  LEP+  + +F     L +F   + I          DV  + 
Sbjct: 348 -KHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 113 LQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRD--HWTPEEFESNIVKERTGK 170
           + +VV       L+        I I  + L+      +    H        +IV      
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVDHYNIP 456

Query: 171 RPLLTGDVNVTARDG--VAPIG----DIEFTDNSSWIRSR--KFR-IGAKVARGSYQGVR 221
           +   + D+     D    + IG    +IE  +  +  R     FR +  K+ R       
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWN 515

Query: 222 ICEAITDAFVVKDHRGELYKKH---HPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKT-VQ 277
              +I +   ++  +   YK +   + P  E  V  +        F  K+    I +   
Sbjct: 516 ASGSILN--TLQQLK--FYKPYICDNDPKYERLVNAILD------FLPKIEENLICSKYT 565

Query: 278 DFLKLSIVEP 287
           D L+++++  
Sbjct: 566 DLLRIALMAE 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	474
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	92.93
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	88.5
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	81.42

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=92.93  E-value=0.027  Score=44.93  Aligned_cols=62  Identities=27%  Similarity=0.426  Sum_probs=51.1

Q ss_pred             CCcceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh-ccCC
Q 011961          248 LEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK-CVMG  316 (474)
Q Consensus       248 L~DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~  316 (474)
                      +.|++-.|++|+..-  -++|.++||+||+|+..+   +++.|..|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~--~~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDL--AFKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHH--HHHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHH--HHHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            567788888777664  489999999999987654   778899987  7899999999999998 7553

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=88.50  E-value=0.39  Score=39.59  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             hhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHH
Q 011961          264 FHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQH  309 (474)
Q Consensus       264 ~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~H  309 (474)
                      .-++|.+++|.||+||+.   .|+.+|.+++|  +|-+.=-.+..|
T Consensus        16 ~~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r~   56 (83)
T 2kz3_A           16 MIQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRRV   56 (83)
T ss_dssp             HHHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHHH
Confidence            348899999999999975   69999999994  565554444443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=81.42  E-value=0.56  Score=45.01  Aligned_cols=59  Identities=25%  Similarity=0.240  Sum_probs=44.4

Q ss_pred             cceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961          250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (474)
Q Consensus       250 DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl  315 (474)
                      +++..|++|+..  .-++|.++||+||+||+.+   ++..|-++.  |+|.+.=+.+++.|+.+..
T Consensus         3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~   61 (322)
T 2i1q_A            3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD   61 (322)
T ss_dssp             --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred             ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence            456677755544  6699999999999999854   577787776  6788877788888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	474
d1zeta2	273	e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom	7e-04
d1jx4a2	240	e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul	8e-04
d1b22a_	70	a.60.4.1 (A:) DNA repair protein Rad51, N-terminal	0.002

>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKI-GKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLR 291
           K ++  +        L   +  +++I G      K L A GI +V+D    S   P+ L 
Sbjct: 188 KPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFS---PKILE 244

Query: 292 KILGPGMSEKMWE 304
           K LG  +++++ +
Sbjct: 245 KELGISVAQRIQK 257

>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DinB homolog (DBH)
species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 232 VKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLR 291
           +K    E  K+    +   +V      G      +KL   GI  + D L +      +L+
Sbjct: 163 IKVIDDEEVKRLIRELDIADVP-----GIGNITAEKLKKLGINKLVDTLSIE---FDKLK 214

Query: 292 KILGPGMSEKMWEV 305
            ++G   ++ +  +
Sbjct: 215 GMIGEAKAKYLISL 228

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV-MG 316
           KKL  AG  TV+          + L  I   G+SE   +  +  A K V MG
Sbjct: 24  KKLEEAGFHTVEAVAYAP---KKELINI--KGISEAKADKILAEAAKLVPMG 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	474
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	90.0

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.00  E-value=0.075  Score=39.97  Aligned_cols=52  Identities=25%  Similarity=0.281  Sum_probs=43.1

Q ss_pred             eecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961          257 KIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (474)
Q Consensus       257 kIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl  315 (474)
                      +||...  -++|.++|++||++..   +..++.|-+|-  |++.+.=+.+++-|++++.
T Consensus        10 Gig~~~--~~kL~~aG~~Tve~ia---~~t~~~L~~i~--Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMAD--VKKLRESGLHTAEAVA---YAPRKDLLEIK--GISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHH--HHHHHTTSCCSHHHHH---HSCSHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHH--HHHHHHcCCCcHHHHH---hCCHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence            555554  4899999999999874   46778898886  7999999999999998765