Citrus Sinensis ID: 011970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 474 | ||||||
| 449449823 | 474 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.991 | 0.904 | 0.0 | |
| 449510979 | 477 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.985 | 0.898 | 0.0 | |
| 255557887 | 470 | conserved hypothetical protein [Ricinus | 0.987 | 0.995 | 0.902 | 0.0 | |
| 297820156 | 467 | hypothetical protein ARALYDRAFT_906825 [ | 0.981 | 0.995 | 0.870 | 0.0 | |
| 18410015 | 467 | transducin/WD40 domain-containing protei | 0.981 | 0.995 | 0.865 | 0.0 | |
| 224139426 | 473 | predicted protein [Populus trichocarpa] | 0.991 | 0.993 | 0.869 | 0.0 | |
| 297736651 | 464 | unnamed protein product [Vitis vinifera] | 0.974 | 0.995 | 0.863 | 0.0 | |
| 224069828 | 471 | predicted protein [Populus trichocarpa] | 0.983 | 0.989 | 0.866 | 0.0 | |
| 225448335 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.975 | 0.847 | 0.0 | |
| 147825153 | 481 | hypothetical protein VITISV_027347 [Viti | 0.991 | 0.977 | 0.847 | 0.0 |
| >gi|449449823|ref|XP_004142664.1| PREDICTED: uncharacterized protein LOC101207987 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/472 (90%), Positives = 449/472 (95%), Gaps = 2/472 (0%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD--ELGS 422
YITSDQDLIISYCKA+ +D WM G+AGSIN+S+ILTGKCLAKINA+N +PKV+D S
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGSINISNILTGKCLAKINASNGNPKVNDSSSSSS 422
Query: 423 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
SS G S+K+ SS +R+TV EALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 423 SSAGSSRKVCNSSQMRNTVAEALEDITALFYDEERNEIYTGNKNGLVHVWSN 474
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510979|ref|XP_004163828.1| PREDICTED: uncharacterized protein LOC101230142 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/475 (89%), Positives = 450/475 (94%), Gaps = 5/475 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE----- 419
YITSDQDLIISYCKA+ +D WM G+AGSIN+S+ILTGKCLAKINA+N +PKV+D+
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGSINISNILTGKCLAKINASNGNPKVNDDSSSSS 422
Query: 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
SSS G S+K+ SS +R+TV EALEDIT+LFYDEERNEIYTGN++GLVHVWSN
Sbjct: 423 SSSSSAGSSRKVCNSSQMRNTVAEALEDITALFYDEERNEIYTGNKNGLVHVWSN 477
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557887|ref|XP_002519972.1| conserved hypothetical protein [Ricinus communis] gi|223540736|gb|EEF42296.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/470 (90%), Positives = 443/470 (94%), Gaps = 2/470 (0%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISA+PRPCSGRRVLAKKR RS+G +N+VKKLQRREI SK DRAF++SNAQERFRNM
Sbjct: 3 GRRISANPRPCSGRRVLAKKRQRSNGLMNTVKKLQRREISSKPDRAFTMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN+RICFL
Sbjct: 63 LKEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI+RGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIKRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424
YITSDQDLIISYCKAE E+QWMEGSAGSIN+S+ILTGKCLAKINA N PK + SSS
Sbjct: 363 YITSDQDLIISYCKAETEEQWMEGSAGSINISNILTGKCLAKINAGNGGPKGGECSSSSS 422
Query: 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
G SK+ S +RSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 IGCSKQ--SCSSMRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 470
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820156|ref|XP_002877961.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] gi|297323799|gb|EFH54220.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/470 (87%), Positives = 435/470 (92%), Gaps = 5/470 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRRV+AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRVVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ SS
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKEDESSSSSC 422
Query: 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
GK+ K R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 LGKNSKQR-----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18410015|ref|NP_566994.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown protein [Arabidopsis thaliana] gi|16226834|gb|AAL16275.1|AF428345_1 AT3g54190/F24B22_150 [Arabidopsis thaliana] gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis thaliana] gi|332645676|gb|AEE79197.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/470 (86%), Positives = 435/470 (92%), Gaps = 5/470 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK D+ S+
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKDDESSSSNC 422
Query: 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
GK+ K R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 MGKNSKQR-----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139426|ref|XP_002323106.1| predicted protein [Populus trichocarpa] gi|222867736|gb|EEF04867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/476 (86%), Positives = 440/476 (92%), Gaps = 6/476 (1%)
Query: 1 MEGLGRRISAS-PRPCSGRRVLA-KKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQE 58
MEG GRRISA+ PRPCSGRR+LA KKR RSDGF+NSVKKLQRREI SK DR+FSI+NAQE
Sbjct: 2 MEGSGRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKSDRSFSITNAQE 61
Query: 59 RFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 118
RFRNM L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN
Sbjct: 62 RFRNMRLMEEYDTHDPKGHCSMVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 121
Query: 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178
+RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GF
Sbjct: 122 QRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFP 181
Query: 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI 238
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD VQEIKISPGI
Sbjct: 182 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDTDVQEIKISPGI 241
Query: 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298
MLLI NRSS +VPLKILSIEDGT+LK F HLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 242 MLLILNRSSGYVPLKILSIEDGTILKDFKHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 301
Query: 299 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 358
DVR+ + EVSRT+FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 302 DVRHTGIREVSRTDFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 361
Query: 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418
CNTNNIYITSDQDLIISYCKA+ +DQWMEG+AGSIN+S+ILTGKCLAKINATN SPK ++
Sbjct: 362 CNTNNIYITSDQDLIISYCKADSDDQWMEGNAGSINISNILTGKCLAKINATNGSPKDEE 421
Query: 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
S+ + K +L +RSTV ALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 CSSSTGSSKQSRL----MMRSTVAAALEDITALFYDEERNEIYTGNRHGLVHVWSN 473
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736651|emb|CBI25522.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/470 (86%), Positives = 434/470 (92%), Gaps = 8/470 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P +++E +
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFP-MENECSCTH 421
Query: 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
S+ IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 ASASR-------IRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069828|ref|XP_002326424.1| predicted protein [Populus trichocarpa] gi|222833617|gb|EEE72094.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/472 (86%), Positives = 436/472 (92%), Gaps = 6/472 (1%)
Query: 5 GRRISAS-PRPCSGRRVLA-KKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRN 62
GRRISA+ PRPCSGRR+LA KKR RSDGF+NSVKKLQRREI SK DR+FSI+NAQERFRN
Sbjct: 4 GRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKPDRSFSITNAQERFRN 63
Query: 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRIC 122
M L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAA+DI+FALAHSGVCAAFSR TN RIC
Sbjct: 64 MRLMEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAAQDIIFALAHSGVCAAFSRVTNHRIC 123
Query: 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182
FLN SPDEVI SLFYNKNNDS+ITVSVYASDNFSSLKCRST+IEYIRRG PD+GFALFES
Sbjct: 124 FLNASPDEVILSLFYNKNNDSVITVSVYASDNFSSLKCRSTRIEYIRRGNPDAGFALFES 183
Query: 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLI 242
ESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK VQEIKISPGIMLLI
Sbjct: 184 ESLKWPGFVEFDDVNGKVLTYSAQDSMYKVFDLKNYTMLYSISDKDVQEIKISPGIMLLI 243
Query: 243 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302
NRSSS+VPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR+
Sbjct: 244 LNRSSSYVPLKILSIEDGTILKDFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRH 303
Query: 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTN 362
+ EVSRTEF+TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW PDCNTN
Sbjct: 304 TGIREVSRTEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWRPDCNTN 363
Query: 363 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 422
N YITSDQDLIISYCKAE +DQWMEG+ GSIN+S+ILTGKCLAKINATN SPK DE
Sbjct: 364 NTYITSDQDLIISYCKAESDDQWMEGNGGSINISNILTGKCLAKINATNGSPK--DEECC 421
Query: 423 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
SSTG SK+ S ++STV EALEDIT+LFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 422 SSTGSSKQ--SCSLMKSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448335|ref|XP_002266566.1| PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/479 (84%), Positives = 434/479 (90%), Gaps = 9/479 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 63
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 64 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 123
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 124 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 183
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 184 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 243
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 244 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 303
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 304 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 363
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD------ 418
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P ++
Sbjct: 364 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECSCSSN 423
Query: 419 ---ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
S + + +S IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 424 FSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825153|emb|CAN75497.1| hypothetical protein VITISV_027347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/479 (84%), Positives = 434/479 (90%), Gaps = 9/479 (1%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD------ 418
YITSDQDLIISYCKA+ +D EG+AGSIN+S+ILTGKCLAKI A+N P ++
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECSCSSN 422
Query: 419 ---ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
S + + +S IRSTV EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 423 FSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 474 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.981 | 0.995 | 0.861 | 5.7e-217 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.976 | 0.991 | 0.828 | 2.8e-208 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2096 (742.9 bits), Expect = 5.7e-217, P = 5.7e-217
Identities = 405/470 (86%), Positives = 430/470 (91%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXXX 424
YITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI ++ PK DDE
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPK-DDESSSSN 421
Query: 425 XXXXXXXXXXXYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
R+ V EALEDIT+LFYDEERNEIYTGNRHGLVHVWSN
Sbjct: 422 CMGKNSKQR----RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2014 (714.0 bits), Expect = 2.8e-208, P = 2.8e-208
Identities = 390/471 (82%), Positives = 423/471 (89%)
Query: 5 GRRISASPRPCSG-RRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNM 63
GRRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREI S+ DRAFSIS AQERFRNM
Sbjct: 4 GRRIIANPRPCSGSRRVIAKKRSRPDGFVNSVKKLQRREISSRMDRAFSISTAQERFRNM 63
Query: 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF 123
LVE+YDTHDPKG+C LP L+KR+KVIEIVAARDIVFAL SGVCA+FSRETN+++CF
Sbjct: 64 RLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCF 123
Query: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183
LNVSPDEVIRSLFYNKNNDSLITVSVYASDN+SSLKCRST+IEYI RG+ D+GF LFESE
Sbjct: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESE 183
Query: 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF 243
SLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDK+VQEIKISPGIMLLIF
Sbjct: 184 SLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIMLLIF 243
Query: 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
R++SHVPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA
Sbjct: 244 KRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
Query: 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 363
EL+EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNN
Sbjct: 304 ELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNN 363
Query: 364 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEXXXX 423
IYITSDQDLIISYCKA+ EDQW+EG+AGSIN+S+ILTGKCLAKI A N PK +D
Sbjct: 364 IYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKIKANNGPPKEEDCSSSD 423
Query: 424 XXXXXXXXXXXXYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474
RS V EALEDIT+LFYDEERNEIYTGNRHGL+HVWSN
Sbjct: 424 LGNSSRR-------RSAVAEALEDITALFYDEERNEIYTGNRHGLLHVWSN 467
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 474 458 0.00095 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 617 (66 KB)
Total size of DFA: 286 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.02u 0.19s 39.21t Elapsed: 00:00:02
Total cpu time: 39.02u 0.19s 39.21t Elapsed: 00:00:02
Start: Tue May 21 01:58:05 2013 End: Tue May 21 01:58:07 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_502529.1 | annotation not avaliable (467 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.81 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.77 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.75 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.75 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.68 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.64 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.63 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.59 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.55 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.53 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.51 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.5 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.48 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.46 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.45 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.44 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.43 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.43 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.4 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.39 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.39 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.34 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.34 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.32 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.31 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.31 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.3 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.27 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.24 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.23 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.2 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.13 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.09 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.0 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.98 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.95 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.94 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.93 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.86 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.85 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.84 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.77 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.74 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.74 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.71 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.69 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.64 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.62 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.57 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.56 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.53 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.51 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.45 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.41 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.41 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.39 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.38 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.33 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.27 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.26 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.21 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.11 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.11 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.01 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.96 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.93 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.89 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.83 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.77 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.76 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.74 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.73 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.69 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.69 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.65 | |
| PRK10115 | 686 | protease 2; Provisional | 97.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.52 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.43 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.41 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.29 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.27 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.26 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.26 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.25 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.25 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.24 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.24 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.13 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.98 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.88 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.88 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.84 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.81 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.61 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.6 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.59 | |
| PRK10115 | 686 | protease 2; Provisional | 96.57 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.37 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.11 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.05 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.98 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.97 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.93 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.76 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.72 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.62 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.54 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.54 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.32 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.21 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.13 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.11 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.05 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.04 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.93 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.91 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.71 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 94.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.17 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.73 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.61 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.51 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.37 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.36 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.34 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 93.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.14 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.78 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.13 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 91.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 90.71 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.27 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 90.02 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.81 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 89.78 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 89.64 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.31 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 88.29 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.2 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.19 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 88.17 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.63 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 87.46 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.42 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 87.38 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 86.63 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 86.49 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 86.42 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.22 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 86.21 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 86.2 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.52 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 85.02 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 84.29 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 83.1 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.61 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.29 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 81.95 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 81.5 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 81.45 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 80.92 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 80.43 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.42 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-53 Score=424.21 Aligned_cols=321 Identities=13% Similarity=0.198 Sum_probs=291.3
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..+|.++.|+ +..||+||-|.|+|+||..|-..+.|..| |.++|-+|++||||+.|||++ .| .+|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~----~d------g~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGS----KD------GSI 181 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccc----cC------CeE
Confidence 388889999999 89999999999999999999999999997 889999999999999999965 55 699
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeC----CCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG 237 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~----~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg 237 (474)
+|||.++|++... +|- +|.+||.+++|-| |..++|||+|-|++|+|||++.|+|++++.+ ..|.+|.+-.+
T Consensus 182 ~lwdpktg~~~g~-~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 182 RLWDPKTGQQIGR-ALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EEecCCCCCcccc-ccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 9999999997542 333 3578999998864 4678999999999999999999999999975 57999999877
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe-----------------------------------cC
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------------------QF 282 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~-----------------------------------~~ 282 (474)
+.++++ |.|+|||+|+..+|.++.+|+||.|+|+.++.+. +.
T Consensus 259 gliySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 259 GLIYSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ceEEec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 877765 6699999999999999999999999999999871 22
Q ss_pred CCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCC
Q 011970 283 NEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~ 359 (474)
+|.|+++++|.|+-+|+... .+++..+.||+.-|..+.||||++++||+| |..|||||.+ |+.+.+|.||-..
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~---- 411 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA---- 411 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce----
Confidence 45799999999999999654 558888999999999999999999999999 9999999995 9999999999987
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
|..|++|.|.++|+|||+ |.|+|+||+.|.+....|.||.+
T Consensus 412 -VYqvawsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D--------------------------- 452 (480)
T KOG0271|consen 412 -VYQVAWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD--------------------------- 452 (480)
T ss_pred -eEEEEeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc---------------------------
Confidence 689999999999999988 99999999999999999999996
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|.+||||+.++||+.|..+|||.
T Consensus 453 -------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 -------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------eEEEEEecCCCceeecCCCceEEEeec
Confidence 899999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=393.65 Aligned_cols=301 Identities=14% Similarity=0.121 Sum_probs=253.9
Q ss_pred cccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCC
Q 011970 49 RAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSP 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~ 128 (474)
++-++..+.+.+.++-|--.=-.-+.|...|.|.++ +++||++|-+|+||+|+..+.+.+++|.| |
T Consensus 151 ~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~d-------------s~~laT~swsG~~kvW~~~~~~~~~~l~g-H 216 (459)
T KOG0272|consen 151 KALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRD-------------SKHLATGSWSGLVKVWSVPQCNLLQTLRG-H 216 (459)
T ss_pred hhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecC-------------CCeEEEeecCCceeEeecCCcceeEEEec-c
Confidence 344555555555555554222223344455555555 78888888888888888887777777776 4
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEEEecCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQD 207 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS~s~D 207 (474)
.+ .++.+.|+|. ++..|||||.|
T Consensus 217 ~~--------------------------------------------------------~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 217 TS--------------------------------------------------------RVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cc--------------------------------------------------------ceeeEEEccCCCccceeeeccC
Confidence 22 2235667655 47789999999
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|++|+|++.+-++|..|.+ ..|-.|+|+| |.+|+++ +.|.|-+|||++|++.+.-.+||...|++++|. |||.
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~DGS 316 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-PDGS 316 (459)
T ss_pred CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhcccccccceeEec-CCCc
Confidence 9999999998888888864 5799999998 6777665 779999999999999999999999999999997 5666
Q ss_pred eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCee
Q 011970 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 362 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~ 362 (474)
.+++|+.|..-||||+++|.|+-+|.||...|.+|+|||+|..|||++ |+|+||||++ -.++.++.+|.+- |.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-----VS 391 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-----VS 391 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-----hh
Confidence 666688999999999999999999999999999999999999999999 9999999997 6789999999987 68
Q ss_pred EEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 363 NIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 363 svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
.|.|+| -|++|+|+|. |+|+|||.-.+++|+++|.||.+
T Consensus 392 ~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~----------------------------- 431 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG----------------------------- 431 (459)
T ss_pred heEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc-----------------------------
Confidence 899999 7999999987 99999999999999999999996
Q ss_pred cccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 442 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.+|.++|||+.|+|+|.|.|+|||.
T Consensus 432 -----kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 -----KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----ceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=381.42 Aligned_cols=285 Identities=15% Similarity=0.221 Sum_probs=252.6
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~ 196 (474)
.+|-..+.| |.+.|-|+.|+|+|..|+|+| .| .|+||||+.+..+ +|+. +|-.|+-+|+++ |
T Consensus 105 trCssS~~G-H~e~Vl~~~fsp~g~~l~tGs----GD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-P 167 (480)
T KOG0271|consen 105 TRCSSSIAG-HGEAVLSVQFSPTGSRLVTGS----GD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-P 167 (480)
T ss_pred ceeccccCC-CCCcEEEEEecCCCceEEecC----CC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-C
Confidence 456778997 889999999999999999955 56 7999999877664 5655 478899999998 8
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEE-EEEc--CCcEEEEEEcC------CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKISP------GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l-~tl~--~~~V~~vafSp------g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
||+.||||+.||+|++||.++|+++ .+|. ..+|.+++|-| ..+||++ +.|++|+|||+.-|+|+.++.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec
Confidence 9999999999999999999999976 4665 46899999986 2445544 568999999999999999999
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc-----------C-------------
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------Y------------- 323 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs-----------p------------- 323 (474)
+|+..|.+|.+- ..+.|.+++.|+|||+|+...|.|.+.++||..+|..++.| |
T Consensus 245 gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 245 GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999984 13567778999999999999999999999999999999987 2
Q ss_pred ------------CCcEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 324 ------------ENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 324 ------------dg~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.+..|+|+| |.|+-||+- . -++++.+.||+.- ||.|+|||||++|||+|.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF---------- 387 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF---------- 387 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec----------
Confidence 234599999 999999998 3 6799999999986 799999999999999998
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
|.+|||||-.|||.+++|+||-. .|+.|++|.|.+.|+|||.|.|
T Consensus 388 -DkSVkLW~g~tGk~lasfRGHv~----------------------------------~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 388 -DKSVKLWDGRTGKFLASFRGHVA----------------------------------AVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred -ccceeeeeCCCcchhhhhhhccc----------------------------------eeEEEEeccCccEEEEcCCCce
Confidence 99999999999999999999985 8999999999999999999999
Q ss_pred EEEccC
Q 011970 469 VHVWSN 474 (474)
Q Consensus 469 VklWd~ 474 (474)
+|+|+.
T Consensus 433 LKvw~V 438 (480)
T KOG0271|consen 433 LKVWDV 438 (480)
T ss_pred EEEEEe
Confidence 999984
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=340.17 Aligned_cols=281 Identities=17% Similarity=0.250 Sum_probs=249.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
-|.| |...|+.|-|.|+--..+++| +| .++++||..+|++..+ |-+ |...+..|+|+ .-|++||
T Consensus 103 ~l~g-~r~~vt~v~~hp~~~~v~~as----~d------~tikv~D~~tg~~e~~--LrG--Ht~sv~di~~~-a~Gk~l~ 166 (406)
T KOG0295|consen 103 KLAG-HRSSVTRVIFHPSEALVVSAS----ED------ATIKVFDTETGELERS--LRG--HTDSVFDISFD-ASGKYLA 166 (406)
T ss_pred hhhc-cccceeeeeeccCceEEEEec----CC------ceEEEEEccchhhhhh--hhc--cccceeEEEEe-cCccEEE
Confidence 3455 778899999999887666654 77 7999999999998554 333 34557799998 7899999
Q ss_pred EecCCCcEEEeecCC-CeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 203 YSAQDSIYKVFDLKN-YTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 203 S~s~D~tiKlWdl~t-g~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
++|.|=.+++||..+ ++|+++++ .+.|.+|+|-| |..+++. +.|.+||.|++.||.|+++|.+|..+|+-|+-
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~---srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC---SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec---ccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999999999986 77888876 46899999998 8888765 66899999999999999999999999999996
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC---------------CCcEEEEEc-CCcEEEEeCC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---------------ENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp---------------dg~llaS~s-D~tIklWd~~ 342 (474)
. +||..+++++.|.+|++|=+.+++|...+++|.+.|..++|-| .||.+.++| |+|||+||+.
T Consensus 244 ~-~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 244 N-QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred c-CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 5 5555555678999999999999999999999999999999854 358999999 9999999995
Q ss_pred -CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 343 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 343 -G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
|.||-||.||..| |.+++|+|-|+||+|+.. |+|+|+||+.+++|+.++++|+.
T Consensus 323 tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h--------- 377 (406)
T KOG0295|consen 323 TGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH--------- 377 (406)
T ss_pred CCeEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc---------
Confidence 9999999999999 789999999999999876 99999999999999999999996
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-|+++.|.-+-.+++||+-|.++|+|.
T Consensus 378 -------------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 -------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -------------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=318.59 Aligned_cols=285 Identities=12% Similarity=0.157 Sum_probs=253.0
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE
Q 011970 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (474)
Q Consensus 122 ~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L 201 (474)
++|.| |.+.|.++-|++|.+.|+|+|.| ..+-|||--+..-...+||- ..||-.+||+ |.|+.+
T Consensus 49 r~LkG-H~~Ki~~~~ws~Dsr~ivSaSqD----------GklIvWDs~TtnK~haipl~----s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKG-HLNKIYAMDWSTDSRRIVSASQD----------GKLIVWDSFTTNKVHAIPLP----SSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecc-cccceeeeEecCCcCeEEeeccC----------CeEEEEEcccccceeEEecC----ceeEEEEEEC-CCCCeE
Confidence 68887 88999999999999999998744 46779998776654433433 4599999998 799999
Q ss_pred EEecCCCcEEEeecCCC------eEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 202 TYSAQDSIYKVFDLKNY------TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg------~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
|.|+-|...-|+++++- ..-+.+. ...+.++.|-+++.|+++ |+|.|.-|||||+|+.++.|.||.+-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999854 2334454 457999999998888886 679999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 351 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g 351 (474)
.++++.|.++..+++++-|++.+|||++.+.|.+++.||...|.+|.|-|+|.-|+|+| |+|.+++|++ .+.+..|+
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys- 268 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS- 268 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence 99999865778888899999999999999999999999999999999999999999999 9999999997 88888888
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|..- +|.|++|+||-.|++|.+|.. |.++++||...|+-+.+|.||.+
T Consensus 269 ~~~~--~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN------------------- 316 (343)
T KOG0286|consen 269 HDSI--ICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN------------------- 316 (343)
T ss_pred cCcc--cCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC-------------------
Confidence 4332 367999999999999999876 99999999999999999999997
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|..+|||--++|||.|.++|||.
T Consensus 317 ---------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 ---------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=312.19 Aligned_cols=295 Identities=13% Similarity=0.172 Sum_probs=234.7
Q ss_pred eeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc--eeeeccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA--LFESESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~--lf~~~~~~~~~~V~Fs~~ 196 (474)
..-+|+| |++.|.+++..+.+. .|.++| -| .++-+|++..-....+.+ .|+. |-..+..|+.+ +
T Consensus 7 l~~tl~g-h~d~Vt~la~~~~~~~~l~sas----rD------k~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEG-HTDWVTALAIKIKNSDILVSAS----RD------KTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLS-S 73 (315)
T ss_pred eeeeecC-CCceEEEEEeecCCCceEEEcc----cc------eEEEEEEeccCccccCceeeeeec-cceEecceEEc-c
Confidence 3458887 779999999999854 555544 55 688899874433322222 3332 33344578898 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec--Ccc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LHR 272 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h--~~~ 272 (474)
||++..|+|.|+++|+||+++|++...| |...|.+|+|||+..-+++ +|.|+||||||+. |+|..++..+ ..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivS--GSrDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVS--GSRDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeec--CCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence 9999999999999999999999876655 4568999999985444443 3679999999985 5777777644 689
Q ss_pred eeEEEEEecC-CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 273 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 273 v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
|..|.|+|.. +-.|+++++|+|+|+||+++-++...+.||+..++.+++||||.+.++|. |+.+-|||++ |+++.+|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 9999999643 45777789999999999999999999999999999999999999999999 9999999995 9999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
++... |++++|+|+--.|+-+- +..|||||+.++.|+.+|+-.-..|..+
T Consensus 231 ~a~~~------v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~------------ 280 (315)
T KOG0279|consen 231 EAFDI------VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGIGPSSK------------ 280 (315)
T ss_pred cCCCe------EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhccccccccccc------------
Confidence 85542 89999999988888654 6779999999999999986543211000
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...+ .-.+|+||+||++|.+|-.|+.|++|.
T Consensus 281 ---------~~~~----~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 281 ---------AGDP----ICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ---------cCCc----EEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 0111 567899999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=339.95 Aligned_cols=235 Identities=16% Similarity=0.163 Sum_probs=217.7
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC--c-eEEEEecCCCCccEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG--I-MLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg--~-~la~~s~~s~D~tIkLWdi~t 259 (474)
.+.+.+++|| .|++.||+||.+|++|||+..++..+.+|.+ ..|-++.|+|+ + .+|++ +.|+++|||++.+
T Consensus 175 ~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~---s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 175 TRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA---SADGTVKLWKLSQ 250 (459)
T ss_pred CCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee---ccCCceeeeccCC
Confidence 3456678998 7999999999999999999999999999875 57999999995 2 55654 6699999999998
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
-++|..|+||..+|-.|+|. |+|..|++++.|.|-+|||+.++..+-..+||...|..++|.|||-+++||+ |.+-+|
T Consensus 251 e~~l~~l~gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred Ccchhhhhcchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 89999999999999999998 7799999999999999999999998888899999999999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
||++ |.|+-.|+||... |.+|+|||+|..||+||. |+|+||||+.--+++.++.+|++
T Consensus 330 WDlRtgr~im~L~gH~k~-----I~~V~fsPNGy~lATgs~-----------Dnt~kVWDLR~r~~ly~ipAH~n----- 388 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKE-----ILSVAFSPNGYHLATGSS-----------DNTCKVWDLRMRSELYTIPAHSN----- 388 (459)
T ss_pred eecccCcEEEEecccccc-----eeeEeECCCceEEeecCC-----------CCcEEEeeecccccceecccccc-----
Confidence 9995 9999999999987 689999999999999876 99999999999999999999997
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtVklWd~ 474 (474)
-|+.|-|+| .|.+|+|+|.|+|+|||..
T Consensus 389 -----------------------------lVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 389 -----------------------------LVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -----------------------------hhhheEecccCCeEEEEcccCcceeeecC
Confidence 899999999 8899999999999999963
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=290.00 Aligned_cols=284 Identities=17% Similarity=0.270 Sum_probs=242.6
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~ 200 (474)
+++|.+ |.+.|.++.|+|+++.|++++ .+ ..+.+|++..++.... +. .+...+..+.|+ |+++.
T Consensus 2 ~~~~~~-h~~~i~~~~~~~~~~~l~~~~----~~------g~i~i~~~~~~~~~~~---~~-~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKG-HTGGVTCVAFSPDGKLLATGS----GD------GTIKVWDLETGELLRT---LK-GHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcc-cCCCEEEEEEcCCCCEEEEee----cC------cEEEEEEeeCCCcEEE---Ee-cCCcceeEEEEC-CCCCE
Confidence 456775 779999999999999999865 34 6899999988875221 21 123344589998 78999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
|++++.|++|++||+.+++.+..+.. ..|.+++|+|++.+++++ +.|+.|++||+.+++++..+..|...+..++|
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS--SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 99999999999999999887777753 479999999865444442 34789999999999999999988888999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCc
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 356 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~ 356 (474)
.+ ++..+++++.|+.|++||+++++++..+..|...+.++.|+|+++.+++++ |+.|++||++ ++++..+++|...
T Consensus 144 ~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 221 (289)
T cd00200 144 SP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG- 221 (289)
T ss_pred cC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc-
Confidence 84 455555556699999999999999999889999999999999998888888 9999999996 9999999888875
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
+..++|+|+++++++++. |+.|++||+.+++++..+.+|..
T Consensus 222 ----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~------------------------ 262 (289)
T cd00200 222 ----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN------------------------ 262 (289)
T ss_pred ----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC------------------------
Confidence 689999999999999875 99999999999999999998875
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.++.|+|+++.|++++.|+.|++|+
T Consensus 263 ----------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 ----------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=350.85 Aligned_cols=316 Identities=16% Similarity=0.185 Sum_probs=248.4
Q ss_pred CCeEEeeeccccceeeEeecC----CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC---Cccce
Q 011970 107 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFAL 179 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~---~~~~l 179 (474)
+|.|++|+..+-+....+..+ |.+.|.+++|+|+|+.||+++ .| ++++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC------CEEEEEECCcccccccccccce
Confidence 788999998865554444422 788999999999999999976 55 69999997532110 00111
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-C-ceEEEEecCCCCccEEEE
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-G-IMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g-~~la~~s~~s~D~tIkLW 255 (474)
........+..++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| + ..|+++ +.|++|+||
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iW 603 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLW 603 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEE
Confidence 2211123455789987778999999999999999999999888875 46799999996 4 456665 568999999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
|+.+|+++.++.++ ..+..+.|.++++..+++++.|++|++||+++++ .+.++.+|...|..+.|+ ++.+|+|++ |
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 99999999999865 5789999987778888889999999999999876 567788999999999997 677888988 9
Q ss_pred CcEEEEeCC-------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 334 RTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 334 ~tIklWd~~-------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
++|+|||++ ++++.+|.+|... ++.++|+|+|++||+|+. |++|+||+..+++.+..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLS 745 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEE
Confidence 999999984 3688999999876 688999999999999987 99999999877765544
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.-....+ ...+ ....+.+.|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 746 ~~~~~~~~-------------------~~~~--~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDP-------------------VSGL--EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCc-------------------cccc--ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 32211000 0000 01122347999999999999999999999999985
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=321.62 Aligned_cols=278 Identities=13% Similarity=0.144 Sum_probs=242.3
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.++++|..|.|- .-++|++++|+|+++||..||++...|+| |.+.|.+|+|..-|+.||++|. | -++
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSs----D------l~~ 174 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSS----D------LSA 174 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCC----c------cch
Confidence 388999999998 77889999999999999999999999998 6677999999999999999873 3 238
Q ss_pred EEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceE
Q 011970 164 KIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIML 240 (474)
Q Consensus 164 ~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~l 240 (474)
++||... -++.. .+..+++. +-+|.|- |.|.+|+|++.|.|||.|++.||-|++++.+ ++|..|+.+-+++|
T Consensus 175 ~LWd~~~~~~c~k--s~~gh~h~--vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIK--SLIGHEHG--VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHH--HhcCcccc--eeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE
Confidence 8999643 22222 24444433 3389998 7999999999999999999999999999975 69999999966655
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC---------C-----CeEEEEeCCCcEEEEECCCCceE
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF---------N-----EKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~---------~-----~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..+ ++.|.+|++|-+++++|...|+.|.+.+..|+|.+.. + ..+.+++.|+|||+||+.+|.|+
T Consensus 250 ~As--~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 250 IAS--CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred EEe--cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 544 4779999999999999999999999999999996421 1 36667899999999999999999
Q ss_pred EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 307 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 307 ~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
-++.||..+|+.++|+|.|++|+|.. |+|+++||++ ++|..+++.|... |+++.|..+--+++||+-
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsV------ 396 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSV------ 396 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccc------
Confidence 99999999999999999999999999 9999999995 9999999999987 789999999999999987
Q ss_pred cccCCCCeEEEEe
Q 011970 385 WMEGSAGSINVSS 397 (474)
Q Consensus 385 ~~~s~DgtIklWd 397 (474)
|+++|+|.
T Consensus 397 -----dqt~KvwE 404 (406)
T KOG0295|consen 397 -----DQTVKVWE 404 (406)
T ss_pred -----cceeeeee
Confidence 99999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=331.60 Aligned_cols=287 Identities=17% Similarity=0.252 Sum_probs=247.8
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccceeeeccccCceEEEEeCCCC
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.+++.+.+...|.++.|+|||+.|++++ -+ ..+++|+...++ +.. .+ .+|...|..++|+ |||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~----~~------~~i~~~~~~~~~~~~~~--~l--~~h~~~v~~~~fs-~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAAS----SD------GLIRIWKLEGIKSNLLR--EL--SGHTRGVSDVAFS-PDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEcc----CC------CcEEEeecccccchhhc--cc--cccccceeeeEEC-CCC
Confidence 4556665578899999999999998865 34 588999986666 322 12 2456678899998 799
Q ss_pred eEEEEecCCCcEEEeec-CCCeEEEEEcC--CcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCccee
Q 011970 199 KVLTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl-~tg~~l~tl~~--~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
++|++++.|++|||||+ ..+.+++++.+ ..|.+++|+|.+ +++++ +.|++|||||+++|+|+.+|.+|.+.+.
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999999 67799999975 579999999854 55544 6799999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCc--eEEeccccCCc--eEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~h~~~--v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
.++|. +++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|++++++. |+++++||+. +.++.+
T Consensus 293 ~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 293 GLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99997 678888889999999999999999 77887776655 89999999999999999 9999999996 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC-CCCCCCccccCCCCCCc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVDDELGSSSTGK 427 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH-~~~~~~~~~~~~~~~~~ 427 (474)
+.+|..-+ .| ..+..++++|++|.||+. |++|.+||+.++..+..+++| ..
T Consensus 372 ~~~~~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~~--------------- 423 (456)
T KOG0266|consen 372 YTGHSNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSKA--------------- 423 (456)
T ss_pred ecccCCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCCC---------------
Confidence 99998753 23 355666999999999987 999999999999999999999 53
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEc--CCCcEEEcc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWS 473 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs--~DgtVklWd 473 (474)
.|..++++|..+++++++ .|+.|++|.
T Consensus 424 -------------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 424 -------------------AVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred -------------------ceeccccCCCcCeeeecCcCCCceEEEec
Confidence 788999999999999999 899999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=341.73 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=191.9
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEE------EEEcCCcEEEEEEcC-C-ceEEEEecCCCCccEEEEecCCCe-----EE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTML------YSISDKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGT-----VL 263 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l------~tl~~~~V~~vafSp-g-~~la~~s~~s~D~tIkLWdi~tG~-----~L 263 (474)
.|-+|||||-|.+++||.++++.+. .+.|.+.|-+|+++- + ..+++. |.|.|||+|++..-+ ..
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv---S~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV---SQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe---cCCceEEEecCCCcccccccce
Confidence 6889999999999999999655532 234567899999994 3 344443 679999999986511 11
Q ss_pred E----EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 264 K----VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 264 ~----tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
. +-..|...|++|+.+| .+..++++|.|+|.|||++.+++++.+|.||...||+|.|+|..|++||+| |.||||
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred ehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 1 2235778899999874 444555578999999999999999999999999999999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
|.++ ..|++||+||... |.-+.|-.+|+.|+|++. ||-|||||+.|++|+.+|.+|++
T Consensus 532 W~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a-----------dGliKlWnikt~eC~~tlD~H~D----- 590 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA-----------DGLIKLWNIKTNECEMTLDAHND----- 590 (775)
T ss_pred EEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-----------CCcEEEEeccchhhhhhhhhccc-----
Confidence 9995 9999999999976 788999999999999876 99999999999999999999997
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||+++-+|++.+++||+.||.|-+|.
T Consensus 591 -----------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 591 -----------------------------RVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -----------------------------eeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.14 Aligned_cols=322 Identities=11% Similarity=0.153 Sum_probs=257.0
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..||.-.+|. +-++|+|+-||.+++||+..+.|+..|.| |.++|.++.|+|+-.+..-+| |..| .++
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~s--g~~D------~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLAS--GATD------GTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheee--cCCC------ceE
Confidence 367788888887 99999999999999999999999999998 779999999999866533322 5677 899
Q ss_pred EEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCC----
Q 011970 164 KIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG---- 237 (474)
Q Consensus 164 ~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSpg---- 237 (474)
++|++.++.. .. ++. .|...+.+++|+ +|+..+.|++.|+++-|||+.+++++.+++- ..+.++.+-+.
T Consensus 174 ~vwnl~~~~tcl~---~~~-~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 174 RVWNLNDKRTCLH---TMI-LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG 248 (775)
T ss_pred EEEEcccCchHHH---HHH-hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence 9999986664 22 222 356678899998 7999999999999999999999999988873 45666666642
Q ss_pred --ceEEEEecCCCCccEEEEecCCCeEEEE--------------------------------------------------
Q 011970 238 --IMLLIFNRSSSHVPLKILSIEDGTVLKV-------------------------------------------------- 265 (474)
Q Consensus 238 --~~la~~s~~s~D~tIkLWdi~tG~~L~t-------------------------------------------------- 265 (474)
..+.+. ++++.+++||.++|+|+..
T Consensus 249 ~~~~~~Ta---G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 249 KGEYIITA---GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred cceEEEEe---cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 344443 4467777777777766532
Q ss_pred -----------------------------------EeecCcceeEEE---------------------------------
Q 011970 266 -----------------------------------FYHLLHRNKKVD--------------------------------- 277 (474)
Q Consensus 266 -----------------------------------l~~h~~~v~~V~--------------------------------- 277 (474)
+.||...|.+++
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 223333334443
Q ss_pred -------------EEecCCCeEEEEeCCCcEEEEECCCCc---------eEEeccccCCceEEEEEcCCCcEEEEEc-CC
Q 011970 278 -------------FIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 278 -------------F~~~~~~~ll~~~~D~tIkIWDv~tg~---------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~ 334 (474)
++--....++++|.|+|||+|++...+ |..+-..|...|.+|+.+|+.+++||+| |+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 211111245556777888888776522 1123467999999999999999999999 99
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
|.|||+++ ++++.+|.||.-. ||+|.|+|..|++|++|. |+|||||.|.+..|++||.||++
T Consensus 486 taKiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~- 548 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS- 548 (775)
T ss_pred ceeeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc-
Confidence 99999995 9999999999976 799999999999999876 99999999999999999999997
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.-+.|=.+|+.|+|++.||.||||++
T Consensus 549 ---------------------------------aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 549 ---------------------------------AVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ---------------------------------eeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 8999999999999999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.14 Aligned_cols=280 Identities=13% Similarity=0.201 Sum_probs=236.6
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
-+||++++|.|||+|...||.|.+|++ +++..|+.+...||+..||.|. . ..|||+|+.++++.. ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~-----~------qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAG-----N------QHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhcc-----C------CeeEEEEccCCCCCc-ee
Confidence 579999999999999999999999999 6889999999999999999854 2 689999999998742 22
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 179 lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
-|+. +.+-|.+|.|- -||+.+.+||.|||+||||+..-.|.+.+. ...|.+|.++|.+.=++++ ..++.|++||+
T Consensus 78 t~e~-h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~--dqsg~irvWDl 153 (311)
T KOG0315|consen 78 TFEG-HTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG--DQSGNIRVWDL 153 (311)
T ss_pred EEec-cCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee--cCCCcEEEEEc
Confidence 3442 56778899997 799999999999999999999988877775 4689999999965555543 34578999999
Q ss_pred CCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc------eEEeccccCCceEEEEEcCCCcEEEE
Q 011970 258 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 258 ~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~------~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
.+-.|-..+- .-.-.+.++... |+|.++++.-.-|+..+|++-++. .+..++.|...+..+.||||+++||+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 8876766554 223456777754 778888888899999999998754 34557889999999999999999999
Q ss_pred Ec-CCcEEEEeCCC--cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 331 FR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 331 ~s-D~tIklWd~~G--~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
+| |.|+|||+.++ ++-..+++|+.| ||..+||.||+||++|+. |+++||||+..|+.++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeec
Confidence 99 99999999975 455689999999 799999999999999875 999999999999999999
Q ss_pred cCCCC
Q 011970 408 NATNC 412 (474)
Q Consensus 408 ~gH~~ 412 (474)
.||-.
T Consensus 297 ~gh~K 301 (311)
T KOG0315|consen 297 QGHHK 301 (311)
T ss_pred CCccc
Confidence 99973
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=333.39 Aligned_cols=276 Identities=13% Similarity=0.173 Sum_probs=233.6
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
-|+.|+.. ....+.+..||+|+.+||. |-.| -.|++|.+..-++- +|-... +.
T Consensus 369 ic~YT~~n-t~~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl~---~lk~~~-------------~l 421 (707)
T KOG0263|consen 369 ICMYTFHN-TYQGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKLK---KLKDAS-------------DL 421 (707)
T ss_pred EEEEEEEE-cCCcceeEeecCCcchhhc----cccc------cEEEEEecchhhhc---cccchh-------------hh
Confidence 35556654 4467999999999998876 3344 57888887654531 111111 11
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
..+-..+.|-.+..-|...+...+++ |.+.|.++.|+|+..++.+ +|+|.+||||++.|-.|+-.++||..+||.|
T Consensus 422 ~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS--cSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS--CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred ccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee--ccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 12333455555667776665555555 4678999999997777776 4789999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCC
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 354 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~ 354 (474)
+|+ |.|-++|++|.|+|.+||...+-..++++.||...|..+.|.|+..++|||| |+|||+||+ +|..++.|.||..
T Consensus 500 ~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 500 QFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred Eec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 998 7789999999999999999999999999999999999999999999999999 999999999 5999999999999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
. |.+++|||+|++||||+. ||.|+|||+.+|+.+.++.+|++
T Consensus 579 ~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht~---------------------- 620 (707)
T KOG0263|consen 579 P-----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHTG---------------------- 620 (707)
T ss_pred c-----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhcccC----------------------
Confidence 7 789999999999999876 99999999999999999999986
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|.||.||..||+|+.|.+|+|||.
T Consensus 621 ------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 621 ------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 8999999999999999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.86 Aligned_cols=351 Identities=13% Similarity=0.175 Sum_probs=290.2
Q ss_pred hcccccceeecccCCCCCcc-ccccccccc------ccEEEEEee--ccEEEEeeCCCeEEeeeccccce--eeEeecCC
Q 011970 60 FRNMHLVEEYDTHDPKGHCP-FVLPFLMKR------TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLNVSP 128 (474)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~------~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~--l~~l~g~~ 128 (474)
|=-+++.+-.+.|..|.... .|+||-.|| ..|.+|-++ ...|+++|.|-++|||.+...+. .+.|+| |
T Consensus 110 ~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~g-H 188 (893)
T KOG0291|consen 110 FFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNG-H 188 (893)
T ss_pred EEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccC-C
Confidence 33455566667777777666 667775554 569999999 88999999999999999887666 677887 8
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--cCCCCC--------------------ccc--------
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS--------------------GFA-------- 178 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G~~~~--------------------~~~-------- 178 (474)
.+.|-+-||..|...|.|+|.+| .+-+|... -++... .-+
T Consensus 189 kd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 189 KDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred CcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 89999999999999999998654 44455432 111110 001
Q ss_pred -eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEE
Q 011970 179 -LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 179 -lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkL 254 (474)
.|..+ ..-+.+.+|. +.-.+||.|=..|...|+.+..-++++.++ +..|..++|+ -|.+||.+++ .-+.+-+
T Consensus 259 ~~ln~~-~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~--klgQLlV 334 (893)
T KOG0291|consen 259 HYLNQN-SSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS--KLGQLLV 334 (893)
T ss_pred eeeccc-ccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC--ccceEEE
Confidence 11111 1335578997 677899999999999999999999999886 6799999999 5999998853 3567999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
|+.++-.-+....+|..++.+++++ |||+.+++|++|+.|||||.++|-|+.++..|+..|.++.|+..|+.++|+| |
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred EEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 9998876677777999999999998 7888888999999999999999999999999999999999999999999999 9
Q ss_pred CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 334 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 334 ~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
|||+.||+ ++.+-+||....... ...|+.-|.|.++..|+. .-=-|.+|+++|||.+-.|.||.+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Q----fscvavD~sGelV~AG~~----------d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQ----FSCVAVDPSGELVCAGAQ----------DSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred CeEEeeeecccceeeeecCCCcee----eeEEEEcCCCCEEEeecc----------ceEEEEEEEeecCeeeehhcCCCC
Confidence 99999999 599999998765432 467888899999998875 134699999999999999999997
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+|.+|+|+|+|+.|||||.|.|||+||+
T Consensus 480 ----------------------------------PVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 480 ----------------------------------PVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ----------------------------------cceeeEEccccCeEEeccccceEEEEEe
Confidence 8999999999999999999999999985
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=290.43 Aligned_cols=280 Identities=11% Similarity=0.136 Sum_probs=234.7
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeecc-----ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRE-----TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~-----tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|.+++.. -++|.++|.|.++-+|++. .|..++-|.| |+..|..++.+|||++-.|+|. |
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~sw----D---- 84 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASW----D---- 84 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccc----c----
Confidence 55567777766 7999999999999999864 5788999998 8889999999999999999774 4
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEE
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKI 234 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vaf 234 (474)
+++++||+..|+... .|. +|.+-+-+|+|+ +|...|+|||.|+||||||.. |.|.+++.. ++|..|.|
T Consensus 85 --~~lrlWDl~~g~~t~---~f~-GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 --GTLRLWDLATGESTR---RFV-GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred --ceEEEEEecCCcEEE---EEE-ecCCceEEEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEE
Confidence 699999999998633 455 366778899998 788899999999999999974 678888863 58999999
Q ss_pred cCC--c-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc
Q 011970 235 SPG--I-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 235 Spg--~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
||. . ++++ ++.|+|||+||+++-++.++|.+|++.+..|+|+ |||..+++|+.|+.+-|||++.+++++.+.
T Consensus 157 sP~~~~p~Ivs---~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~- 231 (315)
T KOG0279|consen 157 SPNESNPIIVS---ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE- 231 (315)
T ss_pred cCCCCCcEEEE---ccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc-
Confidence 995 3 4444 4779999999999999999999999999999998 788888889999999999999999998865
Q ss_pred cCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 312 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~----gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
|+..|.+++|+|+--.|+.+-+..|||||++ +.++.+|. |......+....+++||+||+.|.+|..
T Consensus 232 a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-------- 303 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-------- 303 (315)
T ss_pred CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec--------
Confidence 7789999999998877766668889999996 88877655 2211111223468999999999999876
Q ss_pred cCCCCeEEEEeCC
Q 011970 387 EGSAGSINVSSIL 399 (474)
Q Consensus 387 ~s~DgtIklWdi~ 399 (474)
|+.|++|.+.
T Consensus 304 ---d~~irv~qv~ 313 (315)
T KOG0279|consen 304 ---DNVIRVWQVA 313 (315)
T ss_pred ---CCcEEEEEee
Confidence 9999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=318.13 Aligned_cols=239 Identities=20% Similarity=0.310 Sum_probs=212.0
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEec-CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSI-ED 259 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi-~t 259 (474)
..+-.+.|+ +||+.|++++.|+++++|++.+++ +++++. ...|.+++|||++ .++++ +.|++|||||+ +.
T Consensus 160 ~sv~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~---s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG---SDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe---cCCceEEEeeccCC
Confidence 345568998 799999999999999999998888 777774 4679999999866 55544 66999999999 67
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
|.++++|++|...|.+++|++ .+..+++++.|++|||||+++++|++++.+|.+.|++++|++||++|++++ |++|+|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV 314 (456)
T ss_pred CeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence 799999999999999999995 457888889999999999999999999999999999999999999999999 999999
Q ss_pred EeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 339 WNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 339 Wd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
||+. |+ |+.++.++.... .++.+.|+|+|++|++++. |+++++||+..++|+.++.+|.+.
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~-- 378 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNL-- 378 (456)
T ss_pred EECCCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCc--
Confidence 9995 88 788999988752 2799999999999999886 999999999999999999999851
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
. ..+.+..++++|+.|+||+.|+.|++|+.
T Consensus 379 -~----------------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 -V----------------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred -c----------------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 0 14667788999999999999999999984
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=266.84 Aligned_cols=276 Identities=17% Similarity=0.247 Sum_probs=237.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|..+.++ +++|++++.||.+++|+..+++.+..+.+ |...+.++.|+|+++.|++++ .+ ..+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~----~~------~~i~ 76 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGS----SD------KTIR 76 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEc----CC------CeEE
Confidence 56677777777 79999999999999999999998888886 778899999999999999865 35 6899
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLI 242 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~ 242 (474)
+|++..++.... +. .+...+..+.|+ +++++|++++.|+.+++||+.+++++..+.. ..|.+++|+|++.+++
T Consensus 77 i~~~~~~~~~~~---~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 77 LWDLETGECVRT---LT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEcCcccceEE---Ee-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 999988765332 22 123356689998 6889999999999999999999998888863 5699999999555554
Q ss_pred EecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs 322 (474)
++ +.|+.|++||+++++++..+..|...+..++|. +++..+++++.|+.|++||+++++.+..+..|...+.++.|+
T Consensus 152 ~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 152 SS--SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EE--cCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 42 347899999999999999999888889999997 556788888889999999999999999988899999999999
Q ss_pred CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 323 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++++++++ |++|++||+. ++++..+.+|... +.+++|+|++++|++++. |++|++||
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999996 9999999998875 789999999999999876 99999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=308.57 Aligned_cols=335 Identities=13% Similarity=0.152 Sum_probs=273.4
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
++|.+..|- -.+||++-.+|...|+.+..=.+|+.|.- .+..|..++||.-|+.||.++. |+.++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~---------klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCS---------KLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCC---------ccceEEEE
Confidence 678888777 78899999999999999998889999987 4578999999999999998651 24688899
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEE
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIF 243 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~ 243 (474)
+.+.-... +-+.+|...+.++++| |||+++|+|+.|+.|||||...|-|+.|+.. ..|..|.|+. |..++++
T Consensus 336 eWqsEsYV----lKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 336 EWQSESYV----LKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred Eeecccee----eeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 98776652 2333466677799998 8999999999999999999999999999974 5799999994 7777766
Q ss_pred ecCCCCccEEEEecCCCeEEEEEeecCcce-eEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v-~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
+-|+||+.||+..+.+.+||......- .+|+ ..|.|+.+.+|+ +.-.|.+|+++||+++.+|.||.++|..++|
T Consensus 411 ---SLDGtVRAwDlkRYrNfRTft~P~p~Qfscva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred ---ecCCeEEeeeecccceeeeecCCCceeeeEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 568999999999999999998653333 2333 236688888875 5678999999999999999999999999999
Q ss_pred cCCCcEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 322 LYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+|+|++|+|+| |+|||+||+ . ...+.+++--.. |.+++|+|||+-||.+.- ||.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTl-----------dgqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATL-----------DGQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEe-----------cceEEEEEh
Confidence 99999999999 999999998 3 446777774443 689999999999999876 999999999
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc-cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI-RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+..+.+|.|-.+...+. ...+. .+.-+..-+..+++.||+||+.|.+|+..+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~~~gR---------------~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGGR---------------KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhccccc---------------cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 9999999998865411110 01111 1111122348999999999999999999999999873
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=282.79 Aligned_cols=289 Identities=11% Similarity=0.149 Sum_probs=239.3
Q ss_pred cccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC
Q 011970 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (474)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~ 142 (474)
|+....++.|..|+.++...++ ...|+|+|+||.+-+||.-|....+.+.- +..+|...||+|.|+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~D-------------sr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTD-------------SRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGN 110 (343)
T ss_pred eeeEEEecccccceeeeEecCC-------------cCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCC
Confidence 3344566666666666666555 89999999999999999999998888886 789999999999999
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 220 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~ 220 (474)
.+|.++ -| ..-.|+++...+-....+.-.. +|.+++-...|- +|++ |.++|.|.|.-+||+++|+.
T Consensus 111 ~VAcGG----Ld------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~-ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 111 FVACGG----LD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNH-ILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred eEEecC----cC------ceeEEEecccccccccceeeeeecCccceeEEEEEc-CCCc-eEecCCCceEEEEEcccceE
Confidence 999853 45 3555666653322111111111 356677778996 5775 55678899999999999999
Q ss_pred EEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 221 LYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 221 l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
+..+++ ..|.+++++| +.+++++ +-|++.||||++.|.|.++|.+|..-|.+|.|. |+|.-+++|++|+|.|
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg---~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSG---GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCR 254 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEec---ccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeE
Confidence 999876 4799999998 4555544 569999999999999999999999999999998 6799999999999999
Q ss_pred EEECCCCceEEecccc--CCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 297 ILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 297 IWDv~tg~~~~~l~~h--~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
++|++..+.+.++.+. ...|.+++||--|+||..+. |.++.+||. .|+.+..|.||.+. |..+..||||--
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~a 329 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMA 329 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcE
Confidence 9999999888876643 35899999999999999998 999999998 69999999999997 789999999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEe
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+++||. |.++|||.
T Consensus 330 v~TgSW-----------Ds~lriW~ 343 (343)
T KOG0286|consen 330 VATGSW-----------DSTLRIWA 343 (343)
T ss_pred EEecch-----------hHheeecC
Confidence 999987 99999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=293.10 Aligned_cols=318 Identities=13% Similarity=0.141 Sum_probs=263.2
Q ss_pred ccccccEEEEEee--cc-EEEEeeCCCeEEeeeccc--cceee-------E----eecCCCceEEEEEEeeCCCEEEEEE
Q 011970 85 LMKRTKVIEIVAA--RD-IVFALAHSGVCAAFSRET--NRRIC-------F----LNVSPDEVIRSLFYNKNNDSLITVS 148 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~-~las~s~dgtiklW~~~t--g~~l~-------~----l~g~~~~~i~sv~fspdg~~Lis~S 148 (474)
|+|.++|..-... .+ ++|+++.|-+.|+|++.. +.+.. + =.+..+.-|.+|+||-+|..||+++
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 4467777666666 45 999999999999999874 22211 1 0111234699999999999999966
Q ss_pred eecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C
Q 011970 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 226 (474)
Q Consensus 149 ~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~ 226 (474)
.| ..++||+ ..|.+..+ +. .|-+.|.++.+. -.|.+|+|++-|+|+-|||..+|+....+. .
T Consensus 255 ----~~------G~~riw~-~~G~l~~t---l~-~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 255 ----ED------GEARIWN-KDGNLIST---LG-QHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred ----cC------cEEEEEe-cCchhhhh---hh-ccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeecc
Confidence 56 7999999 56665432 22 256778899997 799999999999999999999999766554 3
Q ss_pred CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 227 ~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..-.+|.+-.+..++++ +.|+.|++.-+..-.+.+||.||.+.|..+.|. |.+..|+++|.|+|+|||++..+.+.
T Consensus 319 ~~~lDVdW~~~~~F~ts---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATS---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred CCccceEEecCceEeec---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcch
Confidence 33355666666777776 457889999998778999999999999999997 55677777899999999999999999
Q ss_pred EeccccCCceEEEEEcCCC---------cEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 307 EVSRTEFMTPSAFIFLYEN---------QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 307 ~~l~~h~~~v~sv~Fspdg---------~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
+-|.+|...++.+.+||+| -.+|+++ |.||++||+ +|.|+.+|.+|+.. |.+|+|||||+||||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAs 469 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLAS 469 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEe
Confidence 9999999999999999864 5678887 999999999 59999999999987 789999999999999
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 455 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp 455 (474)
|+. ||.|.||++++|+.++.+.+.. .|..|.|+.
T Consensus 470 Gs~-----------dg~V~iws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~ 503 (524)
T KOG0273|consen 470 GSL-----------DGCVHIWSTKTGKLVKSYQGTG-----------------------------------GIFELCWNA 503 (524)
T ss_pred cCC-----------CCeeEeccccchheeEeecCCC-----------------------------------eEEEEEEcC
Confidence 987 9999999999999999998765 799999999
Q ss_pred CCCEEEEEcCCCcEEEcc
Q 011970 456 ERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 456 Dg~~LaSgs~DgtVklWd 473 (474)
+|..|.-.-.||.|.+=|
T Consensus 504 ~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCEEEEEecCCCceEEE
Confidence 999999888999988754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=285.73 Aligned_cols=297 Identities=15% Similarity=0.189 Sum_probs=250.4
Q ss_pred eeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEE
Q 011970 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (474)
Q Consensus 113 W~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~ 192 (474)
|... -++.+.++| |.++|+||++-|-++.++|+| .| ++++|||+.+|++..+. .+|..-+..|+
T Consensus 137 WHap-wKl~rVi~g-HlgWVr~vavdP~n~wf~tgs----~D------rtikIwDlatg~Lkltl----tGhi~~vr~va 200 (460)
T KOG0285|consen 137 WHAP-WKLYRVISG-HLGWVRSVAVDPGNEWFATGS----AD------RTIKIWDLATGQLKLTL----TGHIETVRGVA 200 (460)
T ss_pred ccCc-ceehhhhhh-ccceEEEEeeCCCceeEEecC----CC------ceeEEEEcccCeEEEee----cchhheeeeee
Confidence 5533 567778897 889999999999999999955 66 89999999999984321 23555667899
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
|| +--.+|-|++.|++||-|||+..+.++..++ ..|.+++..| ...|+++ +.|.++|+||++|...+.+|.||
T Consensus 201 vS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 201 VS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred ec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEecCC
Confidence 98 5778999999999999999998888877766 4799999999 5666665 66899999999999999999999
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTS 348 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~t 348 (474)
...|.+|.|. +.+.+++++|.|.||+|||++.|+.+.++.+|...|.+++..|.-.+|||++-..||-|++ +|+.++.
T Consensus 277 ~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 277 TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred CCcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 9999999997 5678999999999999999999999999999999999999999999999999557999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
|.+|..- +|+++...||-++ +|+. .|+|-.||..+|-+-+.++.--. |. .
T Consensus 356 lsgh~~i-----intl~~nsD~v~~-~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-pG-S----------- 405 (460)
T KOG0285|consen 356 LSGHNAI-----INTLSVNSDGVLV-SGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-PG-S----------- 405 (460)
T ss_pred cccccce-----eeeeeeccCceEE-EcCC-----------ceEEEEEecCcCccccccccccc-CC-c-----------
Confidence 9999875 7999999887655 4554 89999999999977665522110 00 0
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. +.-..|++..|+..|..|+||..|++||+|.
T Consensus 406 ------l-------~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 406 ------L-------ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ------c-------ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 0 0001799999999999999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=291.70 Aligned_cols=283 Identities=13% Similarity=0.192 Sum_probs=239.9
Q ss_pred EeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEecc--CCCCCccceeee---------ccccCceE
Q 011970 123 FLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES---------ESLKWPGF 190 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~--G~~~~~~~lf~~---------~~~~~~~~ 190 (474)
.+.+ |...|.+-+|||--+ .|++ |+.+ -+.++|++.. +.+.. +..|.+ ...+-+.+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~~~-q~~lrh~~~~~~~s~~~nkdVT~ 240 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIGST-QLVLRHCIREGGKSVPSNKDVTS 240 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhccccch-hhhhhhhhhhhcccCCccCCcce
Confidence 3444 777899999999988 6766 4466 6888898864 22210 111111 11245668
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
|+++ -+|..||+|+.||.+|+|+ ++|.++.+|.. ..|.+++++. |..|+++ +-|+|+-|||..+|++-+.|+
T Consensus 241 L~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 241 LDWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EEec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEec---cCCccEEEEeccCceEEEeee
Confidence 9998 6999999999999999999 58888888864 6899999995 7777765 558999999999999999999
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 345 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~l 345 (474)
.|...-..|+|. ++..+++++-|+.|+++-+....++.++.||.+.|.++-|.|.|.||+|+| |+|+|||+. ++.+
T Consensus 316 ~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 316 FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 887776788884 478899999999999999999999999999999999999999999999999 999999998 5999
Q ss_pred EEEeccCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpD---------g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
...|.+|..- +..+.+||+ |..||+++. |+||++||+..|+|+++|..|+.
T Consensus 394 ~~~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~~---- 453 (524)
T KOG0273|consen 394 VHDLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQE---- 453 (524)
T ss_pred hhhhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCCC----
Confidence 9999999975 578888886 467777766 99999999999999999999996
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|||||++||||+.||-|++|+.
T Consensus 454 ------------------------------pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 454 ------------------------------PVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ------------------------------ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999999999999999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=296.80 Aligned_cols=269 Identities=15% Similarity=0.281 Sum_probs=222.0
Q ss_pred cccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 88 ~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
...|+.+.+..+.++||+.|.||++||..+-+|++.|.| |.+.|-++-|-. ..|||+| -| -|+++||
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~--rviisGS----SD------sTvrvWD 263 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDE--RVIVSGS----SD------STVRVWD 263 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccc--eEEEecC----CC------ceEEEEe
Confidence 446899999989999999999999999999999999998 778888888843 5777754 44 5888888
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCC
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSS 247 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s 247 (474)
+.+|++.++ +|.+ ...+-.|.|+ || +++++|.|.+|.|||+.. | +
T Consensus 264 v~tge~l~t--lihH--ceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~s------------------p----------s 308 (499)
T KOG0281|consen 264 VNTGEPLNT--LIHH--CEAVLHLRFS--NG-YMVTCSKDRSIAVWDMAS------------------P----------T 308 (499)
T ss_pred ccCCchhhH--Hhhh--cceeEEEEEe--CC-EEEEecCCceeEEEeccC------------------c----------h
Confidence 888888663 5554 3344567886 66 778888888888888742 1 0
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
|. +|.+.|.||...|..|+|. +.++++++.|.|||+|++.|+++++++.||.-.+-. .-|.|++
T Consensus 309 -~i----------t~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rl 372 (499)
T KOG0281|consen 309 -DI----------TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRL 372 (499)
T ss_pred -HH----------HHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhccccccee--hhccCeE
Confidence 11 3456678999999999986 367778899999999999999999999999866533 3689999
Q ss_pred EEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---
Q 011970 328 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--- 402 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~--- 402 (474)
++||| |.||+|||++ |.|++.|+||..- |+.|-| |.+.|+||.. ||+||+||+.++.
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPR 434 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCc
Confidence 99999 9999999996 9999999999987 678888 8899999877 9999999998875
Q ss_pred ------EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 403 ------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 403 ------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+.++-.|++ .|..|.|+ --.|+|.+.|.||-+||.
T Consensus 435 a~~~~~Cl~~lv~hsg----------------------------------RVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSG----------------------------------RVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred ccccchHHHhhhhccc----------------------------------eeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 6677777765 89999995 467999999999999983
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=310.62 Aligned_cols=277 Identities=12% Similarity=0.118 Sum_probs=227.2
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccc----cc----eeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCC
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRET----NR----RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASD 153 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~t----g~----~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~ 153 (474)
+.|...|..|.|+ +++||+++.|++|+||+..+ +. .+..+.+ ...|.+++|+|. +..||+++ .
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~las~~----~ 553 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYIKSQVASSN----F 553 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCCCCEEEEEe----C
Confidence 3478889999999 99999999999999999753 22 2334443 367999999875 77888865 5
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEE
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEI 232 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~v 232 (474)
| .+++|||+.+++.... +. +|...+.+|+|+|++|.+|++|+.|++|+|||+.+++++.++.. ..|.++
T Consensus 554 D------g~v~lWd~~~~~~~~~---~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 554 E------GVVQVWDVARSQLVTE---MK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred C------CeEEEEECCCCeEEEE---ec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 5 6999999998886332 22 35566789999966899999999999999999999999988864 579999
Q ss_pred EEc-C-CceEEEEecCCCCccEEEEecCCCe-EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC------C
Q 011970 233 KIS-P-GIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------A 303 (474)
Q Consensus 233 afS-p-g~~la~~s~~s~D~tIkLWdi~tG~-~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t------g 303 (474)
+|+ + |..++++ +.|++|++||+++++ .+.++.+|...|..|.|. ++..+++++.|++|+|||+.. +
T Consensus 624 ~~~~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 624 QFPSESGRSLAFG---SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEeCCCCCEEEEE---eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 996 4 5666665 558999999998876 578889999999999996 478899999999999999985 3
Q ss_pred ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe-------------ccCCCCcCCCCeeEEEECC
Q 011970 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 304 ~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl-------------~gH~~~~~~~~v~svafSp 368 (474)
.++..+.+|...+..++|+|++++|++++ |++|+||+.. +..+.++ .+|.. .|++++|+|
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~V~~v~ws~ 773 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-----FISSVCWRG 773 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-----EEEEEEEcC
Confidence 67888999999999999999999999999 9999999984 5443322 22323 379999999
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+|++|++|+. ||+|+||++
T Consensus 774 ~~~~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANS-----------TGNIKILEM 792 (793)
T ss_pred CCCeEEEecC-----------CCcEEEEec
Confidence 9999999876 999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=306.93 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=223.5
Q ss_pred ccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 81 VLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 81 ~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
+-.+.+....|.+..|+ +-+||.|-.|-.|++|.+. .+.|+.|.+.. . +. ++ =+.| +|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~kl~~lk~~~-~-l~----~~-----d~~s----ad---- 430 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PKKLKKLKDAS-D-LS----NI-----DTES----AD---- 430 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecc-hhhhccccchh-h-hc----cc-----cccc----cc----
Confidence 34566677888899999 7799999999999999975 66777777522 1 11 11 1111 11
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP 236 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp 236 (474)
-...+.|-..+-.- ..|.+ |.+.|..+.|+ |+-++|.|||.|+++|||.+.+-+|+-..+ ...||.|.|+|
T Consensus 431 --~~~~~~D~~~~~~~--~~L~G--H~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 431 --VDVDMLDDDSSGTS--RTLYG--HSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred --hhhhhccccCCcee--EEeec--CCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 00111121111110 11343 45677789998 799999999999999999999998876555 46899999999
Q ss_pred -CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCc
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 315 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~ 315 (474)
|.++|++ |.|+|.+||+...-+.++.|.+|+.-|.+|+|.| ..-+++.||.|+|+|+||+.+|..++++.||..+
T Consensus 504 ~GyYFata---s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 504 RGYYFATA---SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred CceEEEec---CCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 7777775 7799999999999999999999999999999994 4567777899999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 316 PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|.+++|||+|++||||+ |+.|+|||+ .|+++.+|.+|.+- |.++.||.||..||||+. |++|
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------DnsV 643 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNSV 643 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCeE
Confidence 99999999999999999 999999999 49999999999775 799999999999999876 9999
Q ss_pred EEEeCCCCeEE
Q 011970 394 NVSSILTGKCL 404 (474)
Q Consensus 394 klWdi~tG~cl 404 (474)
++||+..-.+.
T Consensus 644 ~lWD~~~~~~~ 654 (707)
T KOG0263|consen 644 RLWDLTKVIEL 654 (707)
T ss_pred EEEEchhhccc
Confidence 99998654444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=274.18 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=244.3
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~ 200 (474)
+-.|.| |.+.|+.+.|+|+|..|||+ +.| +.|-||+ ..|.+.+.-.+- +|-+.|-.|.|. +||..
T Consensus 40 ~m~l~g-h~geI~~~~F~P~gs~~aSg----G~D------r~I~LWn-v~gdceN~~~lk--gHsgAVM~l~~~-~d~s~ 104 (338)
T KOG0265|consen 40 IMLLPG-HKGEIYTIKFHPDGSCFASG----GSD------RAIVLWN-VYGDCENFWVLK--GHSGAVMELHGM-RDGSH 104 (338)
T ss_pred hhhcCC-CcceEEEEEECCCCCeEeec----CCc------ceEEEEe-ccccccceeeec--cccceeEeeeec-cCCCE
Confidence 344665 88889999999999999994 477 8999999 556664432222 355677789998 79999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
|.|++.|++++.||+++|++.+.+.. .-|.++.-+. |..|+.+ ++.|+|+||||+++-+++++++. ...+.+|.
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S--gsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS--GSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe--cCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 99999999999999999999987764 5688888664 6666665 47799999999999999999963 25689999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC----Cc-EEEEecc
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GE-LVTSFED 351 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~----G~-ll~tl~g 351 (474)
|. +..++..+++-|+.||+||++.++++.++.||.++|..+..+|+|..++|-+ |.|+++||++ ++ ||..|+|
T Consensus 182 f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 97 6788999999999999999999999999999999999999999999999999 9999999973 44 6999999
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|..-.- -+...+++||++..+..||. |..+.+||..+-.++.+|.||..
T Consensus 261 ~~hnfe-knlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------- 309 (338)
T KOG0265|consen 261 HIHNFE-KNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------- 309 (338)
T ss_pred chhhhh-hhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce-------------------
Confidence 875321 12457899999999999876 99999999877799999999996
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 ---------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 ---------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ---------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=301.47 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=228.4
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~-l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
.+-.+.+++++.|+|+++|+..+|+.+.+ |.| |.+.||+++|..-+..|+++| .| +++++||..+|+|
T Consensus 215 q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS----~D------~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 215 QLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGS----TD------KTERVWDCSTGEC 283 (537)
T ss_pred eeecCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEe----cC------CcEEeEecCCCcE
Confidence 33468899999999999999999999999 998 889999999988788899966 66 7999999999999
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCcc
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVP 251 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~t 251 (474)
...+. + |..-+..+.. .+.++++||.|.||||||+.+|+++.++. ...|.+|.++ +.+++++ +.|++
T Consensus 284 ~~~l~--g--h~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsg---s~d~~ 352 (537)
T KOG0274|consen 284 THSLQ--G--HTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSG---SYDGT 352 (537)
T ss_pred EEEec--C--CCceEEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEE---ecCce
Confidence 55322 1 2222223433 46789999999999999999999999986 4689999999 6777766 45789
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCC-CeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~-~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
|++||+.+|+||++|.+|.++|.++.|. + ..+++|+.|++||+||+++. +|+.++.+|...|..+ ...+++|+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lv 427 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLV 427 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeE
Confidence 9999999999999999999999999864 4 78888999999999999999 9999999999888665 45678899
Q ss_pred EEc-CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|++ |++||+||.. |+|++++++ |... |..+++. ...+++++. |++++|||+.+|++.++
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhh
Confidence 999 9999999995 999999999 4443 5666665 355666554 99999999999999998
Q ss_pred ecCCC
Q 011970 407 INATN 411 (474)
Q Consensus 407 l~gH~ 411 (474)
+-.++
T Consensus 490 l~~~~ 494 (537)
T KOG0274|consen 490 LLSTD 494 (537)
T ss_pred hhhcc
Confidence 85555
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.46 Aligned_cols=283 Identities=15% Similarity=0.184 Sum_probs=222.0
Q ss_pred eeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.+.+++| |.+.||+++++|- |..|||+| .| +.+|||+...|.-..-.......|.+.|++|||+ |.|
T Consensus 6 ~~~~~~g-h~~r~W~~awhp~~g~ilAscg----~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSG-HKDRVWSVAWHPGKGVILASCG----TD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecC-CCCcEEEEEeccCCceEEEeec----CC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 4567887 6689999999998 88898865 67 8999999765443111112222467788899998 799
Q ss_pred eEEEEecCCCcEEEeecCCC--eEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC---eEEEEEeecC
Q 011970 199 KVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLL 270 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg--~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG---~~L~tl~~h~ 270 (474)
++||++|.|.|+-||.-..+ +|+.+|.+ +.|.+|+||+ |..||+. +.|+.|=||.+..+ +|+..|+.|+
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeecccc
Confidence 99999999999999986544 48888864 6899999996 7888876 55899999998644 6889999999
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 346 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll 346 (474)
+-|+-|.|. |.-+.|+++|.|.|||+|.-. .-+|.+++.+|..+|++++|.|.|+.|+|++ |+||+||-..
T Consensus 151 qDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---- 225 (312)
T KOG0645|consen 151 QDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---- 225 (312)
T ss_pred ccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----
Confidence 999999998 445677778999999999866 3469999999999999999999999999999 9999999953
Q ss_pred EEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC------eEEE-EecCCCCCCCCcc
Q 011970 347 TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG------KCLA-KINATNCSPKVDD 418 (474)
Q Consensus 347 ~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG------~cl~-tl~gH~~~~~~~~ 418 (474)
.++.+ |... +..|++- ...|||++. |+.|+|.....+ +.+. .-.+|.
T Consensus 226 ~~~~~~~sr~-----~Y~v~W~--~~~IaS~gg-----------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe------- 280 (312)
T KOG0645|consen 226 TDLSGMHSRA-----LYDVPWD--NGVIASGGG-----------DDAIRLFKESDSPDEPSWNLLAKKEGAHE------- 280 (312)
T ss_pred cCcchhcccc-----eEeeeec--ccceEeccC-----------CCEEEEEEecCCCCCchHHHHHhhhcccc-------
Confidence 22322 3333 5667776 568999876 999999975421 1111 112233
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCC-CCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD-g~~LaSgs~DgtVklWd~ 474 (474)
..|.+|.|+|. ++.|+||+.||+|++|.+
T Consensus 281 ---------------------------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 281 ---------------------------VDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ---------------------------cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 38999999995 789999999999999963
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=300.62 Aligned_cols=273 Identities=17% Similarity=0.250 Sum_probs=228.8
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
+.+.+...+.+..|. +| .+++ ++++ +++++|+..+|++... . +. +|.+-++.++|. .-+.+|.+
T Consensus 203 ~~~~~~~~~~~~q~~-~~-~~~~----~s~~------~tl~~~~~~~~~~i~~-~-l~-GH~g~V~~l~~~-~~~~~lvs 266 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH-DG-FFKS----GSDD------STLHLWDLNNGYLILT-R-LV-GHFGGVWGLAFP-SGGDKLVS 266 (537)
T ss_pred ecccCcchhhhheee-cC-eEEe----cCCC------ceeEEeecccceEEEe-e-cc-CCCCCceeEEEe-cCCCEEEE
Confidence 333466778888888 44 4666 4466 8889999999997442 1 11 356677799995 35779999
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
||.|.|+||||+.+|+|.+++.+ ..|..+.+-+. .++ + ++.|.+||+|++++|++|+++.+|...|.+|...
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~-s--gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLV-S--GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEe-e--ccCCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 99999999999999999999975 45777776643 223 2 4679999999999999999999999999999975
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C-cEEEEeccCCCCcCC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPD 358 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G-~ll~tl~gH~~~~~~ 358 (474)
+..+++++.|++|++||+.+++|+.++.||..+|.++.|.+. +.+.+|+ |++||+||++ + +|+.+|.+|...
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--- 415 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--- 415 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc---
Confidence 678888999999999999999999999999999999988777 8899999 9999999996 6 799999999986
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
|+.+ ...+++|+|++. |++||+||+.+|+|++++++ |..
T Consensus 416 --v~~l--~~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~~------------------------- 455 (537)
T KOG0274|consen 416 --VSSL--LLRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHVG------------------------- 455 (537)
T ss_pred --cccc--ccccceeEeccc-----------cccEEEeecccCceeeeeccCCcc-------------------------
Confidence 4444 347899999876 99999999999999999999 543
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|+++++. -..+++++.|+++++||.
T Consensus 456 ---------~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 456 ---------GVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ---------cEEEeecC--cceEEEEecCCeeEEEec
Confidence 78888887 578999999999999984
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=292.99 Aligned_cols=226 Identities=17% Similarity=0.293 Sum_probs=196.4
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+..+.+..|.++ |+ .++||..|.||||||.++..|+++|.+ +.|.++.|..- ++++ +|+|.||++||++||
T Consensus 195 e~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viis--GSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVS--GSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEe--cCCCceEEEEeccCC
Confidence 345667789996 45 689999999999999999999998875 57999988632 4444 367899999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---eEEeccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
++|+++-||...|.-+.|+ ++++++++.|.+|.+||+.+-. |.++|.||-..|..|.|+. ++++|+| |+||
T Consensus 268 e~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceE
Confidence 9999999999999999997 5899999999999999998754 5678999999999997764 5999999 9999
Q ss_pred EEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 337 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 337 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
|+|+.+ +++++++.||.-.+ .+.--.|++++|||. |.||||||+..|+||+.|+||..
T Consensus 343 kvW~~st~efvRtl~gHkRGI-------AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe--- 401 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGI-------ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE--- 401 (499)
T ss_pred EEEeccceeeehhhhcccccc-------eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH---
Confidence 999995 99999999998652 334558999999875 99999999999999999999995
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-|.++-|+ .+.|+||..||+||+||.
T Consensus 402 -------------------------------LvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 -------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred -------------------------------hhhheeec--CceeeeccccceEEEEec
Confidence 78889995 567999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=266.35 Aligned_cols=261 Identities=11% Similarity=0.128 Sum_probs=217.1
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--E
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M 220 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~ 220 (474)
+|+|+ +.| +|||+|...+|+|..+++ +. -..+..++.. ||++.||.++. .-||++|+.+++ +
T Consensus 12 iLvsA----~YD------hTIRfWqa~tG~C~rTiq---h~-dsqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 12 ILVSA----GYD------HTIRFWQALTGICSRTIQ---HP-DSQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNP 75 (311)
T ss_pred EEEec----cCc------ceeeeeehhcCeEEEEEe---cC-ccceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCc
Confidence 56664 478 999999999999976533 21 2345589998 79999998875 569999999877 4
Q ss_pred EEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 221 LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 221 l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+.++. .++|.+|.|. +|.++.++ |+|+++||||++.-.|.+.|++ ...|.+|...| ...-|+++-.++.|++
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhp-nQteLis~dqsg~irv 150 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHP-NQTELISGDQSGNIRV 150 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEec---CCCceEEEEeccCcccchhccC-CCCcceEEecC-CcceEEeecCCCcEEE
Confidence 66664 5799999999 67777765 7799999999999888888875 48899999774 4456777789999999
Q ss_pred EECCCCceEEecccc-CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc------EEEEeccCCCCcCCCCeeEEEECC
Q 011970 298 LDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------LVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 298 WDv~tg~~~~~l~~h-~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~------ll~tl~gH~~~~~~~~v~svafSp 368 (474)
||+.+..|.+.+..+ ...+.+++.-|||..++.+. -|+.-+|++- +. .+..|..|... +..+-+||
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSP 225 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSP 225 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECC
Confidence 999999988765543 35788999999999999998 8899999983 32 45678888876 57888999
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 447 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (474)
|+++||++|. |.|+|||++.+- +.-..|+||+. |
T Consensus 226 d~k~lat~ss-----------dktv~iwn~~~~~kle~~l~gh~r----------------------------------W 260 (311)
T KOG0315|consen 226 DVKYLATCSS-----------DKTVKIWNTDDFFKLELVLTGHQR----------------------------------W 260 (311)
T ss_pred CCcEEEeecC-----------CceEEEEecCCceeeEEEeecCCc----------------------------------e
Confidence 9999999875 999999998776 67788999996 9
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 448 ITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 448 V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
||..+||.||++|+|||.|+++|||+.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999999999999999999984
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=291.94 Aligned_cols=275 Identities=15% Similarity=0.133 Sum_probs=228.2
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
.-+|..|.|.|+|..|+++|..| ...||+. .. +..+.+. +|-..|..++++ +||..++||+.|
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG----------EFtLWNg---~~fnFEtilQ--aHDs~Vr~m~ws-~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG----------EFTLWNG---TSFNFETILQ--AHDSPVRTMKWS-HNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc----------cEEEecC---ceeeHHHHhh--hhcccceeEEEc-cCCCEEEEcCCC
Confidence 45799999999999999987543 5557773 21 1111122 233456689998 799999999999
Q ss_pred CcEEEeecCCCe--EEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYT--MLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~--~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|.||+|+.+-.. ..+.-+.+.|+++|||| |.+++++ |+|++|||||..-.+.-..|.||.--|++|++.| .-+
T Consensus 160 G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kg 235 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKG 235 (464)
T ss_pred ceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccc
Confidence 999999965322 22333357899999998 8888886 7799999999999998899999999999999985 466
Q ss_pred eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCee
Q 011970 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 362 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~ 362 (474)
.++++|.|.+||+||.++|+|+.++.+|...|.++.|+|++++|+|+| |.++|+.|++ =+.+.++.+|..- |+
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----he
Confidence 777789999999999999999999999999999999999999999999 9999999997 7788999999986 68
Q ss_pred EEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCcccccccccccccc
Q 011970 363 NIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 440 (474)
Q Consensus 363 svafSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (474)
+++++|= -.++.||+. ||.|..|.+...+.+..+ .+|..
T Consensus 311 ~~~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd~---------------------------- 351 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHDG---------------------------- 351 (464)
T ss_pred eeccccccccceeeccC-----------CCceEEEeccccccccCCCccccc----------------------------
Confidence 9999995 566677654 999999999755665555 34553
Q ss_pred ccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 441 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 441 ~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||+|+|+|=|++|+|||.|.++|.|.
T Consensus 352 ------~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 352 ------EIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ------ceeeeeccccceeEeecCCCcceeeec
Confidence 899999999999999999999999994
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=270.96 Aligned_cols=357 Identities=13% Similarity=0.162 Sum_probs=266.0
Q ss_pred cCcchhhhhhhcccccccCCccccc--------chhhhhhccccc------ceee-cccCCCCCcccccccccccccEEE
Q 011970 29 DGFVNSVKKLQRREICSKRDRAFSI--------SNAQERFRNMHL------VEEY-DTHDPKGHCPFVLPFLMKRTKVIE 93 (474)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l------~~~~-~~~~~~~~~~~~~~~~~~~~~V~~ 93 (474)
.+..+-|.||-+-|=+....+.|-. ..-.|-.+.-++ .-|| ..+.+|... ..+-|...|-+
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl----~~~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPL----QCFLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcc----ccccchhhhhh
Confidence 4456778888888877666665521 222222222222 2233 334444432 22348889999
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCccceeeeEEEEeEecc
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~---Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
|..+++.|+++++||++++|+.. |+++.++.| |.++|.++++---++. ++++| .| +++++|-+..
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas----~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSAS----MD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEec-CCcceeeeEEEecCCccceEEEec----CC------ceEEEEEecC
Confidence 99999999999999999999977 999999998 8899998888444444 77755 77 8999999988
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCc
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV 250 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~ 250 (474)
|..--....-..+|-..|.+|+-+ ++|..++|||.|.++|||+.++ ...-++..... +=....+. ++
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~---~rrk~~~~--------~~ 245 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN---RRRKKQKR--------EK 245 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccccch---hhhhhhhh--------hh
Confidence 875221111111455677789886 7999999999999999999432 22222221100 00000000 11
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEE
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
. ..+++.+-++.||...|.+|.|.+ .+.+.++++|+|||.||+.+|.++.++.+. ....++..+|..+|||+
T Consensus 246 ~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 246 E-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLAS 317 (423)
T ss_pred c-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeee
Confidence 1 136788999999999999999975 788889999999999999999998876654 47788999999999999
Q ss_pred Ec-CCcEEEEeCC---CcE-EEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCe-E
Q 011970 331 FR-NRTVAVWNFR---GEL-VTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGK-C 403 (474)
Q Consensus 331 ~s-D~tIklWd~~---G~l-l~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~-c 403 (474)
|+ |+.|+|||.+ |.. .++|.||.+| |.++.++|-. ..|+|+|. |+++||||+.+-+ .
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAP 381 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCc
Confidence 99 9999999984 555 5699999999 6899999955 66788876 9999999999988 8
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|.+|.+|.+ .|.++.++ +|..|+||+.|++|++..
T Consensus 382 lydI~~h~D----------------------------------Kvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 382 LYDIAGHND----------------------------------KVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceeeccCCc----------------------------------eEEEEecc-CCceEEeccCcceEEEec
Confidence 999999986 89999998 566899999999999853
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=275.52 Aligned_cols=235 Identities=16% Similarity=0.281 Sum_probs=214.0
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+|++||.+|+|+ |-.+.+++||.|+||||||+++|++..|+.+ ..|.+|+||+-.-.+-+ ++.|+.||-||++..
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs--~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFS--AGEDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEE--ecCCCeeEEEechhh
Confidence 579999999998 5678999999999999999999999999985 58999999974433333 477999999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
+.++.+-||++.|.+++.. |..+.|++++.|.++|+||+++...+.++.||...|.+|.|.|-.-.++|+| |.||+||
T Consensus 226 kvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 9999999999999999987 5578889999999999999999999999999999999999998777788999 9999999
Q ss_pred eCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 340 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 340 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|+. |+-..++..|.-. |++++..|.-..+||+|. ..||-|++..|+.++.|.+|+.
T Consensus 305 Dl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~------ 361 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA------ 361 (460)
T ss_pred eeccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc------
Confidence 995 9999999999876 799999999999999885 5699999999999999999996
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-|.+|+-+.|| .+++|++.|++..||
T Consensus 362 ----------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 ----------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ----------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78999999998 689999999999998
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=285.03 Aligned_cols=233 Identities=16% Similarity=0.224 Sum_probs=211.4
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
.|.+|.|. |....+..+=..|.|.|||.+|.+++++++ +..|++.+|-+ -++++++ ++|..|++++..|++..
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G---sDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG---SDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe---cCCceEEEEecccceee
Confidence 34589998 678888888899999999999999999997 56899999996 6777776 66899999999999999
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd 340 (474)
++|+.|.+-+++++..| ..-++|++|+|-+||+||.+.+ .|.+++.||...|..++|.| |...|||+| |+|||||.
T Consensus 91 ~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99999999999999884 4678999999999999998864 58899999999999999996 889999999 99999999
Q ss_pred C-CCcEEEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 341 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 341 ~-~G~ll~tl~gH~~~~~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+ +-.+..||+||..- ||.|.+-|-| -+|+||+. |.+|||||.+|.+|++||+||..
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----- 228 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----- 228 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----
Confidence 9 58899999999986 7889887755 59999987 99999999999999999999996
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|..+.|+|.=.+|+|||+|||||||.+
T Consensus 229 -----------------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 -----------------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -----------------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 8999999999999999999999999974
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=280.61 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=245.5
Q ss_pred cceeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDD 195 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~ 195 (474)
-+.++++.| |...|.++-|.| .+.+|.|++ -| ..++||++.. |+|..++.. |...|..+.|+
T Consensus 204 kk~~~~~~g-H~kgvsai~~fp~~~hLlLS~g----mD------~~vklW~vy~~~~~lrtf~g----H~k~Vrd~~~s- 267 (503)
T KOG0282|consen 204 KKLSHNLSG-HTKGVSAIQWFPKKGHLLLSGG----MD------GLVKLWNVYDDRRCLRTFKG----HRKPVRDASFN- 267 (503)
T ss_pred HhheeeccC-CccccchhhhccceeeEEEecC----CC------ceEEEEEEecCcceehhhhc----chhhhhhhhcc-
Confidence 466888997 778899999999 899998854 66 7999999965 888665432 44566789998
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
.+|..+.|+|.|+++|+||++||+|+..++ +..+..|+|.|+ .+++++ ..|+.|+.||+++|+++++...|++.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHHhhhhh
Confidence 799999999999999999999999999998 567889999983 466665 55899999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC----CcEE
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELV 346 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~----G~ll 346 (474)
+.++.|. ++|.+.+++++|++++||+.+.+-.++. ...+..+..++...|++..++.=+ |+.|-+..+. -...
T Consensus 345 i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 345 ILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 9999998 6789999999999999999999887754 333444556788899999999999 9999998863 3345
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
..|+||... ++. -.|.|||||.+|+||+. ||.+.+||..|-+.+.+|++|+.
T Consensus 424 K~feGh~va--Gys-~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~~-------------- 475 (503)
T KOG0282|consen 424 KRFEGHSVA--GYS-CQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHDQ-------------- 475 (503)
T ss_pred hhhcceecc--Cce-eeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCCc--------------
Confidence 689999754 444 46999999999999976 99999999999999999999974
Q ss_pred ccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEcc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd 473 (474)
.+..+.|+|-- ..+||++.||.||+|+
T Consensus 476 --------------------~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 --------------------PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------------ceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999976 4699999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-29 Score=241.12 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=208.2
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
++++++++.|+++++||..+|+++.++++ + ..+++++|+|||+.|+.++ ..+ ..+++|++.+|+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~-~~~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~~- 68 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-G-QRPRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIGT- 68 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-C-CCCCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEe-
Confidence 46788999999999999999999999986 4 3378999999999875432 244 5899999988886332
Q ss_pred ceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKI 254 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkL 254 (474)
+... ..+..++|+ |+|+.| ++++.|+++++||+.+++++..+. +..+.+++|+|++ ++++++ .....+.+
T Consensus 69 --~~~~--~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~--~~~~~~~~ 141 (300)
T TIGR03866 69 --LPSG--PDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS--ETTNMAHF 141 (300)
T ss_pred --ccCC--CCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe--cCCCeEEE
Confidence 2211 124478998 788866 455679999999999999888886 4567899999855 555442 22345788
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEecccc-------CCceEEEEEcCCCc
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQ 326 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h-------~~~v~sv~Fspdg~ 326 (474)
||.++++++..+... .....++|+ ++++.+++++ .|++|++||+++++++..+..+ ...+..++|+|||+
T Consensus 142 ~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 142 IDTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EeCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 999999988766432 345678886 6677776654 6999999999999987654322 12345788999999
Q ss_pred EEEE-Ec-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 327 LFLT-FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 327 llaS-~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.++. .. +++|.+||.+ ++++..+..+ .. +..++|+|||++|++++. .+++|++||+.++++
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcE
Confidence 8544 34 7789999995 8887765422 22 578999999999998642 389999999999999
Q ss_pred EEEecCCC
Q 011970 404 LAKINATN 411 (474)
Q Consensus 404 l~tl~gH~ 411 (474)
+++++...
T Consensus 284 ~~~~~~~~ 291 (300)
T TIGR03866 284 IKSIKVGR 291 (300)
T ss_pred EEEEEccc
Confidence 99997654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=276.54 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=232.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+.+.|.||-|.|----++.+ - .+ .++.||+-.+....+. |+-. -..+++..|- +--+.++.||.|
T Consensus 12 rSdRVKsVd~HPtePw~la~-L---yn------G~V~IWnyetqtmVks---feV~-~~PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAA-L---YN------GDVQIWNYETQTMVKS---FEVS-EVPVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEEe-e---ec------CeeEEEecccceeeee---eeec-ccchhhheee-eccceEEEecCC
Confidence 66889999999988866653 3 33 7889999877766543 3321 1234566775 456689999999
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCC
Q 011970 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
..|||++.+|++.+++++ .+.|++|+.+| .-.++++ |+|.+||+||-+.+ .|.++|+||.|-|..|+|.|-|+
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 999999999999999987 46899999999 4455544 66999999999865 68899999999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc--CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCC
Q 011970 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs--pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~ 359 (474)
.++++++-|+|||+|.+.+..+.-+|.||...|..|.|- +|..+|+||+ |.||||||.+ -.|++||+||..-
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N---- 229 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN---- 229 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc----
Confidence 999999999999999999999999999999999999987 4668999999 9999999996 8899999999974
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
|+.++|+|.=-+|+|||. |||+|||+-.|=+...+|+
T Consensus 230 -vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn------------------------------- 266 (794)
T KOG0276|consen 230 -VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN------------------------------- 266 (794)
T ss_pred -ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh-------------------------------
Confidence 899999999999999876 9999999987766555542
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
..++.||+++-.+.+..++.|...|.|-+
T Consensus 267 ---~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 ---YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 33458999999999999999998887643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=284.16 Aligned_cols=273 Identities=16% Similarity=0.186 Sum_probs=233.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
....|.+|+|.|.---|+++ |.-..|.+||-+-|.++.. |. +|-+.|..|.|. |.+.+.+||+.|
T Consensus 8 kSsRvKglsFHP~rPwILts----------lHsG~IQlWDYRM~tli~r---Fd-eHdGpVRgv~FH-~~qplFVSGGDD 72 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS----------LHSGVIQLWDYRMGTLIDR---FD-EHDGPVRGVDFH-PTQPLFVSGGDD 72 (1202)
T ss_pred ccccccceecCCCCCEEEEe----------ecCceeeeehhhhhhHHhh---hh-ccCCccceeeec-CCCCeEEecCCc
Confidence 34678999999998877763 3337999999999998653 43 366778899998 799999999999
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
.+||||+.++-+|++||.+ +.|+.+.|++ =-+++++ |+|+||+|||.++++|+.++.||.|.|.+.+|. |..+
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptED 148 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTED 148 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccc
Confidence 9999999999999999975 5899999997 4577664 779999999999999999999999999999998 4567
Q ss_pred eEEEEeCCCcEEEEECCC--------C-------------------ce--EEeccccCCceEEEEEcCCCcEEEEEc-CC
Q 011970 285 KLLVKQENENLQILDVRN--------A-------------------EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~t--------g-------------------~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~ 334 (474)
.++++|-|.|||+||+.. | .+ ..++.||.-.|.-++|.|--.+++||+ |+
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 888899999999999863 2 11 246899999999999999999999999 99
Q ss_pred cEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 335 TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 335 tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.||+|..+ -+ .+-|..||.+- |.++-|.|.+++|+|.|. |++||+||+...+++++++--+
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren 292 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN 292 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC
Confidence 99999995 33 57799999985 789999999999999765 9999999999999999997554
Q ss_pred CCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 412 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
+ .-|-|+-+|..+.+|.|=..|.+
T Consensus 293 d----------------------------------RFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 D----------------------------------RFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred C----------------------------------eEEEEEecCCcceeeeecCCceE
Confidence 3 78889999999988777655543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=262.68 Aligned_cols=303 Identities=11% Similarity=0.079 Sum_probs=241.4
Q ss_pred cEEEEeeCCCeEEeeeccccceee---EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 99 DIVFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~---~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
-.++++++|+++.+|+ |-+.+ ++. .|...|++|.|||||...||++.| +++-|+|=.+|+...
T Consensus 161 fRi~T~sdDn~v~ffe---GPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsD----------gki~iyDGktge~vg 226 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFE---GPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSD----------GKIYIYDGKTGEKVG 226 (603)
T ss_pred eEEEeccCCCeEEEee---CCCeeeeeccc-ccccceeeEEECCCCCeEEEecCC----------ccEEEEcCCCccEEE
Confidence 5799999999999997 55444 455 477899999999999999998743 488888888888633
Q ss_pred ccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCc----EEEEEEcCCceEEEEecCCC
Q 011970 176 GFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKH----VQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 176 ~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~----V~~vafSpg~~la~~s~~s~ 248 (474)
. ++. .|.+.+.+|+++ ||++.++++|.|.|+||||+.+.++..++. +.. --.+.+- ...|++-+ -
T Consensus 227 ~---l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVS---l 298 (603)
T KOG0318|consen 227 E---LEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVS---L 298 (603)
T ss_pred E---ecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEE---c
Confidence 2 321 367778899998 899999999999999999999999999986 222 2233333 55555553 3
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--------------------
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------------------- 308 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-------------------- 308 (474)
+++|-+.+..++..++++.||...|.++..+ +++.+|++++.||.|-=||..+|.+-+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 5899999999999999999999999999976 6788999999999999999887642211
Q ss_pred -----------------------------------------------------ccccC--------CceEEEEEcCCCcE
Q 011970 309 -----------------------------------------------------SRTEF--------MTPSAFIFLYENQL 327 (474)
Q Consensus 309 -----------------------------------------------------l~~h~--------~~v~sv~Fspdg~l 327 (474)
|+.+. -.+.++|++||++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 00000 13457778999999
Q ss_pred EEEEc-CCcEEEEeCCC-cEE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 328 FLTFR-NRTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 328 laS~s-D~tIklWd~~G-~ll--~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
+|.|. |+.|.|+.+.| +++ ..++.|... +..|+|||||.+||++.. .+.|-+||+.+.+.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREV 521 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCce
Confidence 99999 99999999975 533 356788886 689999999999999865 78899999999887
Q ss_pred EEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 404 LAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 404 l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
...--+ |+. .|.+|+||||.+++||||-|-.|.+|++
T Consensus 522 ~~~~w~FHta----------------------------------kI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 522 KTNRWAFHTA----------------------------------KINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred ecceeeeeee----------------------------------eEEEEEeCCCceEEEeccccceEEEEEc
Confidence 333333 664 8999999999999999999999999974
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=265.77 Aligned_cols=290 Identities=17% Similarity=0.217 Sum_probs=240.0
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc-----eeeeccccCceEEEEeC
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-----LFESESLKWPGFVEFDD 195 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~-----lf~~~~~~~~~~V~Fs~ 195 (474)
-+++..+...-+.+..|||||++|+|+|+|| -+.+|+.-+||+.+..+ -|-. .-..+.++.||
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG----------FiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~FS- 272 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDG----------FIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISFS- 272 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccc----------eeeeehhccchhhhhhhhhhhcceee-cccceEEEeec-
Confidence 3444445555588999999999999977554 78899999999843222 2221 12346689998
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
.|...||+|++||.||||.+.||.|+..+. ...|.++.|| ++..++++ +.|.|+||--+..|+||+.|+||..
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCccc
Confidence 799999999999999999999999999885 4689999999 67777765 7799999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCCCcEEE
Q 011970 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVT 347 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~G~ll~ 347 (474)
-|..+.|. ++|..+++++.|+|||+|+..+++|+.+++ +..-.|.++...|- -..++... .+||-|-+++|+.++
T Consensus 350 yvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 350 YVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred cccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 99999997 789999999999999999999999999865 35568888886654 34555565 889999999999999
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
+|..-.-- ....-+.+.||-|.+|-+.+ +|+.+.-+++.+|++-++|.-|..
T Consensus 429 sfsSGkRE--gGdFi~~~lSpkGewiYcig-----------ED~vlYCF~~~sG~LE~tl~VhEk--------------- 480 (508)
T KOG0275|consen 429 SFSSGKRE--GGDFINAILSPKGEWIYCIG-----------EDGVLYCFSVLSGKLERTLPVHEK--------------- 480 (508)
T ss_pred eeccCCcc--CCceEEEEecCCCcEEEEEc-----------cCcEEEEEEeecCceeeeeecccc---------------
Confidence 99732211 01134677999999998764 499999999999999999999985
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|-.++-+|..+.|||=++||++|||.
T Consensus 481 -------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -------------------cccccccCcccchhhhhcccchhhhcC
Confidence 788899999999999999999999995
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=266.55 Aligned_cols=289 Identities=12% Similarity=0.183 Sum_probs=235.7
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccce-eee-ccccCceEEEEe
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFAL-FES-ESLKWPGFVEFD 194 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~l-f~~-~~~~~~~~V~Fs 194 (474)
-+..+.|+- |.+-||=+.||+||++|||+| .| .++-||.+ ..+++ .| ++. +|...|-++.||
T Consensus 214 ~qt~qil~~-htdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~----kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 214 SQTWQILQD-HTDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHF----KLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred chhhhhHhh-CCCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCcce----eeeeeeecccCceEEEEEC
Confidence 344456775 667799999999999999976 44 57788987 34442 22 222 355567789998
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec-C
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-L 270 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~ 270 (474)
||.++|++|+.|..+++||+.+|.+.+..+ +..+.++++.|++.-.+. ++.|++|-.||+ +|..+..-++- .
T Consensus 279 -PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~--Gs~dr~i~~wdl-Dgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 279 -PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT--GSPDRTIIMWDL-DGNILGNWEGVRD 354 (519)
T ss_pred -CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe--cCCCCcEEEecC-Ccchhhccccccc
Confidence 788999999999999999999999987775 357999999986554444 356899999997 78988887753 3
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
..|..++.. +||+++++...|..|+|++.++..++.....| ..+.++..|-||++++..= +++|.+||++ ..+++.
T Consensus 355 ~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 355 PKVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ceeEEEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 567888865 78999999999999999999998887654434 5799999999999999876 9999999995 889999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+.||...+. .+.++.=--|.++|||||. |+.|+||+-.+|+.+++|.||..
T Consensus 433 Y~Ghkq~~f--iIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~---------------- 483 (519)
T KOG0293|consen 433 YFGHKQGHF--IIRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK---------------- 483 (519)
T ss_pred hhcccccce--EEEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc----------------
Confidence 999998653 3555555557799999876 99999999999999999999995
Q ss_pred ccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|..|+++|.. .++||||.|||||+|.+
T Consensus 484 ------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 ------------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ------------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 89999999976 46999999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=255.50 Aligned_cols=322 Identities=10% Similarity=0.092 Sum_probs=258.3
Q ss_pred eeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
..|+.|..+.+++.+.|. ...+|+|+.|-...||++.+|..++.|.| |.+.|.++.||-||.+|||
T Consensus 58 ~tF~~H~~svFavsl~P~-------------~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPN-------------NNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred eehhhcCCceEEEEeCCC-------------CceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEe
Confidence 346666666666666665 78999999999999999999999999998 7788999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
+. -+ ..++||...+|..-. ++++. +.+. -+.+. |-+.+|+.|+.||.+-.|.+.++...+.++
T Consensus 124 Gd----ms------G~v~v~~~stg~~~~--~~~~e~~die---Wl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 124 GD----MS------GKVLVFKVSTGGEQW--KLDQEVEDIE---WLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred cC----CC------ccEEEEEcccCceEE--EeecccCceE---EEEec-ccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 54 44 688999999888522 34432 2344 48887 799999999999999999999866666665
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEeCCCcEEEEECC
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVR 301 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~ 301 (474)
...+..=.|.| |.++++. ..|++|++||..||+++.++.+.. .....+++. ..+..++.++.|+.+.+-+..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tg---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTG---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred CCCCCcccccccCCCceEEEE---ecCceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccc
Confidence 45788889997 5566655 448999999999999999887322 233556665 345666677899999999999
Q ss_pred CCceEEecc--------ccCC---ceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 302 NAELMEVSR--------TEFM---TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 302 tg~~~~~l~--------~h~~---~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
+|+-+..++ .|.. .|.++.||..=.|+|+|+ ||+|.|||+.-.-++..--|... |..+-|-+
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~- 337 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN- 337 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-
Confidence 998776655 3443 344555677888999999 99999999964444444446665 67899988
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEE
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 449 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 449 (474)
-.+|+++|. +|+||+||..||+|+.++.||+. .|.
T Consensus 338 t~~l~t~c~-----------~g~v~~wDaRtG~l~~~y~GH~~----------------------------------~Il 372 (399)
T KOG0296|consen 338 TDYLLTACA-----------NGKVRQWDARTGQLKFTYTGHQM----------------------------------GIL 372 (399)
T ss_pred cchheeecc-----------CceEEeeeccccceEEEEecCch----------------------------------hee
Confidence 688888886 99999999999999999999996 899
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 450 SLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 450 slafSpDg~~LaSgs~DgtVklWd 473 (474)
..+++||++.++|+|.|++.+|.+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEe
Confidence 999999999999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=286.39 Aligned_cols=240 Identities=15% Similarity=0.218 Sum_probs=210.2
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
|+.. ...+..++|. |.-..+.++=..|.|++||..-|+|+..+- ++.|+.|+|+|.+-|.++ +++|..||+|+.
T Consensus 5 fEsk-SsRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESK-SSRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKIKVWNY 80 (1202)
T ss_pred hhcc-cccccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe--cCCccEEEEEec
Confidence 5543 2335589998 788889999999999999999999998874 679999999996665555 477999999999
Q ss_pred CCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 258 ~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
.+.+||.||.||.+.|+.+.|.. .=--|+++|+|.||||||.++++|+.++.||...|.+..|.|--.+++|+| |+||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 99999999999999999999973 345789999999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCCC----------------------------cE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 337 AVWNFRG----------------------------EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 337 klWd~~G----------------------------~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
||||+.| .+ ...|+||.-- ||-++|.|.--+|+||+.
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-------- 226 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-------- 226 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC--------
Confidence 9999543 11 2478899865 799999999999999987
Q ss_pred cCCCCeEEEEeCCCCe--EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 387 EGSAGSINVSSILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~--cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
|..||||-...-+ .+-|.+||.+ .|++|.|+|.-..|.|.|
T Consensus 227 ---DRqVKlWrmnetKaWEvDtcrgH~n----------------------------------nVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 227 ---DRQVKLWRMNETKAWEVDTCRGHYN----------------------------------NVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred ---cceeeEEEeccccceeehhhhcccC----------------------------------CcceEEecCccceeEecC
Confidence 9999999986554 3678899997 899999999999999999
Q ss_pred CCCcEEEccC
Q 011970 465 RHGLVHVWSN 474 (474)
Q Consensus 465 ~DgtVklWd~ 474 (474)
+|++|||||+
T Consensus 270 EDksirVwDm 279 (1202)
T KOG0292|consen 270 EDKSIRVWDM 279 (1202)
T ss_pred CCccEEEEec
Confidence 9999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=251.80 Aligned_cols=292 Identities=15% Similarity=0.200 Sum_probs=230.1
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
|+| |+.++.-|-||.+|+.|.|++ .| .++.+|+-.+|+.+.+. . +|.+.|+++..+ -+.+.|++
T Consensus 6 l~G-HERplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGty---~-GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGTY---D-GHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEec----CC------CCceEEEecCCceeeee---c-CCCceEEEEEec-CCcceeee
Confidence 576 889999999999999999987 44 68889998899975431 1 467788899987 68899999
Q ss_pred ecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecC---CCCccEEEEecC-------CCeEEEEEeecCcc
Q 011970 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRS---SSHVPLKILSIE-------DGTVLKVFYHLLHR 272 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~---s~D~tIkLWdi~-------tG~~L~tl~~h~~~ 272 (474)
||.|.++||||+++|+++.++. ...|+.+.|++++.++.++.+ +....|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 568999999986666555433 223468999998 44556666655566
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
+.++-+. |-++.|+++.+|+.|.+||+++|+. ++.-+-|...|..+.||||..+|+|+| |.|-||||++ -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 6777776 6689999999999999999999865 455577999999999999999999999 9999999995 8999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-cccCCCC--eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~-~~~s~Dg--tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
.-- +.||+.+|+|-.+.++-|+.-+..|- .+..+.| --|.+++...+.+.-++||=+
T Consensus 229 ~te------~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-------------- 288 (327)
T KOG0643|consen 229 TTE------RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-------------- 288 (327)
T ss_pred eec------ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--------------
Confidence 743 34899999999998888754111111 1111111 133444444556666777765
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
+|.+|||+|||+-.+||++||.|||-
T Consensus 289 --------------------PINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 289 --------------------PINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred --------------------CcceeEECCCCcccccCCCCceEEEE
Confidence 89999999999999999999999983
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=269.67 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=191.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-------------E--cCCcEEEEEEcC-C-ceEEEEecCCCCccE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------------I--SDKHVQEIKISP-G-IMLLIFNRSSSHVPL 252 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-------------l--~~~~V~~vafSp-g-~~la~~s~~s~D~tI 252 (474)
...++ +||..+++++.+.....|+...|..+.. + |...|.+|+|+| + ..||++ +.|++|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg---S~DgtI 100 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA---SEDGTI 100 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE---eCCCEE
Confidence 34565 5777788888888888898766554321 2 345799999998 4 466665 568999
Q ss_pred EEEecCCC-------eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC
Q 011970 253 KILSIEDG-------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (474)
Q Consensus 253 kLWdi~tG-------~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg 325 (474)
+|||+.++ +++.+|.+|...|..|+|+|..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 99999876 36788999999999999985434678888999999999999999999999999999999999999
Q ss_pred cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-
Q 011970 326 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK- 402 (474)
Q Consensus 326 ~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~- 402 (474)
++|++++ |++|+|||++ |+++.++.+|.... +..+.|.|++.+|++++.+ .+.|++|+|||+.+.+
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCC
Confidence 9999999 9999999995 99999999998643 3567899999888876531 2458999999997654
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc-CCCcEEEccC
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 474 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~DgtVklWd~ 474 (474)
++.++..|.. ..+....|+||++.|++|+ .|++||+||.
T Consensus 250 p~~~~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 250 PYSTVDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ceeEeccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 5555544432 1566789999999999988 5999999984
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=266.24 Aligned_cols=334 Identities=14% Similarity=0.108 Sum_probs=245.2
Q ss_pred cCCCcCcchhhhhhhcccccccCCcccccchhhhhhcccccceeecccCCCCCccccccccccc-ccEE----EEEee--
Q 011970 25 RVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKR-TKVI----EIVAA-- 97 (474)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~V~----~i~~s-- 97 (474)
|...++..-.++-+|-|-....++|+...-+.. --+.|..-....+.|..+ +..+|.... .+|. .|...
T Consensus 32 Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~---~~~~~~pp~~~~~dp~~~-~~tKf~h~s~NKvkc~V~~v~WtPe 107 (464)
T KOG0284|consen 32 RRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSS---YIIDLVPPSLYLDDPSSA-FTTKFVHTSSNKVKCPVNVVRWTPE 107 (464)
T ss_pred hcccCCCcHHHHHHHHHhhcccccccccCCCch---hhhcccChhhccCCcccc-cccceEeccccccccceeeEEEcCC
Confidence 444566666667777666655555544221111 112222222222333333 335554433 3444 44444
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|..|++|+++|-..|||.. .=...++...|+..|+++.+|++|..+||++ .+ ..|++|+......
T Consensus 108 GRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD----~g------G~iKyWqpnmnnV---- 172 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGD----KG------GMIKYWQPNMNNV---- 172 (464)
T ss_pred CceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcC----CC------ceEEecccchhhh----
Confidence 8999999999999999942 2223345557999999999999999999954 44 6899998644433
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkL 254 (474)
+.+...+-..|..|+||| |....+++|.|++|||||...++.-..|. +-.|.+|+++| .+.+|++ |.|.+|||
T Consensus 173 k~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg---skDnlVKl 248 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG---SKDNLVKL 248 (464)
T ss_pred HHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc---cCCceeEe
Confidence 223222223566999995 66678899999999999998887655555 45799999999 4555554 55889999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR- 332 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s- 332 (474)
||.++|+||.++.+|.+.|..|.|. +.+..||++|.|.++|++|+++-+-+.++++|...|++++++|= -.+|.|++
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 9999999999999999999999998 55678888999999999999988888999999999999999984 45666677
Q ss_pred CCcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 333 NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 333 D~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|+.|..|.+. -+.+-.++ +|..- ||++++.|=|.+|++|+. |.++|.|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceeeecc
Confidence 9999999996 44444443 56654 799999999999999876 999999973
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=243.70 Aligned_cols=229 Identities=14% Similarity=0.206 Sum_probs=194.0
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC---CeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t---g~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
|...+++|+|+|.-|.+||||+.|++||+|++.. ..|...+. ...|++||+|| |..||++ |.|.|+-||.
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---SFD~t~~Iw~ 89 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---SFDATVVIWK 89 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe---eccceEEEee
Confidence 3456779999843388999999999999999884 55766664 46899999999 6666554 7799999998
Q ss_pred cCCC--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---ceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 257 IEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 257 i~tG--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg---~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
=++| +|+.+|+||...|++|+|+ .+|.+|++.+.|+.|=||.+..+ +|+.+|.+|++.|.-++|.|-..+|+|+
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 6655 7899999999999999998 57888888999999999998854 4888999999999999999999999999
Q ss_pred c-CCcEEEEeCC----CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 332 R-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 332 s-D~tIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
| |+|||+|... -+|+++|.+|... |++++|.|+|+.|+|++. |+||+||-.. ..
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~-----~~ 227 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLY-----TD 227 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeec-----cC
Confidence 9 9999999974 3599999999875 899999999999999876 9999999754 22
Q ss_pred ecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 407 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.+ |+. .++.|++. +| .||||+.|+.|+|..
T Consensus 228 ~~~~~sr----------------------------------~~Y~v~W~-~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 228 LSGMHSR----------------------------------ALYDVPWD-NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred cchhccc----------------------------------ceEeeeec-cc-ceEeccCCCEEEEEE
Confidence 322 332 78999998 44 799999999999863
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=246.37 Aligned_cols=273 Identities=9% Similarity=0.129 Sum_probs=224.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|...|..+.|. |..+|+++.|+.|-||+.. |. ..-.++| |.+.|..|-|++||..|.|+| .| ++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~g----tD------k~ 113 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKG-HSGAVMELHGMRDGSHILSCG----TD------KT 113 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEecc-ccccceeeecc-ccceeEeeeeccCCCEEEEec----CC------ce
Confidence 44445555554 9999999999999999955 44 4556786 889999999999999999976 55 79
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIML 240 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~l 240 (474)
++.||+++|++...++. |..-+.++.=+..+-+++.|++.|+|+||||+.+-.+++++.. ..+.+|.|.+ +...
T Consensus 114 v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEEEecccceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 99999999998653332 3333334433334557889999999999999998888888874 5799999995 4444
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC----CceEEeccccCC--
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN----AELMEVSRTEFM-- 314 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t----g~~~~~l~~h~~-- 314 (474)
.+ ++-|+.||+||+..+.++.+++||.+.|..+.-+ +.|..+++-+.|.++++||++- ..|+.++.+|..
T Consensus 190 ~s---ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 190 IS---GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ee---ccccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 43 3668899999999999999999999999999977 7799999999999999999984 457888888653
Q ss_pred --ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 315 --TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 315 --~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
..-.+++||+++.+..++ |+.+-+||.. -.++..|.||.+. |+.+.|+|...+|.|++. |
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~e~iils~~s-----------d 329 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPTEPIILSCSS-----------D 329 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCCCcEEEEecc-----------C
Confidence 234678999999999998 9999999997 5799999999997 799999999999999865 9
Q ss_pred CeEEE
Q 011970 391 GSINV 395 (474)
Q Consensus 391 gtIkl 395 (474)
++|-|
T Consensus 330 k~i~l 334 (338)
T KOG0265|consen 330 KTIYL 334 (338)
T ss_pred ceeEe
Confidence 99976
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=264.29 Aligned_cols=296 Identities=15% Similarity=0.148 Sum_probs=247.3
Q ss_pred eCCCeEEeeeccc-cce------e--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 105 AHSGVCAAFSRET-NRR------I--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 105 s~dgtiklW~~~t-g~~------l--~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
-.+.++..+.++. +.. + .++.| |.+-|+++.||.|+..|+|++ . ..++||+..+++|+.
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G-HR~dVRsl~vS~d~~~~~Sga----~-------~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG-HRSDVRSLCVSSDSILLASGA----G-------ESIKIWNRDTLKCIR 408 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc-chhheeEEEeecCceeeeecC----C-------CcEEEEEccCcceeE
Confidence 5567777877664 222 1 24555 778899999999998777743 3 489999999999965
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccE
Q 011970 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPL 252 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tI 252 (474)
+ ++. +++-...|- |.+++++.|...|.+.|+|+....++-++. ++.||+++.+|++ -++++ |.|+||
T Consensus 409 T---i~~---~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~---saDktV 478 (888)
T KOG0306|consen 409 T---ITC---GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG---SADKTV 478 (888)
T ss_pred E---ecc---ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe---cCCcEE
Confidence 3 333 366678897 799999999999999999999999887776 6789999999854 45554 569999
Q ss_pred EEEecCC-----CeEEEEEe-------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEE
Q 011970 253 KILSIED-----GTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 253 kLWdi~t-----G~~L~tl~-------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
|+||.+- |+.-+.|. .....+.+|.++ |++..|+++=-|.|++|+=+.+-+..-.|-||.-+|.++.
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 9998631 32222122 123567899988 5666666677999999999999999889999999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.|||+++++|+| |++||+|-++ |+|-++|-+|.+. |.+|.|-|+-.++.++++ |+.||=||-
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg 621 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDG 621 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeech
Confidence 999999999999 9999999998 9999999999987 799999999999999887 999999998
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..=+|+++|.||.. .||+++.+|+|.+++|+|.|.+||+|.
T Consensus 622 ~kFe~iq~L~~H~~----------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 622 EKFEEIQKLDGHHS----------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhhheeeccchh----------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 88899999999996 899999999999999999999999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=261.77 Aligned_cols=257 Identities=12% Similarity=0.170 Sum_probs=192.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCcccee----eeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLK----CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk----~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|+...+++|+..+++++ .+|--+. ....-++.-..|+.....+++. +|...|..|+|+|.|+++||+||.|
T Consensus 23 i~~~~~~~d~~~~~~~n----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 23 VTPSTALWDCSNTIACN----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cccccccCCCCCcEeEC----CceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 55666667766566543 3311100 0112233335566544334454 3567788999984389999999999
Q ss_pred CcEEEeecCCC-------eEEEEEc--CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 208 SIYKVFDLKNY-------TMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 208 ~tiKlWdl~tg-------~~l~tl~--~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
++|+|||+.++ +++.++. ...|..|+|+|. .+|+++ +.|++|+|||+++|+++.++.+|...+.++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999765 2455665 467999999983 467765 558999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCc-eEEEEEcCCCcEEEEE----c-CCcEEEEeCC--CcEEEE
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTF----R-NRTVAVWNFR--GELVTS 348 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~-v~sv~Fspdg~llaS~----s-D~tIklWd~~--G~ll~t 348 (474)
+|+ |++..|++++.|++|+|||+++++++..+.+|... +..+.|.|++.++++. + |++|+|||++ .+.+.+
T Consensus 175 a~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 998 57788888999999999999999999888888764 3467789887777764 3 7999999995 456666
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+..|... .+...+|+||+++|++++. .|++|++||+.+|+++..++...
T Consensus 254 ~~~d~~~----~~~~~~~d~d~~~L~lggk----------gDg~Iriwdl~~~~~~~~~~~~s 302 (493)
T PTZ00421 254 VDLDQSS----ALFIPFFDEDTNLLYIGSK----------GEGNIRCFELMNERLTFCSSYSS 302 (493)
T ss_pred eccCCCC----ceEEEEEcCCCCEEEEEEe----------CCCeEEEEEeeCCceEEEeeccC
Confidence 6544432 2567789999999998864 39999999999999888765543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=242.63 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=202.6
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.+..|.|. .||++..+++.|+|||||+...|.|++|.+ ++.|.+++.+ ++..+++ +++|+-+.+||++||+
T Consensus 17 qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s---~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 17 QGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS---CGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccccc---CCCCceEEEEEcccCe
Confidence 4567789997 899999999999999999999999998886 5789999999 5667665 4779999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
.++.|.+|...|..|.|++ +..-+++++.|.++|+||.++ -++++++..-.+.|.++... +..+++|| |||++.
T Consensus 93 v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999999999999999985 345666689999999999986 56899999888999998665 46788999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+|++ |++....-||. |+++.|||||+....+|- |++|||-|-.|||.|+..+||.+ .
T Consensus 170 ydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn--~-- 227 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKN--M-- 227 (307)
T ss_pred EEeecceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhccccc--c--
Confidence 9996 99887777774 799999999999998887 99999999999999999999996 1
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.=....|+.--..++|||+||.|.+||.
T Consensus 228 ----------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ----------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ----------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12234667777788999999999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=265.69 Aligned_cols=279 Identities=15% Similarity=0.193 Sum_probs=228.3
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceE-EEEeCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 197 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~~n 197 (474)
+.-|.|.| |+.-|+.|++.+.. .++++| .| +++++|.-+.++..... .|+ ++.+++.. ++|.+.+
T Consensus 5 ~ls~~l~g-H~~DVr~v~~~~~~-~i~s~s----Rd------~t~~vw~~~~~~~l~~~-~~~-~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEG-HKSDVRAVAVTDGV-CIISGS----RD------GTVKVWAKKGKQYLETH-AFE-GPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEecc-CccchheeEecCCe-EEeecC----CC------CceeeeeccCcccccce-ecc-cCcceeeccceecccc
Confidence 44578887 66678999988876 466644 66 78999995555553321 233 24555544 6775445
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeE
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~ 275 (474)
+-.|..|+.|.+|-+|.+.+..++++|.+ .+|-++.+-....++++ |=|.|+|+|-+ |+|..++.+|+..||+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSg---SWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISG---SWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEec---ccccceEEecc--hhhhcccCCcchheee
Confidence 55689999999999999999999999975 57988887766666665 44899999985 7999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW 355 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~ 355 (474)
|.+.+ . +++++||.|++||||. .+++++++.||++.|+.+++.|++.++.++.||.|++|+++|+++..+.||+..
T Consensus 146 v~~l~-e-~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 146 VASLP-E-NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNF 221 (745)
T ss_pred eeecC-C-CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceE
Confidence 99984 3 3899999999999997 489999999999999999999998766554599999999999999999999997
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
|.++.-.++++.|+|++. |+|+|||+. ++|++.|.=-+-
T Consensus 222 -----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPtt----------------------- 260 (745)
T KOG0301|consen 222 -----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPTT----------------------- 260 (745)
T ss_pred -----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCcc-----------------------
Confidence 688998889999999765 999999996 599999864332
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||++.+-++|. ||+|+.||.||||.
T Consensus 261 -----------siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 -----------SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred -----------ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 799999999997 78899999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-27 Score=246.12 Aligned_cols=322 Identities=14% Similarity=0.139 Sum_probs=251.0
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeec--CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV--SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g--~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|..=|.+|.|+ |..+|+.+-||++-+||=.||+.++.|.. .|.+.|++|+|+||++.++|+|+| .+
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----------kt 258 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----------KT 258 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----------ce
Confidence 55569999999 99999999999999999999999999972 388999999999999999999853 59
Q ss_pred EEEeEeccCCCCCccc------------eee---------------------------eccccCceEEEEeCCCCeEEEE
Q 011970 163 TKIEYIRRGKPDSGFA------------LFE---------------------------SESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~------------lf~---------------------------~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
+||||+.++++..+++ ||+ .+|.+.+.+++-+ |||++|-|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEe
Confidence 9999998887733322 222 1345666678887 79999999
Q ss_pred ecCCCcEEEeecCCCeEEE---EEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE---------------
Q 011970 204 SAQDSIYKVFDLKNYTMLY---SISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV--------------- 265 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~---tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t--------------- 265 (474)
||.||.|-=||..+|.+-. ..|.+.|..++-+..+-+.+. +-|.++|+-+++.+.+-+.
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~---g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI---GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE---ecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 9999999999998887532 335667888888863334443 4467787776643222111
Q ss_pred ----------------Eeec--------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEE
Q 011970 266 ----------------FYHL--------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAF 319 (474)
Q Consensus 266 ----------------l~~h--------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv 319 (474)
|+.+ .-....|+++ |++...++|++|+.|+|+-+..+++.+ .+..|...|+.+
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 1111 0122456655 677788889999999999999888654 467799999999
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
+||||+.+||++. .+.|-+||+. .+... .+.=|+.. |+.+++|||.+++|+||- |-+|-||
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-----I~~~aWsP~n~~vATGSl-----------Dt~Viiy 557 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-----INCVAWSPNNKLVATGSL-----------DTNVIIY 557 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-----EEEEEeCCCceEEEeccc-----------cceEEEE
Confidence 9999999999999 9999999995 66543 33348876 799999999999999987 9999999
Q ss_pred eCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 397 SILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 397 di~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
++.. .+.+....+|.. .|++|+|-- -.+|+|.+.|-.||+|+.
T Consensus 558 sv~kP~~~i~iknAH~~----------------------------------gVn~v~wld-e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLG----------------------------------GVNSVAWLD-ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EccChhhheEecccccc----------------------------------CceeEEEec-CceEEeccCcceeEEecc
Confidence 9964 455666667764 799999964 468999999999999974
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=244.73 Aligned_cols=277 Identities=13% Similarity=0.199 Sum_probs=234.5
Q ss_pred ccccEEEEEee-----ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 87 KRTKVIEIVAA-----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 87 ~~~~V~~i~~s-----~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|.-+|.++.|+ |-.|+|++.||.=-|-+-+||--|-|+.| |.+.||+..+++|.-.-||++ .| -
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaa----ad------f 81 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAA----AD------F 81 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhc----cc------c
Confidence 66778888888 89999999999999999999999999998 889999999999987667755 45 5
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLL 241 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la 241 (474)
+.+|||..+|..+. -|++.|+ +..|+|+ .|.++|.+|++++.+||+|++..+
T Consensus 82 takvw~a~tgdelh---sf~hkhi--vk~~af~-~ds~~lltgg~ekllrvfdln~p~---------------------- 133 (334)
T KOG0278|consen 82 TAKVWDAVTGDELH---SFEHKHI--VKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPK---------------------- 133 (334)
T ss_pred hhhhhhhhhhhhhh---hhhhhhe--eeeEEec-ccchhhhccchHHHhhhhhccCCC----------------------
Confidence 78899999998644 2555433 4589998 799999999999999999986311
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
...+.+.+|...|+.|-|. ..+..+|++.+|+||||||.++|..++.+.-. +.|.++-.
T Consensus 134 -------------------App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEv 192 (334)
T KOG0278|consen 134 -------------------APPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEV 192 (334)
T ss_pred -------------------CCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceee
Confidence 2234566777888888886 44678888899999999999999999887643 47889999
Q ss_pred cCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 322 LYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 322 spdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
++||+++..+.-++|+.||.. =+++++++-. |+|.+..++|+-.+++.|.. |..+.-+|..|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~P------~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~T 255 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP------CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNT 255 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccCc------cccccccccCCCceEEecCc-----------ceEEEEEeccC
Confidence 999999988778899999994 6677776532 67999999999999998754 99999999999
Q ss_pred CeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 401 GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 401 G~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+.+..+ +||-+ +|.+|.|||||...||||+|||||||..
T Consensus 256 geEi~~~nkgh~g----------------------------------pVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 256 GEEIGSYNKGHFG----------------------------------PVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceeeecccCCCC----------------------------------ceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999886 88875 8999999999999999999999999973
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=255.53 Aligned_cols=286 Identities=15% Similarity=0.222 Sum_probs=228.4
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.|. .|...+..|-|-++.++|+++ +.| +.|++|++.-+++..-..|-+ ..+.+..+.|+ ++++.+.
T Consensus 170 ~ld-~h~gev~~v~~l~~sdtlatg----g~D------r~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d-~~~~~~i 235 (459)
T KOG0288|consen 170 VLD-AHEGEVHDVEFLRNSDTLATG----GSD------RIIKLWNVLGEKSELISTLAG--SLGNITSIDFD-SDNKHVI 235 (459)
T ss_pred hhh-ccccccceeEEccCcchhhhc----chh------hhhhhhhcccchhhhhhhhhc--cCCCcceeeec-CCCceEE
Confidence 344 477889999999999999995 466 899999988777533223333 35667789998 6788888
Q ss_pred EecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
+++.|++.++|++.+++++.||.+ +.|.+++|.-+.--+++ ++.|.|||+||++.+.|.++.-- ...+..|...
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs--gs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~- 311 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS--GSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS- 311 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee--ccccchhhhhhhhhhheeccccc-cccccceEec-
Confidence 899999999999999999988864 68999999964442444 46799999999999999998752 2344555532
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+..++++-.|++||.||++++.+......|. .|.++..+++|.-++|++ |.++++-|++ -+..++|..-... ..
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~a 387 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CA 387 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-cc
Confidence 1233345589999999999999998877776 899999999999999999 9999999997 5556666532221 12
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
+..+.+.||||+.|+|.||. ||.|+||++.+|||...+..... +
T Consensus 388 sDwtrvvfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s-~------------------------ 431 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTS-N------------------------ 431 (459)
T ss_pred cccceeEECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCC-C------------------------
Confidence 23578999999999999876 99999999999999999987663 0
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|++++|+|-|..|++++.++.+.||.
T Consensus 432 -------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 -------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 0699999999999999999999999994
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=260.56 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=180.4
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCe--------EEEEEeecCc
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT--------VLKVFYHLLH 271 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~--------~L~tl~~h~~ 271 (474)
|+.++.|+||++....++.++.+ ..|.+|+|+| +.+||++ +.|++|+|||+.++. ++.++.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASg---S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASG---SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEE---eCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 67899999999877777777764 5799999998 4577765 568999999998752 4557889999
Q ss_pred ceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 272 RNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 272 ~v~~V~F~~~~~~~l-l~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
.|..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.+
T Consensus 127 ~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 127 KISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999998 456655 467899999999999999877665 557899999999999999998 9999999995 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
+.+|.+.+....++...|+||+++|+|++.+ ...+++|+|||+.+ ++++.++..+.. +
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~-~------------- 263 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA-S------------- 263 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC-c-------------
Confidence 9999875322223445678999999998751 11235899999984 788887755442 0
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+....++++|..+++|+.|++||+|+.
T Consensus 264 ------------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 264 ------------------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred ------------------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 04555566777999999999999999973
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=221.85 Aligned_cols=258 Identities=14% Similarity=0.158 Sum_probs=192.7
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG- 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg- 237 (474)
..+.+||+.+|++.. .+... ..+..++|+ |||+.| ++++.|++|++||+.+++.+.++. ...+..++|+|+
T Consensus 11 ~~v~~~d~~t~~~~~---~~~~~--~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTR---TFPVG--QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEE---EEECC--CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 689999998888644 23321 235579998 788866 677889999999999999888776 345778999985
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC-CcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D-~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..++++. +.|++|++||+++++++..+..+ .....++|+ |++..++++..+ ..+.+||..+++++.....+ ..+
T Consensus 85 ~~l~~~~--~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIAN--EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEc--CCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 4455542 45789999999999999888743 345778887 677788777765 46778899999887653322 356
Q ss_pred EEEEEcCCCcEEE-EEc-CCcEEEEeCC-CcEEEEeccCCCCc-CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 317 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLWH-PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 317 ~sv~Fspdg~lla-S~s-D~tIklWd~~-G~ll~tl~gH~~~~-~~~-~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
..++|+|||++|+ ++. |++|++||++ ++++.++..+.... +.+ ....++|+|||++++.+.. .++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PAN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCC
Confidence 7899999999874 555 9999999995 88888776432110 000 1236889999998665432 267
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc-CCCcEE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVH 470 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~DgtVk 470 (474)
+|.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+++|+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ-----------------------------------RVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC-----------------------------------CcceEEECCCCCEEEEEcCCCCeEE
Confidence 89999999999887764332 678999999999999875 699999
Q ss_pred EccC
Q 011970 471 VWSN 474 (474)
Q Consensus 471 lWd~ 474 (474)
+||.
T Consensus 275 v~d~ 278 (300)
T TIGR03866 275 VIDV 278 (300)
T ss_pred EEEC
Confidence 9984
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=230.07 Aligned_cols=283 Identities=12% Similarity=0.203 Sum_probs=230.9
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+++..|.. +.+.|+.+-||-||++-.+++ .| +++|||+..+|-++++..-.++| +..++-+ .|.
T Consensus 8 kr~~~l~~-~qgaV~avryN~dGnY~ltcG----sd------rtvrLWNp~rg~liktYsghG~E----VlD~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSILDC-AQGAVRAVRYNVDGNYCLTCG----SD------RTVRLWNPLRGALIKTYSGHGHE----VLDAALS-SDN 71 (307)
T ss_pred hhceeecc-cccceEEEEEccCCCEEEEcC----CC------ceEEeecccccceeeeecCCCce----eeecccc-ccc
Confidence 46777886 779999999999999988864 44 79999999999997654433333 3345555 345
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCC--eEEEEEeecCccee
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHLLHRNK 274 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~~h~~~v~ 274 (474)
..++||+.|+.|.+||++||+.+..+. ...|..|+|+....++.+ ++.|.+|++||-+.. +++++|......|.
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S--gsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS--GSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEe--ccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 579999999999999999999998885 468999999965444443 477999999998764 67888887778899
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
+|+.. +.-|++|+.|||+|.+|++-|++..-.-|| +|.++.||+||+..+.++ |.|++|-|-+ |+++++++||
T Consensus 150 Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 150 SIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred EEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 99965 467888899999999999999988766665 689999999999999999 9999999995 9999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 432 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
.+..+ -....|+..-...+|||. ||.|-+||+..+..+.++..|.. |
T Consensus 225 kn~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~-v------------------ 271 (307)
T KOG0316|consen 225 KNMEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST-V------------------ 271 (307)
T ss_pred cccee---eeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-e------------------
Confidence 98643 245677777788888876 99999999999999999988874 0
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 433 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 433 ~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|.+|+|.|--..+.++...+ +.+|
T Consensus 272 --------------~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 272 --------------IVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred --------------eEEeeecccCccceeEecCCc-eece
Confidence 489999999888887776443 4455
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=255.24 Aligned_cols=277 Identities=13% Similarity=0.108 Sum_probs=232.7
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
.+-||+.|+.+.++ ...++|+ -.+.+++|++.|.+||+|+.- +-+-+..|=|.+.+++++ ... .
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G----~k~------G 434 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVLG----TKN------G 434 (888)
T ss_pred eccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEEe----ccC------C
Confidence 35599999999999 3334443 367899999999999999963 468899999999988874 344 5
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-----CCeEE--------EEEc-CC
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTML--------YSIS-DK 227 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-----tg~~l--------~tl~-~~ 227 (474)
.+.+.|+..+.+..+.+. |-+.+|+++-+ |||+.+++||.|.|||+||.+ .|+.- .+|. .+
T Consensus 435 el~vfdlaS~~l~Eti~A----HdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRA----HDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred ceEEEEeehhhhhhhhhc----cccceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 777888888887655442 33566699998 799999999999999999964 23321 2232 46
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.|.+|++||++.+++.+ =-|.|+|++-+.|=+.--+|-||.=+|.+++.+ ||...++++|.|++||||-+.=|.|-+
T Consensus 510 dvL~v~~Spdgk~LaVs--LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVS--LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred cEEEEEEcCCCcEEEEE--eccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhh
Confidence 89999999977666654 348999999998888888889999999999976 667777778999999999999999999
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.+-+|.+.|.+|-|.|+..+|-|++ |+.||-||-. =+++++|.+|..- ||.++.+|+|.+++|+|.
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh------- 654 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH------- 654 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC-------
Confidence 9999999999999999999999999 9999999985 8999999999986 799999999999999876
Q ss_pred ccCCCCeEEEEeC
Q 011970 386 MEGSAGSINVSSI 398 (474)
Q Consensus 386 ~~s~DgtIklWdi 398 (474)
|.+||+|.-
T Consensus 655 ----D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ----DKSIRLWER 663 (888)
T ss_pred ----CceeEeeec
Confidence 999999984
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=246.02 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=201.6
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc----------CCcEEEEEEc-CCceEEEEecCCCCccEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~----------~~~V~~vafS-pg~~la~~s~~s~D~tIk 253 (474)
-.|+.+..|| |||++|++||-||-|.|||..+|++.+-+. +..|.++.|| +..|||++ +.|+.||
T Consensus 213 KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG---sqDGkIK 288 (508)
T KOG0275|consen 213 KSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG---SQDGKIK 288 (508)
T ss_pred ccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc---CcCCcEE
Confidence 4577789998 899999999999999999999999765443 4689999999 67888876 6689999
Q ss_pred EEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 254 ILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 254 LWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+|.|+||+||+.|. .|...|.++.|+ .|+.++|+++.|.|+||--+.+|+|++.++||...|..+.|++||..++|+|
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999999999998 799999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 333 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 333 -D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
|+|||+|+. +++|+.||+--..- ..|++|-.-|.. ..++-+- ..+||.|-|+ .||.++++..
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCN-----------rsntv~imn~-qGQvVrsfsS 432 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCN-----------RSNTVYIMNM-QGQVVRSFSS 432 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEc-----------CCCeEEEEec-cceEEeeecc
Confidence 999999999 59999999854432 347888887754 3344333 3789999996 7999999854
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
-.. +.. +.-+...||.|..+|..++|+.+...
T Consensus 433 GkR----------EgG---------------------dFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 433 GKR----------EGG---------------------DFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCc----------cCC---------------------ceEEEEecCCCcEEEEEccCcEEEEE
Confidence 321 111 45568899999999999999987654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=251.60 Aligned_cols=255 Identities=11% Similarity=0.081 Sum_probs=189.1
Q ss_pred eeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCc--cc-
Q 011970 104 LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSG--FA- 178 (474)
Q Consensus 104 ~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~--~~- 178 (474)
|+.+++++||+..+...+..|.+ |...|.+|+|+|+ ++.|||+| .| .+++||+++.+.. ... .+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS----~D------gtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGS----ED------LTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEe----CC------CeEEEEECCCCCccccccccce
Confidence 66789999999888889999997 7789999999997 78999976 55 6999999986532 110 01
Q ss_pred -eeeeccccCceEEEEeCCCCeE-EEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 179 -LFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 179 -lf~~~~~~~~~~V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
.+. +|...+..|+|+ |++.. ||+++.|++|+|||+.+++.+.++. ...|.+++|+|++.+++++ +.|++|+||
T Consensus 119 ~~L~-gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~--s~D~~IrIw 194 (568)
T PTZ00420 119 CILK-GHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGT--CVGKHMHII 194 (568)
T ss_pred EEee-cCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEE--ecCCEEEEE
Confidence 122 245678899998 67764 6899999999999999999887775 4679999999855444442 458899999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEE----ecCCCeEEEEeCCC----cEEEEECCC-CceEEeccc--cCCceEEEEEcCC
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFI----EQFNEKLLVKQENE----NLQILDVRN-AELMEVSRT--EFMTPSAFIFLYE 324 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~----~~~~~~ll~~~~D~----tIkIWDv~t-g~~~~~l~~--h~~~v~sv~Fspd 324 (474)
|+++|+++.++.+|.+.+....+. .+++++|++++.|+ +|+|||+++ ++++.+... +...+..+.++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 999999999999987765333322 25678899887664 899999995 667765433 3334444555778
Q ss_pred CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 325 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
|.++++|+ |++|++|++. +. +..+....... .+.+++|.|+.-+=+.-|
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~---p~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCS---PFRSFGFLPKQICDVYKC 325 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCc-EEeecccccCC---CccceEEccccccCchhh
Confidence 99999998 9999999996 54 33333222211 257899999866544444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=230.99 Aligned_cols=238 Identities=16% Similarity=0.242 Sum_probs=198.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...|.+++|+ +||+.|+++++|-+++|+|..+|+++.++... .|.-+.|.-....++.++...|.+||+.++.+-+.
T Consensus 14 ~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4567799998 79999999999999999999999999999853 78999999433344454556789999999999999
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
|+.|.||...|.++.-+ |-++.+++++.|++||+||++..+|.-.+.-. ....+||.|+|-+||.+. ...|||+|+
T Consensus 93 lRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999987 55799999999999999999999987664422 234578999999999998 559999998
Q ss_pred C---CcEEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 342 R---GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 342 ~---G~ll~tl~----gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
+ ...-++|. .+..| +.+.|||||++|.-+.. .+-|.|-|.-+|..+.++.+|.+
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew------~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~-- 230 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEW------TDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPN-- 230 (311)
T ss_pred cccCCCCceeEccCCCCccce------eeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccC--
Confidence 4 34555554 34444 78999999999998765 88999999999999999999985
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+.. . -+..|+|||+.+.+|+.||+|++|+.
T Consensus 231 ~~~~----------------------------~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 231 AGNL----------------------------P-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCc----------------------------c-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 1000 2 35799999999999999999999973
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=245.56 Aligned_cols=274 Identities=12% Similarity=0.121 Sum_probs=222.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|+.+|-.|.|- .++||+++.|..|++|+..-++ .+.+|-| ....|.++.|-++|..+|.+| .| ..
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas----~d------~~ 242 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAAS----ND------KN 242 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeec----CC------Cc
Confidence 55555555555 6999999999999999988776 7888887 457799999999999998865 55 68
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLL 241 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la 241 (474)
.+||++..+++..++.. |..-+.++.|.- ..-.+++|+.|.|||+||+..+.|.+++- ...+.+|.-++ . ..
T Consensus 243 ~r~Wnvd~~r~~~TLsG----HtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-~-~~ 315 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSG----HTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-S-DV 315 (459)
T ss_pred eeeeeccchhhhhhhcc----cccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecc-e-ee
Confidence 99999999988665433 334455777863 33339999999999999999999998764 67788888772 2 22
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC----CceE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPS 317 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~----~~v~ 317 (474)
++ +..|++||+||++++.+..+.+.+ +.|.+|+.+ +++-.+++.+.|.++++.|+++.+..+++.... ...+
T Consensus 316 ~S--gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 IS--GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred ee--cccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 22 577999999999999999999976 499999977 677888899999999999999999888764422 2367
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
.+.||||+.++|+|| ||.|+||++ .|+|...+...... ..|.+++|+|-|..|+++++ ++.+.|
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~l 457 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTL 457 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEe
Confidence 889999999999999 999999999 59998888765432 13899999999999999876 999999
Q ss_pred E
Q 011970 396 S 396 (474)
Q Consensus 396 W 396 (474)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=230.65 Aligned_cols=280 Identities=12% Similarity=0.132 Sum_probs=219.2
Q ss_pred EEEEEeeCCC-E--EEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 133 RSLFYNKNND-S--LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 133 ~sv~fspdg~-~--Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
++|-|||.-+ . +|++..||- +-+..+.|-++.+++-+....-|.. ..-...|++++.+..+++.++.||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl-----~G~G~L~ile~~~~~gi~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGL-----AGNGRLFILEVTDPKGIQECQSYDT--EDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhccc-----ccCceEEEEecCCCCCeEEEEeeec--ccceeEeeecCCCcceEEEEecCce
Confidence 6889999733 2 344444442 2345666666554443221111221 1234468999777778889999999
Q ss_pred EEEeecCCC-eEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 210 YKVFDLKNY-TMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 210 iKlWdl~tg-~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
+||||+.-. .++..++ ..+|.+|.+++ ...++++ |=|+|||||+..-++-++||+||...|..++|+|..+.
T Consensus 85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN 161 (311)
T ss_pred EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC
Confidence 999996533 3666665 45899999996 5556665 44899999999999999999999999999999988788
Q ss_pred eEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEc-CCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCC
Q 011970 285 KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~ 359 (474)
.+++.|.|++++|||++. |+.+. ...|...+.+..|+ ++-.+++|++ |++||.||++ ...+..|.||...
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---- 236 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---- 236 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----
Confidence 888889999999999996 55555 67788899999998 8889999999 9999999995 6789999999987
Q ss_pred CeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 360 NTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 360 ~v~svafSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
|+.|.|||- -.+|||+|. |=|+||||.+.+ -|+.+..-|+.
T Consensus 237 -VRkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~HtE------------------------- 279 (311)
T KOG0277|consen 237 -VRKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHTE------------------------- 279 (311)
T ss_pred -EEEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccce-------------------------
Confidence 799999996 578898877 999999998744 46777777764
Q ss_pred cccccccccCEEEEEEcC-CCCEEEEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtVklWd 473 (474)
-|..+.||+ ++..+|+.+.|+++.||+
T Consensus 280 ---------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 ---------FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ---------EEeccccccccCceeeecccccceeeec
Confidence 777888887 566899999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=239.65 Aligned_cols=303 Identities=10% Similarity=0.096 Sum_probs=232.4
Q ss_pred hcccccceeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccce---eeEeecCCCceEEE
Q 011970 60 FRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRS 134 (474)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~---l~~l~g~~~~~i~s 134 (474)
|.++-|...+..++....+.-..-.--|...|+=+.|| |.+|||+|.|.|.-+|.+.--.. .+||-| |...|--
T Consensus 196 ldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~y 274 (519)
T KOG0293|consen 196 LDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSY 274 (519)
T ss_pred cchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEE
Confidence 34455554444444443332111122388999999999 99999999999999999776554 789997 6688999
Q ss_pred EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEee
Q 011970 135 LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (474)
Q Consensus 135 v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWd 214 (474)
|.||||..+|.+++. + ..+++||+.+|.+.. ++..++-..+-++++- |||+.+++||.|++|--||
T Consensus 275 i~wSPDdryLlaCg~----~------e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGF----D------EVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred EEECCCCCeEEecCc----h------HheeeccCCcchhhh---hcccCcCCCcceeEEc-cCCceeEecCCCCcEEEec
Confidence 999999999999763 3 358999999999833 4554322345578997 8999999999999999999
Q ss_pred cCCCeEEEEEcCC---cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe
Q 011970 215 LKNYTMLYSISDK---HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 215 l~tg~~l~tl~~~---~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
+ +|+.+....+- .|+++|+++ |..+++. ..|..|+|.+.++..+......+ +.+.+...+ -++...|+.=
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v---~~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL 414 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITYDGKYVLLV---TVDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNL 414 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcCCCcEEEEE---ecccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEc
Confidence 7 67777777653 499999996 5555554 34889999999998777555433 677787765 4555566667
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEE--EEEc-CCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEE
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSA--FIFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~s--v~Fs-pdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~sva 365 (474)
.+..|++||++..++++...||...-.- -.|- .+..++|||| |+.|.||+. +|+++.+|.||..- ||.|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVs 489 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVS 489 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEe
Confidence 9999999999988888877777653322 2366 4558999999 999999999 59999999999975 79999
Q ss_pred ECCC-CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 366 ITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 366 fSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++|. -..+||+|. |||||||-..
T Consensus 490 wNP~~p~m~ASasD-----------DgtIRIWg~~ 513 (519)
T KOG0293|consen 490 WNPADPEMFASASD-----------DGTIRIWGPS 513 (519)
T ss_pred cCCCCHHHhhccCC-----------CCeEEEecCC
Confidence 9994 567888776 9999999753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=240.53 Aligned_cols=270 Identities=17% Similarity=0.217 Sum_probs=216.9
Q ss_pred ceEEEEEEeeCCC--EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 130 EVIRSLFYNKNND--SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~--~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+.|.+|.|||..- .-++.| -.+.|.+...-...+++.=|.. . +.++.|- .||++||.|...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S------------~rvqly~~~~~~~~k~~srFk~--~--v~s~~fR-~DG~LlaaGD~s 89 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS------------VRVQLYSSVTRSVRKTFSRFKD--V--VYSVDFR-SDGRLLAAGDES 89 (487)
T ss_pred CcceeEecCCCCCCceEEecc------------cEEEEEecchhhhhhhHHhhcc--c--eeEEEee-cCCeEEEccCCc
Confidence 6799999999532 223333 3556666555555554444553 2 3389997 699999999999
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|-|||+|+++-..|..+ |...|..+.|+| +++++++ +++|+.+|+||+.++.....+.+|.+.|++.+++|..+.
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s--~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS--GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe--cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 99999997764455555 457899999998 6666655 477899999999999987799999999999999976555
Q ss_pred eEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC--CcEEEEeccCCCCcCCCCe
Q 011970 285 KLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNT 361 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~--G~ll~tl~gH~~~~~~~~v 361 (474)
.+++||.||+||+||.++. ..+..+ .|..+|..+.|.|.|.++||++-..||+||+. |+++..+..|.-. |
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt-----V 241 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT-----V 241 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce-----E
Confidence 6777899999999999987 444333 47779999999999999999998899999994 6778888878765 7
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 362 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 362 ~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
.++.+..|++.|.|++- |+.+|++|+.+=|.+..+.=-.
T Consensus 242 TcL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~~~------------------------------ 280 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKYPG------------------------------ 280 (487)
T ss_pred EEEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeeccc------------------------------
Confidence 89999999999999876 9999999987777776663322
Q ss_pred cccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 442 GEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
+|.+++.|||++.+|-|-.||.+-
T Consensus 281 -----pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 281 -----PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred -----ceeeEEecCCCceEEEecccceee
Confidence 899999999999999999999874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=246.48 Aligned_cols=279 Identities=14% Similarity=0.214 Sum_probs=220.6
Q ss_pred cccccceeecccCCCCCcccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceee--EeecCCCceEEE-EE
Q 011970 61 RNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRS-LF 136 (474)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~--~l~g~~~~~i~s-v~ 136 (474)
.+++|-.+...|+.-+ +.+++- +-.++++|.|||+|+|+-.-++.+- ++.+ |.+.|.. +.
T Consensus 2 ~~Y~ls~~l~gH~~DV---------------r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~ 65 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDV---------------RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSIC 65 (745)
T ss_pred CcceeEEEeccCccch---------------heeEecCCeEEeecCCCCceeeeeccCcccccceeccc-Ccceeeccce
Confidence 3456666777776544 333333 4679999999999999976566554 4555 5577766 88
Q ss_pred Eee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 137 YNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 137 fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
|-+ |+..|.++ +.| .++-+|..-++.+.. .|++|+ .-|-+++-. .++. |.|||.|.|+|+|-
T Consensus 66 y~e~~~~~l~~g----~~D------~~i~v~~~~~~~P~~--~LkgH~--snVC~ls~~-~~~~-~iSgSWD~TakvW~- 128 (745)
T KOG0301|consen 66 YAESDKGRLVVG----GMD------TTIIVFKLSQAEPLY--TLKGHK--SNVCSLSIG-EDGT-LISGSWDSTAKVWR- 128 (745)
T ss_pred eccccCcceEee----ccc------ceEEEEecCCCCchh--hhhccc--cceeeeecC-CcCc-eEecccccceEEec-
Confidence 864 55557764 466 677788877777655 355553 344577754 4664 99999999999996
Q ss_pred CCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 216 KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 216 ~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
.|+|.+++.+ ..||+|++=|.+.++++ +.|++||||. .|+++++|.+|.+-|+.+++.+ +..+|+++.||
T Consensus 129 -~~~l~~~l~gH~asVWAv~~l~e~~~vTg---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg 200 (745)
T KOG0301|consen 129 -IGELVYSLQGHTASVWAVASLPENTYVTG---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDG 200 (745)
T ss_pred -chhhhcccCCcchheeeeeecCCCcEEec---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCc
Confidence 6788888875 46999999998888876 6699999998 5899999999999999999974 56899999999
Q ss_pred cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 294 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
.||+||+ +|+++....||+..++++...+++++++|.+ |+|+++|+.. +|++.++-.. ..||++.+-++|++
T Consensus 201 ~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPt-----tsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPT-----TSIWSAKVLLNGDI 273 (745)
T ss_pred eEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCc-----cceEEEEEeeCCCE
Confidence 9999998 9999999999999999999888888999988 9999999965 9999887333 23899999999998
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++-+| ||-||||...
T Consensus 274 vvg~S------------DG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGS------------DGRVRVFTVD 288 (745)
T ss_pred EEecc------------CceEEEEEec
Confidence 77543 9999999864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=252.79 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=194.4
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--------------------------------C---e---------
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------------------------------Y---T--------- 219 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------------------------------g---~--------- 219 (474)
|-+.|++..|| +|||+||+|++|+.||||-+.. . +
T Consensus 266 h~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 266 HKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred cCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46778899998 7999999999999999998765 0 0
Q ss_pred --E--------------EEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 220 --M--------------LYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 220 --~--------------l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
+ ++.+ |...|.+|.+|..+.||++ |.|+|||||++..-+||++|. |..-|.+|+|.|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 0 0001 1246999999999999986 779999999999999999998 5689999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCc-EEEEeccCCC---Cc
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSFEDHLL---WH 356 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~-ll~tl~gH~~---~~ 356 (474)
|+.++++|+-|+-||||++...+-.....-| .-|+|++|+|||+..+-|+ +|.+++++.+|. +++.+.=|.. -.
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999988876654444 6899999999999999999 999999999765 4444431111 00
Q ss_pred CCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 357 PDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 357 ~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
..-.|..+.|.|-. ++|++. +|..|||.|..+-+.+.+|+|+.+. +
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~----------~---------- 547 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT----------S---------- 547 (712)
T ss_pred cCceeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC----------C----------
Confidence 00127788888744 377763 4999999999888999999998851 0
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.=.+..|++||+.|++|++|.-|.||++
T Consensus 548 ------------SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 548 ------------SQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ------------cceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2235799999999999999999999985
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=242.74 Aligned_cols=255 Identities=13% Similarity=0.106 Sum_probs=219.1
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPG 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg 237 (474)
..+.+|+-.+|+. ..|+..+ ...+.+|.++ ++|++||.|-.+|+|.|||.++.+.+.++. ...|-+++++ +
T Consensus 197 ~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 197 QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-C
Confidence 6889999999985 2356552 3567799998 799999999999999999999888776664 4579999999 3
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..+.++ +.|+.|..+|+..++.+.. +.+|.+.|-.+.|+ +++.++++|+.|+.+.|||....+.+..+..|...|
T Consensus 271 ~~lssG---sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 271 SVLSSG---SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred ceEEEe---cCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 334443 5689999999999988776 88999999999997 678888889999999999998888888999999999
Q ss_pred EEEEEcC-CCcEEEEEc---CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 317 SAFIFLY-ENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 317 ~sv~Fsp-dg~llaS~s---D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+++|+| ...+||+|. |++|++||. +|+++.+...... |-++.|+|..+-|+++-. -.++
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------VcsL~Wsk~~kEi~sthG---------~s~n 411 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------VCSLIWSKKYKELLSTHG---------YSEN 411 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------eeeEEEcCCCCEEEEecC---------CCCC
Confidence 9999997 677888874 999999999 5999998875544 789999999987777642 3477
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|.||+..+=+.++.+.||+. .|..++.||||..|+||+.|+|+|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~----------------------------------RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTS----------------------------------RVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cEEEEeccccceeeeecCCcc----------------------------------eeEEEEECCCCCEEEEecccCcEEe
Confidence 899999999999999999996 8999999999999999999999999
Q ss_pred ccC
Q 011970 472 WSN 474 (474)
Q Consensus 472 Wd~ 474 (474)
|+.
T Consensus 458 w~~ 460 (484)
T KOG0305|consen 458 WNL 460 (484)
T ss_pred ccc
Confidence 973
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=232.62 Aligned_cols=251 Identities=15% Similarity=0.181 Sum_probs=199.6
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCc
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGI 238 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~ 238 (474)
.+.|+|++.=.+.+...-|. |-.||-+|.-. ++.+.+|+.||++++||+ .|++.+++. .+.|.+++.- ++.
T Consensus 84 ~leIEYv~~~~aP~pl~~~~--hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 84 ILEIEYVEAITAPKPLQCFL--HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS 157 (423)
T ss_pred eeEEEEEEecCCCCcccccc--chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC
Confidence 66778875433322212233 34677787653 689999999999999996 577777665 5678877765 544
Q ss_pred e---EEEEecCCCCccEEEEecCCCeEE----EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---------
Q 011970 239 M---LLIFNRSSSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------- 302 (474)
Q Consensus 239 ~---la~~s~~s~D~tIkLWdi~tG~~L----~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--------- 302 (474)
. ++++ +.|+|++||-++-|+.. +.-.||-..|.+|+.. +++.++++++.|.+|+||++.+
T Consensus 158 ~~~~fvsa---s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 158 SSCLFVSA---SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ccceEEEe---cCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCcccccccc
Confidence 3 6665 77999999999888653 3334899999999975 6788999999999999999332
Q ss_pred ----------------CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEE
Q 011970 303 ----------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 364 (474)
Q Consensus 303 ----------------g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~sv 364 (474)
+..+-++.||...|++|.|++ ...+.|+| |.|||.||+. |.++.++.+... .++|
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i 306 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCI 306 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEe
Confidence 224567899999999999999 44566777 9999999995 999999988765 5899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 365 afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
..+|..++||+||. |.-|||||-.+|. ..++|.||++
T Consensus 307 ~~~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n----------------------------- 346 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN----------------------------- 346 (423)
T ss_pred ecccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-----------------------------
Confidence 99999999999886 9999999998764 3589999997
Q ss_pred cccccCEEEEEEcCCCC-EEEEEcCCCcEEEccC
Q 011970 442 GEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~-~LaSgs~DgtVklWd~ 474 (474)
+|.+|-++|... +|+|||.|+++||||.
T Consensus 347 -----wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 -----WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred -----hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 999999999875 5999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=225.76 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=223.8
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec------------cCCCCCccceeee--ccc
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFES--ESL 185 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~------------~G~~~~~~~lf~~--~~~ 185 (474)
.-++|.- |..+.|+-+|||||..+||+|+|. .|+|-|++ .|...+.-|+-.. +|.
T Consensus 104 Et~ylt~-HK~~cR~aafs~DG~lvATGsaD~----------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTS-HKSPCRAAAFSPDGSLVATGSADA----------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEee-cccceeeeeeCCCCcEEEccCCcc----------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 4567774 889999999999999999977554 66677764 3333333233322 355
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
.-+..++|. |-..+|+|||.|+||||||...-. -.+.++ .+.|.+|.|+| |..|+++ -.+-+++|+|++|-
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTY 248 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe---cCCCceeEEeccce
Confidence 666789998 788999999999999999986433 234455 37899999999 6666665 33567999999999
Q ss_pred eEEEEEe---ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-ccC-CceEEEEEcCCCcEEEEEc-CC
Q 011970 261 TVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEF-MTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 261 ~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~-~~v~sv~Fspdg~llaS~s-D~ 334 (474)
||...-+ +|...|..|.+++ .+...++++.||.|||||=-+++|++++. .|. ..|-+..|..+|++++|++ |.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 9987665 6888999999984 45566668999999999999999999863 354 4788899999999999999 99
Q ss_pred cEEEEeC-CCcEEEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCC
Q 011970 335 TVAVWNF-RGELVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NAT 410 (474)
Q Consensus 335 tIklWd~-~G~ll~tl~gH~~--~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH 410 (474)
+||||.+ +|.+++++.|-.. .+. - -....|....+|++.-.. ..+.+--||..|+.-++.+ -||
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~-~-rtqAvFNhtEdyVl~pDE----------as~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQK-H-RTQAVFNHTEDYVLFPDE----------ASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchh-h-hhhhhhcCccceEEcccc----------ccCceeeccccchhhhhhcccCC
Confidence 9999999 5999998887521 100 0 123447777777776432 1466778999888766655 478
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++ .|..+.-||.+.-..|+|.|-.+|+|-
T Consensus 396 n~----------------------------------a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 396 NG----------------------------------AVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CC----------------------------------CceEEEeCCCCCceeeecccceeeeee
Confidence 76 788899999999999999999999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=225.15 Aligned_cols=293 Identities=16% Similarity=0.108 Sum_probs=232.8
Q ss_pred eeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSL 144 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~L 144 (474)
-.+++++.+..+ -.+ -|..+|.++.|+ |.+||+|.-+|.+++|...||..-+.|-. .-+-|-=+.+.|-+..|
T Consensus 89 flW~~~~ge~~~--elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 89 FLWDISTGEFAG--ELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEEccCCccee--Eec--CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEE
Confidence 345777776322 122 388899999999 99999999999999999999999998864 33446778999999998
Q ss_pred EEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE
Q 011970 145 ITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (474)
Q Consensus 145 is~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl 224 (474)
+.++ .| ..+..|.|..+..- ++|.. |......=+|. ||||.++++..|+||++||++||+.++.+
T Consensus 164 lAG~----~D------GsvWmw~ip~~~~~---kv~~G-h~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 164 LAGS----TD------GSVWMWQIPSQALC---KVMSG-HNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred Eeec----CC------CcEEEEECCCccee---eEecC-CCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEe
Confidence 8754 55 68888999884322 35553 33333345898 78999999999999999999999999998
Q ss_pred cC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--------ecCcceeEEEEEecCCC-eEEE-EeC
Q 011970 225 SD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--------HLLHRNKKVDFIEQFNE-KLLV-KQE 291 (474)
Q Consensus 225 ~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--------~h~~~v~~V~F~~~~~~-~ll~-~~~ 291 (474)
.+ ..-..+.++-.+.+++. ++.++.+++-+..+|+.+..++ .+.+.+.+|.|++..-. .|++ |+.
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred cccccCcCCccccccccceeEe--ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 73 34667888854444443 3558899999999999999888 45566778888743322 2333 689
Q ss_pred CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 292 D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
||+|-|||..+..+..... |...|..+.|.+ ..+|++++ ||+|++||.+ |+|+.++.||+.. |...+++||
T Consensus 307 dG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~ 379 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQ 379 (399)
T ss_pred cceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCC
Confidence 9999999999988877765 556799999999 66777777 9999999996 9999999999987 689999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+++++++|. |++.+++++.
T Consensus 380 ~~~vvT~s~-----------D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSD-----------DNTALVFEVP 398 (399)
T ss_pred CcEEEEecC-----------CCeEEEEecC
Confidence 999999987 9999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=247.17 Aligned_cols=229 Identities=15% Similarity=0.235 Sum_probs=199.6
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCC-Ce-----EEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~-----~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
.+.-|.|+|++|-+|+.|++|++|+... .. ++.++. .+||.+++..- +..|+++ |+|-|||+|+.+.+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~---SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA---SSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe---cCCceEEEeecccC
Confidence 4556678999999999999999999753 11 344553 47999999995 5566654 66899999999988
Q ss_pred --eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--E--------Eecc-ccCCceEEEEEcCCCcE
Q 011970 261 --TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--M--------EVSR-TEFMTPSAFIFLYENQL 327 (474)
Q Consensus 261 --~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~--------~~l~-~h~~~v~sv~Fspdg~l 327 (474)
-|+.++..|.+.|.+++..++.++..++||-|+.|.|||+.+|.. + .-+. |+...++++|-.+.|..
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 689999999999999999888888888899999999999998832 2 1234 88999999999999999
Q ss_pred EEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 328 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+++|+ .+-+++||.+ ++.+..|.||+.- |+.+-.++||..++|+|. ||||||||+...+|++
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLA 249 (735)
T ss_pred EEecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceee
Confidence 99999 9999999995 8989999999974 899999999999999875 9999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
|+..|.. .||++.-+|+=+.+|+|++||.|..
T Consensus 250 T~~vH~e----------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 250 TYIVHKE----------------------------------GVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eEEeccC----------------------------------ceEEEeeCCCcceEEecCCCCcEEe
Confidence 9999996 8999999999999999999999865
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=209.40 Aligned_cols=298 Identities=11% Similarity=0.173 Sum_probs=228.9
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceee-eEEEEeEeccCCCCCccc---eeee--ccccCceEEE
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC-RSTKIEYIRRGKPDSGFA---LFES--ESLKWPGFVE 192 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~-~~~~iw~i~~G~~~~~~~---lf~~--~~~~~~~~V~ 192 (474)
+++.+|. ....|++|+|.|+|...|.+| .. .++++ ..-.+-+++.+..-.-+| +|.. -|.+.+..++
T Consensus 24 ~~i~~l~--dsqairav~fhp~g~lyavgs----ns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILE--DSQAIRAVAFHPAGGLYAVGS----NS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEec--chhheeeEEecCCCceEEecc----CC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 3566775 456799999999999888755 33 12221 111233444443322222 4443 1456677899
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeE-------EEEEcCCcEEEEEEc--C--CceEEEEecCCCCccEEEEecCCCe
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIS--P--GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-------l~tl~~~~V~~vafS--p--g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+| |+|++||+||.|++||+--.+.-+| ....++..|++++|- | ++.|++++ +.+|..|.+=|-.+|+
T Consensus 97 ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 97 WS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGRGQ 174 (350)
T ss_pred ec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCCCC
Confidence 98 7999999999999999986654443 345667899999998 3 56666554 3558999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-------cCCceEEEEEcCCCcEEEEEc-C
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-------EFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-------h~~~v~sv~Fspdg~llaS~s-D 333 (474)
.++.+.||.+++.++.-- .|-.+++++.|+|||.||++-..|+.++.. +...|.+|+.-|.|++|+|+- |
T Consensus 175 ~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 999999999999888743 356677789999999999999999988643 235788999999999999998 9
Q ss_pred CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 334 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 334 ~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
....|+|++ |..++.|.-|+.- |++|.|||--.||.++|. |..|||=|+ +|.+-+.|.
T Consensus 253 ssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdl-qgdla~el~---- 311 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDL-QGDLAHELP---- 311 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeec-ccchhhcCc----
Confidence 999999997 8899999999876 799999999999999987 999999997 465433221
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...|+|+-+.+-.+-|.|..-..+|.|.|.|+.||-
T Consensus 312 -------------------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 -------------------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred -------------------------eEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 122334444677899999999999999999999994
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-25 Score=212.52 Aligned_cols=281 Identities=11% Similarity=0.129 Sum_probs=230.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.+++ |...|.||+||-+|..|+++| .| +++++|.+..+++....... +|...+..+.++|++-..+|
T Consensus 15 ~~~~-~~~~v~Sv~wn~~g~~lasgs----~d------ktv~v~n~e~~r~~~~~~~~--gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 15 ELQG-HVQKVHSVAWNCDGTKLASGS----FD------KTVSVWNLERDRFRKELVYR--GHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred Hhhh-hhhcceEEEEcccCceeeecc----cC------CceEEEEecchhhhhhhccc--CCCcchhhheeCCCCCcceE
Confidence 3454 667899999999999999955 56 79999999888653321111 23445567899999999999
Q ss_pred EecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
+++.|++|++||...++|...+.. ..---+.+|| |+.++.+ +.|.-|-..|+++-+..++.+. ...+..+.|.
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~---~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~- 156 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG---NKDDRITFIDARTYKIVNEEQF-KFEVNEISWN- 156 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe---cCcccEEEEEecccceeehhcc-cceeeeeeec-
Confidence 999999999999999999988763 2333577886 7777766 3366788899988888776653 2456778887
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
.+|..+......|+|.|...-.-+.++.++.|.....+|.|+|+|++||+|+ |-.+.|||++ --|++.|.-|.-+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--- 233 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--- 233 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---
Confidence 5677777788889999999999999999999999999999999999999999 9999999995 8899999987654
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
|+.|.||-||++|||||. |..|-|=+++||.-+..++.-.
T Consensus 234 --VRTlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~~~--------------------------- 273 (313)
T KOG1407|consen 234 --VRTLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPCEG--------------------------- 273 (313)
T ss_pred --eEEEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeeccC---------------------------
Confidence 899999999999999876 9999999999999999986433
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcCC---------CcEEEc
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNRH---------GLVHVW 472 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~D---------gtVklW 472 (474)
...+|||+|....||-+..| |+||+.
T Consensus 274 --------~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 --------PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred --------CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 67899999999999977654 567764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=211.82 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=211.6
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC--
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-- 206 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-- 206 (474)
...|.+|.|+++|+.|+++| .+| +++|+|..+|+...++.-... -+.-+.|-.++. .+..+|.
T Consensus 14 ~~~i~sl~fs~~G~~litss---~dD-------sl~LYd~~~g~~~~ti~skky----G~~~~~Fth~~~-~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS---EDD-------SLRLYDSLSGKQVKTINSKKY----GVDLACFTHHSN-TVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEec---CCC-------eEEEEEcCCCceeeEeecccc----cccEEEEecCCc-eEEEccCCC
Confidence 35699999999999999865 344 999999999998554332222 134678875544 4455555
Q ss_pred CCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
|.|||.=+|.+.+.++.+.+ +.|.++..|| +.+++++ +.|++|||||++.-+|..-+.- ..-.-++|. |.|
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfD-p~G 152 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFD-PEG 152 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEec--CCCcceeEC-CCC
Confidence 99999999999999999875 5799999999 7777765 6699999999998888766652 223445664 556
Q ss_pred CeEEEEeCCCcEEEEECCCC--ceEEec---cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCc
Q 011970 284 EKLLVKQENENLQILDVRNA--ELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 356 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg--~~~~~l---~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~ 356 (474)
-.+|++...+.|||+|+++- ...+++ .+-......+-|||||+.++-+. .+.+.|-|. +|..+.+|++|...-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 66666766669999999973 233332 23345677899999999998887 889999998 899999999998742
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
. .--+..|+|||+++++|+. ||+|.+|++.||+.++.++| |..
T Consensus 233 ~--~~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~~----------------------- 276 (311)
T KOG1446|consen 233 N--LPLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNGG----------------------- 276 (311)
T ss_pred C--cceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCCC-----------------------
Confidence 1 1247889999999999876 99999999999999999999 443
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.+..+-|+|---++||++. .+-+|
T Consensus 277 -----------~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 277 -----------PVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred -----------CccccccCCceeeeeecCc--eEEEE
Confidence 6778889999998988764 34444
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=235.53 Aligned_cols=290 Identities=13% Similarity=0.119 Sum_probs=231.0
Q ss_pred eecccCCCCCcccccccccccccEEEEEee---ccEEEEeeCCCeEEeeeccc-cceeeEeecCCCceEEEEEEeeCCCE
Q 011970 68 EYDTHDPKGHCPFVLPFLMKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-g~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
.+.++-|+-..+. .+. |+..|.+|-+. +-+|+|++.|+.|+||++-. ++|++|+.| |...|+++.||++|..
T Consensus 197 ~~rc~~Pkk~~~~-~~g--H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 197 EERCYLPKKLSHN-LSG--HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTS 272 (503)
T ss_pred cceeeccHhheee-ccC--CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCe
Confidence 4455555555433 333 78888888887 89999999999999999876 999999997 8899999999999999
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEE
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLY 222 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~ 222 (474)
+.|+| .| +.+++||+.+|++... |+.+ .-|..|.|. ||+ .++..|..|+.|+.||+.+|+.++
T Consensus 273 fLS~s----fD------~~lKlwDtETG~~~~~---f~~~--~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 273 FLSAS----FD------RFLKLWDTETGQVLSR---FHLD--KVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred eeeee----cc------eeeeeeccccceEEEE---EecC--CCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99976 77 8999999999998542 4443 345689998 565 889999999999999999999776
Q ss_pred EEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEE
Q 011970 223 SIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298 (474)
Q Consensus 223 tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW 298 (474)
..- -..|.+|.|=| |..++++ ++|++++||+...+-.++-.. .+.|...+|.-. |++..+++-+.|+.|-|+
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcCCCccchhhcchhhccCcceecC-CCCCeehhhccCceEEEE
Confidence 553 35799999998 5555554 668999999999887776544 456777788866 445555555799999999
Q ss_pred ECCCCc---eEEeccccCCceE--EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC-
Q 011970 299 DVRNAE---LMEVSRTEFMTPS--AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ- 370 (474)
Q Consensus 299 Dv~tg~---~~~~l~~h~~~v~--sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg- 370 (474)
.+...- ..+.+.||...-+ .+.|||||.+|+||+ ||.+-+||.. -+++..|..|... +..+.|.|.-
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~-----ci~v~wHP~e~ 487 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP-----CIGVDWHPVEP 487 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc-----eEEEEecCCCc
Confidence 865432 2356788875544 567999999999998 9999999995 8899999999776 5689999964
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEe
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
..+|+++. ||.||+||
T Consensus 488 Skvat~~w-----------~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGW-----------DGLIKIWD 503 (503)
T ss_pred ceeEeccc-----------CceeEecC
Confidence 56676655 99999996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=228.62 Aligned_cols=308 Identities=18% Similarity=0.242 Sum_probs=220.2
Q ss_pred ccCCCCCccccccccccccc-EEEEEee--ccEEEEeeCCCeEEeeecc----ccceeeEeecCCCceEEEEEEeeCCCE
Q 011970 71 THDPKGHCPFVLPFLMKRTK-VIEIVAA--RDIVFALAHSGVCAAFSRE----TNRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~-V~~i~~s--~~~las~s~dgtiklW~~~----tg~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
.|..|..+-+. |.|-++ |.++++- |-.+++||.|-+|++||.+ +.+-.+.|+......|+|+.|||.|++
T Consensus 152 ~~~IP~shEi~---l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 152 IKLIPGSHEIQ---LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred hhcCCccceEe---ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 34456655333 344554 5555555 9999999999999999977 234566788777789999999999999
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCC-------CCccc-eee-eccccCceEEEEeCCCCeEEEEecCCCcEEEee
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKP-------DSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-------~~~~~-lf~-~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWd 214 (474)
|..+| |+ -+++|.| +.|.. ++.+. +.. .+|+.-+.+.+|.|.+-+.+.++|.|+|+|+||
T Consensus 229 iLvvs--g~--------aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 229 ILVVS--GS--------AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred EEEEe--cC--------cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 98766 32 3677777 66654 11111 111 133333445688866666778888888888888
Q ss_pred cCCCe-EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 215 LKNYT-MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 215 l~tg~-~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
+.+-+ .+..+... | +. +.--.+.+.+|+ +++..++++..||
T Consensus 298 v~~~k~q~qVik~k--------~---------------------~~--------g~Rv~~tsC~~n-rdg~~iAagc~DG 339 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTK--------P---------------------AG--------GKRVPVTSCAWN-RDGKLIAAGCLDG 339 (641)
T ss_pred cCCchhheeEEeec--------c---------------------CC--------CcccCceeeecC-CCcchhhhcccCC
Confidence 86533 11111100 0 00 001134566776 5666677778999
Q ss_pred cEEEEECCCCc---eEEeccccCC--ceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEE
Q 011970 294 NLQILDVRNAE---LMEVSRTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 294 tIkIWDv~tg~---~~~~l~~h~~--~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~sva 365 (474)
.||+||..+.- -+.+-..|.. .+++|+|||||++|+|=+ |+++||||++ .++|.+++|-....+ -.+++
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~ 416 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCC 416 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccc
Confidence 99999975422 2334456877 999999999999999988 9999999994 889999988776554 35689
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccc
Q 011970 366 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 445 (474)
Q Consensus 366 fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 445 (474)
||||.++|++|..+ +++. ..|++-++|-.|=+.+++|.-.+.
T Consensus 417 FSPd~kli~TGtS~-~~~~----~~g~L~f~d~~t~d~v~ki~i~~a--------------------------------- 458 (641)
T KOG0772|consen 417 FSPDDKLILTGTSA-PNGM----TAGTLFFFDRMTLDTVYKIDISTA--------------------------------- 458 (641)
T ss_pred cCCCceEEEecccc-cCCC----CCceEEEEeccceeeEEEecCCCc---------------------------------
Confidence 99999999998753 3332 257899999998888988855443
Q ss_pred cCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 446 EDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 446 ~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|..+.|+|-=+.|.-|+.||++||+
T Consensus 459 -Svv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 459 -SVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -eEEEEeecchhhheeeecCCCceEEE
Confidence 68889999999999999999999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-25 Score=212.57 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=211.5
Q ss_pred CcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecC-CCceEEEEEEeeCCC-EEEEEEeecCCC
Q 011970 77 HCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVS-PDEVIRSLFYNKNND-SLITVSVYASDN 154 (474)
Q Consensus 77 ~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~-~~~~i~sv~fspdg~-~Lis~S~~~s~d 154 (474)
++.-|+||+-.|-.|- .++. +-..-.|++-|-++..++.|..++-+ .++.+..|++|++.+ .+|+++ .|
T Consensus 12 ysvqfSPf~~nrLavA---t~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~----GD 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVA---TAQH--YGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS----GD 82 (311)
T ss_pred ceeEecccccchhhee---ehhh--cccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe----cC
Confidence 4455677744443222 2211 12334678888887556666655543 346799999999865 566666 33
Q ss_pred ccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEE
Q 011970 155 FSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEI 232 (474)
Q Consensus 155 ~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~v 232 (474)
.+++|||. +..-.-+..|+ ||-.-|.+|.+.+.+++.++++|.|+||||||..-++-+.|+.+ .-|...
T Consensus 83 ------GSLrl~d~--~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 83 ------GSLRLFDL--TMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred ------ceEEEecc--CCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 48889994 33322122344 35566778999988999999999999999999988888888875 459999
Q ss_pred EEcC--CceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCc-eEE
Q 011970 233 KISP--GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAE-LME 307 (474)
Q Consensus 233 afSp--g~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~-~~~ 307 (474)
+||| .+.+|+. |+|++++|||++. |+.+. ++-|...+.+.+|+-. +..+++ ++.|+.||+||+++-+ .+-
T Consensus 154 ~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 154 AFSPHIPNLFASA---SGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred ecCCCCCCeEEEc---cCCceEEEEEecCCCceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccce
Confidence 9998 6776664 6799999999974 66655 8888889999999854 555555 6899999999999844 567
Q ss_pred eccccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-C-cEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCc
Q 011970 308 VSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPE 382 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~ 382 (474)
.+.+|.-.|+.|.|||- -.+|||+| |=|++|||.. + .++.+.+-|+.. |..+.||+ ++.++||.+.
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW---- 299 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW---- 299 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-----EeccccccccCceeeeccc----
Confidence 78999999999999985 56788889 9999999995 4 478888888887 56677777 6788998766
Q ss_pred cccccCCCCeEEEEe
Q 011970 383 DQWMEGSAGSINVSS 397 (474)
Q Consensus 383 ~~~~~s~DgtIklWd 397 (474)
|++++|||
T Consensus 300 -------De~l~Vw~ 307 (311)
T KOG0277|consen 300 -------DELLYVWN 307 (311)
T ss_pred -------ccceeeec
Confidence 99999998
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=209.57 Aligned_cols=274 Identities=15% Similarity=0.182 Sum_probs=218.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|.-++.+|-+. ||+|++.+.|.+..+|=-..|++|-+..| |.+.||++..+.+.+.|+|+| .| .+++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGS----AD------~t~k 77 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGS----AD------QTAK 77 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeecc----cc------ceeE
Confidence 45556666666 99999999999999998888999999998 889999999999999999966 45 7999
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-----CCcEEEeecC-------CCeEEEEEc--CCcEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLK-------NYTMLYSIS--DKHVQ 230 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~-------tg~~l~tl~--~~~V~ 230 (474)
|||+++||..+ .|... ..+..|.|+ ++|.+++.+.. -+.|-++|+. .-++++.+. +..+.
T Consensus 78 LWDv~tGk~la---~~k~~--~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 78 LWDVETGKQLA---TWKTN--SPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEcCCCcEEE---EeecC--CeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999844 34432 345589998 78887776653 4589999987 344566665 46788
Q ss_pred EEEEcC-CceEEEEecCCCCccEEEEecCCCeEE-EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 231 EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 231 ~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L-~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
..-++| +..|+++ .+|+.|.+||+++|+.+ .+-+.|.+.+..+.|+ ++...+++++.|.|-||||+.+-+++++
T Consensus 152 ~a~Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 152 SALWGPLGETIIAG---HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred eeeecccCCEEEEe---cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEE
Confidence 888998 7777665 66899999999999654 5557888999999998 6788999999999999999999999999
Q ss_pred ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC--C-C------------cEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 309 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--R-G------------ELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 309 l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~-G------------~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
..... +|.+.+++|-...++-++ ..---|=.. + | |.+...+||=++ +|+|||+|||+.
T Consensus 228 y~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGks 301 (327)
T KOG0643|consen 228 YTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKS 301 (327)
T ss_pred eeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCcc
Confidence 88765 889999999777777665 211111111 1 4 345677899987 799999999998
Q ss_pred EEEEecCCCccccccCCCCeEEEEeC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-+||+. ||.|||--.
T Consensus 302 YsSGGE-----------DG~VR~h~F 316 (327)
T KOG0643|consen 302 YSSGGE-----------DGYVRLHHF 316 (327)
T ss_pred cccCCC-----------CceEEEEEe
Confidence 888754 999999754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=228.00 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=215.2
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
+++.+....+-||+-.+|+...-...+ .+.|.||.|+++|+.||. |..+ .++.|||+.+.+.... +.
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~~~--~~ 256 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKTRT--LR 256 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhcccccc--cc
Confidence 455556778999999999843333332 688999999999999998 4456 7999999977775442 22
Q ss_pred eeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-E--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-l--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
. .|...++.+++. +.+|.+|+.|+.|..+|+...+.+.. + |...|-.+++++ +.+||++ +.|..+.|||
T Consensus 257 ~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~Iwd 329 (484)
T KOG0305|consen 257 G-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFIWD 329 (484)
T ss_pred C-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEecc
Confidence 2 145677899994 67999999999999999988774433 4 356899999997 5555543 7799999999
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEE-EEc-
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR- 332 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla-S~s- 332 (474)
..+-+.+.++..|...|+.++|.|-..+.||+|+ .|++|++||+.+|+++...-.. ..|.+++|++..+=|+ +.+
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCC
Confidence 9888899999999999999999988788888863 8999999999999999875544 4799999998775444 444
Q ss_pred -CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 333 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 333 -D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
++.|.||+. +=+.+..|.||... |..++.||||+.|++|+. |.|+|+|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 889999999 58899999999987 789999999999999876 999999998763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=217.81 Aligned_cols=315 Identities=14% Similarity=0.196 Sum_probs=229.3
Q ss_pred CcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC
Q 011970 77 HCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (474)
Q Consensus 77 ~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d 154 (474)
.+.+.-.+.-|+..|+.|++. +.++.++|-|.|.+||.+++|+||.+..| |.+.|+||.|+|.|+.++++| .|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaS----GD 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTAS----GD 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEcc----CC
Confidence 344445566788899999988 78999999999999999999999999998 889999999999999999977 34
Q ss_pred ccceeeeEEEEeE------eccCCCCCccceeeeccccCc-eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--
Q 011970 155 FSSLKCRSTKIEY------IRRGKPDSGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-- 225 (474)
Q Consensus 155 ~s~Lk~~~~~iw~------i~~G~~~~~~~lf~~~~~~~~-~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-- 225 (474)
.+..||. ++....+... -..+...+- ..+.|- ||.. .+...+||+ ++..|.
T Consensus 212 ------~taHIW~~av~~~vP~~~a~~~h--SsEeE~e~sDe~~~d~--d~~~---~sD~~tiRv-------Pl~~ltgH 271 (481)
T KOG0300|consen 212 ------ETAHIWKAAVNWEVPSNNAPSDH--SSEEEEEHSDEHNRDT--DSSE---KSDGHTIRV-------PLMRLTGH 271 (481)
T ss_pred ------cchHHHHHhhcCcCCCCCCCCCC--Cchhhhhccccccccc--cccc---ccCCceeee-------eeeeeecc
Confidence 4777886 2222211110 000111110 011121 1110 112234543 344443
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA 303 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg 303 (474)
..-|-+..+-. |+.++++ +=|.|..|||+|+|++++.|.||.+...-+.-.| .++|++ ++.|-|.||||.+..
T Consensus 272 ~~vV~a~dWL~gg~Q~vTa---SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 272 RAVVSACDWLAGGQQMVTA---SWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred ccceEehhhhcCcceeeee---eccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhh
Confidence 34566666654 5555555 4489999999999999999999987776666543 577777 579999999999843
Q ss_pred c-eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 304 E-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 304 ~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
- -+.++.||++.|.++.|.-|.+ ++|+| |+|||+||++ ...+.|+.-... +|-|+++.-+.+||---.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~------~NRvavs~g~~iIAiPhD- 418 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSP------ANRVAVSKGHPIIAIPHD- 418 (481)
T ss_pred cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCc------cceeEeecCCceEEeccC-
Confidence 2 3568999999999999998776 56777 9999999994 667888875443 689999999999987433
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEec-----CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
...|||+|+ +|+-++.|. ||.. .|++++|.
T Consensus 419 ----------NRqvRlfDl-nG~RlaRlPrtsRqgHrR----------------------------------MV~c~AW~ 453 (481)
T KOG0300|consen 419 ----------NRQVRLFDL-NGNRLARLPRTSRQGHRR----------------------------------MVTCCAWL 453 (481)
T ss_pred ----------CceEEEEec-CCCccccCCcccccccce----------------------------------eeeeeecc
Confidence 678999996 798888775 4543 79999998
Q ss_pred CCCC--EEEEEcCCCcEEEccC
Q 011970 455 EERN--EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~--~LaSgs~DgtVklWd~ 474 (474)
++-. -|.|++.|..|-=|++
T Consensus 454 eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 454 EEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccCcccccccccccceeeeeEe
Confidence 8764 4899999999998864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=207.44 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=236.2
Q ss_pred chhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeec-CCCceE
Q 011970 54 SNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVI 132 (474)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i 132 (474)
.+++++|+ .++++|..+.++..++-+ |-.||+||.|+++++|+++-++++..++. +|...|
T Consensus 6 ~~~~~l~~-----r~~~~~~~~v~Sv~wn~~-------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv 67 (313)
T KOG1407|consen 6 PKFKSLKR-----RELQGHVQKVHSVAWNCD-------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV 67 (313)
T ss_pred cchhhhhh-----HHhhhhhhcceEEEEccc-------------CceeeecccCCceEEEEecchhhhhhhcccCCCcch
Confidence 34455555 456666666555444444 99999999999999999998877776654 355678
Q ss_pred EEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 133 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 133 ~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
--+.+.|. .+.++++| .| ++|++||+++||+... .+..+--..+.++ |+|++++.+..|..|-
T Consensus 68 dql~w~~~~~d~~atas----~d------k~ir~wd~r~~k~~~~-----i~~~~eni~i~ws-p~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATAS----GD------KTIRIWDIRSGKCTAR-----IETKGENINITWS-PDGEYIAVGNKDDRIT 131 (313)
T ss_pred hhheeCCCCCcceEEec----CC------ceEEEEEeccCcEEEE-----eeccCcceEEEEc-CCCCEEEEecCcccEE
Confidence 88888654 56788876 33 6999999999998442 2112222358898 7899999999999999
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE
Q 011970 212 VFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 212 lWdl~tg~~l~tl~~-~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
..|..+++.+.+.+. -.|.++.|+ ++.++... .+-++|.|..-..=+.+++++.|......|.|. |+|.++++|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt---~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~G 207 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT---NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATG 207 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEe---cCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeec
Confidence 999999988877764 478999999 67766554 335799999988889999999998888999997 789999999
Q ss_pred eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 290 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 290 ~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
+.|-.+-|||+..--|.+.+.-+.-+|+.+.||+||++|||+| |.-|-|=+++ |..+.... |.+. .++||++
T Consensus 208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWH 281 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWH 281 (313)
T ss_pred cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEec
Confidence 9999999999999999999988999999999999999999999 9999999995 99887775 3333 6899999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|..-+||=+|. |+++. ..-+.|++||+=+
T Consensus 282 Pk~~LLAyA~d-dk~~d-~~reag~vKiFG~ 310 (313)
T KOG1407|consen 282 PKRPLLAYACD-DKDGD-SNREAGTVKIFGL 310 (313)
T ss_pred CCCceeeEEec-CCCCc-cccccceeEEecC
Confidence 99999997764 55441 1113478888754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=238.36 Aligned_cols=288 Identities=13% Similarity=0.084 Sum_probs=216.4
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc----CCC-CC--ccceeee-ccccCceEEEEeC
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR----GKP-DS--GFALFES-ESLKWPGFVEFDD 195 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~----G~~-~~--~~~lf~~-~~~~~~~~V~Fs~ 195 (474)
+-+|++..|.+|..+|||..+||++. ..| ..++||.... -+. +. -..|++. .|...+.+|.|+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq--~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S- 78 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQ--VLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS- 78 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCc--ccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-
Confidence 44567778999999999999998651 133 3555887521 000 11 0124444 367778889998
Q ss_pred CCCeEEEEecCCCcEEEeecCC-------C-----------eEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~t-------g-----------~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
|||++||+||.|+.|.||+.+. | ++.+++ |+..|.+|++||++.++++ .+-|.+|-||
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS--~s~DnsViiw 156 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS--VSLDNSVIIW 156 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE--ecccceEEEE
Confidence 8999999999999999999872 1 134445 4568999999984444443 3679999999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCC------ceEEEEEcCCCcEEE
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYENQLFL 329 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~------~v~sv~Fspdg~lla 329 (474)
|..+.+++++|++|+..|+.|.|- |-|.++++-+.|++|++|+..+-.+-+...+++. ..+.+.|||||++|+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 999999999999999999999996 5678888888999999999777656555544443 445678999999999
Q ss_pred EEc--CC---cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCccccc
Q 011970 330 TFR--NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPEDQWM 386 (474)
Q Consensus 330 S~s--D~---tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----g~------------~LaS~s~~~~~~~~~ 386 (474)
+.. ++ +|+|-+-. .++-..|-||... +.-+.|+|- .+ .+|+||
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--------- 301 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--------- 301 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEec---------
Confidence 974 43 89998874 6677899999987 577999981 12 456655
Q ss_pred cCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 387 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
.|++|-||+...-+.+.. .|+-+- ..|..+.|||||-.|.-+|.|
T Consensus 302 --qDrSlSVW~T~~~RPl~v--i~~lf~-------------------------------~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 302 --QDRSLSVWNTALPRPLFV--IHNLFN-------------------------------KSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred --CCccEEEEecCCCCchhh--hhhhhc-------------------------------CceeeeeEcCCCCeEEEEecC
Confidence 499999999655555443 344211 178999999999999999999
Q ss_pred CcEEEc
Q 011970 467 GLVHVW 472 (474)
Q Consensus 467 gtVklW 472 (474)
|+|.+-
T Consensus 347 GtV~~i 352 (942)
T KOG0973|consen 347 GTVALI 352 (942)
T ss_pred CeEEEE
Confidence 999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-21 Score=187.95 Aligned_cols=322 Identities=18% Similarity=0.284 Sum_probs=241.9
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccc-eeeEeecCCCceEEEEEE-eeCCCEEEEEEeecCCCcccee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFY-NKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~-~l~~l~g~~~~~i~sv~f-spdg~~Lis~S~~~s~d~s~Lk 159 (474)
...+...|..+.+. +..++.++.|+.+.+|+...+. .+..+.+.+...+..+.+ ++++..++... +..|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d----- 133 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD----- 133 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC-----
Confidence 34577788888888 8889999999999999988777 788888744346788888 88888333322 2335
Q ss_pred eeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-CCcEEEeecCCCeEEEEEcC--CcEEEEEEc
Q 011970 160 CRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KHVQEIKIS 235 (474)
Q Consensus 160 ~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-D~tiKlWdl~tg~~l~tl~~--~~V~~vafS 235 (474)
..+.+|++.. +.... .+. .+...+..++|+ |+++.+++++. |+++++|++.++..+.++.. ..|..++|+
T Consensus 134 -~~~~~~~~~~~~~~~~---~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 134 -GTVKLWDLSTPGKLIR---TLE-GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred -ccEEEEEecCCCeEEE---EEe-cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 6889999776 33311 111 234455589998 79999999986 99999999999888888764 689999999
Q ss_pred CCce-EEEEecCCCCccEEEEecCCCeEEE-EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-EEecccc
Q 011970 236 PGIM-LLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTE 312 (474)
Q Consensus 236 pg~~-la~~s~~s~D~tIkLWdi~tG~~L~-tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-~~~l~~h 312 (474)
|.+. ++++ .+.|++|++||..+++++. .+.+|...+ -..|. +++..+++++.|+++++||+..... +..+.+|
T Consensus 208 ~~~~~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 208 PDGGLLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred CCcceEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 8553 3333 3668999999999999999 688876664 33565 5556777788999999999997765 5555778
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
...+..+.|+|++..+++++ |+++++||.. +....... .|... +..+.|+|++..++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------- 348 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS---------- 348 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------
Confidence 89999999999988888887 9899999985 66665555 77763 678888545356655522
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-EcCCC
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHG 467 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS-gs~Dg 467 (474)
.|+.+++|++.+.........+. .+..+.|++ ....++ ++.++
T Consensus 349 ~d~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 349 DDGTIRLWDLRTGKPLKTLEGHS-----------------------------------NVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred CCCcEEeeecCCCceeEEecCCc-----------------------------------eEEEEEECC-CCCEEEEecCCC
Confidence 38999999998877444433332 378899999 544555 79999
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.+.+|+
T Consensus 393 ~~~~~~ 398 (466)
T COG2319 393 TVRLWD 398 (466)
T ss_pred ceEEEe
Confidence 999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=224.88 Aligned_cols=321 Identities=16% Similarity=0.163 Sum_probs=241.3
Q ss_pred cccEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 88 RTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 88 ~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
+.+|.++.|. .-++|++...|.+.+||++.-+++..+...|.+.|....|-|.-..|.|++. |+ +|+.+.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~---Dn--Slk~~v-- 316 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA---DN--SLKVWV-- 316 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC---CC--ceeEEE--
Confidence 5899999999 5577777777999999999777777776678889999999998888888763 33 455444
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC------------------------------------
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------ 208 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~------------------------------------ 208 (474)
.|-..|-+ .+.-+..+|...|.++.|-..+|..+.|+++|+
T Consensus 317 -fD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 317 -FDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred -eeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 34222221 101122233334444444434444444444444
Q ss_pred -----------------------------cEEEeecCCCeE-EEEEc-------CCcEEEEEEcC-CceEEEEecCCCCc
Q 011970 209 -----------------------------IYKVFDLKNYTM-LYSIS-------DKHVQEIKISP-GIMLLIFNRSSSHV 250 (474)
Q Consensus 209 -----------------------------tiKlWdl~tg~~-l~tl~-------~~~V~~vafSp-g~~la~~s~~s~D~ 250 (474)
..+.|+..+-+. .++|. +..+.+|+.|+ |..-.++.+ .+
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S---~G 470 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS---KG 470 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc---CC
Confidence 555555554333 34443 24688999998 776666543 47
Q ss_pred cEEEEecCCCeEEEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 251 PLKILSIEDGTVLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
+|.++|++.|-..++| ..|...|..|+.- .-|..+++++.||-++.||...+.++..++-. ..+..+..+-...+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhh
Confidence 9999999999999999 4688899888853 34567788899999999999999987765422 24566777888889
Q ss_pred EEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 328 FLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 328 laS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
||.+. |-.|.+.|. +-+.++.|.||++. +++..|||||++|+|+|. |++||+||+.||+|+-
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm-----------D~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM-----------DSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-----------CCcEEEEeccCcceee
Confidence 99988 889999999 48899999999997 799999999999999988 9999999999999998
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC-CcEEEccC
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWSN 474 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D-gtVklWd~ 474 (474)
.|.-.. ..++|.|||+|..|||...| .-|.||.|
T Consensus 613 ~~~vd~-----------------------------------~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 613 GLLVDS-----------------------------------PCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEecCC-----------------------------------cceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 874332 78899999999999999999 56999976
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=217.97 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=210.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC------------Cccceeee--ccccCceEE
Q 011970 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD------------SGFALFES--ESLKWPGFV 191 (474)
Q Consensus 126 g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~------------~~~~lf~~--~~~~~~~~V 191 (474)
+.|.-.|.+|+++||+..+.++|-++ ++-=|++.+|+-+ .+.++-.. .|.+.+..+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g----------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDG----------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCc----------ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 34778899999999999999987433 5556777777742 22222222 356777789
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+.| +||++||+|+.|.-|.|||..+.+.++++.+ +.|.+++|-. ..++. + +.|.+||+|+++.-..+.||-
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys-~---s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS-A---SADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceee-e---ecCCceEEEehhHhHHHHHHh
Confidence 998 7999999999999999999999999988764 6899999994 44433 2 558999999999888889999
Q ss_pred ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
||+..|..++... -++.++. +.|.|++||++ .-+-..++.+|...+-+++|-.+-. |+||| ||.|.||++- -+
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC
Confidence 9999999999753 5788874 69999999999 4455556789999999999987664 67888 9999999984 55
Q ss_pred EEEEec-cCC-----------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC----eEEEEec
Q 011970 345 LVTSFE-DHL-----------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKIN 408 (474)
Q Consensus 345 ll~tl~-gH~-----------~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG----~cl~tl~ 408 (474)
.+.+.. .|. .| |+++|..|..+++||||. +|.||||-+.+| +.+..|.
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ceeEeeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc
Confidence 554333 222 26 689999999999999986 999999999888 2333332
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
-- ..|++|+|+++|+.|+.|-
T Consensus 424 ~~-----------------------------------GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 LV-----------------------------------GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cc-----------------------------------cEEEEEEEccCCCEEEEec
Confidence 11 1899999999999777663
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=224.37 Aligned_cols=232 Identities=16% Similarity=0.155 Sum_probs=191.4
Q ss_pred cCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 186 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
..|.+++|||.+=- ..+++| -.+.|++..+-...+++. .+.|.++.|-.||.|++++ ...+-|||+|+.+...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG--D~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG--DESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc--CCcCcEEEeccccHHH
Confidence 45668999952211 233333 468999988777777776 5789999999766666653 3457899999888778
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEe
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWN 340 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd 340 (474)
|.+|..|++++..+.|.++++..++++++|+.+|+||+.+..-...+.+|++.|++.+|+|... +++||+ ||+||+||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 9999999999999999988777777789999999999999997557899999999999998766 899999 99999999
Q ss_pred CC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCc
Q 011970 341 FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVD 417 (474)
Q Consensus 341 ~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~ 417 (474)
.+ ++.+.+|. |..+ |.+|.|-|.|.+|||++ -..||+||+.+| |.+..+..|..
T Consensus 183 tR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAg------------Gn~vkVWDl~~G~qll~~~~~H~K----- 239 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAG------------GNSVKVWDLTTGGQLLTSMFNHNK----- 239 (487)
T ss_pred eccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcC------------CCeEEEEEecCCceehhhhhcccc-----
Confidence 95 67788885 6554 78999999999999986 478999999866 45555555874
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|.|..|++.|+|||-|+-||++|
T Consensus 240 -----------------------------tVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 240 -----------------------------TVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred -----------------------------eEEEEEeecCCceEeecccccceEEEE
Confidence 899999999999999999999999987
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-25 Score=213.87 Aligned_cols=243 Identities=13% Similarity=0.157 Sum_probs=195.3
Q ss_pred eeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
..|+.|-+.+-.+-++++ --.-|+++-|=|.|+||..||-.|.++. |...|++++|+.|.+.|.|
T Consensus 53 gtfeghkgavw~~~l~~n-------------a~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~llt 117 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKN-------------ATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLT 117 (334)
T ss_pred EeeeccCcceeeeecCch-------------hhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhc
Confidence 445555555544444443 2345788899999999999999999986 7789999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
++ .+ +-+||.++.+-+. +.-+- +|.+.|..|.|.. ..+.+.|++.|+|||+||..+|+..++|.
T Consensus 118 gg----~e------kllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 118 GG----QE------KLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred cc----hH------HHhhhhhccCCCC----CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 54 56 6788888876664 22222 3556677889985 45566677999999999999999999998
Q ss_pred -CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc
Q 011970 226 -DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (474)
Q Consensus 226 -~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~ 304 (474)
...|.++-+|+++.+++.+-+ .+|+.||..+-.+|+.+.-. ..|.+.... |..+.+++|++|.-+.-+|..||+
T Consensus 183 ~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lKs~k~P-~nV~SASL~-P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLKSYKMP-CNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred cCCCCcceeeccCCCEEEEecC---ceeEEeccccccceeeccCc-ccccccccc-CCCceEEecCcceEEEEEeccCCc
Confidence 578999999987766666443 57999999998999888632 345555544 667899999999999999999999
Q ss_pred eEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 305 LMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 305 ~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
-+... .+|+.+|-+|.|+|||.+.|+|| ||||+||... |+
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99884 89999999999999999999999 9999999985 65
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=219.87 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=221.5
Q ss_pred eeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe
Q 011970 121 ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk 199 (474)
++.|.| |.+.|.++|=+|+- .+++|+| .| ..++|||+.+.++..+ |.. |.+.|..+.++ + .
T Consensus 59 v~~L~g-HrdGV~~lakhp~~ls~~aSGs----~D------G~VkiWnlsqR~~~~~---f~A-H~G~V~Gi~v~--~-~ 120 (433)
T KOG0268|consen 59 VGSLDG-HRDGVSCLAKHPNKLSTVASGS----CD------GEVKIWNLSQRECIRT---FKA-HEGLVRGICVT--Q-T 120 (433)
T ss_pred hhhccc-cccccchhhcCcchhhhhhccc----cC------ceEEEEehhhhhhhhe---eec-ccCceeeEEec--c-c
Confidence 445665 77889999999987 5677755 55 6999999988888543 443 45666788886 3 4
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
-..++++|+|||.|-+. |.+++++.++ .+..|.-+ -+..+|+. + ..|.|||.+--.++++|+--.+.+.+|.
T Consensus 121 ~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~~~~~FaTc---G--e~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHRKNSVFATC---G--EQIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred ceEEecCCcceeeeecc-CCcceeeecccccccccccccccccccc---C--ceeeecccccCCccceeecCCCceeEEe
Confidence 67788999999999874 4688888754 56777776 36666665 2 3599999988899999996678899999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCC
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 354 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~ 354 (474)
|+|-....|++++.|+.|-|+|++++..++... -.+....++|+|++-.|++++ |-.+-.+|++ -+.+....||..
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs 273 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS 273 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccce
Confidence 986544455556799999999999999876422 236677899999999999999 9999999995 778999999988
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
. |.+|.|||-|+-++|||. |.||||+.+..|..-.+. |+
T Consensus 274 A-----V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht----------------------- 312 (433)
T KOG0268|consen 274 A-----VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT----------------------- 312 (433)
T ss_pred e-----EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH-----------------------
Confidence 7 799999999999999988 999999998654332221 22
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+-.+.|.+|.||.|.++|+|||.|+.||||.
T Consensus 313 --------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 --------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred --------hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 1123799999999999999999999999995
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=228.80 Aligned_cols=239 Identities=14% Similarity=0.154 Sum_probs=190.9
Q ss_pred eCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC--C-ccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD--S-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 139 pdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~--~-~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
|+|++|.|++ -| .++++|++..-.-- . ...-+++ |..|+..++.. -+|+.|.|+|.|-|||||+.
T Consensus 35 ~~~ryLfTgG----RD------g~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 35 PNGRYLFTGG----RD------GIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILC-GNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCCceEEecC----CC------ceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhh-cCCCceEEecCCceEEEeec
Confidence 5677799965 44 59999998433221 1 1122333 67898888886 69999999999999999998
Q ss_pred CCC--eEEEEEc--CCcEEEEEE-cCCceEEEEecCCCCccEEEEecCCC--eEEEEEe---------ecCcceeEEEEE
Q 011970 216 KNY--TMLYSIS--DKHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY---------HLLHRNKKVDFI 279 (474)
Q Consensus 216 ~tg--~~l~tl~--~~~V~~vaf-Spg~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~---------~h~~~v~~V~F~ 279 (474)
..+ -|+.+|. .+.|.++|+ -++.-++++ ++-|+.|.|||+.+| +++.+|+ |+-..+.+++-.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS--gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS--GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEe--cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 766 4888885 468999999 465555554 477999999999999 5566554 455677888865
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcC
Q 011970 280 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 357 (474)
Q Consensus 280 ~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~ 357 (474)
|.+..+++|+-.+-||+||.++++.+..++||+.-|..+..++||+.++|+| |+||||||+. -.|++|+.-|...
T Consensus 181 -~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-- 257 (735)
T KOG0308|consen 181 -QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-- 257 (735)
T ss_pred -CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--
Confidence 4344555578999999999999999988999999999999999999999998 9999999995 8899999999986
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEec
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 408 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~ 408 (474)
||+++-+|+=+.+.||+. ||.|..=|+.+ .+|....+
T Consensus 258 ---VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 258 ---VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred ---eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEeec
Confidence 899999999999999865 99999989877 45555443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-21 Score=183.98 Aligned_cols=300 Identities=16% Similarity=0.277 Sum_probs=224.3
Q ss_pred EEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC-CCCcccee
Q 011970 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALF 180 (474)
Q Consensus 102 as~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~-~~~~~~lf 180 (474)
.....+..+..+...+ ..+. .|...|.++.|++.+..++.++ .+ ..+.+|+...+. ... .+
T Consensus 43 ~~~~~~~~~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~~~---~~ 104 (466)
T COG2319 43 LALLSDSLVSLPDLSS----LLLR-GHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKLIK---SL 104 (466)
T ss_pred Eeecccccccccccch----heee-eccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCceeEE---EE
Confidence 3344444444444332 2334 3778899999999999888755 44 688899987775 211 12
Q ss_pred eeccccCceEEEE-eCCCCe-EEEEecC-CCcEEEeecCC-CeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEE
Q 011970 181 ESESLKWPGFVEF-DDVNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLK 253 (474)
Q Consensus 181 ~~~~~~~~~~V~F-s~~nGk-~LaS~s~-D~tiKlWdl~t-g~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIk 253 (474)
...+...+..+.+ + +++. +++..+. |+++++||+.+ +.....+. ...|..++|+|++ .+++.+ ..|+.++
T Consensus 105 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~ 181 (466)
T COG2319 105 EGLHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS--SLDGTIK 181 (466)
T ss_pred eccCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecC--CCCCceE
Confidence 2111112334444 5 6777 6666555 99999999987 66665554 5689999999866 444431 1489999
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEE-eccccCCceEEEEEcCCCcEEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~-~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
+|++.++..+.++.+|...+..++|+ |++..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG 259 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe
Confidence 99999999999999999999999998 666645555 899999999999999998 688898775 33899999888888
Q ss_pred c-CCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 332 R-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 332 s-D~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+ |+++++||.. .. ++..+.+|..+ |..+.|.|++..+++++. |+++++||+.++.......
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTLSGHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEEecCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEee
Confidence 8 9999999995 33 36666788665 789999999999999665 7889999999998887776
Q ss_pred --CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEE-cCCCcEEEccC
Q 011970 409 --ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWSN 474 (474)
Q Consensus 409 --gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg-s~DgtVklWd~ 474 (474)
+|.. .|..+.|+|++..++.+ ..|+.+++|+.
T Consensus 324 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 324 LKGHEG----------------------------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred ecccCC----------------------------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 7763 58889995454566666 78899999863
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=212.79 Aligned_cols=267 Identities=13% Similarity=0.147 Sum_probs=213.2
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeE-eec----------------CCCceEEEEEEeeCCCEEE
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNV----------------SPDEVIRSLFYNKNNDSLI 145 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~-l~g----------------~~~~~i~sv~fspdg~~Li 145 (474)
-.|+-+|.+++++ ..+++++|.||+|.-|++.||+-+.. +.- .|...|-+++.||||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3477777777777 67999999999999999999995521 111 3566799999999999999
Q ss_pred EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 146 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 146 s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
|+ ..| +.+.||+..+++..+. |. +|.+.|.+++|= ..-..|-|+|.|++||+|+++.-..+.|+.
T Consensus 219 tg----g~d------~~v~Iw~~~t~ehv~~---~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 219 TG----GRD------RHVQIWDCDTLEHVKV---FK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred ec----CCC------ceEEEecCcccchhhc---cc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 94 466 7889999999997553 44 366777789996 344568899999999999998766666665
Q ss_pred --CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 011970 226 --DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303 (474)
Q Consensus 226 --~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg 303 (474)
+..|.+|....-.+.++. ++.|.|++||+|.. +....|.+|...+.+|+|+. .+.+++|+.||+|-||++...
T Consensus 284 GHqd~v~~IdaL~reR~vtV--GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTV--GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred CCccceeeechhcccceEEe--ccccceeEEEeccc-cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeeccc
Confidence 457988888876677776 35799999999965 55667889988999999984 688999999999999999998
Q ss_pred ceEEec-cc-----------cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C----cEEEEeccCCCCcCCCCeeEEE
Q 011970 304 ELMEVS-RT-----------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 304 ~~~~~l-~~-----------h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G----~ll~tl~gH~~~~~~~~v~sva 365 (474)
+.+-+. .. +..|+++++-.|...++|||| ||.||||-+. | +++..+. -.++ ||+++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~ 432 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLA 432 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEE
Confidence 876432 11 223999999999999999999 9999999995 6 4566555 2334 79999
Q ss_pred ECCCCCEEEEEe
Q 011970 366 ITSDQDLIISYC 377 (474)
Q Consensus 366 fSpDg~~LaS~s 377 (474)
|+++|+.|+.|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=221.31 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=175.0
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--E--EEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M--LYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~--l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
.+-|-+++|+ |+|-.++|||-|.+||+||++.-. + .+.|. .+.|.+++||| |.+|++.+ +...+||.|
T Consensus 167 tk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs---g~aqakl~D 242 (641)
T KOG0772|consen 167 TKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS---GSAQAKLLD 242 (641)
T ss_pred ceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe---cCcceeEEc
Confidence 4556689997 799999999999999999987433 1 12232 47899999997 66666653 245799999
Q ss_pred cCCCeEEEEE-------------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEec-----cccCCceE
Q 011970 257 IEDGTVLKVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVS-----RTEFMTPS 317 (474)
Q Consensus 257 i~tG~~L~tl-------------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l-----~~h~~~v~ 317 (474)
++|..+..| +||...+.+..|.|..-+.+|+++.|+|+||||+.+-+ .++++ .+--..|.
T Consensus 243 -RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 -RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred -cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 477665544 36888889999997666889999999999999998754 33433 23345788
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCCCcEE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~G~ll----~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
+++|+|||+++|++. ||.|++|+..+..+ ..=..|... ..+.+|.||+||++|+|-+. |++
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~t 387 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDT 387 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCc
Confidence 999999999999999 99999999743222 223467653 23789999999999999765 999
Q ss_pred EEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 393 INVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 393 IklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
+||||+.+ .+||.+..|--. +. .-+.+.||||-+.|++|..
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t-~~-------------------------------~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPT-PF-------------------------------PGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeeeeccccccchhhhcCCCc-cC-------------------------------CCCccccCCCceEEEeccc
Confidence 99999965 567777665442 00 3466899999999999963
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-25 Score=236.16 Aligned_cols=219 Identities=13% Similarity=0.223 Sum_probs=191.0
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEE--EcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~t--l~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
..++.++.|+.|..+-||.+..-.++.+ .|...|.+|.|++...|+.++ +.+++||+||++.++.+++|.||...+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag--sasgtiK~wDleeAk~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG--SASGTIKVWDLEEAKIVRTLTGHLLNI 115 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc--ccCCceeeeehhhhhhhhhhhccccCc
Confidence 4578999999999999998866555554 456789999999755555553 457999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 351 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g 351 (474)
.+|+|+ |.+++.+.++-|..++|||.+-.-|..+..+|...|..+.|+|||++++++. |.+|||||.. |+++.+|++
T Consensus 116 ~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 116 TSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 999998 6799998889999999999998889999999999999999999999999999 8999999995 999999999
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|... +.++-|.|..-++++||. |+||++||++|-+.+-..++-..
T Consensus 195 ~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~~------------------- 239 (825)
T KOG0267|consen 195 HEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPETD------------------- 239 (825)
T ss_pred cccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCccC-------------------
Confidence 9976 688999999999999876 99999999987777665544432
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
.|.+++|+|||..+++|-.+.
T Consensus 240 ---------------~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 240 ---------------GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ---------------CceeeeecCCceeeecCchhh
Confidence 899999999999999997654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=207.15 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=214.3
Q ss_pred EEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccce
Q 011970 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~l 179 (474)
.|++.-.++|++. +..+.+.| |.+.||-|+--.--..+.++| .| ++.+||.+.+|+|+..
T Consensus 126 rivssFk~~t~~~------~lvre~~G-HkDGiW~Vaa~~tqpi~gtAS----AD------hTA~iWs~Esg~CL~~--- 185 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEG-HKDGIWHVAADSTQPICGTAS----AD------HTARIWSLESGACLAT--- 185 (481)
T ss_pred hheeeecCCceeE------eehhhhcc-cccceeeehhhcCCcceeecc----cc------cceeEEeeccccceee---
Confidence 3555556666432 34455666 778899999876666777766 55 8999999999999542
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC----CCeEE--EEEcCCcEEEEEEcC-CceEEEEecCCCCccE
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML--YSISDKHVQEIKISP-GIMLLIFNRSSSHVPL 252 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~----tg~~l--~tl~~~~V~~vafSp-g~~la~~s~~s~D~tI 252 (474)
+ .+|.+.+.++.|+ +.|.+++++|.|+|-.||... ..+.. ...+.+ .++.-|+ ......++..++..+|
T Consensus 186 Y-~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE--eE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 186 Y-TGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE--EEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred e-cccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch--hhhhcccccccccccccccCCcee
Confidence 2 2577888899998 789999999999999999732 11100 011100 0111121 1111111111222356
Q ss_pred EEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 253 kLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+ .+|..|.+|...|-..+|. ..+++++++++|.|..|||+++|+.++.|.||.....-+.-.|..+|++|+|
T Consensus 262 R-------vPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS 333 (481)
T KOG0300|consen 262 R-------VPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS 333 (481)
T ss_pred e-------eeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec
Confidence 4 4788999999999998887 4577888899999999999999999999999999999998899999999999
Q ss_pred -CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEec
Q 011970 333 -NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKIN 408 (474)
Q Consensus 333 -D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~ 408 (474)
|-|.+||||+ =.-+..|.||++. |.++.|.-|- .++|||. |.|||+||+.+= ..|+||+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~dd-~vVSgSD-----------DrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTDD-RVVSGSD-----------DRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred cCceeEeccchhhcceeeeecccccc-----eeEEEEecCC-ceeecCC-----------CceEEEeeeccccCcceeee
Confidence 9999999996 3468899999987 6899998764 5788876 999999998663 4578886
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-.+ .+.-|+.+--+++||---.+..|||+|+
T Consensus 397 tdS-----------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 397 TDS-----------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cCC-----------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 654 5666777777777777777777888764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=222.04 Aligned_cols=243 Identities=12% Similarity=0.112 Sum_probs=190.1
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-----------------------C---------
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-----------------------G--------- 171 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-----------------------G--------- 171 (474)
++..|++.||++-||+||++||||+ .| ..++||-|.. +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaG----eD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAG----ED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecC----CC------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 4546899999999999999999965 66 6889998765 0
Q ss_pred ---CC--------------CCccceeee-------ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C
Q 011970 172 ---KP--------------DSGFALFES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 226 (474)
Q Consensus 172 ---~~--------------~~~~~lf~~-------~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~ 226 (474)
+. ......|.. +|..-|..+++| .|+ +|.|+|.|+|||||++..-+||.++. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-cCC-eeEeccccccEEeecCCCcceeeEEecC
Confidence 00 000011211 355556678998 454 89999999999999999999999996 5
Q ss_pred CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc
Q 011970 227 KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (474)
Q Consensus 227 ~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~ 304 (474)
+.|.+|+|+| +..++++ +-|+.||||+|.+-++..-..-+ .-|.+|.|. |+|+..++|..+|.+++|+...-+
T Consensus 410 dfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehhhh-hhheeEEec-cCCceEEEEEeccEEEEEEccCCe
Confidence 7899999998 6666654 67999999999987776544433 678999998 669999999999999999988777
Q ss_pred eEEec---------cccCCceEEEEEcCCC--cEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 305 LMEVS---------RTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 305 ~~~~l---------~~h~~~v~sv~Fspdg--~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
+.... ..|. .|+.|-|.|.. ++|+|+.|..|||.|.+ -+++..|+|+..... =...+|++||++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKH 560 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCE
Confidence 65321 1133 79999987644 48888889999999994 889999998876421 256899999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|+|+|. |.-|.||+.
T Consensus 561 IVs~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 561 IVSASE-----------DSWVYIWKN 575 (712)
T ss_pred EEEeec-----------CceEEEEeC
Confidence 999986 999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=206.43 Aligned_cols=264 Identities=13% Similarity=0.144 Sum_probs=220.1
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
...+++|..|.++-++|.+++|.|.+|.| |.-.|.+|-|+|+.+.++++|+ | ..++||.+........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSa----d------~~i~vws~~~~s~~~~- 298 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASA----D------EIIRVWSVPLSSEPTS- 298 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCC----c------ceEEeeccccccCccc-
Confidence 47899999999999999999999999998 7788999999999999999774 4 5899999866554221
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
+-. |-..|.++.-. |+|.||.++|.|+++-+-|+.+|.++...++ -.+.+.+|+||+.|... +..|+.||
T Consensus 299 -~~~--h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt--gt~d~~vk 372 (506)
T KOG0289|consen 299 -SRP--HEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT--GTPDGVVK 372 (506)
T ss_pred -ccc--ccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec--cCCCceEE
Confidence 111 23345578886 8999999999999999999999998876664 25899999998866554 46689999
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~ 331 (474)
|||+..+..+..|.+|.+.|++|+|++ |++.++ +.+|+.|+|||++.-+..+++. ..+..+.++.|-+-|++|+.+
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 999999999999999999999999986 666665 6789999999999888776643 345589999999999999998
Q ss_pred c-CCcEEEEeC---CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 332 R-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 332 s-D~tIklWd~---~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+ |=+|-+.+- +..++.++.+|.+. .+.|.|..+-++++++|. |...||.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-----st~v~Fg~~aq~l~s~sm-----------d~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGL-----STGVRFGEHAQYLASTSM-----------DAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccc-----cceeeecccceEEeeccc-----------hhheEEee
Confidence 7 767777774 37789999999965 578999999999999886 88888764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=213.38 Aligned_cols=319 Identities=13% Similarity=0.198 Sum_probs=245.7
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeeccc----cceeeEeecCCCceEEEEEEee------CCC-----EEEEEEeecCC
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------NND-----SLITVSVYASD 153 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~~t----g~~l~~l~g~~~~~i~sv~fsp------dg~-----~Lis~S~~~s~ 153 (474)
-++.+|. .+-|.....|..+.+||+.. |++--.| ||..-||+|--=| ... -.+|+| +|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS---sD 401 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCS---SD 401 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEec---CC
Confidence 4566676 89999999999999999764 7777666 6888899986544 211 257776 34
Q ss_pred CccceeeeEEEEeEeccCC---C------------------------CCccceeee------ccccCceEEEEeCCCCeE
Q 011970 154 NFSSLKCRSTKIEYIRRGK---P------------------------DSGFALFES------ESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~---~------------------------~~~~~lf~~------~~~~~~~~V~Fs~~nGk~ 200 (474)
+ |||||++.-+. . +++.++|.. +...-+.+|+.| ||||.
T Consensus 402 ~-------TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqh 473 (1080)
T KOG1408|consen 402 G-------TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQH 473 (1080)
T ss_pred C-------cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcce
Confidence 4 99999985421 1 222234432 112235679998 89999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-C--CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCccee
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 274 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~ 274 (474)
||+|..-|++||+||.+-+.+.++ |+..|.++.|| | +..|+++ ++.|.-|.++|+..- -+++|+.+|...|.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEecccccchhhhhccccccee
Confidence 999999999999999876644444 56789999999 7 4455544 467899999998643 35689999999999
Q ss_pred EEEEEecCC-CeEEEEeCCCcEEEEECC---CCceEEecccc----CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 275 KVDFIEQFN-EKLLVKQENENLQILDVR---NAELMEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 275 ~V~F~~~~~-~~ll~~~~D~tIkIWDv~---tg~~~~~l~~h----~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
+|.|...+. -++++.+.|+.|..=-.+ +|.+. .++| ..+++.++.-|..+++++++ |+.|+|+|++ |+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f--~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF--PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceec--cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 999976432 477788899888643222 13221 1221 13678888899999999999 9999999996 99
Q ss_pred EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCC
Q 011970 345 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 345 ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
.+++|+|..+-. + ..-.|..-|.|-|||+.|. |+|+-+.|.-+|+|+++..||..
T Consensus 630 q~k~FKgs~~~e-G-~lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHsE------------ 684 (1080)
T KOG1408|consen 630 QVKSFKGSRDHE-G-DLIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHSE------------ 684 (1080)
T ss_pred eeeeecccccCC-C-ceEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcch------------
Confidence 999999755421 1 1357889999999999986 99999999999999999999985
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+.|-|++|-+.|+|.+.||-|-||.
T Consensus 685 ----------------------~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 685 ----------------------AVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ----------------------heeeeeecccchhheeecCCceEEEEE
Confidence 899999999999999999999999996
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=211.35 Aligned_cols=298 Identities=16% Similarity=0.213 Sum_probs=220.5
Q ss_pred cccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeec-cEEEEeeCCCeEEeeeccccceeeEeecC
Q 011970 49 RAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAAR-DIVFALAHSGVCAAFSRETNRRICFLNVS 127 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~-~~las~s~dgtiklW~~~tg~~l~~l~g~ 127 (474)
||..++.-.+.|-. -...+++.|..-++|.+-.|. . -.+||||.||.|+|||+.+-+|+.++..
T Consensus 43 RALNAtKleR~fak-PFv~~L~gHrdGV~~lakhp~-------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A- 107 (433)
T KOG0268|consen 43 RALNATKLERVFAK-PFVGSLDGHRDGVSCLAKHPN-------------KLSTVASGSCDGEVKIWNLSQRECIRTFKA- 107 (433)
T ss_pred HHhhhHHHHHHhhc-cchhhccccccccchhhcCcc-------------hhhhhhccccCceEEEEehhhhhhhheeec-
Confidence 34455555555554 223556888888888776665 2 4689999999999999999999999995
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|++.|+.|.+.. ....|++ +| ++++.|-+. |.+..+ ......+--+....+ +...|+|++
T Consensus 108 H~G~V~Gi~v~~--~~~~tvg----dD------KtvK~wk~~-~~p~~t--ilg~s~~~gIdh~~~----~~~FaTcGe- 167 (433)
T KOG0268|consen 108 HEGLVRGICVTQ--TSFFTVG----DD------KTVKQWKID-GPPLHT--ILGKSVYLGIDHHRK----NSVFATCGE- 167 (433)
T ss_pred ccCceeeEEecc--cceEEec----CC------cceeeeecc-CCccee--eeccccccccccccc----cccccccCc-
Confidence 989999999988 4456764 67 788888853 333221 111111111112222 346788875
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
.|-|||..--.++.+++ .+.|.+|+|+|. ..|+++ .+|+.|-|+|+.++++|+...- .-+..+|+|+| ..
T Consensus 168 -~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-ea 241 (433)
T KOG0268|consen 168 -QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EA 241 (433)
T ss_pred -eeeecccccCCccceeecCCCceeEEecCCCcchheeee---ccCCceEEEecccCCccceeee-eccccceecCc-cc
Confidence 48999987667777766 578999999994 444443 5689999999999999987652 24668899986 66
Q ss_pred CeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 284 EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
-.+.++.+|.++..+|++.- +.+.+..+|...|..|.|||-|+-|+||| |+||+|+.++ |.---.. |+-. ...
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkR--Mq~ 317 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKR--MQH 317 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhh--hhe
Confidence 77888899999999999984 46788899999999999999999999999 9999999995 5422111 2111 112
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
|-+|.+|-|.++|+|||. |+.||||-..--+
T Consensus 318 V~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~Ase 348 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSD-----------DGNVRLWKAKASE 348 (433)
T ss_pred eeEEEEeccccEEEecCC-----------Ccceeeeecchhh
Confidence 789999999999999987 9999999854333
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=198.55 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=178.5
Q ss_pred CCCeEEEEecCCCcEEEeecCC-C--eEEEEEcC--CcEEEEEEc-C--CceEEEEecCCCCccEEEEecCCCeEE--EE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSISD--KHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTVL--KV 265 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~t-g--~~l~tl~~--~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~tG~~L--~t 265 (474)
--|+.||+++.|++|||+.+.+ + +++.+|.+ ..||.|+|- | |..||++ +.|+.|-||.-++|+-- ..
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc---sYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC---SYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe---ecCceEEEEecCCCchhhhhh
Confidence 3599999999999999999874 3 46677754 689999999 7 7777765 77999999998888543 34
Q ss_pred EeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-c-e-EEeccccCCceEEEEEcCC---C-----------cE
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-E-L-MEVSRTEFMTPSAFIFLYE---N-----------QL 327 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg-~-~-~~~l~~h~~~v~sv~Fspd---g-----------~l 327 (474)
+..|...|.+|+|-|..=+.+|+ ++.||+|.|.+.++. . + .+....|...|.++.+.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 55788999999998654455555 689999999998864 2 2 2346779999999999886 5 67
Q ss_pred EEEEc-CCcEEEEeCC-C--cEEEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 328 FLTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G--~ll~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+|++ |.+||||+++ + ++-++|++|.+| |+.||+.|. ..+|||+|. ||++-||-..
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt~~ 241 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWTKD 241 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEEec
Confidence 99998 9999999996 5 455689999999 678999996 478999876 9999999753
Q ss_pred C--CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 400 T--GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 400 t--G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. ++--.|+. |. +|. .|+.+.||+-|+.|+-++.|+.|.||.
T Consensus 242 ~e~e~wk~tll-~~-f~~-------------------------------~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 242 EEYEPWKKTLL-EE-FPD-------------------------------VVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CccCccccccc-cc-CCc-------------------------------ceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1 11111221 11 222 799999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=214.75 Aligned_cols=326 Identities=13% Similarity=0.112 Sum_probs=229.5
Q ss_pred ccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccc---------------------ee-
Q 011970 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNR---------------------RI- 121 (474)
Q Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~---------------------~l- 121 (474)
....+.++|..+++...|..+ .. ..-+|||+|+|.+||||.+.-+- ++
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~--~~--------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARL--GG--------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred eEEEEeeccchhhhhhhhhcc--CC--------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 444566777777776665555 11 13579999999999999976433 22
Q ss_pred --e------EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-----------ccCCCCCccceeee
Q 011970 122 --C------FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-----------RRGKPDSGFALFES 182 (474)
Q Consensus 122 --~------~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-----------~~G~~~~~~~lf~~ 182 (474)
. +|.-+|+++|+||-++|.+..|.|+|+| .+.-||-. +-|+.- .
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd~~tGiWv~~vRlGe~g-------g 314 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPDENTGIWVDVVRLGEVG-------G 314 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecCCccceEEEEEEeeccc-------c
Confidence 2 3443499999999999999888888754 35555542 233320 0
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEE--EEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTML--YSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l--~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
...+ -+..-|+ ||+..+.+-+.-|-.++|--++ ..+. ..++ -+.|.+|+++| |..|++. |-|+|-||+-
T Consensus 315 ~a~G-F~g~lw~-~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa 389 (764)
T KOG1063|consen 315 SAGG-FWGGLWS-PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFA 389 (764)
T ss_pred cccc-eeeEEEc-CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeec
Confidence 0111 2246787 7999999999999999998332 2222 2333 46899999998 7777765 6689999975
Q ss_pred cCCCeE--EEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC------------------------------
Q 011970 257 IEDGTV--LKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR------------------------------ 301 (474)
Q Consensus 257 i~tG~~--L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~------------------------------ 301 (474)
-- |.. -+.+ +-|.+-..+++|.+ .+-+++++.+.+-+|+++.-
T Consensus 390 ~w-g~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 390 RW-GRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred cc-ccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 32 221 1222 24667778888874 23444444444444544321
Q ss_pred -------------CCc----eE-----------------------------EeccccCCceEEEEEcCCCcEEEEEc-C-
Q 011970 302 -------------NAE----LM-----------------------------EVSRTEFMTPSAFIFLYENQLFLTFR-N- 333 (474)
Q Consensus 302 -------------tg~----~~-----------------------------~~l~~h~~~v~sv~Fspdg~llaS~s-D- 333 (474)
+|. |. +.+-||...|++++.+|+|+++||++ -
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~ 547 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSS 547 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhC
Confidence 111 01 12467889999999999999999985 2
Q ss_pred ----CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----E
Q 011970 334 ----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----L 404 (474)
Q Consensus 334 ----~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c----l 404 (474)
--|+||+.. -..++.|++|+.. |..++|||||++|+|.|. |.++.||+.+.+.. .
T Consensus 548 ~~ehAvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 548 LKEHAVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred CccceEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhh
Confidence 268999995 6778889999987 789999999999999987 99999999754332 3
Q ss_pred EEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 405 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 405 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.++.|+. -||+..|+||++.+||+|+|++|++|.
T Consensus 612 a~~k~HtR----------------------------------IIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 612 ACLKAHTR----------------------------------IIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccccccce----------------------------------EEEEcccCcccceeEEecCCceEEEEe
Confidence 34677774 899999999999999999999999995
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=197.99 Aligned_cols=299 Identities=13% Similarity=0.152 Sum_probs=209.7
Q ss_pred eEEeeecccccee-----eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeec
Q 011970 109 VCAAFSRETNRRI-----CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (474)
Q Consensus 109 tiklW~~~tg~~l-----~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~ 183 (474)
..+-|+.++.++. .+|.| |...|..++||.||++|||++ +| ++|+||++++=..-.-.-+-..-
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKg-H~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nv 130 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKG-HKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNV 130 (420)
T ss_pred chhhhcccCCCcccchhhhhhhc-cCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhccc
Confidence 3556666655543 36776 778899999999999999987 56 89999998641110000011111
Q ss_pred cccCceEEEEeCCCCe-EEEEecCCCcEEEeecC---CCeEEE-EEc-C---------CcEEEEEEcCCceEEEEecCCC
Q 011970 184 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLY-SIS-D---------KHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~---tg~~l~-tl~-~---------~~V~~vafSpg~~la~~s~~s~ 248 (474)
...+|..|+|+ ||-+ ++++.....++.++-+. .|..-+ ..+ + -.|.++-+-.+..++.+ ++.
T Consensus 131 e~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims--as~ 207 (420)
T KOG2096|consen 131 EYDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS--ASL 207 (420)
T ss_pred cCCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE--ecC
Confidence 25688899998 5765 56677777788888753 333211 111 1 23555556554444433 366
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEE-----eccccCCceEEEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELME-----VSRTEFMTPSAFI 320 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~-----~l~~h~~~v~sv~ 320 (474)
|.+|-||++. |+.|.+....+..+.-.+.+ |+|..+++++.---|++|.+- .|+..+ .|.||...|.+++
T Consensus 208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred CCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 8999999998 99999998665555556655 777777778898999999864 344332 3799999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCC-----Cc---EEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~-----G~---ll~tl~g--H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|||+.+.++|.| ||++||||.+ |+ +|+++.. |..- ...+ -++.||.|+.||-..
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag--~~p~-RL~lsP~g~~lA~s~------------ 350 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG--SEPV-RLELSPSGDSLAVSF------------ 350 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC--CCce-EEEeCCCCcEEEeec------------
Confidence 999999999999 9999999964 22 3443311 1110 0112 689999999999765
Q ss_pred CCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 390 AGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
..++++...++|+-.-+++. |.. .|.+++|+|||++|||.+ |.-
T Consensus 351 gs~l~~~~se~g~~~~~~e~~h~~----------------------------------~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 351 GSDLKVFASEDGKDYPELEDIHST----------------------------------TISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred CCceEEEEcccCccchhHHHhhcC----------------------------------ceeeEEecCCCcEEeeec-cee
Confidence 46799999999987777643 553 899999999999999998 555
Q ss_pred EEEcc
Q 011970 469 VHVWS 473 (474)
Q Consensus 469 VklWd 473 (474)
|+|-.
T Consensus 396 vrv~~ 400 (420)
T KOG2096|consen 396 VRVIR 400 (420)
T ss_pred eeeec
Confidence 66543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=220.64 Aligned_cols=282 Identities=13% Similarity=0.134 Sum_probs=219.4
Q ss_pred ccccccc-EEEEEee--ccEEEEee--CCCeEEeeeccc------------cceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 84 FLMKRTK-VIEIVAA--RDIVFALA--HSGVCAAFSRET------------NRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 84 ~~~~~~~-V~~i~~s--~~~las~s--~dgtiklW~~~t------------g~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
.+.|..+ |-+|... +..+|+|. .||.+++|+.+. .+.+|++.- |...|.+|.|||||++||+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEee
Confidence 3445444 4455555 88999999 999999998762 456888885 8899999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-----------------ccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-----------------ESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-----------------~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
|+|| +.+-||.-.. .. ....|.. +|-.-|-.|+++ ||+.+|||+|.|++
T Consensus 87 ----GSDD------~~v~iW~~~~-~~--~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 87 ----GSDD------RLVMIWERAE-IG--SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNS 152 (942)
T ss_pred ----ccCc------ceEEEeeecc-cC--CcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccce
Confidence 5589 8999998552 11 1112211 233335568998 79999999999999
Q ss_pred EEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec------CcceeEEEEEe
Q 011970 210 YKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIE 280 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~~~v~~V~F~~ 280 (474)
|-|||..+.+++.++.+ ..|-.|.|-| |.++|+- ++|++||+|++.+-.+.++...+ ......+.++
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq---sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS- 228 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ---SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS- 228 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCccCeeeee---cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-
Confidence 99999999999998865 5799999999 7777765 66999999998887788887754 2345788887
Q ss_pred cCCCeEEEE-e---CCCcEEEEECCCCceEEeccccCCceEEEEEcC-----CCc------------EEEEEc-CCcEEE
Q 011970 281 QFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-----ENQ------------LFLTFR-NRTVAV 338 (474)
Q Consensus 281 ~~~~~ll~~-~---~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-----dg~------------llaS~s-D~tIkl 338 (474)
|||++|++. + .-.++.|.+-.+-++-..|.||...+..+.|+| ..+ .+|+|+ |++|-|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 788888885 3 457899999888888888999999999999987 111 678889 999999
Q ss_pred EeC-CCcEE---EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 339 WNF-RGELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 339 Wd~-~G~ll---~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
|+. .-+.+ +.+-++ .|..+.+||||-.|..+|. ||+|.+-.++..+
T Consensus 309 W~T~~~RPl~vi~~lf~~-------SI~DmsWspdG~~LfacS~-----------DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNK-------SIVDMSWSPDGFSLFACSL-----------DGTVALIHFEEKE 358 (942)
T ss_pred EecCCCCchhhhhhhhcC-------ceeeeeEcCCCCeEEEEec-----------CCeEEEEEcchHH
Confidence 998 33432 233333 2789999999999998876 9999999987644
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=208.72 Aligned_cols=325 Identities=14% Similarity=0.162 Sum_probs=230.3
Q ss_pred cccEEEEEeeccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceE-EEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVI-RSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 88 ~~~V~~i~~s~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i-~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
...+..|..--...++.+-|+++.+|+.+.-+ |+..++....+.| -++++.||.+..+.+ -|+.+ ..+.
T Consensus 101 ~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla--~Ggs~------~~v~ 172 (764)
T KOG1063|consen 101 CKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA--CGGSK------FVVD 172 (764)
T ss_pred ceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE--ecCcc------eEEE
Confidence 34445555544555556889999999987666 5666666444433 377888876665553 25566 5555
Q ss_pred EeEeccCCCCCccc-eeee-ccccCceEEEEeCCCC--eEEEEecCCCcEEEeecCCCe---------------------
Q 011970 165 IEYIRRGKPDSGFA-LFES-ESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYT--------------------- 219 (474)
Q Consensus 165 iw~i~~G~~~~~~~-lf~~-~~~~~~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~--------------------- 219 (474)
|..-..+++ . +-+. +|..||.+++|..+-| -+|||+|||..||||.+.-+.
T Consensus 173 ~~s~~~d~f----~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 173 LYSSSADSF----ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred EeccCCcce----eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 544333332 2 1222 4788999999986544 489999999999999864222
Q ss_pred EE----EE--------EcCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecC--CCeEEEEEe-----ecCcceeEEEEE
Q 011970 220 ML----YS--------ISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE--DGTVLKVFY-----HLLHRNKKVDFI 279 (474)
Q Consensus 220 ~l----~t--------l~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~--tG~~L~tl~-----~h~~~v~~V~F~ 279 (474)
++ |. .|++||.++-++|.+ +|+++ |.|+++-+|.-. ||--+-+.+ |....-+..-|+
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA---SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA---SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhheec---ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 22 11 135799999999844 77775 668999999654 343333333 223345888887
Q ss_pred ecCCCeEEEEeCCCcEEEEE-CCCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-------------
Q 011970 280 EQFNEKLLVKQENENLQILD-VRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------------- 342 (474)
Q Consensus 280 ~~~~~~ll~~~~D~tIkIWD-v~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~------------- 342 (474)
+ ++..+++-+.-|-.++|- ....++.+ ...||++.|..+++.|.|.+|+|.+ |+|-||.-.-
T Consensus 326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 4 455666678999999998 33444443 4689999999999999999999999 9999984311
Q ss_pred --C---cEE-----------------------------------------------------------------------
Q 011970 343 --G---ELV----------------------------------------------------------------------- 346 (474)
Q Consensus 343 --G---~ll----------------------------------------------------------------------- 346 (474)
| +|+
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 1 011
Q ss_pred ----------------------------------EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 347 ----------------------------------TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 347 ----------------------------------~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
+.|-||..- |.+++++|+|++|||+|+|..- +---
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE-----v~~l~~s~~gnliASaCKS~~~------ehAv 553 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE-----VYALAISPTGNLIASACKSSLK------EHAV 553 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee-----EEEEEecCCCCEEeehhhhCCc------cceE
Confidence 112244433 7899999999999999984221 2356
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 393 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 393 IklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
|+||+..+-+.++.|++|+. .|+.++|||||++|+|.|+|.|+.||
T Consensus 554 I~lw~t~~W~~~~~L~~HsL----------------------------------TVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSL----------------------------------TVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred EEEEeccchhhhheecccce----------------------------------EEEEEEECCCCcEEEEeecCceEEee
Confidence 99999988888889999996 89999999999999999999999999
Q ss_pred c
Q 011970 473 S 473 (474)
Q Consensus 473 d 473 (474)
.
T Consensus 600 ~ 600 (764)
T KOG1063|consen 600 E 600 (764)
T ss_pred e
Confidence 5
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=209.81 Aligned_cols=305 Identities=13% Similarity=0.148 Sum_probs=238.3
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
|+-|++.|-++|||+.||+.++++++ +...|.++-=+|==+.+|. |..+ .+|-|.+++.++.+- -|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVai----G~~~------G~ViifNlK~dkil~---sF 240 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAI----GLEN------GTVIIFNLKFDKILM---SF 240 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEE----eccC------ceEEEEEcccCcEEE---EE
Confidence 56789999999999999999999997 5588999999997776665 5566 799999999999743 24
Q ss_pred eeccccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEE-
Q 011970 181 ESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKIL- 255 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLW- 255 (474)
.+. .+.|.+++|. .||. +||+|..-|.+-+|||+.-+++..+. ...|....|-||.-++.++ +.|..+|+|
T Consensus 241 k~d-~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta--~~DnSlk~~v 316 (910)
T KOG1539|consen 241 KQD-WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA--GADNSLKVWV 316 (910)
T ss_pred Ecc-ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec--cCCCceeEEE
Confidence 442 5667799998 5786 57777788999999998877765554 3568888888877666653 557888887
Q ss_pred -ecCCC--eEEEEEeecCcceeEEEEEecCC-------------------------------------------------
Q 011970 256 -SIEDG--TVLKVFYHLLHRNKKVDFIEQFN------------------------------------------------- 283 (474)
Q Consensus 256 -di~tG--~~L~tl~~h~~~v~~V~F~~~~~------------------------------------------------- 283 (474)
|..+| ..|+.=.||..+-..+.|....+
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 53344 33443334444333333321100
Q ss_pred ----------------------------------------------------------------CeEEEEeCCCcEEEEE
Q 011970 284 ----------------------------------------------------------------EKLLVKQENENLQILD 299 (474)
Q Consensus 284 ----------------------------------------------------------------~~ll~~~~D~tIkIWD 299 (474)
...++|...|+|-++|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 0233455789999999
Q ss_pred CCCCceEEec---cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 300 VRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 300 v~tg~~~~~l---~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
+++|-....+ ..|.+.|..++.-.-+++++|++ ||-++.||+. ..++.++.--.. +..+..+....++|
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~------~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS------ITGIVYHRVSDLLA 550 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC------cceeeeeehhhhhh
Confidence 9999988877 47999999999999999999998 9999999996 777777752211 34566677888888
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
.++. |-.|++.|+.|.+.++.|.||++ .|+++.||
T Consensus 551 ~~~d-----------df~I~vvD~~t~kvvR~f~gh~n----------------------------------ritd~~FS 585 (910)
T KOG1539|consen 551 IALD-----------DFSIRVVDVVTRKVVREFWGHGN----------------------------------RITDMTFS 585 (910)
T ss_pred hhcC-----------ceeEEEEEchhhhhhHHhhcccc----------------------------------ceeeeEeC
Confidence 8887 99999999999999999999997 89999999
Q ss_pred CCCCEEEEEcCCCcEEEccC
Q 011970 455 EERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd~ 474 (474)
|||+.|+|++.|++||+||.
T Consensus 586 ~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred CCCcEEEEeecCCcEEEEec
Confidence 99999999999999999995
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=203.04 Aligned_cols=233 Identities=14% Similarity=0.185 Sum_probs=197.7
Q ss_pred ceEEEEeCCCC--eEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 188 ~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
++..+|+ +.+ ..+.+|+.|.++-++|...++.+.++.++ .|.++.|+|+...+.. ++.|..|++|+..+..+-
T Consensus 220 pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~--aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT--ASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee--cCCcceEEeeccccccCc
Confidence 4456665 444 57889999999999999999999888764 6999999997666555 466899999999988888
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc--cCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~--h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.....|...|..+... |.|+++++++.|++.-.-|+++|.++.+-.. ....+.+.+|.|||-+|.++. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 8888888999999875 7899999999999999999999998866443 334688999999999999999 99999999
Q ss_pred C-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 341 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 341 ~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
+ ++.-+..|.||.+. |.+|+|+.+|-+||+++. |+.|+|||+.--+..+++.-.+.
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 9 48899999999998 799999999999999987 99999999977676677654432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|.++.|++-|++|+.++.|=+|++.+
T Consensus 433 --------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 --------------------------KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred --------------------------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 1588999999999999999888777643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=180.16 Aligned_cols=239 Identities=13% Similarity=0.171 Sum_probs=192.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCC------Ce----------EEEEEc-CCcEEEEEEcC-CceEEEEecC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YT----------MLYSIS-DKHVQEIKISP-GIMLLIFNRS 246 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t------g~----------~l~tl~-~~~V~~vafSp-g~~la~~s~~ 246 (474)
...+.+|+|. |+|++-|-||..+|.||--... +. |..+-+ ...|.++++|| |..+|++
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg--- 107 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG--- 107 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec---
Confidence 3457799997 8999999999999999974321 11 111111 35799999998 5555553
Q ss_pred CCCccEEEEecCCCeEE-----EEEeecCcceeEEEEEe--cCCCeEEEE-e-CCCcEEEEECCCCceEEeccccCCceE
Q 011970 247 SSHVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFIE--QFNEKLLVK-Q-ENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L-----~tl~~h~~~v~~V~F~~--~~~~~ll~~-~-~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
+.|++||+.-...-+|- ..|+-|.+.++.++|.+ ..++.||++ + .|..|.|=|..+|+.++-+.||++.+-
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 77999999866554443 35777889999999964 234666664 3 789999999999999999999999998
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g--H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
++ ++-+|-.|+|+| |+||+.||++ ..|+.++.. |..-.....|.+|+..|.|++||||-. |.+-
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc 255 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSC 255 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCce
Confidence 87 888999999999 9999999998 889987753 222111234789999999999999865 8889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+||.-|+.++.+..|+. .|.+|-|||--.+|.++|.|..|||=|
T Consensus 256 ~lydirg~r~iq~f~phsa----------------------------------dir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSA----------------------------------DIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred EEEEeeCCceeeeeCCCcc----------------------------------ceeEEEeCCCceEEEEecccceEEEee
Confidence 9999999999999999986 899999999999999999999999865
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=200.33 Aligned_cols=277 Identities=18% Similarity=0.194 Sum_probs=215.6
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
+++ +....|.|+|||.+...||.+ -.+ ..+.||++..+=+.. +.++...-.++.+++|+ +|..|-
T Consensus 20 f~d-~~Ps~I~slA~s~kS~~lAvs----Rt~------g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~--e~~RLF 84 (691)
T KOG2048|consen 20 FVD-YKPSEIVSLAYSHKSNQLAVS----RTD------GNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWA--EGGRLF 84 (691)
T ss_pred EEe-eeccceEEEEEeccCCceeee----ccC------CcEEEEccCCCceee--EEEecCCCCceeeEEEc--cCCeEE
Confidence 444 344679999999999888863 234 589999988765532 22332234678899997 455788
Q ss_pred EecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE--EeecCcceeEEE
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV--FYHLLHRNKKVD 277 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t--l~~h~~~v~~V~ 277 (474)
|.+.+|+|--||+.+++.++.+. +..||+++++| +..++++ .+|+-+.+.++..+++... |.-..+++.+|+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig---cddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG---CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee---cCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 99999999999999999999886 57899999998 6666665 4577889999988877543 333348999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEE-----e---ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELME-----V---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 347 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-----~---l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~ 347 (474)
|. +++-++++|+.|+-|++||+.++..+. + .++..--||+|.|..|+++ +||. -|+|+.||.. |.+++
T Consensus 162 w~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI-~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 162 WN-PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI-ASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred ec-CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcE-EEecCCceEEEEcccCcchhh
Confidence 97 667789999999999999999998665 2 2335567999999988865 5664 9999999995 99999
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EE--EecCCCCCCCCccccCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LA--KINATNCSPKVDDELGSS 423 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~--tl~gH~~~~~~~~~~~~~ 423 (474)
++..|..- |.+++..+++++++|++. |+.|-.....+++- +. ....|..
T Consensus 240 S~~~h~ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~h----------- 292 (691)
T KOG2048|consen 240 SHSCHDAD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHAH----------- 292 (691)
T ss_pred hhhhhhcc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCcc-----------
Confidence 99999875 799999999999999876 88877776555433 11 1123432
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
+|.+++..++ .|+||+.|.++.+
T Consensus 293 -----------------------dvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 293 -----------------------DVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred -----------------------cceeeeeecc--eEEecceeeEEEE
Confidence 8999999998 8999999998754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=198.56 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=186.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--------cCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--------RGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--------~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.|++-|..+-|-|++..||.+ ++.. ..+.|||.. .|++.....|..++.-++ .++|++..-
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt---~t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~--glsWn~~~~ 190 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVAT---KTSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY--GLSWNRQQE 190 (422)
T ss_pred cCCccchhhhhCCCCCcEEEe---cCCC------CCEEEEEeccCCCcccccccCCCceEEEeeccccc--ccccccccc
Confidence 478889999999999988753 3333 678889872 233333335666632232 466664444
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
=.|++++.|++|.+||++.+..- +..+ .....|.+|...|..|+|
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~---------------------------~~~~--------~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKE---------------------------DKVV--------DPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred eeEeeccCCCcEEEEeccccccC---------------------------Cccc--------cceEEeecCCcceehhhc
Confidence 47888899999999997643210 0000 233567789999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECC--CCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC--CcEEEEeccC
Q 011970 279 IEQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDH 352 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~--tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~--G~ll~tl~gH 352 (474)
.+.+...+.+.++|+.+.|||++ +.++...-.+|...+.+++|+| ++.+|||+| |+||+|||++ -+++.+|++|
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH 315 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence 96555555556899999999999 5666777889999999999996 677889999 9999999995 7799999999
Q ss_pred CCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCC-CeE-------------EEEecCCCCCCCCc
Q 011970 353 LLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILT-GKC-------------LAKINATNCSPKVD 417 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~-LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~c-------------l~tl~gH~~~~~~~ 417 (474)
..- |..|.|||+-.. |||++ .|+.+.+||+.. |+- +-+=-||..
T Consensus 316 ~de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~----- 374 (422)
T KOG0264|consen 316 EDE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA----- 374 (422)
T ss_pred Ccc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccChhhhccCCcceeEEecCccc-----
Confidence 986 789999998655 55543 499999999843 111 122234443
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~DgtVklWd~ 474 (474)
.|....|+|+... |+|.++|+.++||++
T Consensus 375 -----------------------------kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 375 -----------------------------KVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -----------------------------ccccccCCCCCCeEEEEecCCceEEEeec
Confidence 7888999998865 889999999999974
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-22 Score=204.76 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=225.9
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee---ccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~~ 196 (474)
.+.+|+ |.|+|-.+++|...+.+-|++ . +.|+||||..-. ++ ++.-+. ..-.+++++... |
T Consensus 412 q~~tL~--HGEvVcAvtIS~~trhVyTgG----k-------gcVKVWdis~pg-~k-~PvsqLdcl~rdnyiRSckL~-p 475 (705)
T KOG0639|consen 412 QINTLA--HGEVVCAVTISNPTRHVYTGG----K-------GCVKVWDISQPG-NK-SPVSQLDCLNRDNYIRSCKLL-P 475 (705)
T ss_pred hhhhhc--cCcEEEEEEecCCcceeEecC----C-------CeEEEeeccCCC-CC-CccccccccCcccceeeeEec-C
Confidence 466776 789999999999999888743 3 689999983221 11 121111 123567788887 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEE--EEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~--tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
||+.|..|+.-.|+-||||...++.. .+. .-..+++++||+..++-+ +-.|+.|.|||+++..+.+.|.||.+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs--ccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS--CCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee--eccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999999999999998766432 222 346788999998877654 345899999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-CCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEec
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h-~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~ 350 (474)
+.+++.+ .+|.+|-+|+-|++||.||++++..++. +. ...|.++-..|.+..+|.|- ++.|.|-..+|.....|.
T Consensus 554 ascIdis-~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh 630 (705)
T KOG0639|consen 554 ASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH 630 (705)
T ss_pred ceeEEec-CCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeec
Confidence 9999976 7899999999999999999999875533 21 24677777889999999998 999988888877766676
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
-|..- |.++-|.+-|++.+|.++ |+-++.|...-|.-+-..+..+
T Consensus 631 lheSc-----VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S------------------- 675 (705)
T KOG0639|consen 631 LHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS------------------- 675 (705)
T ss_pred ccccE-----EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC-------------------
Confidence 66653 689999999999999887 9999999988887776665544
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.++..|-|.++|+|||.|+...|+.
T Consensus 676 ----------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 ----------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ----------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 799999999999999999998777664
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-23 Score=222.02 Aligned_cols=220 Identities=12% Similarity=0.216 Sum_probs=180.7
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
+..++....+...|+||.+.- ..|...|..+++-..+..+.. ++.|..+-||.+..-.++..|.+|...|.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~----~~hsaav~~lk~~~s~r~~~~--Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF----VAHSAAVGCLKIRKSSRSLVT--GGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchhh----hhhhhhhceeeeeccceeecc--CCCceeeccccccCCchhheeeccCCcceeee
Confidence 344555556667888986432 123334444444322222322 25577888999977777889999999999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCC
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 355 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~ 355 (474)
|.. +...|++|+.||+||+||++.++.+++|.||...+.+|.|+|-+.++|+++ |.-+++||.+ -.|..++.+|...
T Consensus 78 f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 78 FDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred cCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 974 234444467999999999999999999999999999999999999999999 9999999997 7799999998754
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
|+.+.|+|||++++++.. |++|+|||...|+.+.+|++|..
T Consensus 157 -----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~----------------------- 197 (825)
T KOG0267|consen 157 -----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG----------------------- 197 (825)
T ss_pred -----eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-----------------------
Confidence 789999999999999865 99999999999999999999996
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.+|.|+|---.|++||.|+||++||.
T Consensus 198 -----------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -----------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------cccccccCchhhhhccCCCCceeeeecc
Confidence 7889999999999999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=193.09 Aligned_cols=277 Identities=12% Similarity=0.154 Sum_probs=223.2
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeecc---------------c--c-ceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRE---------------T--N-RRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~---------------t--g-~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
|.++++.-+|+ |..+|+||-|-.|||.|++ + + -.|+||-- |.+.|..|.|.|-.+.|||
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhheEEe
Confidence 88899999999 9999999999999999987 1 1 35889986 7788999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~- 225 (474)
+| .| .++++.|+..--.-.+++.|+. ...+.+++|. |.|.+|+-|.+--+++|+|++|++|..+-.
T Consensus 190 ~s----rD------~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 190 GS----RD------NTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred cc----CC------CeEEEEecccHHHHHHHHHhhc--cceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 65 55 6999999854444455667775 3345699998 799999999999999999999999976542
Q ss_pred ----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEE
Q 011970 226 ----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298 (474)
Q Consensus 226 ----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW 298 (474)
.+.|..|.+|+ |.+.+++ |-|+-|||||=-.++|+.+|. |....|-+..|. -++.++|+++.|.++|||
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ccccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeee
Confidence 35799999997 6666665 558999999999999999997 334577888886 567889999999999999
Q ss_pred ECCCCceEEecccc-----CCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCC
Q 011970 299 DVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 299 Dv~tg~~~~~l~~h-----~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpD 369 (474)
.+.+|.++++..|- +..-+..+|...-.+++.-. .+.+--||.+ +..++-+. ||.+. ++-|.-||.
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~ 407 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPV 407 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCC
Confidence 99999999875432 22334456777777777654 5677789995 66554333 88876 688999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+--++++|. |-.+|.|-
T Consensus 408 ~p~FmTcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSD-----------DFRARFWY 424 (430)
T ss_pred CCceeeecc-----------cceeeeee
Confidence 999999887 99999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=206.85 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=200.3
Q ss_pred ccEEEEeeCCCeEEeeecccc---ceee----------------------------------EeecCCCceEEEEEEeeC
Q 011970 98 RDIVFALAHSGVCAAFSRETN---RRIC----------------------------------FLNVSPDEVIRSLFYNKN 140 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg---~~l~----------------------------------~l~g~~~~~i~sv~fspd 140 (474)
..-+.+.|.|+|||||+++-+ +.++ .+-+ ....||+|+.|||
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPD 470 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCC
Confidence 456889999999999998841 2100 0111 1235999999999
Q ss_pred CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC--CeEEEEecCCCcEEEeecC-C
Q 011970 141 NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLK-N 217 (474)
Q Consensus 141 g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~-t 217 (474)
||.||++ | +|.+++|.++..=.. .+|-..|-.-|.+++||-|+ .|+|||+|.|+-|.|+|++ +
T Consensus 471 gqhLAsG-----D-----r~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 471 GQHLASG-----D-----RGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceeccc-----C-----ccCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 9999973 2 357889999865554 22333344446689998664 5899999999999999996 7
Q ss_pred CeEEEEEcC--CcEEEEEEc-CC-ceEEEEecCCCCccEEEEecC---CCeEEEEEeecC-----cceeEEEEEecCCCe
Q 011970 218 YTMLYSISD--KHVQEIKIS-PG-IMLLIFNRSSSHVPLKILSIE---DGTVLKVFYHLL-----HRNKKVDFIEQFNEK 285 (474)
Q Consensus 218 g~~l~tl~~--~~V~~vafS-pg-~~la~~s~~s~D~tIkLWdi~---tG~~L~tl~~h~-----~~v~~V~F~~~~~~~ 285 (474)
|.++.|+.+ ..|.+|+|- .| +.-.++ ++.|+.|..=.-+ +|.. |.-|. .....++. +|.-+.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~Mis--cGADksimFr~~qk~~~g~~---f~r~t~t~~ktTlYDm~V-dp~~k~ 610 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMIS--CGADKSIMFRVNQKASSGRL---FPRHTQTLSKTTLYDMAV-DPTSKL 610 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEe--ccCchhhheehhccccCcee---ccccccccccceEEEeee-CCCcce
Confidence 889999975 479999999 33 233333 3557766432221 1322 22221 23456664 355677
Q ss_pred EEEEeCCCcEEEEECCCCceEEeccc---cCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCC
Q 011970 286 LLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 286 ll~~~~D~tIkIWDv~tg~~~~~l~~---h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~ 360 (474)
+++++.|.+|+|+|+++|+..++++| |.+.+-.+..-|-|.++||+. |+|+.+.|+ .|||+.++.||...
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~----- 685 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA----- 685 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----
Confidence 88889999999999999999988765 667888999999999999998 999999999 69999999999986
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
|..+.|++|-+.|+|.+. ||.|-+|.+..
T Consensus 686 VTG~kF~nDCkHlISvsg-----------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSG-----------DGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecC-----------CceEEEEECch
Confidence 789999999999999876 99999999854
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=189.82 Aligned_cols=234 Identities=12% Similarity=0.159 Sum_probs=185.3
Q ss_pred eeeec-cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc---eEEEEecCCCCccE
Q 011970 179 LFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI---MLLIFNRSSSHVPL 252 (474)
Q Consensus 179 lf~~~-~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~---~la~~s~~s~D~tI 252 (474)
+|... |...+.+||- +|.++||||.|.||+|+|+..-..+.++. .+.|.++.|.|.- .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 55543 5666667876 59999999999999999999877777664 5789999999643 66665 668999
Q ss_pred EEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEE
Q 011970 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 253 kLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS 330 (474)
-+|++..-+++++|+.|.+.|..++..| .++|+.+ +.|+.+++||+-+|+--.+++ .|. ...|.|+|.|..|+-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEE
Confidence 9999999999999999999999999874 3566665 899999999999987443322 232 234889999999988
Q ss_pred EcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 331 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 331 ~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..-+.|-||.++ ..+...++...- +.++-|- ++.+|+.|.. |+.|++||-.++.|+..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 887789999995 666666654422 2234343 5666776654 89999999988999999999
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE--EcCCCCEEEEEcCCCcEEEccC
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla--fSpDg~~LaSgs~DgtVklWd~ 474 (474)
|.+ +|-+++ -.|++.+|+|+|.||.|++||+
T Consensus 248 H~~----------------------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HEN----------------------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred chh----------------------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 996 677766 3789999999999999999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=186.05 Aligned_cols=328 Identities=17% Similarity=0.277 Sum_probs=229.3
Q ss_pred hhcccccccCCcccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEee---ccEEEEeeCCCeEEeee
Q 011970 38 LQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA---RDIVFALAHSGVCAAFS 114 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s---~~~las~s~dgtiklW~ 114 (474)
|.-||-+..+.-.+.+...|+|.-.++|...-| |.++ |+..|.++.+. |++++||+-||.+.+||
T Consensus 5 l~aRetG~e~ns~~rR~~s~rRil~L~Ln~d~d----------~~r~--HgGsvNsL~id~tegrymlSGgadgsi~v~D 72 (397)
T KOG4283|consen 5 LKARETGQESNSFARRFKSQRRILSLQLNNDKD----------FVRP--HGGSVNSLQIDLTEGRYMLSGGADGSIAVFD 72 (397)
T ss_pred hhhhhhcCCCchHHHHHHhhhhhheeeccCCcc----------eecc--CCCccceeeeccccceEEeecCCCccEEEEE
Confidence 445677755544455566677777777765322 2444 78888888887 99999999999999999
Q ss_pred ccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEe
Q 011970 115 RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (474)
Q Consensus 115 ~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs 194 (474)
++ |...-+ ...|| |+..-+ |.... +..|.-.|.++-+-
T Consensus 73 l~--------n~t~~e----------~s~li--------------~k~~c~--v~~~h--------~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 73 LQ--------NATDYE----------ASGLI--------------AKHKCI--VAKQH--------ENGHKYAISSAIWY 110 (397)
T ss_pred ec--------cccchh----------hccce--------------eheeee--ccccC--------CccceeeeeeeEEe
Confidence 87 221101 00122 122211 11111 11111112233333
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC---CceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|-|--..+|+|.|.|+||||.+|-+....+. .+.|.+-+.|| ...|++.+ -.|..|+|-|++.|.+-++|.||.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g--tr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG--TRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe--cCCCcEEEEeccCCcceeeecccc
Confidence 4444489999999999999999988888887 56899999998 23444442 346789999999999999999999
Q ss_pred cceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-ceEEe--------------ccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 271 HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEV--------------SRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg-~~~~~--------------l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
+.|.+|.|+ |..+.+|+ ++.|++||+||++.. -|..+ ...|...|..++|+.||..+++.. |
T Consensus 189 ~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 189 DGVLAVEWS-PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred CceEEEEec-cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 999999998 55777777 689999999999965 34333 345778899999999999999998 9
Q ss_pred CcEEEEeCC-CcE-EEEec--cCCCCcCCCCeeEEEE---CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 334 RTVAVWNFR-GEL-VTSFE--DHLLWHPDCNTNNIYI---TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 334 ~tIklWd~~-G~l-l~tl~--gH~~~~~~~~v~svaf---SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
..+++|+.. |+- +..+- -|... .+.+| +-+...++-- -.|+++-|.++.+|..++-
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~------~~~~~~~~~~~s~vfv~~-----------p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQT------TSFAVHIQSMDSDVFVLF-----------PNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred cceEEeecccCccccccccccccccc------ccceEEEeecccceEEEE-----------ecCCeEEEEEccCceEEEe
Confidence 999999984 752 22111 01110 11222 2222222211 1378999999999999999
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|.+|-. .|...+|-||=+++++|+.|+.|..|-
T Consensus 331 l~~h~k----------------------------------~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 331 LSTHLK----------------------------------RINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eecccc----------------------------------eeeEEeecCchhhhhccccCCcccccc
Confidence 999953 899999999999999999999998884
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=181.73 Aligned_cols=273 Identities=16% Similarity=0.139 Sum_probs=207.2
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
|+..+.+.|-+|-|+|.++.|+.+|+|| +.+++++..-.+.. .|.++ ..+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDg----------slrlYdv~~~~l~~---~~~~~--~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDG----------SLRLYDVPANSLKL---KFKHG--APLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccC----------cEEEEeccchhhhh---heecC--Cceeeeecc--CCceEEE
Confidence 4445788999999999988888878765 77788876554422 35543 445578996 4567889
Q ss_pred ecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
|+-|++||+.|+.+++...... ++.|++|-+++ .+.++++ |=|++||+||..+-.+.-++.. ...|.+++ -
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~---v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD---V 143 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccccccccccc-CceEEEEe---c
Confidence 9999999999999998766664 67899999997 4455554 5589999999877445555542 23556666 4
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEe--ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE----EEEeccCC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL----VTSFEDHL 353 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l----l~tl~gH~ 353 (474)
.+.+|++|..|..+.+||+++-..-.. -..-...+++|++.|++.=++.+| ||.|.+=.++ -++ .-.|+.|.
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 478999999999999999998654321 122346789999999999899999 9999887775 422 34677775
Q ss_pred CCcCCC----CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 354 LWHPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 354 ~~~~~~----~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
....+. .||+|+|+|=-+++|||+. ||-|.+||+.+-|-+..|..-..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~~----------------- 275 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYET----------------- 275 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCCC-----------------
Confidence 521111 3899999999999999754 99999999999998888866542
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.|.+++|+.||..||.|+.
T Consensus 276 -----------------SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 -----------------SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -----------------ceEEEEeccCCCeEEEEec
Confidence 6999999999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=191.73 Aligned_cols=292 Identities=13% Similarity=0.171 Sum_probs=218.8
Q ss_pred eeeEeecCC--CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 120 RICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 120 ~l~~l~g~~--~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
+|+-+|..| ...|.||-|.|.-+.|++|+ .| ++++|+. ..||.+.-+.-...+ --.+...+|. |+
T Consensus 202 rlkDaNa~~ps~~~I~sv~FHp~~plllvaG----~d------~~lrifq-vDGk~N~~lqS~~l~-~fPi~~a~f~-p~ 268 (514)
T KOG2055|consen 202 RLKDANAAHPSHGGITSVQFHPTAPLLLVAG----LD------GTLRIFQ-VDGKVNPKLQSIHLE-KFPIQKAEFA-PN 268 (514)
T ss_pred eecccccCCcCcCCceEEEecCCCceEEEec----CC------CcEEEEE-ecCccChhheeeeec-cCccceeeec-CC
Confidence 344455433 25799999999999999865 56 7888887 456653311100011 1234568998 79
Q ss_pred Ce-EEEEecCCCcEEEeecCCCeEEE-----EEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 198 GK-VLTYSAQDSIYKVFDLKNYTMLY-----SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 198 Gk-~LaS~s~D~tiKlWdl~tg~~l~-----tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|+ .+.+++...-+..|||.+.+..+ ......+....+|| +..||+. +..+-|.|....|++.+.+|+- .
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~---G~~G~I~lLhakT~eli~s~Ki-e 344 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA---GNNGHIHLLHAKTKELITSFKI-E 344 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc---ccCceEEeehhhhhhhhheeee-c
Confidence 99 89999999999999999987433 22234577889997 6666665 4457899999999999999984 3
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeCC------
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR------ 342 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~~------ 342 (474)
+.+..+.|+ .++..|++.+.+|.|-+||+++..|++.+.... -.-.+++.|++|++||+|| -|.|-|+|.+
T Consensus 345 G~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 345 GVVSDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred cEEeeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 678999998 567888889999999999999999998865432 2345788899999999999 8999999942
Q ss_pred -CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 343 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 343 -G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
-+.+.++..-... |.++.|+||+|+||.+|. ..+..+||=.+.+-.. + +++|
T Consensus 424 ~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~TV---F---sNfP------- 476 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCTV---F---SNFP------- 476 (514)
T ss_pred CCCchhhhhhhhee-----eeeeeeCcchhhhhhhhh---------ccccceEEEeccceee---e---ccCC-------
Confidence 2356666554443 789999999999999885 4578999988765322 2 2222
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.-+..+..|++|+|||.|-+||-|+.+|.|+||..
T Consensus 477 ------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 477 ------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 11233349999999999999999999999999963
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=181.49 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=208.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L 201 (474)
.+...+++.|-+|+|||.-+.|+.|+ |-| .++|+|+++. |.+.. ....+ +-+.|..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEc-cCCceE
Confidence 45556889999999999655555433 455 6999999966 66533 12222 35667789998 699999
Q ss_pred EEecCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCc---eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPGI---MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg~---~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
.+|+-|+++|+|||++++.... .|+..|..+.|=++. .|+++ |=|+|||.||.+.-+.+.++. .-.++...+
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999999986553 467899999998533 45655 558999999999999998887 336777777
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE--EEEecc
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFED 351 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l--l~tl~g 351 (474)
.. ...++++-.|..|.+++++++.-.. .-..-.-.+++|+.-+|++.+|-|+ .|.+.|-.++ +.. --+|+-
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 53 3566778899999999999875321 1111223678899888888899999 9999999995 633 347777
Q ss_pred CCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 352 HLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 352 H~~------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
|.. -++ .||+|+|.|.-..|++++. ||++..||-....-|.+.+.|.-
T Consensus 241 HR~~~~~~~~VY--aVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~q------------- 294 (347)
T KOG0647|consen 241 HRSTNSVNDDVY--AVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHPQ------------- 294 (347)
T ss_pred eccCCCCCCceE--EecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCCC-------------
Confidence 763 133 3899999999999999754 99999999766666666666663
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEE
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 463 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg 463 (474)
.|+...|+.+|+++|=+
T Consensus 295 ---------------------pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 295 ---------------------PITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---------------------ccceeEecCCCCEEEEE
Confidence 89999999999998744
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-19 Score=188.62 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=171.4
Q ss_pred ccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 79 PFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 79 ~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.++..+ ....|..++++ +..|+|.+-+|+|--||+.+++.+..+.- ..+.|||++.+|-++.|+.+ .+|
T Consensus 62 ~vi~g~--~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~Ig----cdd--- 131 (691)
T KOG2048|consen 62 PVIHGP--EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIG----CDD--- 131 (691)
T ss_pred EEEecC--CCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEee----cCC---
Confidence 444444 67889999999 99999999999999999999999999885 66899999999999988874 466
Q ss_pred eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------C-C--
Q 011970 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------D-K-- 227 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~-~-- 227 (474)
.-+.+.++..++.... ..|.-+ ...+.+|+|+ |+|..||.|+.||-||+||++.|+.++... . +
T Consensus 132 ---Gvl~~~s~~p~~I~~~-r~l~rq-~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 132 ---GVLYDFSIGPDKITYK-RSLMRQ-KSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred ---ceEEEEecCCceEEEE-eecccc-cceEEEEEec-CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 4444555555554211 122222 3457789998 799999999999999999999999877221 1 2
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-- 305 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-- 305 (474)
-||+|.|=-+++|+++.+ -++|+.||-++|++++++..|...|.+++-. +.++++.+++.|+.|-.+-..++.-
T Consensus 206 iVWSv~~Lrd~tI~sgDS---~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~w 281 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDS---AGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEW 281 (691)
T ss_pred EEEEEEEeecCcEEEecC---CceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccce
Confidence 389999997888888754 4799999999999999999999999999965 5568899999998888777665432
Q ss_pred EEe--ccccCCceEEEEE
Q 011970 306 MEV--SRTEFMTPSAFIF 321 (474)
Q Consensus 306 ~~~--l~~h~~~v~sv~F 321 (474)
+.. ..+|...|.+++.
T Consensus 282 v~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 282 VINSRRDLHAHDVRSMAV 299 (691)
T ss_pred eeeccccCCcccceeeee
Confidence 221 2345555555554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=196.59 Aligned_cols=312 Identities=13% Similarity=0.133 Sum_probs=233.4
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|--|...|++|... |+.||+|+.|||+|+|.+.||+|+++++. ++.|+||+|+|.++.=+.+-+.+ +
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~------- 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E------- 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------
Confidence 33488899988887 99999999999999999999999999986 57899999999998544433333 1
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEe----cCCCcEEEeecC------CCeEEEEEcCCcEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS----AQDSIYKVFDLK------NYTMLYSISDKHVQE 231 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~----s~D~tiKlWdl~------tg~~l~tl~~~~V~~ 231 (474)
.+-|=+-.-|.-.. +.+ .-..|+++ ..|.++-.|.-. -|-|+..-+...|..
T Consensus 465 ~~~ivnp~~G~~~e---------------~~~---t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLE---------------VGP---TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred ceEEeCccccchhh---------------hcc---hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 12222212221100 000 01112221 234466677533 232555555789999
Q ss_pred EEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc
Q 011970 232 IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 232 vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~ 310 (474)
|.++ .|.+|++....+....|-|-++..+..+--|.--.+.+..|.|.|. --+|+++. -..|+|||+..+++++.+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHh
Confidence 9999 6999999988877778888888777776667544467899999853 44555542 3579999999999998888
Q ss_pred ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 311 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
....++++++.+|.|.-|+.++ |+.+-..|++ .+..++|.-|... |++|+|++-=-++||||.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd--------- 670 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD--------- 670 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC---------
Confidence 8888999999999999999999 9999888985 5689999999886 689999999999999986
Q ss_pred CCCCeEEEEe------CCCCe---EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 011970 388 GSAGSINVSS------ILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 458 (474)
Q Consensus 388 s~DgtIklWd------i~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~ 458 (474)
||++-++. +...- .|+.|+||.. . .+ -.|-.+.|+|.-.
T Consensus 671 --Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~--~-------~~---------------------~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 671 --DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK--T-------ND---------------------LGVLDTIWHPRQP 718 (733)
T ss_pred --CCcEEEEeeeeehhhhcCCceEeeeeccCcee--e-------cc---------------------cceEeecccCCCc
Confidence 99998884 22111 3578889874 0 00 1588899999999
Q ss_pred EEEEEcCCCcEEEc
Q 011970 459 EIYTGNRHGLVHVW 472 (474)
Q Consensus 459 ~LaSgs~DgtVklW 472 (474)
.|+|++.|||||||
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 99999999999999
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=183.73 Aligned_cols=240 Identities=15% Similarity=0.169 Sum_probs=176.5
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEE---cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl---~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
|..++|||...-.|+.+|.|++||+|++++ |...-.- ++..|.+++||.++..+.++ +.|+.+|+||+++||..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g--~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSG--GCDKQAKLWDLASGQVS 107 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEee--ccCCceEEEEccCCCee
Confidence 447999964666788999999999999986 5543222 25789999999644444332 55899999999999665
Q ss_pred EEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 264 KVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
++.-|...|+.+.|.+.-+- .|++||+|+|||.||.++...+.++.= ...+++... ...+++.+. ++.|.++++
T Consensus 108 -~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 108 -QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred -eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEc
Confidence 45568899999999975553 455579999999999999888766331 124555433 334566665 999999999
Q ss_pred C-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--eEEEEecCCCCCCCCc
Q 011970 342 R-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVD 417 (474)
Q Consensus 342 ~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gH~~~~~~~ 417 (474)
+ +. ..+..+-...|. +++|+.-+|++..|-||- .|.+-|-.|..+ +---+|+.|.. .+.
T Consensus 184 ~n~~te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~--~~~ 246 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS--TNS 246 (347)
T ss_pred CCCcchhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc--CCC
Confidence 5 32 334444444554 789999999888888876 889999998887 55567888873 000
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+..-.=.|.+|+|+|.-.+|||++.||+.-.||
T Consensus 247 -----------------------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 247 -----------------------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred -----------------------CCCceEEecceEeecccceEEEecCCceEEEec
Confidence 000001688999999999999999999999998
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=182.48 Aligned_cols=231 Identities=15% Similarity=0.204 Sum_probs=172.8
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCC--Ce--EEEEE--cCCcEEEEEEc-C--CceEEEEecCCCCccEEEEecC
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YT--MLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--g~--~l~tl--~~~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~ 258 (474)
+..|.|+ +-|+.+|+||.|+++||||.+. |+ |-... ++..|+.|.+- | |+.+|+. +.|+|++||.=.
T Consensus 16 ihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~iWEE~ 91 (361)
T KOG2445|consen 16 IHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceeeeeec
Confidence 4489997 7999999999999999999754 33 33333 36789999998 6 8988886 679999999631
Q ss_pred ---------CCeEEEEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCC-CceEE-----e-------ccccCCc
Q 011970 259 ---------DGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AELME-----V-------SRTEFMT 315 (474)
Q Consensus 259 ---------tG~~L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~t-g~~~~-----~-------l~~h~~~ 315 (474)
.-....+|......|..|.|.|..-+ +|++.+.||++|||+.-. .++.+ . +..+...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 11234567766678899999865545 455568999999997654 22211 1 1224445
Q ss_pred eEEEEEcC---CCcEEEEEcCC------cEEEEeC-C-C-cE--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEe
Q 011970 316 PSAFIFLY---ENQLFLTFRNR------TVAVWNF-R-G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYC 377 (474)
Q Consensus 316 v~sv~Fsp---dg~llaS~sD~------tIklWd~-~-G-~l--l~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s 377 (474)
...+.++| .-++||.|+|. .++||.. + | ++ +.+|.+|... |.+|+|.|+ -++||.+|
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEee
Confidence 56677765 46789999866 9999998 3 5 44 5589999987 689999996 48999999
Q ss_pred cCCCccccccCCCCeEEEEeCCCC--------------------eEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTG--------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG--------------------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
+ || |+||++..- +.+..+.+|++
T Consensus 247 k-----------Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~------------------------- 289 (361)
T KOG2445|consen 247 K-----------DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG------------------------- 289 (361)
T ss_pred c-----------Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-------------------------
Confidence 8 99 999998521 12223334443
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||.|.|+--|.+|+|.+.||+||||.
T Consensus 290 ---------~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 290 ---------EVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ---------ceEEEEEeeeeeEEeecCCCceeeehh
Confidence 899999999999999999999999995
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=180.32 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=195.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccc--c---ceeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET--N---RRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~t--g---~~l~~-l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|..+.|+ |..||+.+.|++|+||++.. + +||+. +.- +--..|+|+||-..++..-. ..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~--~g~---- 155 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVK--RGN---- 155 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEc--cCC----
Confidence 67778888888 99999999999999999763 2 23331 221 12467899999998876442 233
Q ss_pred eeeEEEEeEe---ccCCCCCccce-----eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--c
Q 011970 159 KCRSTKIEYI---RRGKPDSGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--H 228 (474)
Q Consensus 159 k~~~~~iw~i---~~G~~~~~~~l-----f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~ 228 (474)
++.++-. ..|.....+.- |+.-|..-+-.+-.- .++++|+|+|.|-+|-|||++ |+.|.++..+ .
T Consensus 156 ---~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 ---KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred ---EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 4444443 34443211110 111111222223343 589999999999999999998 9999998643 4
Q ss_pred EEEEEEcCCceEEEEecCCCCccEEEEec---CCCeE-----EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 229 VQEIKISPGIMLLIFNRSSSHVPLKILSI---EDGTV-----LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 229 V~~vafSpg~~la~~s~~s~D~tIkLWdi---~tG~~-----L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
-...|.||++++++.+ +.--.||+|.+ .+|+. ...|+||+..|...+|+ ++.+++++.|.||++||||.
T Consensus 231 n~~aavSP~GRFia~~--gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVS--GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccceeeCCCCcEEEEe--cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeec
Confidence 5678999977666553 22345999975 34433 24677999999999998 56788999999999999986
Q ss_pred CC-------CceEEec----cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEEC
Q 011970 301 RN-------AELMEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYIT 367 (474)
Q Consensus 301 ~t-------g~~~~~l----~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafS 367 (474)
.- .+.+++. ..-...+-.+..+|+|+.||.+.-.+++++..+ |+-.-+|+. |..- +.+|+|+
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~-----Is~is~~ 382 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTT-----ISSISYS 382 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCc-----eeeEEec
Confidence 52 2233332 222345568899999999998888899999995 998888885 4432 6899999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|||++||+++ |.-+++.-
T Consensus 383 ~~g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 383 SDGKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CCCcEEeeec------------ceeeeeec
Confidence 9999999975 78888865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=189.81 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=202.5
Q ss_pred EEEEeeCCCe-EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 100 IVFALAHSGV-CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 100 ~las~s~dgt-iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
++.+.|.|.. |..||+.||..+-++.|+-...-.++.. -++++|+++. ++=..+.+|.+...+... +.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq---------~~rp~l~vw~i~k~~~~~-q~ 77 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQ---------LKRPLLHVWEILKKDQVV-QY 77 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeec---------ccCccccccccCchhhhh-hh
Confidence 3455666666 9999999999888887751121122211 1225666643 222577788765443322 00
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEe
Q 011970 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 179 lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWd 256 (474)
.-- -+.+-.++=+ |+|.+|+.|..-+.+.+|.+.+|.+|+.++.+ .|..++||.+++.+++ +|.|+-|.+|+
T Consensus 78 ~v~---Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT--gskDg~V~vW~ 151 (476)
T KOG0646|consen 78 IVL---PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT--GSKDGAVLVWL 151 (476)
T ss_pred ccc---ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe--cCCCccEEEEE
Confidence 000 1123366665 79999998889999999999999999999764 6999999964444444 36689999998
Q ss_pred cCC---------CeEEEEEeecCcceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 257 IED---------GTVLKVFYHLLHRNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 257 i~t---------G~~L~tl~~h~~~v~~V~F~~-~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
+-+ -+.+..|.+|.-.|..+.... +-+.+++++|+|.|+|+||+..|.++.+.. -...+.+++..|-.+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccccc
Confidence 632 356778888877786666432 235799999999999999999999886633 224788999999999
Q ss_pred EEEEEc-CCcEEEEeC-----------------CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 327 LFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 327 llaS~s-D~tIklWd~-----------------~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.+-.|. +|.|-+-++ +++.++.|.||.+. ..|..++++-||.+|+||+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~---------- 297 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDE---------- 297 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCC----------
Confidence 988888 998877664 23456788999983 13789999999999999987
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011970 389 SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~g 409 (474)
||+|.|||+.+-||++++..
T Consensus 298 -dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 298 -DGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred -CCCEEEEecchHHHHHHHhh
Confidence 99999999999999999863
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=201.74 Aligned_cols=222 Identities=12% Similarity=0.192 Sum_probs=178.4
Q ss_pred CCeEEEEecCCCcEEEeecCC---CeEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 197 NGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~t---g~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
+.++||+++..|.|-+|||.- .++++.+. ...|..+.|++ -.+|+++ |.|++||+||++.-+-..+|.+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---SQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG---SQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec---CCCceEEEEeeeccccccccccc
Confidence 457999999999999999975 34555554 45799999996 3445543 77999999999998889999998
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 346 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll 346 (474)
...++.|.|+|-.+.+++++.+.|++|+||++. .+|...+..|.+.|..+.++|++.+||||+ |++|||||.+ ++..
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 899999999987788888899999999999997 456777899999999999999999999999 9999999996 4432
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSS 423 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~-LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~ 423 (474)
....-|+.. .|..|.|=|+-++ ||+++. ..|-.|++|||. ... -+++..|++
T Consensus 256 ~~~tInTia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvr-RPYIP~~t~~eH~~----------- 310 (839)
T KOG0269|consen 256 PKHTINTIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVR-RPYIPYATFLEHTD----------- 310 (839)
T ss_pred ceeEEeecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeec-cccccceeeeccCc-----------
Confidence 222223332 2788999998654 555543 458999999984 333 478889986
Q ss_pred CCCccccccccccccccccccccCEEEEEEcC-CCCEEEEEcCCCcE
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 469 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtV 469 (474)
.|+.++|.. |...|-|+|.|++|
T Consensus 311 -----------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 -----------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -----------------------cccceeccCCCceeeEeecCccHH
Confidence 677788865 67779999999987
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=195.20 Aligned_cols=233 Identities=12% Similarity=0.149 Sum_probs=187.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCC-eEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe---EE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT---VL 263 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg-~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~---~L 263 (474)
.|.|+ |+|+.|.+++.|+-||+|+...- +.-.++ ++..|.+++---+ .++++ +.+++|.+..+..|+ .|
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 68997 79999999999999999986543 222222 3566777776544 66665 568999999988876 45
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
..|. -.++.++|+ -+|..+++||+|-.|||-++..+....++++|...|..+.|.|++++||+++ ||+|++||++
T Consensus 93 ~Rft---lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFT---LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeee---ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 5555 567888987 5677888899999999999999999999999999999999999999999999 9999999995
Q ss_pred -CcEEEEeccCCC---CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 343 -GELVTSFEDHLL---WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 343 -G~ll~tl~gH~~---~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|.+..+|.+=.. ......+..++|+|+|-.+|-.+- |++|++++..+++.+.+|.+...+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s----- 232 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS----- 232 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc-----
Confidence 999888875321 100112467899999655555554 999999999999999999875431
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+..+.|||.|++||++.-||.|-|||.
T Consensus 233 ---------------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 233 ---------------------------SKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ---------------------------cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 14888999999999999999999999983
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=175.05 Aligned_cols=234 Identities=13% Similarity=0.158 Sum_probs=190.4
Q ss_pred cccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC--EEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~--~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..++.+++.++-++||||.|-||+|||+.+.+.+..|-- |.+.|.++-|.|+-. -|++++ +| +.+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s----dD------G~i 109 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS----DD------GHI 109 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec----CC------CcE
Confidence 38889999999999999999999999999999999999984 889999999998874 578855 66 788
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLL 241 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la 241 (474)
-+|++..=++..+++ .|.+.|..++.. |.||+-.|-+.|+.+++|||-+|+--+.+. .+.-..|.|+| |..++
T Consensus 110 ~iw~~~~W~~~~slK----~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK----AHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEEcCCeEEeeeec----ccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 899864434333222 234447789997 799999999999999999999998655554 22333499998 66677
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
...+ ..|-+|-+++-.+...++. ..++..+-|. ++++|++|++|++|++||-.++.++..+.+|...|-++.|
T Consensus 185 v~~~----~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 185 VSGR----NKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEec----cEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 7654 4689999988777766653 2456667764 4789999999999999999999999999999999999985
Q ss_pred --cCCCcEEEEEc-CCcEEEEeCC
Q 011970 322 --LYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 322 --spdg~llaS~s-D~tIklWd~~ 342 (474)
.|++.+|+|+| ||.|++||++
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcc
Confidence 38999999998 9999999996
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-19 Score=181.40 Aligned_cols=257 Identities=12% Similarity=0.190 Sum_probs=190.0
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-CCcEEEeecCCCeEE--EEEcCCcEEEEEEcCC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTML--YSISDKHVQEIKISPG 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-D~tiKlWdl~tg~~l--~tl~~~~V~~vafSpg 237 (474)
+++.+||+++|...-. |.....--..+..- .++++|+++.. ..-+-+|.+..-... +..-.+.|.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~~~---ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQ---YKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCceeEE---ecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 6688999999985211 11110000001211 35567776653 446889987543322 2333567999999996
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---------CceEEe
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---------AELMEV 308 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t---------g~~~~~ 308 (474)
+.++.++ ...+.|.||.+.+|.+|..+..|-..+.++.|+ .++..++++|.|+-|.+|++-. -+.+..
T Consensus 93 G~~l~ag--~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 93 GYFLLAG--TISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred ceEEEee--cccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 6666653 234689999999999999999999999999998 6788888899999999997642 356788
Q ss_pred ccccCCceEEEEEcCC--CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 309 SRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 309 l~~h~~~v~sv~Fspd--g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
+.+|+..|+.+-..+. .-.+.|+| |+|||+||+. |.++.++.=... +.++++.|-+..+..|..
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt~------ 237 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGTE------ 237 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecCC------
Confidence 9999999999876654 45677888 9999999996 999988764332 689999999999888765
Q ss_pred cccCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCE
Q 011970 385 WMEGSAGSINVSSILT----------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 448 (474)
Q Consensus 385 ~~~s~DgtIklWdi~t----------------G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 448 (474)
+|.|-+-++.+ +.-+..+.||.+ =..|
T Consensus 238 -----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~--------------------------------~~~I 280 (476)
T KOG0646|consen 238 -----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN--------------------------------ESAI 280 (476)
T ss_pred -----cceEEeeehhcCCcccccccccccccccceeeeeccccC--------------------------------Ccce
Confidence 88887766532 233455556653 0289
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 449 TSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 449 ~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
++|++|-||..|+||+.||+|.|||.
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999999999999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=172.38 Aligned_cols=204 Identities=15% Similarity=0.094 Sum_probs=157.5
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-------EEEEc----------CCcEEEEEEcC--CceEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSIS----------DKHVQEIKISP--GIMLLIFNR 245 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-------l~tl~----------~~~V~~vafSp--g~~la~~s~ 245 (474)
-+.|.++..++..|+++.||+.||.|-||||++-.- .+... ...|.++.+=| .+|+.++
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss-- 120 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS-- 120 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc--
Confidence 345567888888999999999999999999986541 11111 12477777776 6777665
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC-CeEEE-EeCCCcEEEEECCCCceEEeccccCCceEEEEEcC
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 323 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~-~~ll~-~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp 323 (474)
|.|+|+|+||+.|-|...+|+-. +.|.+-+.+|-.- ..|++ +-.|-.|||-|+++|.+-.+|.||.+.|-+|.|+|
T Consensus 121 -SFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 -SFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred -cccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 77999999999998888887632 3455545543322 34444 45899999999999999999999999999999999
Q ss_pred CCcE-EEEEc-CCcEEEEeCC--CcEEEEeccCCC---------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 324 ENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 324 dg~l-laS~s-D~tIklWd~~--G~ll~tl~gH~~---------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
-... |+|++ |++||+||++ --|..+|..|.. ..-...|++++|+.||.++++... |
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-----------d 267 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-----------D 267 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------c
Confidence 8876 55677 9999999995 468888887772 111125799999999999999765 9
Q ss_pred CeEEEEeCCCCeE
Q 011970 391 GSINVSSILTGKC 403 (474)
Q Consensus 391 gtIklWdi~tG~c 403 (474)
..+++|+...|+-
T Consensus 268 ~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 268 DRIRVWNMESGRN 280 (397)
T ss_pred cceEEeecccCcc
Confidence 9999999988864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=172.20 Aligned_cols=231 Identities=11% Similarity=0.099 Sum_probs=177.2
Q ss_pred ccEEEEeeCCCeEEeeecccc---ceeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 98 RDIVFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg---~~l~~l~g~~~~~i~sv~fsp--dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
|..||+.|.|++||+|....+ +.|.+|.| |.++|+-|+|-- .|..|||+| +| +.+-||.-..|+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScs----YD------gkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCS----YD------GKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEee----cC------ceEEEEecCCCc
Confidence 899999999999999997754 57999998 889999999954 799999987 55 688899977776
Q ss_pred CCCccceeee-ccccCceEEEEeCCC--CeEEEEecCCCcEEEeecCCC--eEEEEE---cCCcEEEEEEcCC-------
Q 011970 173 PDSGFALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNY--TMLYSI---SDKHVQEIKISPG------- 237 (474)
Q Consensus 173 ~~~~~~lf~~-~~~~~~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~tg--~~l~tl---~~~~V~~vafSpg------- 237 (474)
..+ +.++ .|-..+.+|+|- |+ |-+||++|.||+|.|.+.++- .....+ |.-.|.+|.+.|.
T Consensus 92 w~k---~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 92 WTK---AYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred hhh---hhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 533 2332 245567789997 55 678999999999999987642 233333 3346889999874
Q ss_pred --------ceEEEEecCCCCccEEEEecCCCe--EEEEEeecCcceeEEEEEecCC---CeEEEEeCCCcEEEEECCC--
Q 011970 238 --------IMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN-- 302 (474)
Q Consensus 238 --------~~la~~s~~s~D~tIkLWdi~tG~--~L~tl~~h~~~v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~t-- 302 (474)
.+|+++ +.|..||||+..+++ .-++|++|.++|+.|++.|.-+ .+|+++++|+++-||-...
T Consensus 168 ~~~~~~~~krlvSg---GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSG---GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred ccCcccccceeecc---CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 345554 679999999988774 3467999999999999975332 4778889999999997652
Q ss_pred CceEE-eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcEE
Q 011970 303 AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELV 346 (474)
Q Consensus 303 g~~~~-~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~ll 346 (474)
++-.. +|..-...++.+.||+-|.+|+.+. |+.|++|-- +|+-.
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 22222 3344446799999999999999988 999999985 36643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=166.66 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=178.8
Q ss_pred EEEeeCCCeEEeeeccc-cc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCc
Q 011970 101 VFALAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSG 176 (474)
Q Consensus 101 las~s~dgtiklW~~~t-g~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~ 176 (474)
.++.++|+.|.+|++.+ |+ ++.++.. .+....++++|||+.|..++. .+ ..+.+|++. .|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~---~~------~~i~~~~~~~~g~l~~- 72 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVR---PE------FRVLSYRIADDGALTF- 72 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEEC---CC------CcEEEEEECCCCceEE-
Confidence 45568899999999975 43 6666652 244678999999999876542 22 467778875 454310
Q ss_pred cceeeeccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCC-Ce---EEEEEcC-CcEEEEEEcCC-ceEEEEecCCCC
Q 011970 177 FALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YT---MLYSISD-KHVQEIKISPG-IMLLIFNRSSSH 249 (474)
Q Consensus 177 ~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~t-g~---~l~tl~~-~~V~~vafSpg-~~la~~s~~s~D 249 (474)
+-.......|..++|+ |||+.|.+++ .++.|.+||+++ |. .+..+.. .....++|+|+ ..+++.. ..+
T Consensus 73 --~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~ 147 (330)
T PRK11028 73 --AAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LKE 147 (330)
T ss_pred --eeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CCC
Confidence 0111123356789998 7999877766 488999999963 43 3344433 35678999985 4555553 457
Q ss_pred ccEEEEecCC-CeEEE----EEe-ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCce--EEeccc------c
Q 011970 250 VPLKILSIED-GTVLK----VFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAEL--MEVSRT------E 312 (474)
Q Consensus 250 ~tIkLWdi~t-G~~L~----tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~--tg~~--~~~l~~------h 312 (474)
..|.+||+.+ |++.. +.. ........++|+ |++.++.+.. .+++|.+||+. +++. ++.+.. +
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999987 43321 111 011234678887 6778887775 49999999997 3433 333221 1
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
..++..++|+|||+.|.++. +++|.+|+++ ++.+ ++.+|.... ...+.++|+|||++|+.++.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~--~~p~~~~~~~dg~~l~va~~---------- 293 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE--TQPRGFNIDHSGKYLIAAGQ---------- 293 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc--ccCCceEECCCCCEEEEEEc----------
Confidence 22445688999999888874 8899999983 4322 333443210 01357999999999998764
Q ss_pred CCCeEEEEeC--CCCeE
Q 011970 389 SAGSINVSSI--LTGKC 403 (474)
Q Consensus 389 ~DgtIklWdi--~tG~c 403 (474)
.+++|.+|++ .+|..
T Consensus 294 ~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 294 KSHHISVYEIDGETGLL 310 (330)
T ss_pred cCCcEEEEEEcCCCCcE
Confidence 3899999987 45653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-18 Score=184.51 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=180.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC-CCCCccceeeeccccCceEEEEeCCCCeEEEEec
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s 205 (474)
.|.+.-..|.|.|+|+.|.+++. + +.|++|....- +...++-. + ...+.+++ .++..|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgs---d-------g~ir~~~~~sd~e~P~ti~~--~--g~~v~~ia---~~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGS---D-------GDIRKWKTNSDEEEPETIDI--S--GELVSSIA---CYSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecC---C-------CceEEeecCCcccCCchhhc--c--CceeEEEe---ecccceEEee
Confidence 36677899999999999998763 3 47888875433 11111000 1 12222343 3556899999
Q ss_pred CCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
.|++|.+....+++.--.|. .-.+..++|+- |.++|.+ |+|-.|||-+..++...++|++|...|..|.|. |.
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 99999999988877432222 34788999995 6666654 668999999999999999999999999999998 45
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEecccc--------CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h--------~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
++.|++.+-||+|+|||++++.+..++.+- ...+..++|+|+|-.||... |++|++++.. ++....|.+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 677777889999999999999998776441 22445678999955555555 9999999995 8887777754
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
... ..+..+.|||+|+|||++.. ||.|-|||+.|
T Consensus 230 ~~s---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSS---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT 263 (933)
T ss_pred ccc---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc
Confidence 432 12678999999999999877 99999999986
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=169.61 Aligned_cols=320 Identities=13% Similarity=0.121 Sum_probs=234.0
Q ss_pred cccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 88 ~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+.-|.++.|. +.-+++|..+|+|-+|+..+++..++.. .|+..|.++-.-.+|. |.| |..| |.+-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt-llS----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT-LLS----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc-Eee----cCcc------ceEEec
Confidence 3669999999 6668999999999999999999888888 7999999999999997 555 4466 777777
Q ss_pred Ee--------------------ccCC----------------CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 167 YI--------------------RRGK----------------PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 167 ~i--------------------~~G~----------------~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
|= ..|+ +..+|.+-..+|..-.+.++-. |+-..|+++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 52 1111 1111111111222223367776 566788899999999
Q ss_pred EEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE
Q 011970 211 KVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 211 KlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
+||+ .-+++.+.. .+.+.+++|.|-+.+|++.. .+-.-+.|+++...+..-.. ...+..|.|+ |+|..|+++
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~---~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTA---TGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeec---cceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEe
Confidence 9999 456777665 67899999999668887643 35677889999554443334 6788999997 789999999
Q ss_pred eCCCcEEEEECCC-CceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE----------------EEEec
Q 011970 290 QENENLQILDVRN-AELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL----------------VTSFE 350 (474)
Q Consensus 290 ~~D~tIkIWDv~t-g~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l----------------l~tl~ 350 (474)
+.|+.|.|+-+.. |... +.-+.|...+..+.||+|+|+|.+-+ |--|-.|.. ++| +--|+
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~~~~~ts~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SECKQITSVKDVKWATYTCTLGFE 544 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc-ccCcccceecceeeeeeEEEEEEE
Confidence 9999999998874 4443 33344557889999999999999999 999999953 332 11121
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEecCCCCCCCCccccCCCCCCc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
--.. ..+.+++.++-+.+.++||||.. -|+|+|+.-.--+ .-+++.||+.
T Consensus 545 v~g~-s~~t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs~--------------- 597 (626)
T KOG2106|consen 545 VFGG-SDGTDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHSS--------------- 597 (626)
T ss_pred Eecc-cCCchHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeeccccc---------------
Confidence 1111 11234677777888888888754 7999999753211 2346677775
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-|++|+|.-+-+.|.|.+.|..|..|+.
T Consensus 598 -------------------~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 -------------------HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -------------------eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7999999999999999889999999974
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-17 Score=169.31 Aligned_cols=309 Identities=14% Similarity=0.143 Sum_probs=230.2
Q ss_pred cccEEEEEee----ccEEEEe--eCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 88 RTKVIEIVAA----RDIVFAL--AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 88 ~~~V~~i~~s----~~~las~--s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
...|..|+|| |..|... +.+..+.+||.+.+..+....- .+|+|....|.|-+..||.. +| . .
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nliit--~G-k-------~ 222 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLIIT--CG-K-------G 222 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEEEE--eC-C-------c
Confidence 4458889999 5555443 4567889999998888777763 66899999999988766542 22 1 3
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCce
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIM 239 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~ 239 (474)
.+.+|+.+.|-+.+.+-+|+...-+++.+|.|. +||+++ +|..+|+|-||+..+.+..+..+ +..|.++..--+++
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdvi-TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVI-TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEE-eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc
Confidence 567888888888777788887445888899998 799866 57789999999987777655554 56799988888889
Q ss_pred EEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE
Q 011970 240 LLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
|+++ +-|..|-+|| .+=+.++..+ ..-+.++.|+ |..++ |++|-.-++|--=.++++--+.+ .+|.+..|
T Consensus 301 llSG---gKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v-~gh~delw 372 (626)
T KOG2106|consen 301 LLSG---GKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGTTRNFILQGTLENGFTLTV-QGHGDELW 372 (626)
T ss_pred Eeec---CccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEeeccceEEEeeecCCceEEE-Eeccccee
Confidence 9984 5689999999 3333343332 3346677777 33344 77776555665556666655544 67888999
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCCCcEEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~G~ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.++..|+..+|+|++ |++++||| +-+++- .+++. +.++.|.|-| .||-|.. .|.--
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~--------~~~~~fhpsg-~va~Gt~-----------~G~w~ 431 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDP--------AECADFHPSG-VVAVGTA-----------TGRWF 431 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCc--------eeEeeccCcc-eEEEeec-----------cceEE
Confidence 999999999999999 99999999 433332 23221 4689999999 8888876 77777
Q ss_pred EEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 395 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+-|++|...+ ++.-.+ +.++.|.|||||.+||-||.|+.|.|+.
T Consensus 432 V~d~e~~~lv-~~~~d~----------------------------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 432 VLDTETQDLV-TIHTDN----------------------------------EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred EEecccceeE-EEEecC----------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 8898875444 332222 2899999999999999999999999874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-17 Score=164.67 Aligned_cols=263 Identities=12% Similarity=0.153 Sum_probs=172.7
Q ss_pred eEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEe-cCCCcEEEeecC-CCeE--EEEEc-CCcEEEEEE
Q 011970 161 RSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKHVQEIKI 234 (474)
Q Consensus 161 ~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~-s~D~tiKlWdl~-tg~~--l~tl~-~~~V~~vaf 234 (474)
+++.+|++.+ |++.. ...++. ...+..++|+ |||++|..+ ..++.|.+|++. +|++ +.+.. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~-~~~~~~--~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL-LQVVDV--PGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee-eeEEec--CCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 6788888853 54311 112222 2456679998 799988554 458899999996 5553 33333 345778999
Q ss_pred cCCc-eEEEEecCCCCccEEEEecC-CCe---EEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEE
Q 011970 235 SPGI-MLLIFNRSSSHVPLKILSIE-DGT---VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 307 (474)
Q Consensus 235 Spg~-~la~~s~~s~D~tIkLWdi~-tG~---~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~ 307 (474)
+|++ .+++++ -.++.|.+|+++ +|. .+..+.++ .....++|. |+++.++++. .+++|.+||+.+ +++..
T Consensus 88 ~~~g~~l~v~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 88 DHQGRFLFSAS--YNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCCCEEEEEE--cCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 9854 555553 236789999996 443 34444432 234567776 6777887765 779999999987 43321
Q ss_pred e-----ccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---Cc--EEEEeccCCC--CcCCCCeeEEEECCCCCEE
Q 011970 308 V-----SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 308 ~-----l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~--ll~tl~gH~~--~~~~~~v~svafSpDg~~L 373 (474)
. .......+..++|+|||++|.+.+ +++|.+|+++ |+ +++++..+.. ..+ .....+.|+|||++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccceeEEECCCCCEE
Confidence 0 011224578899999999987775 8999999994 33 3555543211 000 012468999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
..++. .+++|.+|++.+..-..++.+|.. -+ ...+.++|
T Consensus 243 yv~~~----------~~~~I~v~~i~~~~~~~~~~~~~~--~~-----------------------------~~p~~~~~ 281 (330)
T PRK11028 243 YACDR----------TASLISVFSVSEDGSVLSFEGHQP--TE-----------------------------TQPRGFNI 281 (330)
T ss_pred EEecC----------CCCeEEEEEEeCCCCeEEEeEEEe--cc-----------------------------ccCCceEE
Confidence 98754 378999999965433334445432 00 03346899
Q ss_pred cCCCCEEEEEcC-CCcEEEcc
Q 011970 454 DEERNEIYTGNR-HGLVHVWS 473 (474)
Q Consensus 454 SpDg~~LaSgs~-DgtVklWd 473 (474)
+|||++|+.++. +++|.+|+
T Consensus 282 ~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 282 DHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCCCEEEEEEccCCcEEEEE
Confidence 999999998886 99999995
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=177.36 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=150.5
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeE--EEEEcCCcEEEEEEc
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKIS 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~--l~tl~~~~V~~vafS 235 (474)
..+.|||. +|.... .+..+ ...+.+++|| |||+.||+.+.+ .+|.+||+.+|+. +..+.+ ....++||
T Consensus 184 ~~i~i~d~-dg~~~~--~lt~~--~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADY-DGFNQF--IVNRS--SQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECC-CCCCce--EeccC--CCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 68888985 444211 23332 2345589998 799999998754 4799999998864 333333 44579999
Q ss_pred CCc-eEEEEecCCCCcc--EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEEecc
Q 011970 236 PGI-MLLIFNRSSSHVP--LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSR 310 (474)
Q Consensus 236 pg~-~la~~s~~s~D~t--IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~~l~ 310 (474)
|++ +|+.... .++. |.+||+.+|++ ..+..+...+..++|+ |++.+|+..+ .++..+||++.. +...+.+
T Consensus 257 PDG~~La~~~~--~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 257 PDGSRLAFASS--KDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CCCCEEEEEEe--cCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 855 5665532 2444 55568777764 5566666667889998 6788888765 688999998753 2222333
Q ss_pred ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 311 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
++.. ....|||||+.|+..+ ++.+ +||+. |++......+. ..++.|+|||++|+.++.
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~---------- 391 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST---------- 391 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc----------
Confidence 3333 4567999999998887 6655 59985 77654333321 246789999999999875
Q ss_pred CCCeEEEEeC--CCCeEEEEecCCCC
Q 011970 389 SAGSINVSSI--LTGKCLAKINATNC 412 (474)
Q Consensus 389 ~DgtIklWdi--~tG~cl~tl~gH~~ 412 (474)
++.+++|++ .+|+++++|.+|..
T Consensus 392 -~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 392 -QGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred -CCCceEEEEEECCCCceEEccCCCC
Confidence 787887775 47999999998875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=183.17 Aligned_cols=297 Identities=13% Similarity=0.115 Sum_probs=196.4
Q ss_pred ccEEEEeeCCCeEEeeeccccc------eeeEeecCCCceEEEEEEeeCCCE-EEEEEeecCCCccceeeeEEEEeEecc
Q 011970 98 RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~------~l~~l~g~~~~~i~sv~fspdg~~-Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
..+||.+-+||-|.|+|...-+ .++... .|.++|..+.+-| |+. |+++| .| +++++||++.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsas----GD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSAS----GD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEcc----CC------ceeeeeeecc
Confidence 6899999999999999976422 245555 4889999999999 764 56654 55 7999999999
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEcCCcE----EEEEEcCCceEEEEec
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHV----QEIKISPGIMLLIFNR 245 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~~~~V----~~vafSpg~~la~~s~ 245 (474)
+++......++| .+.+.+++|.+-|--++++|+.|+.|+|||+. ++.-....-+..+ ..-. -|..-+.
T Consensus 132 s~l~G~~~~~GH--~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~---- 204 (720)
T KOG0321|consen 132 SRLVGGRLNLGH--TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLK---- 204 (720)
T ss_pred ceeecceeeccc--ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhh----
Confidence 998776545554 45566899998778899999999999999974 2210000000000 0000 0111100
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC-CCcEEEEECCCCceEE------e--cccc---C
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELME------V--SRTE---F 313 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~tIkIWDv~tg~~~~------~--l~~h---~ 313 (474)
+-++=|-...+ ++. ..|..|.| +|+..|++++. |++||+||++...+.. . +..| +
T Consensus 205 ----kr~~k~kA~s~----ti~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 205 ----KRIRKWKAASN----TIF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred ----ccccccccccC----cee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 11222222221 121 23555666 56778888775 9999999999866532 2 2223 2
Q ss_pred CceEEEEEcCC-CcEEEEEcCCcEEEEeCCC---cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 314 MTPSAFIFLYE-NQLFLTFRNRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 314 ~~v~sv~Fspd-g~llaS~sD~tIklWd~~G---~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
..+..++.-.- ..|+|+..|++|-.||+.+ ..+..+.||...- .-..-..|||+++|+||+.
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s---f~vks~lSpd~~~l~SgSs----------- 337 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS---FYVKSELSPDDCSLLSGSS----------- 337 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce---eeeeeecCCCCceEeccCC-----------
Confidence 23344444333 3555555599999999953 2567777776421 1123347999999999876
Q ss_pred CCeEEEEeCCCCe-EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCC
Q 011970 390 AGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHG 467 (474)
Q Consensus 390 DgtIklWdi~tG~-cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~Dg 467 (474)
|....||.+.+-+ -+..|.||+- .|++|.+.|---. +|++++|.
T Consensus 338 d~~ayiw~vs~~e~~~~~l~Ght~----------------------------------eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 338 DEQAYIWVVSSPEAPPALLLGHTR----------------------------------EVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcceeeeeecCccCChhhhhCcce----------------------------------EEEEEeeccccCCCceeeccCc
Confidence 9999999997644 4677888884 7999999764322 56669999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
++++|++
T Consensus 384 ~~kiW~l 390 (720)
T KOG0321|consen 384 RVKIWRL 390 (720)
T ss_pred ceEEEec
Confidence 9999974
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=166.34 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=183.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccceeeeccccCceEEEEeCCC-Ce
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVN-GK 199 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~lf~~~~~~~~~~V~Fs~~n-Gk 199 (474)
++.-.|.+.|.+|.|.+-|+.+||+| -| ++++|||...+. ..-+- -|. .|-+.+..|.+-+|. ||
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCS----sD------q~vkI~d~~~~s~~W~~Ts-~Wr-ah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCS----SD------QTVKIWDSTSDSGTWSCTS-SWR-AHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred ccccCCcceeeeeeecccCceeeecc----CC------CcEEEEeccCCCCceEEee-eEE-ecCCcEEEEEecCccccc
Confidence 55556889999999999999999987 34 689999974333 21111 111 133455577776554 99
Q ss_pred EEEEecCCCcEEEeecC--C----Ce---EEEEEcC--CcEEEEEEcC---CceEEEEecCCCCccEEEEecCCCe----
Q 011970 200 VLTYSAQDSIYKVFDLK--N----YT---MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT---- 261 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~--t----g~---~l~tl~~--~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~---- 261 (474)
++|++|.|+|++||.-. + |. ...+|.+ ..|.+|.|.| |-+||+. +.|+++||+...+--
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCcccccc
Confidence 99999999999999741 1 11 3456654 5799999998 7788776 568999998655422
Q ss_pred --EEEEEe-------ecCcceeEEEEEec--CCCeEEEEeCC-----CcEEEEECC-CC-ceE--EeccccCCceEEEEE
Q 011970 262 --VLKVFY-------HLLHRNKKVDFIEQ--FNEKLLVKQEN-----ENLQILDVR-NA-ELM--EVSRTEFMTPSAFIF 321 (474)
Q Consensus 262 --~L~tl~-------~h~~~v~~V~F~~~--~~~~ll~~~~D-----~tIkIWDv~-tg-~~~--~~l~~h~~~v~sv~F 321 (474)
+...+. .+..+..+|.+++. ....|++|+.+ +.++||.-. ++ ++. ..|.+|...|++++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 222232 23345677887521 12355555533 489999744 34 444 358899999999999
Q ss_pred cCC----CcEEEEEc-CCcEEEEeCCC---------------------cEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 322 LYE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 322 spd----g~llaS~s-D~tIklWd~~G---------------------~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|..|+|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSS 305 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEee
Confidence 984 57899999 99 99999763 235678888865 899999999999999
Q ss_pred EecCCCccccccCCCCeEEEEeCC---CCeEEEEecCCCC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNC 412 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gH~~ 412 (474)
.+. ||+||||... .-+|+..+++...
T Consensus 306 tGd-----------DG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 306 TGD-----------DGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred cCC-----------CceeeehhhhhhhhheeeeEEeccCC
Confidence 765 9999999642 3578888877653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=195.43 Aligned_cols=192 Identities=12% Similarity=0.186 Sum_probs=159.7
Q ss_pred EEEEc--CCceEEEEecCCCCccEEEEecCC---CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce
Q 011970 231 EIKIS--PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (474)
Q Consensus 231 ~vafS--pg~~la~~s~~s~D~tIkLWdi~t---G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~ 305 (474)
+|+++ ..+.||+++. -+.|-+||+.- -+.|..|+.|...+.+++|++.....|++||.|++||+||++..+-
T Consensus 92 DVkW~~~~~NlIAT~s~---nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCST---NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hcccccchhhhheeecC---CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 35555 3667787744 47899999976 5677889999999999999977778888899999999999999999
Q ss_pred EEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 011970 306 MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~ 381 (474)
..++.+....|+.|.|+| ++..|+++. .|.+++||++ ..|...|..|.+. |..+-++|++.+||+|+.
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR--- 240 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR--- 240 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC---
Confidence 999999999999999996 678899988 8899999995 7789999999998 688999999999999865
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-E
Q 011970 382 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-I 460 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-L 460 (474)
|++|||||..+++.-..+.-|+. ..|..|.|=|+.+. |
T Consensus 241 --------DK~vkiWd~t~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 241 --------DKMVKIWDMTDSRAKPKHTINTI---------------------------------APVGRVKWRPARSYHL 279 (839)
T ss_pred --------CccEEEEeccCCCccceeEEeec---------------------------------ceeeeeeeccCccchh
Confidence 99999999865543222222331 17899999999976 7
Q ss_pred EEEc--CCCcEEEccC
Q 011970 461 YTGN--RHGLVHVWSN 474 (474)
Q Consensus 461 aSgs--~DgtVklWd~ 474 (474)
||.+ .|-.|+|||+
T Consensus 280 Atcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDV 295 (839)
T ss_pred hhhhccccceEEEEee
Confidence 8777 5888999985
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=171.22 Aligned_cols=280 Identities=9% Similarity=0.096 Sum_probs=212.8
Q ss_pred cccEEEEEee--ccEEEEeeCCCeEEeeecc--ccceeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dgtiklW~~~--tg~~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~ 162 (474)
-+.|.+|.|- .++|.++..||+++||.+. ++..|..++. -.-+|.+..|.|+|+ .+++++ -. +-
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~----rr------ky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSG----RR------KY 281 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecc----cc------eE
Confidence 3458888887 8999999999999999865 4557777776 457899999999999 555533 44 67
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIML 240 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~l 240 (474)
...||+.++|..+=-++.+.+ .......+.| +++++||..+..|-|-|=..+|++++.+++ .+.|.++.|| ++.+|
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 889999999985533444443 2233456777 799999999999999999999999999998 4679999999 56666
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEEEeCCCcEEEEECCC------CceEEecccc
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRN------AELMEVSRTE 312 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~~~~D~tIkIWDv~t------g~~~~~l~~h 312 (474)
+++ ++++.|-+||+..-.|++.|... +.+ .+++-+ +.+.++++|+.-|-|.|||..+ .+.+.++..-
T Consensus 360 ~~~---~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 360 LAS---GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred EEE---cCCceEEEEecCCcceEEEEeec-Cccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 665 45789999999999999999843 333 444433 6677888889999999999654 2344444444
Q ss_pred CCceEEEEEcCCCcEEEEEc---CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s---D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.-.|+++.|+||+|+||-+| +..+||=.+ .-..-..|.-....+ ..|.+++|||.|-+||-|-.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v--g~vtc~aFSP~sG~lAvGNe---------- 502 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV--GHVTCMAFSPNSGYLAVGNE---------- 502 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcc--cceEEEEecCCCceEEeecC----------
Confidence 45789999999999999876 779998886 333333333222111 12789999999999999876
Q ss_pred CCCeEEEEeC
Q 011970 389 SAGSINVSSI 398 (474)
Q Consensus 389 ~DgtIklWdi 398 (474)
+|.+.||.+
T Consensus 503 -~grv~l~kL 511 (514)
T KOG2055|consen 503 -AGRVHLFKL 511 (514)
T ss_pred -CCceeeEee
Confidence 899999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-18 Score=177.45 Aligned_cols=233 Identities=11% Similarity=0.062 Sum_probs=162.5
Q ss_pred CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc
Q 011970 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~ 186 (474)
+..+.+||.. |....+|.. +.+.+.++.|||||+.|+.+|... .+ .++.+|++.+|+.. ..... ..
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~i~i~dl~tg~~~----~l~~~-~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFEN-KK------SQLVVHDLRSGARK----VVASF-RG 248 (429)
T ss_pred eEEEEEECCC-CCCceEecc-CCCccccceEcCCCCEEEEEEecC-CC------cEEEEEeCCCCceE----EEecC-CC
Confidence 5799999976 666777775 567899999999999999987432 33 57899999888741 11111 12
Q ss_pred CceEEEEeCCCCeEEEEec-CCCcEEEe--ecCCCeEEEEEc--CCcEEEEEEcCCce-EEEEecCCCCccEEEEecCC-
Q 011970 187 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIED- 259 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s-~D~tiKlW--dl~tg~~l~tl~--~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~t- 259 (474)
+...++|+ |||+.|++++ .|+.++|| |+.++++ ..+. ...+.+++|||++. |+..+ ..++..+||++..
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~ 324 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSAS 324 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECC
Confidence 23368998 7999888765 68877766 6666664 3343 34578899998654 44443 2346677876643
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
|.....+ ++.. ..++|+ |+++++++.+.++.+ +||+.+|++.....++ ...++.|+|||++|+.++ ++.+++
T Consensus 325 ~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~ 397 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKV 397 (429)
T ss_pred CCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceE
Confidence 2222223 3322 456675 678888887766555 5999999876554333 235678999999999998 898888
Q ss_pred EeC---CCcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 339 WNF---RGELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 339 Wd~---~G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
|++ +|++++.|.+|... ++..+|||-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 775 69999999988775 567888884
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=175.53 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=181.5
Q ss_pred cccccEEEEEee---ccEEEEeeCCCeEEeeeccc--ccee--------eEeecCCCceEEEEEEeeCCC-EEEEEEeec
Q 011970 86 MKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET--NRRI--------CFLNVSPDEVIRSLFYNKNND-SLITVSVYA 151 (474)
Q Consensus 86 ~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t--g~~l--------~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~ 151 (474)
+|...|..+..- -.+||+.+.++.+.+||..+ ++.. ..|.|++.+ =++|.||++-+ .|++ +
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsWn~~~~g~Lls----~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSWNRQQEGTLLS----G 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-ccccccccccceeEee----c
Confidence 444444444443 67899999999999999764 2221 268885553 58899998865 4666 4
Q ss_pred CCCccceeeeEEEEeEeccCCC----CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--CeEEEEEc
Q 011970 152 SDNFSSLKCRSTKIEYIRRGKP----DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS 225 (474)
Q Consensus 152 s~d~s~Lk~~~~~iw~i~~G~~----~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--g~~l~tl~ 225 (474)
++| +++.+|||..... ..-...|. +|..-+..|+|.+-+..+++|++.|+.+.|||+.+ -++.++..
T Consensus 197 ~~d------~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 197 SDD------HTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred cCC------CcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 577 8999999954433 22223444 35556778999988999999999999999999985 33444443
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEEC
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDV 300 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv 300 (474)
...|++|+|+| +..++++ +|.|+||+|||+++= +++.+|++|...|+.|.|+ |..+.+|+ ++.|+.+.+||+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT--~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS-Ph~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILAT--GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS-PHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred ccCCceeEEEeCCCCCceEEe--ccCCCcEEEeechhcccCceeccCCCcceEEEEeC-CCCCceeEecccCCcEEEEec
Confidence 56899999998 4444443 366999999999863 5789999999999999998 55666666 579999999998
Q ss_pred CC-Cc-------------eEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCCcE
Q 011970 301 RN-AE-------------LMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 301 ~t-g~-------------~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G~l 345 (474)
.. |+ ++=+=.||...|..|.|.|.-. +++|.+ |+.++||.....+
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 75 22 2233478999999999998655 556667 9999999976443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=170.46 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=176.1
Q ss_pred ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCC
Q 011970 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~ 248 (474)
+.|+.+...+++. +|...+..++|+|-|.+.|||||.|.+|+||++.. +.|. .
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe--------------------~~l~-~----- 118 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE--------------------NGLT-R----- 118 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCC--------------------cccc-c-----
Confidence 5788888888877 47777778999999999999999999999999743 2111 0
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll 328 (474)
+- + +....|.||+.+|.-|++.|--..-|++++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 119 ~l--------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 119 DL--------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred Cc--------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 00 1 66788999999999999987666778888999999999999999888877 99999999999999999
Q ss_pred EEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC---CCeE
Q 011970 329 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKC 403 (474)
Q Consensus 329 aS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~---tG~c 403 (474)
+|.+ |+.|+|||.+ |+.+..-.+|.+.-+ .-+.|-.+|+ |++.+.+ .-++..|-|||-. +.--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k~----~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP----ARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCCc----ceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999995 999998888988532 3466888999 5554442 3458899999853 2333
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-EcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS-gs~DgtVklWd 473 (474)
+++|...+ .|.==+|+||-++||- |-.|+.||.+.
T Consensus 257 ~~elDtSn-----------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTSN-----------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccCC-----------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 45554433 5767899999999885 45799998764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=162.47 Aligned_cols=239 Identities=11% Similarity=0.137 Sum_probs=178.2
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
.|-+|.|+ |.+..|+.+|+||+++|+|+..-.++..+. +..+.+++|-|....+++ +-|+.||+.|+.+|+..+.
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45589999 566666667799999999998877666664 679999999998887776 5589999999999988766
Q ss_pred EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 342 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-- 342 (474)
.. |...+..|.++ +-.+.+++||+|++||+||.++..+..++.... .|.+. +-.|..|+.|. |+.|.+||++
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccCc-eEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 55 66889999998 456889999999999999999855544433222 45444 44455566655 9999999995
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEecCCCCCCCCcc
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKINATNCSPKVDD 418 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~gH~~~~~~~~ 418 (474)
.+..+.-+-.... .+++|++-|++.=.|.+|- ||.|-+=.+.+-++ -..|+.|...-++.
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~- 229 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT- 229 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeecccCCc-
Confidence 5544333322222 2799999998887887776 89888776666533 34678887411111
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+ =+|.+++|+|--+++|||+.||-|-+||.
T Consensus 230 ----------------~~~--------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 230 ----------------EII--------YPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ----------------eEE--------EEeceeEeccccceEEecCCCceEEEccC
Confidence 000 17999999999999999999999999983
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=163.74 Aligned_cols=275 Identities=11% Similarity=0.126 Sum_probs=203.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc---cceeeec-cccCce---------E--EEEe
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG---FALFESE-SLKWPG---------F--VEFD 194 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~---~~lf~~~-~~~~~~---------~--V~Fs 194 (474)
+...+.-|||||..|.+-| .| ...++|.++.--..+. ..+|... .+..+. . ..-+
T Consensus 50 nf~kgckWSPDGSciL~~s----ed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLS----ED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred hhhccceeCCCCceEEeec----cc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 3445567999999888755 44 4666666632221110 1122211 111110 0 1223
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----Cc---EEEEEEcCCceEEEEecCCCCccEEEEec-CCCeEE---
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KH---VQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTVL--- 263 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~---V~~vafSpg~~la~~s~~s~D~tIkLWdi-~tG~~L--- 263 (474)
.|+-.+.|+++.|.-|++||.-||++..+.+. +. -.+++|||++.-+.+ +.-.+||++|+ +.|.-.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa---GykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA---GYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee---cccceEEEeeccCCCCCCcch
Confidence 57888999999999999999999998877762 23 457999985554443 44578999999 666432
Q ss_pred EEEe----ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEE
Q 011970 264 KVFY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVA 337 (474)
Q Consensus 264 ~tl~----~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIk 337 (474)
.|+. +..+-+..++|+|-+...++.++...++-|+.-..+.++.++.||.+.|+-+.|-+||+.|.+|+ |-.|-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 2222 23456688999977666778899999999999999999999999999999999999999999997 88999
Q ss_pred EEeCC--CcEEEEeccCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCC
Q 011970 338 VWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNC 412 (474)
Q Consensus 338 lWd~~--G~ll~tl~gH~~~~~~~~v~svaf--SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~ 412 (474)
.||++ ++.|..|+.|..- .+ .-|.| -|+|++||||+. ||.|++||+.+ |..+..+..|++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~---TN-QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGD---TN-QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred EEeehhccchhhhhhhhccC---cc-ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccccc
Confidence 99995 8999999999763 12 34665 688999999876 99999999988 887777777775
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
-|..|+++|-=.++|++|..
T Consensus 342 ----------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 ----------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ----------------------------------cccceecCcccceeeeccCc
Confidence 78889999999999988753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=168.65 Aligned_cols=289 Identities=15% Similarity=0.159 Sum_probs=208.4
Q ss_pred cCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCC-CCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 126 VSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 126 g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~-~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
..+.+.|.+++|.|--. .|+.++ . |..+|-+|++...+ -..++.+|+. |...|..+.|+|.|-..+.+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~G---d------K~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVG---D------KGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecccCcceEEEEc---c------CCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheee
Confidence 35778899999999865 555443 1 23789999985333 3445667875 55667789999877777888
Q ss_pred ecCCCcEEEeecCCCe--EEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE-EEEEeecCcceeEEE
Q 011970 204 SAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV-LKVFYHLLHRNKKVD 277 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~--~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~-L~tl~~h~~~v~~V~ 277 (474)
+|.|||||+=|++++. .++++.+ .+..+..|+. ...++.+. .-+...+||+.++.- ..-+.-|...|.+|+
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee---cccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999999876 5667643 3567888884 55666552 234788999988654 555666777999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-----CcEEE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----GELVT 347 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-----G~ll~ 347 (474)
+.|.....|+++|.|+|.||||+++-.- +--...|...|.++-|||.|-.|+|-+ |.+|+|||.. -+.+.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 9998889999999999999999997322 122345888999999999888899998 9999999973 22233
Q ss_pred Eec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCC
Q 011970 348 SFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 348 tl~---gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
++. .|.-|.. .-..+|.||-.+|+.|-. -.-|-|.|-..||.+..|-+-..
T Consensus 410 ~I~Hn~~t~RwlT---~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~------------ 463 (498)
T KOG4328|consen 410 TIPHNNRTGRWLT---PFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES------------ 463 (498)
T ss_pred eeeccCccccccc---chhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc------------
Confidence 332 1112321 245779999999999876 45599999777776776633221
Q ss_pred CCccccccccccccccccccccCEEE-EEEcCCCCEEEEE-cCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTG-NRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~s-lafSpDg~~LaSg-s~DgtVklWd~ 474 (474)
+ .|.+ ..|+|-+..|++| +..|.|.||-+
T Consensus 464 --------------~-------tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 --------------S-------TIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred --------------c-------ccccceeecccccceeccCCccceEEEEec
Confidence 0 2222 5799999955555 57899999854
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=161.45 Aligned_cols=284 Identities=14% Similarity=0.170 Sum_probs=205.6
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
++-+||.-.+ -.++-||+.|.+||.+-+ | ..+-|||.-+-..-. .++ .|...+-++++| +||
T Consensus 16 el~~tld~~~---a~~~~Fs~~G~~lAvGc~----n------G~vvI~D~~T~~iar---~ls-aH~~pi~sl~WS-~dg 77 (405)
T KOG1273|consen 16 ELTHTLDNPL---AECCQFSRWGDYLAVGCA----N------GRVVIYDFDTFRIAR---MLS-AHVRPITSLCWS-RDG 77 (405)
T ss_pred hhceeccCCc---cceEEeccCcceeeeecc----C------CcEEEEEccccchhh---hhh-ccccceeEEEec-CCC
Confidence 3445665323 679999999999998654 4 578899986655322 333 367778899998 799
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCC--eEEEEEe-ecCcc
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY-HLLHR 272 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~-~h~~~ 272 (474)
+.|.++|.|..|++||+..|.+++.+. ...||.+.|+| ..+.++.--. ..-.+-++.++ .+|-.=. +.+..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~---~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIME---ESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEec---CCcEEEEecCCceeeccCCCcccccc
Confidence 999999999999999999999999887 67899999998 3333322111 11223333222 2221110 11111
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeCC-----C--
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 343 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~~-----G-- 343 (474)
+-+--|..+.|+++++|-..|-+-++|..|-+|+..++-.. ..|..+.|+-.|+.|+.-. |++||.++.+ |
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 21111223668899999999999999999999998766544 6888999999999999987 9999999963 1
Q ss_pred -cE--EE---EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 344 -EL--VT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 344 -~l--l~---tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+. .+ .+-.-..| +.+.||.||.|+..++. ....+.||.-.+|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-----
Confidence 21 11 22234456 68999999999998764 478999999999999999988663
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+..-.|.++|-...|+|- ..|+|.+|.
T Consensus 294 ----------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 ----------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred ----------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 134457899999999988 788999995
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-17 Score=160.90 Aligned_cols=226 Identities=15% Similarity=0.198 Sum_probs=168.1
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCeEEEEEe---ecC
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLL 270 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~~L~tl~---~h~ 270 (474)
..+||.++.-|.|||-|+.+++|...+ ++..|.+|+|.|.. .++++ |.|.+||||||+++.|+..|- ||.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccCCeEEEEeccccccc
Confidence 458999999999999999999987655 57789999999844 55554 668999999999999999986 799
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE---Eec---c------------cc----------CCceEEEEEc
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---EVS---R------------TE----------FMTPSAFIFL 322 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---~~l---~------------~h----------~~~v~sv~Fs 322 (474)
++|.+|+|+ .+++++++++.|.+|++|++...+.. +.. . .| ...|-.+-|
T Consensus 182 deVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw- 259 (385)
T KOG1034|consen 182 DEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW- 259 (385)
T ss_pred CcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH-
Confidence 999999998 67899999999999999999854422 111 0 11 111111111
Q ss_pred CCCcEEEEEc-CCcEEEEeC-C-CcE---------EEEeccCCCCcCCCCeeEEEEC--CCCCEEEEEecCCCccccccC
Q 011970 323 YENQLFLTFR-NRTVAVWNF-R-GEL---------VTSFEDHLLWHPDCNTNNIYIT--SDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~-~-G~l---------l~tl~gH~~~~~~~~v~svafS--pDg~~LaS~s~~~~~~~~~~s 388 (474)
-|.+++|=| ++.|-.|.. + +|- -.|.-++-. ++.|.+|-|-|+ |-++.||.|..
T Consensus 260 -~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq---------- 327 (385)
T KOG1034|consen 260 -FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ---------- 327 (385)
T ss_pred -HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC----------
Confidence 278899988 999999997 3 332 223333333 466778877665 55899998765
Q ss_pred CCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 389 SAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 389 ~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
-|+|.+||+..-+. ..||.-+.. + ..|...+||.||.+|+--..|
T Consensus 328 -~g~v~vwdL~~~ep~~~ttl~~s~~-----------~---------------------~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 328 -SGKVYVWDLDNNEPPKCTTLTHSKS-----------G---------------------STVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred -CCcEEEEECCCCCCccCceEEeccc-----------c---------------------ceeeeeeecccCcEEEEEeCC
Confidence 89999999976543 223322221 1 279999999999999999999
Q ss_pred CcEEEcc
Q 011970 467 GLVHVWS 473 (474)
Q Consensus 467 gtVklWd 473 (474)
++|--||
T Consensus 375 ~~Vwrwd 381 (385)
T KOG1034|consen 375 GTVWRWD 381 (385)
T ss_pred CcEEEEE
Confidence 9998887
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=168.16 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=163.3
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
|..+.|+=|.-|.|+|||+. ..++.++. |+.... + ..-+.|.++++|...=+.+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~--~~l~~l~~---------~~~~~~-------~--------s~~~Pl~t~~ghk~EGy~L 217 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLA--PHLNALSE---------PGLEVK-------D--------SEFRPLFTFNGHKGEGYGL 217 (440)
T ss_pred CcceeeeecccCcEEEEEch--hhhhhhcC---------cccccc-------c--------cccCceEEecccCccceee
Confidence 67788888899999999974 34444432 222110 0 1236788999998888999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceE---EeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-C---cEEE
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELM---EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVT 347 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G---~ll~ 347 (474)
+|+|.-.+.|++|---+.|++|...+|.-. .-+.+|+..|..+.+|| +...|||+| |++|+|||++ | -|+.
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 999866788888877889999999998754 23678999999999997 677888888 9999999996 7 4666
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEecCCCCCCCCccccCCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
+ +.|..- ||-|.|+.+--+||||+. ||+++|||+.+ |+.+++++-|..
T Consensus 298 ~-kAh~sD-----VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~------------ 348 (440)
T KOG0302|consen 298 T-KAHNSD-----VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA------------ 348 (440)
T ss_pred e-eccCCc-----eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC------------
Confidence 5 788774 789999999889999876 99999999854 788999999986
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|++|.|+|.- ..|+.++.|.+|.|||+
T Consensus 349 ----------------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 ----------------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ----------------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 89999999854 56888899999999985
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=168.87 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=208.8
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeecccc-c--e---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCcc
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETN-R--R---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 156 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg-~--~---l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s 156 (474)
|.|..-|.++.++ ...++++. .|-||+||+..- . . |--|| .++-||+.-+.|||.+||+++ +-
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGG----ea-- 486 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGG----EA-- 486 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEecc----cc--
Confidence 5678889999999 78888886 578999998631 1 1 22344 467899999999999999954 44
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEE
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKI 234 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vaf 234 (474)
-++.|||+..-.+.-...|-....-.+ .++.+ ||.|+.-++-.||.|.||||.+-.++..|++ +.+.+|.+
T Consensus 487 ----stlsiWDLAapTprikaeltssapaCy--ALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 487 ----STLSIWDLAAPTPRIKAELTSSAPACY--ALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ----ceeeeeeccCCCcchhhhcCCcchhhh--hhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 678899986655410000111111111 47887 7999999999999999999999999999975 57999999
Q ss_pred cC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 235 SP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 235 Sp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
|+ |-.|-++ +-|.+||-||+++|..++... ....|+++-.. |.++.+++|=+++++-|......+ ...+.-|.
T Consensus 560 s~dGtklWTG---GlDntvRcWDlregrqlqqhd-F~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~-kyqlhlhe 633 (705)
T KOG0639|consen 560 SKDGTKLWTG---GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHE 633 (705)
T ss_pred cCCCceeecC---CCccceeehhhhhhhhhhhhh-hhhhheecccC-CCccceeeecccCcEEEEecCCcc-ceeecccc
Confidence 96 6666665 668999999999998765432 13578888876 668899999999999998855444 34456688
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.-|-++.|.|-|+.|+|.+ |+-+-.|..- |.-+-..+..+. |.++.+|.|.+||++||. |+
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~Ss------VlsCDIS~ddkyIVTGSG-----------dk 696 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS------VLSCDISFDDKYIVTGSG-----------DK 696 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCc------ceeeeeccCceEEEecCC-----------Cc
Confidence 8999999999999999998 9999999984 876654444332 789999999999999976 76
Q ss_pred eEEEEeC
Q 011970 392 SINVSSI 398 (474)
Q Consensus 392 tIklWdi 398 (474)
..-++.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 6666553
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=168.17 Aligned_cols=227 Identities=12% Similarity=0.142 Sum_probs=165.7
Q ss_pred CCeEEEEecCCCcEEEeecCCC---eEEEEE--------------------cCCcEEEEEEcC--CceEEEEecCCCCcc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNY---TMLYSI--------------------SDKHVQEIKISP--GIMLLIFNRSSSHVP 251 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg---~~l~tl--------------------~~~~V~~vafSp--g~~la~~s~~s~D~t 251 (474)
-|.++|-|..|.+|-||||.=- .+..+| |.+.|.++++.- -..||++ |.|+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg---saD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG---SADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec---CCCce
Confidence 4789999999999999998521 121222 112355677763 4566654 66999
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE-EEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLT 330 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l-laS 330 (474)
|+|||+.+|+|-+++.+|...|.+++|.+..++.||+|+.|++++|.|++.-.+...--.-...|..+++.|.... +++
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999888899999999999999999953222110011235777888765543 444
Q ss_pred Ec-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 331 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 331 ~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+. ||+|+-.|.+ |+++.++..|... |.+|.+++.-. +|++++ .|+++|||++.- .--..
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s-----------~d~~Vklw~~~~-~~~~~ 410 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAS-----------TDKVVKLWKFDV-DSPKS 410 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeecc-----------ccceEEEEeecC-CCCcc
Confidence 55 9999999995 9999999999987 67888888654 555554 499999999742 22222
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcCCCcEEEccC
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~DgtVklWd~ 474 (474)
...|.- .+....+.++.|+-- +||.|+..+.+||||+
T Consensus 411 v~~~~~-------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 411 VKEHSF-------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccccc-------------------------------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 233331 112566778888765 4888889999999985
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=161.28 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=175.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCC--------CeEEE----EE---cCCcEEEEEEc-------CCceEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTMLY----SI---SDKHVQEIKIS-------PGIMLLIFNRSS 247 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------g~~l~----tl---~~~~V~~vafS-------pg~~la~~s~~s 247 (474)
...+| |||.-|.+-+.|.++.+|+|.. +-... ++ .+..|.+..+= |..-|... .+
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ss 130 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SS 130 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--cc
Confidence 35666 8999999999999999999752 11111 11 13455543332 44333333 25
Q ss_pred CCccEEEEecCCCeEEEEEe--ecCcce---eEEEEEecCCCeEEEEeCCCcEEEEEC-CCCceEEe---c-c---ccCC
Q 011970 248 SHVPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELMEV---S-R---TEFM 314 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~--~h~~~v---~~V~F~~~~~~~ll~~~~D~tIkIWDv-~tg~~~~~---l-~---~h~~ 314 (474)
.|.||+|||..||++..++. .|+..+ .+++|+ |||++|.+| ...+||++|+ +.|.--.+ + . +...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 68999999999999999887 355544 789998 677776655 8899999999 66753222 1 1 2356
Q ss_pred ceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 315 TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 315 ~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
-++.++|+|- ..++|.++ -+++-|++-. ++.++.|-||.+- |.-+.|.+||+.|.||+. -|-
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaR----------k~d 273 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGAR----------KDD 273 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeeccccc----------CCC
Confidence 7788999984 55899999 8899999985 8899999999987 689999999999999986 378
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 392 SINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 392 tIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
.|-.|||. .++.+..|..|..-. =+.|. ....|+|++||||+.||.|+
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~T------------------------------NQRI~-FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDT------------------------------NQRIL-FDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCc------------------------------cceEE-EecCCCCceeeccCCCccEE
Confidence 89999995 467788998887410 12443 56689999999999999999
Q ss_pred EccC
Q 011970 471 VWSN 474 (474)
Q Consensus 471 lWd~ 474 (474)
+||+
T Consensus 323 vwdl 326 (406)
T KOG2919|consen 323 VWDL 326 (406)
T ss_pred EEec
Confidence 9985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=170.17 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=187.0
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---E--EEEEcCC---cEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---M--LYSISDK---HVQEIK 233 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~--l~tl~~~---~V~~va 233 (474)
+++|||...-.....+.-.+.++. +.++.+...|--+.|+.+.|..+++|. +.|+ . +..+.++ -|..+.
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhh
Confidence 688999854333221111222211 446677644445677888999999997 5555 1 1122222 245555
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE- 312 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h- 312 (474)
+| +..++ ++..++|||||++.--|.+.+++|+..|..|.+.. .+++|++.+..|-|-|-.+.++....++...
T Consensus 90 ~S---~y~~s--gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QS---LYEIS--GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cc---eeeec--cCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 55 44444 34468999999998778889999999999999974 5799999999999999999999887776654
Q ss_pred CCceEEEEEcCCCcEEEE-Ec-CCcEEEEeCCCc--EEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccc
Q 011970 313 FMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWME 387 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS-~s-D~tIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~ 387 (474)
.+.|+-+.|||-.+.+++ ++ ||+|.|||++|. ...-.+.|..+ ...|+|+|-+ .+|+|-+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~--------- 229 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY--------- 229 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc---------
Confidence 456668899998887776 46 999999999865 45566788877 5789999965 56666554
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 388 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 388 s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
|+.|.|+|+...+...+|.... +.++|+|+|+|-+|+-|+..|
T Consensus 230 --Dkki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 230 --DKKINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred --cceEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCCc
Confidence 9999999998777766665433 788999999999999999999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
.|-.+|+
T Consensus 273 ~~i~YD~ 279 (673)
T KOG4378|consen 273 ELIAYDM 279 (673)
T ss_pred eEEEEec
Confidence 9988875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=166.18 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=141.7
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEE-
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVL- 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L- 263 (474)
.++++.--.-.+|||||.|.||||||+.+|+|..++. ++.|++++|.| ...|+++ +.|++|+|-|.+.-.+.
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccC
Confidence 3455543334699999999999999999999999886 57899999997 6677765 67999999998742221
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd 340 (474)
+.++ -.+.|-.|++.+...-.++++..||+++=.|+|+ |+++-++..|...|+.+.+++.. .+++|++ |++||||+
T Consensus 324 ~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 324 KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 1111 1256788888754445667778999999999998 59999999999999999998654 4577778 99999999
Q ss_pred CCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 341 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 341 ~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+.+.--+.-..|..-. ....+.++-|+--.+... +|..+-++|||+.++..+
T Consensus 403 ~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~----------GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAF----------GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccc--cceeecccCCCcceEEEe----------cCccceEEEeecccChhH
Confidence 9533222222333211 012334455554433333 334678999999876544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=157.92 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=192.2
Q ss_pred CCCCcccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecC
Q 011970 74 PKGHCPFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS 152 (474)
Q Consensus 74 ~~~~~~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s 152 (474)
+|....+ +++ |.+.|.++.|- +++|.+|...|.+++|.++|.+.++.+.+.+...|..+-.-|++. |.| .+
T Consensus 3 pPdP~fv-LRp--~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~t----qg 74 (323)
T KOG0322|consen 3 PPDPFFV-LRP--HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDT----QG 74 (323)
T ss_pred CCCCeeE-ecc--ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhh----cC
Confidence 3444444 566 88899999988 999999999999999999999999999987888999999999855 554 23
Q ss_pred CCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEc---CCc
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKH 228 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~---~~~ 228 (474)
.| -.+-+|+|.-+.+.. ...- -+++.+|..|| |...+. ...|-+. .++-.+..+ ...
T Consensus 75 Rd------~~L~lw~ia~s~~i~---i~Si-~~nslgFCrfS------l~~~~k---~~eqll~yp~rgsde~h~~D~g~ 135 (323)
T KOG0322|consen 75 RD------PLLILWTIAYSAFIS---IHSI-VVNSLGFCRFS------LVKKPK---NSEQLLEYPSRGSDETHKQDGGD 135 (323)
T ss_pred CC------ceEEEEEccCcceEE---Eeee-eccccccccce------eccCCC---cchhheecCCcccchhhhhccCc
Confidence 44 466678876655311 1111 12333344443 111111 1111110 000000011 011
Q ss_pred EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE--
Q 011970 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-- 306 (474)
Q Consensus 229 V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-- 306 (474)
-..|.+-|+.... +.|..+- .++.|-+-.--.|++|-+++.+-+||+.++..+
T Consensus 136 ~tqv~i~dd~~~~----------------Klgsvmc---------~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 136 TTQVQIADDSERS----------------KLGSVMC---------QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred cceeEccCchhcc----------------ccCceee---------eeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 1111221111000 0111100 111111100013455679999999999997322
Q ss_pred --------EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC---CcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 307 --------EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 307 --------~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
.-...|...|.++.|-+.-..=++++ +..+-.|+++ |.|... .-|... +|.|+.|.+-|||+++|
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lk--npGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLK--NPGVSGVRIRPDGKILA 267 (323)
T ss_pred cccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEec--CCCccceEEccCCcEEe
Confidence 12356888999998876655556777 7778899983 554221 112222 24488999999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
+++. |+.||+++..|++.|+.|+-|.. .|.+|||+
T Consensus 268 TAGW-----------D~RiRVyswrtl~pLAVLkyHsa----------------------------------gvn~vAfs 302 (323)
T KOG0322|consen 268 TAGW-----------DHRIRVYSWRTLNPLAVLKYHSA----------------------------------GVNAVAFS 302 (323)
T ss_pred eccc-----------CCcEEEEEeccCCchhhhhhhhc----------------------------------ceeEEEeC
Confidence 9866 99999999999999999999986 89999999
Q ss_pred CCCCEEEEEcCCCcEEEccC
Q 011970 455 EERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd~ 474 (474)
||-..+|.||.|+.|-||+.
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999973
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=173.48 Aligned_cols=305 Identities=12% Similarity=0.121 Sum_probs=207.5
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccC
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~ 187 (474)
.+|..||.. ++++ .+.+-+.+-|+|.-..||++ .++ -.|.+||...|++..+|..-.. ....
T Consensus 1050 ~~i~~W~~~------~~~~-n~~~pk~~~~hpf~p~i~~a----d~r------~~i~vwd~e~~~~l~~F~n~~~-~~t~ 1111 (1387)
T KOG1517|consen 1050 NPIGNWDQK------FMTG-NNQPPKTLKFHPFEPQIAAA----DDR------ERIRVWDWEKGRLLNGFDNGAF-PDTR 1111 (1387)
T ss_pred ccccchHHH------HHhc-CCCCCceeeecCCCceeEEc----CCc------ceEEEEecccCceeccccCCCC-CCCc
Confidence 345666644 3343 33456788999999988873 234 5889999999998554332111 1223
Q ss_pred ceEEEEe-CCCCeEEEEecCCCcEEEeec-CCC----eEEEEE---cC------CcEEEEEEcC-CceEEEEecCCCCcc
Q 011970 188 PGFVEFD-DVNGKVLTYSAQDSIYKVFDL-KNY----TMLYSI---SD------KHVQEIKISP-GIMLLIFNRSSSHVP 251 (474)
Q Consensus 188 ~~~V~Fs-~~nGk~LaS~s~D~tiKlWdl-~tg----~~l~tl---~~------~~V~~vafSp-g~~la~~s~~s~D~t 251 (474)
|-.++|- ..|-.+|.+|+.||.||||+- .++ +++... ++ +.=.=+.+-. .|.|+++ ++-..
T Consensus 1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~r~ 1188 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDVRS 1188 (1387)
T ss_pred cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCeeE
Confidence 3345552 123457889999999999962 222 233222 21 1111133332 5666665 33578
Q ss_pred EEEEecCCCeEEEEEee-cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---eEEeccccCCc--eEEEEEcCCC
Q 011970 252 LKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLYEN 325 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~-h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---~~~~l~~h~~~--v~sv~Fspdg 325 (474)
|+|||.+.-++.+.+.. -..-+.++.-....+..+++|-.||.||++|.+... .+.+.+.|+.. |.-+.|-+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999998888887763 223345555443445677778899999999999754 45678889988 8888888766
Q ss_pred cE-EEEEc-CCcEEEEeCCC-cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 326 QL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 326 ~l-laS~s-D~tIklWd~~G-~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
-- |+|++ ||.|++||+++ ...+.+.--..|.++..+..+..+++-.+||||+ .+.|+|||+ .|+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs------------~q~ikIy~~-~G~ 1335 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS------------AQLIKIYSL-SGE 1335 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC------------cceEEEEec-Chh
Confidence 55 88998 99999999986 3344444334344444467899999999999986 489999996 799
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+..++.+..+-. +.-..+.+|+|+|-.-.||.|+.|.+|-|+.
T Consensus 1336 ~l~~~k~n~~F~~---------------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMG---------------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred hhcccccCccccc---------------------------CcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 9999987654211 1111678999999999999999999998874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=161.90 Aligned_cols=276 Identities=10% Similarity=0.094 Sum_probs=198.9
Q ss_pred EEEeeCCCeEEeeecccccee-eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccce
Q 011970 101 VFALAHSGVCAAFSRETNRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l-~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~l 179 (474)
|-.+|..-++||||...-... |++.-...-.+.++-|+..+. |+++|. +.| ..+++|. +.|+. .++|+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 334455668999997643222 222222223489999999887 777763 445 6888887 77773 33444
Q ss_pred eeeccccC---ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEc-CCceEEEEecCCCCccEE
Q 011970 180 FESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 180 f~~~~~~~---~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafS-pg~~la~~s~~s~D~tIk 253 (474)
.+...... +....|| .++.+|++.++|||||++.-.|.+.+.+ ..|..|.+. .+-.||+.+- + +.|-
T Consensus 74 ~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~-g--Gdii 146 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD-G--GDII 146 (673)
T ss_pred eeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc-C--CcEE
Confidence 43311111 2234554 7999999999999999985446666654 579999999 5888887743 3 5688
Q ss_pred EEecCCCeEEEEEeec-CcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceE-EeccccCCceEEEEEcCCCc-EEE
Q 011970 254 ILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQ-LFL 329 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h-~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~-lla 329 (474)
|-++.|++--.+|.+. ...|+=+.|+ ++...||+ .++||+|.|||+.....+ ..+..|..+...|+|+|-+. +|+
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 9999999988899854 4566788988 45566665 689999999999876654 45778999999999998665 455
Q ss_pred EEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAK 406 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~t 406 (474)
|-+ |..|-++|.. -....+|.-.. ...+|+|+|+|.+|+.|+. .|.|--+|+.. -+.+++
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAV 288 (673)
T ss_pred EecccceEEEeecccccccceeeecC------CcceeeecCCceEEEeecC-----------CceEEEEecccCCCCceE
Confidence 667 9999999995 44454554221 1478999999999998865 89999999954 467999
Q ss_pred ecCCCC
Q 011970 407 INATNC 412 (474)
Q Consensus 407 l~gH~~ 412 (474)
+.+|..
T Consensus 289 ~sah~~ 294 (673)
T KOG4378|consen 289 RSAHDA 294 (673)
T ss_pred eeeccc
Confidence 999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=161.38 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=188.8
Q ss_pred ccEEEEeeCCCeEEeeeccccc----eeeEeecCCCceEEEEEEeeCCCE-EEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNR----RICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~----~l~~l~g~~~~~i~sv~fspdg~~-Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
..+||+|+..|+|-+||..+.+ .+.-+++ |...|.++-|+|.+.. +.+.| .| .++|+-|+..+.
T Consensus 200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS----yD------GtiR~~D~~~~i 268 (498)
T KOG4328|consen 200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS----YD------GTIRLQDFEGNI 268 (498)
T ss_pred ceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec----cC------ceeeeeeecchh
Confidence 4799999999999999995333 3455665 7789999999999764 44444 55 699999988877
Q ss_pred CCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE---EEEEcCCcEEEEEEcC--CceEEEEecC
Q 011970 173 PDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKHVQEIKISP--GIMLLIFNRS 246 (474)
Q Consensus 173 ~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~---l~tl~~~~V~~vafSp--g~~la~~s~~ 246 (474)
... +... ....|.-...|+..++.+|+ +..=|..-+||+.++.- ...++...|.+|+++| ...||++
T Consensus 269 ~e~---v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~--- 341 (498)
T KOG4328|consen 269 SEE---VLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA--- 341 (498)
T ss_pred hHH---HhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec---
Confidence 522 1111 11234445677755555555 44444899999987553 3356677999999999 4556654
Q ss_pred CCCccEEEEecCC--CeE---EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC----CCceEEeccc---cCC
Q 011970 247 SSHVPLKILSIED--GTV---LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR----NAELMEVSRT---EFM 314 (474)
Q Consensus 247 s~D~tIkLWdi~t--G~~---L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~----tg~~~~~l~~---h~~ 314 (474)
|-|+|+||||++. ++. |.++. |...|.++.|+ |.++.||+.+.|.+|||||.. .-+.+.+..+ +..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~-HrrsV~sAyFS-Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLP-HRRSVNSAYFS-PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceeccc-ccceeeeeEEc-CCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 6799999999874 222 44444 77899999998 677889999999999999983 3333322222 223
Q ss_pred ceE--EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCC-CcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 315 TPS--AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 315 ~v~--sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~-~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|.+ ..+|-||-.+++.+. -+-|-|.|-+ |+++..|-+-.. .++ .-+.|+|=+..+|+|+. .
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~----~vn~~HP~~~~~~aG~~----------s 485 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP----SVNEFHPMRDTLAAGGN----------S 485 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc----cceeecccccceeccCC----------c
Confidence 333 457999999999999 7789999997 777888766554 221 23689999998888865 3
Q ss_pred CCeEEEEe
Q 011970 390 AGSINVSS 397 (474)
Q Consensus 390 DgtIklWd 397 (474)
-|.|.||-
T Consensus 486 ~Gki~vft 493 (498)
T KOG4328|consen 486 SGKIYVFT 493 (498)
T ss_pred cceEEEEe
Confidence 67888875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-15 Score=157.66 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=160.4
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.+||.+ |...+.+.. +.+.+.+..|||||+.|+.++... .+ ..+.++++..|+.. .+... ....
T Consensus 180 ~l~~~d~d-g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~-g~------~~i~i~dl~~G~~~---~l~~~--~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFES-GR------SALVIQTLANGAVR---QVASF--PRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EccCC--CCCc
Confidence 68888876 555555554 457899999999999999876432 33 47888998888742 12221 1223
Q ss_pred eEEEEeCCCCeEEEEe-cCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEE
Q 011970 189 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~-s~D~--tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
..++|| |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|||++. |+..+.......|.++|+.+|+..
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 468998 799988865 3344 58899999987654333 34678899998554 544432111123555578777653
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-C--CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCc---E
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 336 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~--D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~t---I 336 (474)
.+..+...+..+.|+ |+|.+++..+ . ...|.+||+.+++.......+ ...+..|+|||+.|+.++ |+. +
T Consensus 325 -~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 325 -RITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -EeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 444333455677887 6788887754 3 346889999999866544332 234677999999999988 664 6
Q ss_pred EEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 337 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 337 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.+|+++|+..+.+.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888889999999888765 45677776
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=166.09 Aligned_cols=238 Identities=12% Similarity=0.156 Sum_probs=185.2
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc---eEEEEecCC-----------
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI---MLLIFNRSS----------- 247 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~---~la~~s~~s----------- 247 (474)
+|.+-+.+++-+ |-|..||||+.|||+|||.+.||.|++++. +..|++|+|+|+. .||++-...
T Consensus 398 GHtg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 456667788887 689999999999999999999999999998 7899999999832 333332110
Q ss_pred ------------------CCccEEEEecCCCeE----EEEEeecCcceeEEEEEecCCCeEEEE---eCCCcEEEEECCC
Q 011970 248 ------------------SHVPLKILSIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRN 302 (474)
Q Consensus 248 ------------------~D~tIkLWdi~tG~~----L~tl~~h~~~v~~V~F~~~~~~~ll~~---~~D~tIkIWDv~t 302 (474)
.|..+-.|.-..-+. +...-.|-..+..|.+. -.|++|++. +....|-|.++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 112234565331111 11112355778999998 568888884 4667888999887
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~ 381 (474)
..-..-++--.+.|-.+.|.|-.-+|+.++.+.|+|+|+ .+++++.|.-..-| |.+++++|.|+-|+.++.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~--- 627 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY--- 627 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC---
Confidence 665555544456788999999999999999999999999 58998888777778 689999999999999877
Q ss_pred ccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 011970 382 EDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 460 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L 460 (474)
|+.+-..|+.- -+..++|+-|.. .|++|+|++-=..+
T Consensus 628 --------d~k~~WfDldlsskPyk~lr~H~~----------------------------------avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 628 --------DKKMCWFDLDLSSKPYKTLRLHEK----------------------------------AVRSVAFHKRYPLF 665 (733)
T ss_pred --------CCeeEEEEcccCcchhHHhhhhhh----------------------------------hhhhhhhcccccee
Confidence 99998888753 467788888885 89999999999999
Q ss_pred EEEcCCCcEEEc
Q 011970 461 YTGNRHGLVHVW 472 (474)
Q Consensus 461 aSgs~DgtVklW 472 (474)
+|||.||+|.|.
T Consensus 666 as~sdDgtv~Vf 677 (733)
T KOG0650|consen 666 ASGSDDGTVIVF 677 (733)
T ss_pred eeecCCCcEEEE
Confidence 999999999875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-16 Score=165.17 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=165.7
Q ss_pred ceEEEEeCCC--CeEEEEecCCCcEEEeecCCCeEE------EE--EcCCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 188 PGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML------YS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 188 ~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~tg~~l------~t--l~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
|..+.|++.. ..+||-+-.||-|.|+|.+.-... +- .|.+.|.++++-||.++++.. ++|.|||+||+
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa--sGDsT~r~Wdv 129 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA--SGDSTIRPWDV 129 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc--cCCceeeeeee
Confidence 3446776433 458999999999999997643321 22 235679999999988888774 66999999999
Q ss_pred CCCeEEEE--EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eE--------------------Ee
Q 011970 258 EDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LM--------------------EV 308 (474)
Q Consensus 258 ~tG~~L~t--l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~--------------------~~ 308 (474)
+++++... +-||...+++++|.+.+..-+++|+.|+.|.|||++-.. |. ..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 99999877 889999999999986544555568899999999987422 11 11
Q ss_pred ccccCCceEE---EEEcCCCcEEEEEc--CCcEEEEeCC-CcEE------EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 SRTEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELV------TSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 l~~h~~~v~s---v~Fspdg~llaS~s--D~tIklWd~~-G~ll------~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
...|...+.+ +.|.-|..+|||++ |++|||||++ -.+. ....-|..--.--.+.++..-.-|.+|...
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 2234455555 55666777788876 9999999985 3322 222212110000013455555667888877
Q ss_pred ecCCCccccccCCCCeEEEEeCCCC--eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
|. |++|.+||+.+- ..++.+.||..+ .. .| .=..|
T Consensus 290 Ct-----------D~sIy~ynm~s~s~sP~~~~sg~~~~--------------------sf-----------~v-ks~lS 326 (720)
T KOG0321|consen 290 CT-----------DNSIYFYNMRSLSISPVAEFSGKLNS--------------------SF-----------YV-KSELS 326 (720)
T ss_pred ec-----------CCcEEEEeccccCcCchhhccCcccc--------------------ee-----------ee-eeecC
Confidence 76 999999998542 234444555430 00 22 23469
Q ss_pred CCCCEEEEEcCCCcEEEcc
Q 011970 455 EERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd 473 (474)
||++.|+||+.|+.+.+|.
T Consensus 327 pd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CCCceEeccCCCcceeeee
Confidence 9999999999999999995
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=166.37 Aligned_cols=199 Identities=17% Similarity=0.158 Sum_probs=152.2
Q ss_pred CcEEEEEEcC-CceEEEEecCCCCccEEEEecCC--------CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 227 KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED--------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 227 ~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t--------G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+-|+..+|.| ...|+++ +.|++||||+++. -+.+.+|.+|.++|.+|+.. ..++.+.+++.|++|+.
T Consensus 295 d~ir~l~~~~sep~lit~---sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITA---SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhcCCCCCeEEEe---ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeee
Confidence 4678888887 5566665 6789999999932 35678999999999999975 56889999999999999
Q ss_pred EECCCC----------ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEecc---CCC---------
Q 011970 298 LDVRNA----------ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED---HLL--------- 354 (474)
Q Consensus 298 WDv~tg----------~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~g---H~~--------- 354 (474)
|++--. .+..++.||++.||.+++|+..+.|++.+ |||+++|+..++...+|.. |..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 955421 24567899999999999999999999998 9999999975332222221 100
Q ss_pred -----------------------------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 355 -----------------------------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 355 -----------------------------------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
....+.++-|...|.+.+.++ +.+|++|++.|..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~-----------~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT-----------AHEDRSIRFFDNK 519 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe-----------cccCCceeccccc
Confidence 000012334444444444444 4459999999999
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+|+.++...+|-. .|+++++.|+|-+|+||+.|+.|++|.+
T Consensus 520 ~~~~l~s~~a~~~----------------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILHSMVAHKD----------------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccchheeeccc----------------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 9999999888875 8999999999999999999999999975
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=150.73 Aligned_cols=266 Identities=14% Similarity=0.095 Sum_probs=187.9
Q ss_pred CCCeEEeeec--cccceeeEeecCCCceEEEEEEeeCCCEE-EEEEeecCCCcccee-eeEEEEeEeccCCCC-Cccc--
Q 011970 106 HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSL-ITVSVYASDNFSSLK-CRSTKIEYIRRGKPD-SGFA-- 178 (474)
Q Consensus 106 ~dgtiklW~~--~tg~~l~~l~g~~~~~i~sv~fspdg~~L-is~S~~~s~d~s~Lk-~~~~~iw~i~~G~~~-~~~~-- 178 (474)
.|..|-+-.+ +.+..++..=.+|.+-||.|+-+|..+.| +|+-. +++..+ ...+-||.|+...-- ...+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn----~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYN----DTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEe----ccCCCcceeeEEEEecccccCccccchhh
Confidence 3444544333 33444554334677889999999998865 44332 222231 234568998543321 1111
Q ss_pred ---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC---CceEEEEe
Q 011970 179 ---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKHVQEIKISP---GIMLLIFN 244 (474)
Q Consensus 179 ---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~-------~~~V~~vafSp---g~~la~~s 244 (474)
....++++.+..|+|- ||+..||+-. |..|-||+++.+.. ...+. .....+=++|| |.++++.+
T Consensus 114 ~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 1222446667799997 7999999876 88999999998775 33332 23566778887 77777753
Q ss_pred cCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCC-CceEEeccccCCceEEEEE
Q 011970 245 RSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 245 ~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~F 321 (474)
|.++.-||++|-.+...++ .|.+.|+.++|.| .-+.+|+ +++|+-|||||.+. ...++.+.+|..|||+|.|
T Consensus 192 ----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 192 ----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ----CCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 6899999999988888887 6888999999985 3455554 68999999999986 5578889999999999999
Q ss_pred cC-CCcEEEEEc-CCcEEEEeCC------------------------------CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 322 LY-ENQLFLTFR-NRTVAVWNFR------------------------------GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 322 sp-dg~llaS~s-D~tIklWd~~------------------------------G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
.| ..||++|++ |..|-||... ...+++++.|.+. |..+++|.-
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsa 341 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSA 341 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccC
Confidence 97 467888988 9999999831 1134588889887 678888774
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 370 -QDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 370 -g~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-=++||-|. ||.+-|-++
T Consensus 342 dPWiFASLSY-----------DGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLSY-----------DGRVIISSV 360 (370)
T ss_pred CCeeEEEecc-----------CceEEeecC
Confidence 445566554 998888776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-14 Score=151.07 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=136.5
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
..+|.+||...+ ..+.+. ...|.+.+|||++ .|+..+....+..|.+||+.+|+... +..+.+.+..++|+ |+|
T Consensus 183 ~~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 357999998544 334443 4578999999854 56655433445579999999987643 33233445678887 678
Q ss_pred CeEEEE-eCCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCc--EEEEeCC-CcEEEEeccCCCC
Q 011970 284 EKLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 355 (474)
Q Consensus 284 ~~ll~~-~~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~t--IklWd~~-G~ll~tl~gH~~~ 355 (474)
.+|+.. +.++ .|.+||+.++++.+. ..|......++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888754 4444 699999999987654 44544556789999999888766 455 4455664 553 333222222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
..+++|||||++|+..+. .+....|.+||+.+|+.. .|. +..
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~--------~~~~~~I~v~d~~~g~~~-~Lt-~~~----------------------- 379 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHG--------SGGQYRIAVMDLSTGSVR-TLT-PGS----------------------- 379 (433)
T ss_pred -----ccCEEECCCCCEEEEEEC--------CCCceeEEEEECCCCCeE-ECC-CCC-----------------------
Confidence 246899999999997653 112347999999888754 443 221
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
...+..|+|||+.|+..+.+
T Consensus 380 -----------~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 380 -----------LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -----------CCCCceECCCCCEEEEEEec
Confidence 23457899999988776653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=152.78 Aligned_cols=274 Identities=11% Similarity=0.093 Sum_probs=169.4
Q ss_pred eEEeeeccccceeeEe--ecCCCceEEEEEEe--------------eCCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 109 VCAAFSRETNRRICFL--NVSPDEVIRSLFYN--------------KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 109 tiklW~~~tg~~l~~l--~g~~~~~i~sv~fs--------------pdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
.++|||..+|+.|... .+ +.+..+.++.. ..+..|+-++..+..+ -...++.+||.. |.
T Consensus 120 ~~~l~d~~~~~~~~~~~~~~-~~~~~r~~ah~~~d~i~~~~tg~~g~f~~~ia~v~~~~~~~---~~~~~l~i~D~~-g~ 194 (433)
T PRK04922 120 EYELFDVFKGERLLGLRLTA-PASAMRQAAHQIADAIYEKITGVPGAFWTRIAYVTVSGAGG---AMRYALQVADSD-GY 194 (433)
T ss_pred EEEEEECCCCCEeeceEEEe-CHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEEEeCCCC---CceEEEEEECCC-CC
Confidence 6899999888876543 22 21222222100 1122344444322211 123578888864 43
Q ss_pred CCCccceeeeccccCceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCC
Q 011970 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSS 247 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s 247 (474)
... .+..+ -..+.+++|+ |||+.|++.+.+ ..|.+||+.+|+...... ...+.+++|||++ .++......
T Consensus 195 ~~~--~lt~~--~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 195 NPQ--TILRS--AEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred Cce--EeecC--CCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 211 23322 2234478998 799999998743 479999999988543221 3345688999854 555443333
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCceEEeccccCCceEEEEEcCC
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYE 324 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~t--IkIWDv~tg~~~~~l~~h~~~v~sv~Fspd 324 (474)
+...|.+||+.+|++. .+..+......++|+ |++.+|+..+ .++. |.++|+.+++..+... +.......+||||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpD 346 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPD 346 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCC
Confidence 3446999999998864 455454455678887 6788888876 4555 5556777887654422 2223446889999
Q ss_pred CcEEEEEc-C-C--cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 325 NQLFLTFR-N-R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 325 g~llaS~s-D-~--tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+.++..+ + + .|.+||+. |+.. .+... .+ ..+..|+|||++|+..+. .+....|.++|+
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~--------~~g~~~L~~~~~- 410 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATR--------EGGRGVLAAVST- 410 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-
Confidence 99998764 3 2 69999996 5544 55432 23 246789999999887764 122456888897
Q ss_pred CCeEEEEecCCC
Q 011970 400 TGKCLAKINATN 411 (474)
Q Consensus 400 tG~cl~tl~gH~ 411 (474)
+|...+.+..+.
T Consensus 411 ~g~~~~~l~~~~ 422 (433)
T PRK04922 411 DGRVRQRLVSAD 422 (433)
T ss_pred CCCceEEcccCC
Confidence 677677776554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=159.83 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=199.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
.|+.|+|-|||..|+.+. ++ .+-|+|...|.+.++.+ .+ -.-+..|+++ .||+..|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llqtLK--gH--KDtVycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQPLK--GH--KDTVYCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCcccccccc--cc--cceEEEEEEc-cCCceeccCCCceeE
Confidence 699999999999998753 33 67899999999876433 33 3345599998 799999999999999
Q ss_pred EEeecCC-CeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 211 KVFDLKN-YTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 211 KlWdl~t-g~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
-||+-+- |.+.| -|++.|++..|.| ...||+.+- ...-+|+.++-.+.+.- -..++.+.+|. .||++++.
T Consensus 78 I~W~~klEG~LkY-SH~D~IQCMsFNP~~h~LasCsL----sdFglWS~~qK~V~K~k--ss~R~~~CsWt-nDGqylal 149 (1081)
T KOG1538|consen 78 IIWTSKLEGILKY-SHNDAIQCMSFNPITHQLASCSL----SDFGLWSPEQKSVSKHK--SSSRIICCSWT-NDGQYLAL 149 (1081)
T ss_pred EEecccccceeee-ccCCeeeEeecCchHHHhhhcch----hhccccChhhhhHHhhh--hheeEEEeeec-CCCcEEEE
Confidence 9998653 33333 3577899999999 777887643 24678997664433211 13567788886 56778888
Q ss_pred EeCCCcEEEEECCCCce---EEeccccCCceEEEEEcCCC-----cEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCC
Q 011970 289 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDC 359 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fspdg-----~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~ 359 (474)
|-.||||-|-| .+||. ++...|.+..||+++|+|.. ..++... .+|+..+.++|+.+..=. .....|-
T Consensus 150 G~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r-~L~FdP~- 226 (1081)
T KOG1538|consen 150 GMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR-ALNFDPC- 226 (1081)
T ss_pred eccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc-cCCCCch-
Confidence 88999999998 55553 34566788899999999853 4566666 778888888887664111 1122222
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
.+..-|+|.++.-|+. |+-++++- ..|-.+.|+-....
T Consensus 227 ---CisYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D~--------------------------- 264 (1081)
T KOG1538|consen 227 ---CISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQDS--------------------------- 264 (1081)
T ss_pred ---hheeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccce---------------------------
Confidence 3556689999998754 99999997 57888888855332
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|||+|+..|+||..+-|-.||||..++
T Consensus 265 -------WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 265 -------WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred -------eEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999999999999999999998765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-15 Score=147.31 Aligned_cols=273 Identities=14% Similarity=0.113 Sum_probs=192.4
Q ss_pred EEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 92 IEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 92 ~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
..+.|+ |++||.|..||.+-+||..|-..-+.|.+ |--+|.||.||+||..|.|+| .| +.+.+||+.
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS----~D------~si~lwDl~ 95 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSS----RD------WSIKLWDLL 95 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeec----CC------ceeEEEecc
Confidence 334444 99999999999999999998776677775 889999999999999999976 55 899999999
Q ss_pred cCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEcC---CcEEE-EEEcC-CceEEE
Q 011970 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD---KHVQE-IKISP-GIMLLI 242 (474)
Q Consensus 170 ~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~~---~~V~~-vafSp-g~~la~ 242 (474)
.|.+++.+. |.. .++++.|.|.+-...+..-.+..-.|=++.+++ +|-.=.+ +.+.+ ..|.+ |..+++
T Consensus 96 ~gs~l~rir-f~s----pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 96 KGSPLKRIR-FDS----PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred CCCceeEEE-ccC----ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 999865432 332 244788876554443333344444444544422 1111111 11211 34665 777776
Q ss_pred EecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEeCCCcEEEEECCC----CceEEe-----ccc-
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN----AELMEV-----SRT- 311 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t----g~~~~~-----l~~- 311 (474)
+.+ -+.+-+.|.+|-+|...|+--. ..++.+-|+ .-+..+++-..|.+||.++++. |+-.+. +..
T Consensus 171 Gts---KGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 171 GTS---KGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred ecC---cceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 643 4789999999999999998544 678888886 5678888899999999999872 111111 110
Q ss_pred cCCce-EEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 312 EFMTP-SAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 312 h~~~v-~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
=+... ..+.||.||.++..++ -..+-||... |.+++.|+|..+-. .-.|.+.|=--.|+|-.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~i~si~---------- 312 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPIIASIA---------- 312 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceeeeeecc----------
Confidence 00112 2578999999998887 6689999996 99999999887421 45677888878888753
Q ss_pred CCCCeEEEEeCCC
Q 011970 388 GSAGSINVSSILT 400 (474)
Q Consensus 388 s~DgtIklWdi~t 400 (474)
.|+|.||...+
T Consensus 313 --sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 --SGVVYIWAVVQ 323 (405)
T ss_pred --CCceEEEEeec
Confidence 69999998643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=149.68 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=196.5
Q ss_pred cccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecC----CCceEEEEEEeeCCC---
Q 011970 70 DTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNND--- 142 (474)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspdg~--- 142 (474)
+.|..|.+.++|++++-.+. ..+++.+-...+.+++..-.--++-|+-+ |+|..+.++++-|-.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e---------~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDE---------PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred ccCCCccceeeeehhcCCCC---------CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 56777888888888855544 23344444556666664421123333322 667888888875532
Q ss_pred -EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE
Q 011970 143 -SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 221 (474)
Q Consensus 143 -~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l 221 (474)
.||.++ .. .-|+|-|+..+++.+. +-.+ -..+..+.|.|.+-++|.|+|.|.+||+||+++..|+
T Consensus 106 p~la~~G----~~------GvIrVid~~~~~~~~~--~~gh--G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 106 PFLAAGG----YL------GVIRVIDVVSGQCSKN--YRGH--GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred eeEEeec----ce------eEEEEEecchhhhccc--eecc--CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 466543 33 6899999999998553 3333 3445578998777789999999999999999999999
Q ss_pred EEEc-----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE-------------------------E---e
Q 011970 222 YSIS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-------------------------F---Y 267 (474)
Q Consensus 222 ~tl~-----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t-------------------------l---~ 267 (474)
..+- .+.|.+|.||+ |..+|++ +.|.+||+|++..-+.-.. | .
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~Sc---GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASC---GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeecc---CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 8874 46899999996 6777654 7899999999974221111 1 0
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC-CCCce---------EEeccccC----CceE--EEEEcCCCcEEEEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNAEL---------MEVSRTEF----MTPS--AFIFLYENQLFLTF 331 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv-~tg~~---------~~~l~~h~----~~v~--sv~Fspdg~llaS~ 331 (474)
-|...|..|.| +|+.+|++|-++.|..|-. +=++- -.+.-++. -.+| .++|.|-++.||.+
T Consensus 249 iHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 249 IHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred cccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 13333344443 3688999998889999976 21221 11212222 2344 45667889999999
Q ss_pred c-CCcEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 332 R-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 332 s-D~tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
. -|+|-+||++ -+ ...|+..+... ..|+..+||.||.+|+-.|. |++|-=||..
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcd-----------d~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCD-----------DGTVWRWDRV 383 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeC-----------CCcEEEEEee
Confidence 9 9999999995 33 34456554432 35899999999999999987 9999999853
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=148.96 Aligned_cols=261 Identities=13% Similarity=0.145 Sum_probs=184.0
Q ss_pred ceeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCC--------CeEEeeeccc---------cceeeEeec
Q 011970 66 VEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHS--------GVCAAFSRET---------NRRICFLNV 126 (474)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~d--------gtiklW~~~t---------g~~l~~l~g 126 (474)
|-..-.+++........-|+-+-..|+.|+.+ .+.|++..+. --+.||++.. =++++.|.-
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT 120 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH
Confidence 33344455555555555566678889999988 4444443333 2467899864 235666764
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-Cccceeee-ccccCceEEEEeC-CCCeEEEE
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-SGFALFES-ESLKWPGFVEFDD-VNGKVLTY 203 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~-~~~~lf~~-~~~~~~~~V~Fs~-~nGk~LaS 203 (474)
.+-+.|.+|-|-||++.||+. +| ..+-+|++..+.-. +..+.-.. ++.-.-.+-++|| .||..+++
T Consensus 121 eavg~i~cvew~Pns~klasm-----~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASM-----DD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEe-----cc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 444679999999999999984 24 58889999777642 11111110 1111111345665 58888886
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCC--ceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEE
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~ 277 (474)
. .|+|++.||+.|-++.+.+.+ ..|.++.|.|+ -.|++ +++|+.|||||.+. -..++++.+|.|+||.|.
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt---~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT---CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEE---cCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 5 599999999999888888864 46999999984 34444 47799999999874 457899999999999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCc-----------------------------eEEeccccCCceEEEEEc-CCCcE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAE-----------------------------LMEVSRTEFMTPSAFIFL-YENQL 327 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~-----------------------------~~~~l~~h~~~v~sv~Fs-pdg~l 327 (474)
|.+..++.+|+++.|..|-||...+-. .+++...|.+.|++++|| .|==+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 998778888889999999999765311 234567788999999987 56667
Q ss_pred EEEEc-CCcEEEEeC
Q 011970 328 FLTFR-NRTVAVWNF 341 (474)
Q Consensus 328 laS~s-D~tIklWd~ 341 (474)
|||-| ||.+-|=.+
T Consensus 346 FASLSYDGRviIs~V 360 (370)
T KOG1007|consen 346 FASLSYDGRVIISSV 360 (370)
T ss_pred EEEeccCceEEeecC
Confidence 77778 887766554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=151.06 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=150.3
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec---CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP 236 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s---~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp 236 (474)
..+.++|...+.. ..+... -..+.+.+|| |||+.||+.+ .+..+.+||+.+|+...... ...+.+++|||
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~--~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRS--PQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC---EEeecC--CCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 4666777543332 122222 2234578998 7999999865 34679999999987433221 23456799998
Q ss_pred Cc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCceEEecccc
Q 011970 237 GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTE 312 (474)
Q Consensus 237 g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~tIkIW--Dv~tg~~~~~l~~h 312 (474)
++ .|+......++..|.+||+++|++.+...+ ...+..+.|+ |++.+|+..+. ++..+|| |+.+++..+. ..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~ 329 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWE 329 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEEC-CCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecC
Confidence 55 455443333344699999999887554433 3456788887 67888887764 4566666 7777766544 223
Q ss_pred CCceEEEEEcCCCcEEEEEc--C--CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 313 FMTPSAFIFLYENQLFLTFR--N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s--D--~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
........|||||+.++..+ + ..|.+||++ |+ .+.|..... ..+..|||||++|+..+. .
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~~------~~~p~~SpDG~~i~~~s~--------~ 394 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTFL------DETPSIAPNGTMVIYSSS--------Q 394 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCCC------CCCceECCCCCEEEEEEc--------C
Confidence 33455788999999988765 3 358889996 55 445543211 246789999999998875 1
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 388 GSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 388 s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
+....+.++++ +|+..+.|.+|..
T Consensus 395 ~~~~~l~~~~~-~G~~~~~l~~~~~ 418 (429)
T PRK03629 395 GMGSVLNLVST-DGRFKARLPATDG 418 (429)
T ss_pred CCceEEEEEEC-CCCCeEECccCCC
Confidence 11234788897 7998999998875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=170.42 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=201.4
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
-|-|++.|+.++|. |-+|++||+|..+|+|.++|+.|+.++.| |..-|+.++-+.++-++|++| .| .
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS----~D------~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS----ND------K 254 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc----cC------c
Confidence 35588999999998 99999999999999999999999999998 778899999999999888865 66 7
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------CCcEEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIKI 234 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~~~V~~vaf 234 (474)
.|++|-+++|.+.. .|+++ .+.|.+++|+| - ++++.|||+++||.. -..+...+ ++.|-++-|
T Consensus 255 vIrvWrl~~~~pvs--vLrgh--tgavtaiafsP-~----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVS--VLRGH--TGAVTAIAFSP-R----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred eEEEEecCCCchHH--HHhcc--ccceeeeccCc-c----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeec
Confidence 89999999999855 35665 57778999995 2 378899999999965 12111111 245667777
Q ss_pred cC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 235 SP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 235 Sp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
-. +...++. +.|.+...|.++- +..+.....=|.++...+...+++-.+.-+.+|++.+|.+.+.+.+|.
T Consensus 325 ~~~~~~f~Tg---s~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 325 ENNGDRFLTG---SRDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred cccccccccc---cCCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 74 5555554 5566776665432 111111112222222222344455688999999999999999999999
Q ss_pred CceEEEEEcCCCcEEE-EEc-CCcEEEEeC-CCcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 314 MTPSAFIFLYENQLFL-TFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 314 ~~v~sv~Fspdg~lla-S~s-D~tIklWd~-~G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
+.++.+.|.|-+..++ ++. ||.+-|||+ .|..++ -+.+|... -.-+||+||+.++..-.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl------~d~kFSqdgts~~lsd~----------- 458 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL------VDGKFSQDGTSIALSDD----------- 458 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee------eccccCCCCceEecCCC-----------
Confidence 9999999998665554 556 999999999 587654 45677653 46789999999986322
Q ss_pred CCeEEEEeCCCCeEEEE
Q 011970 390 AGSINVSSILTGKCLAK 406 (474)
Q Consensus 390 DgtIklWdi~tG~cl~t 406 (474)
-|.+.|-..-.|+....
T Consensus 459 hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 459 HGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCceEEeccCCCccccc
Confidence 57777776544444443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=151.46 Aligned_cols=200 Identities=11% Similarity=0.111 Sum_probs=152.3
Q ss_pred ccccEEEEEee----ccEEEEeeCCCeEEeeecc----------------ccceeeEeecCCCceEEEEEEeeC--CCEE
Q 011970 87 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRE----------------TNRRICFLNVSPDEVIRSLFYNKN--NDSL 144 (474)
Q Consensus 87 ~~~~V~~i~~s----~~~las~s~dgtiklW~~~----------------tg~~l~~l~g~~~~~i~sv~fspd--g~~L 144 (474)
|..-|.-|..+ .-+.|+=|+.|-|++|++. ..+.|.+++| |..-=+.|.|||- |. |
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~-L 227 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGR-L 227 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccc-c
Confidence 55555555555 4567788999999999975 2456889998 4455799999992 32 2
Q ss_pred EEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC---eEE
Q 011970 145 ITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TML 221 (474)
Q Consensus 145 is~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg---~~l 221 (474)
+| .| ....|++|...+|..--...-|.. |...|..+.+||....++||||-|++|||||+..+ .|+
T Consensus 228 ls------GD----c~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 228 LS------GD----CVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cc------Cc----cccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 22 22 336889999988876222122332 56677788999766679999999999999999988 455
Q ss_pred EE-EcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC---CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 222 YS-ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 222 ~t-l~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t---G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
.+ -+...|.-|.|+. -.+||++ ++|++++|||+++ |+.+.+|+.|.++|.+|.|+|.+...++++++|++|-
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLasG---~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLASG---GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred EeeccCCceeeEEccCCcceeeec---CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 44 3456899999994 3355554 6789999999875 7888999999999999999988888999999999999
Q ss_pred EEECCC
Q 011970 297 ILDVRN 302 (474)
Q Consensus 297 IWDv~t 302 (474)
|||+.-
T Consensus 374 iWDlsv 379 (440)
T KOG0302|consen 374 IWDLSV 379 (440)
T ss_pred EEEeec
Confidence 999864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=147.09 Aligned_cols=276 Identities=15% Similarity=0.204 Sum_probs=187.8
Q ss_pred CceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCCCCCc--cceeee---ccccCceEEEEeCCCCeEEE
Q 011970 129 DEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFES---ESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 129 ~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~--~~lf~~---~~~~~~~~V~Fs~~nGk~La 202 (474)
.+.|.++.|.++.. .|+|++ -| ..++||.+.+++...+ ...|.. .|...+..|.|+ |+|.+||
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G----~D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAG----GD------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA 81 (434)
T ss_pred CCceEEEEeccCcccceeccc----Cc------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeee
Confidence 37799999999987 888864 44 6899999988887553 111221 245667789998 8999999
Q ss_pred EecCCCcEEEeecC--------C--------CeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 203 YSAQDSIYKVFDLK--------N--------YTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 203 S~s~D~tiKlWdl~--------t--------g~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
||+.+++|-||-.. + ..-.+.+ +.+.|.+++++|+++++.++ +.|.++++||+..|++++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~--s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG--SVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee--eccceEEEEEeccceeEe
Confidence 99999999999866 2 1112233 34689999999988887774 669999999999999999
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE---------------------EeccccC--CceEEEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---------------------EVSRTEF--MTPSAFIF 321 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---------------------~~l~~h~--~~v~sv~F 321 (474)
.+..|.+-+..|++- |-++++++.+.|...+...+.....+ +.+...+ ..-....|
T Consensus 160 ~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 999999999999986 56888888888876665554432211 1111111 12234678
Q ss_pred cCCCcEEEEEc-----CCcEEEEeCCCcEEEEeccCCCCcCCC-------CeeEEEECC------------------CCC
Q 011970 322 LYENQLFLTFR-----NRTVAVWNFRGELVTSFEDHLLWHPDC-------NTNNIYITS------------------DQD 371 (474)
Q Consensus 322 spdg~llaS~s-----D~tIklWd~~G~ll~tl~gH~~~~~~~-------~v~svafSp------------------Dg~ 371 (474)
+|||.+|++.+ .+.+.. ++...|.++...-|.| .+-.+.|+| =+-
T Consensus 239 TPdG~llvtPag~~~~g~~~~~-----n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFR-----NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred CCCCcEEEcccceeeeCCceee-----ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 99999999863 344421 1122333332211111 133455554 233
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
..|.++ -+.|-|+|.++-+.+..... |=. .|+.
T Consensus 314 vfaiAt------------~~svyvydtq~~~P~~~v~nihy~----------------------------------~iTD 347 (434)
T KOG1009|consen 314 VFAIAT------------KNSVYVYDTQTLEPLAVVDNIHYS----------------------------------AITD 347 (434)
T ss_pred EEEEee------------cceEEEeccccccceEEEeeeeee----------------------------------eecc
Confidence 444444 47899999766555554433 321 7999
Q ss_pred EEEcCCCCEEEEEcCCCcE
Q 011970 451 LFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 451 lafSpDg~~LaSgs~DgtV 469 (474)
++||+||..|+-.|.||-.
T Consensus 348 iaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 348 IAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred eeecCCCcEEEEeccCCce
Confidence 9999999999999999954
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-14 Score=141.24 Aligned_cols=227 Identities=17% Similarity=0.253 Sum_probs=172.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+..|. .|+..|+-|+.|| +|++....-.. -.... +..|-+.-||-. .+|..+.. .-+.+|+.+++.++.+=.+.
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~-qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIK-QPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecC-CCceEEEEEcccCceEEEEe
Confidence 45576 6888999999998 89998875433 22222 346788888854 34444321 11349999988776554333
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc---cCCceEEEEEcCCCcEEEEEc---CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~---h~~~v~sv~Fspdg~llaS~s---D~tIklWd~ 341 (474)
. .+.+.+|.+.- ++|++.=++. |.|+|+++-+++++... +...+-++.+++++-++|--+ .|.|.|||.
T Consensus 86 f-pt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 F-PTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred c-CCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 2 26788999863 5676664443 99999999999987543 555677777778888888643 789999999
Q ss_pred -CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 342 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 342 -~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
+-+.+.+++.|.+. +-.++|+|||.+||++|. .|| ||+..+.+|+.+..|+--.. |
T Consensus 161 ~nl~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~------~ 218 (391)
T KOG2110|consen 161 INLQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY------P 218 (391)
T ss_pred ccceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce------e
Confidence 58889999999987 689999999999999986 666 79999999999999865332 2
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. .|.+|+||||+++|+..|.-+|||+..
T Consensus 219 ~--------------------------~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 219 V--------------------------SIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred e--------------------------EEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 799999999999999999999999975
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=154.95 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=128.0
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eEEeccccCCceEEEEEcCC-CcEEEEEc-CCc
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 335 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D~t 335 (474)
.+.||...|..++|.|..+.-|+++|+|.+|+||++-.+- .+..|.||+..|--|++.|- .+.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999985444555567899999999987543 35568999999999999974 44566666 999
Q ss_pred EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 336 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 336 IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
|+|||+ +|+-+-++. |.+- |.++.|+.||.+|++.|+ |..|||||..+|+.++.-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG~- 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEGA- 217 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccCC-
Confidence 999999 599888887 8876 799999999999999998 999999999999999999999861
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEE---cCCCcEEEcc
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---NRHGLVHVWS 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg---s~DgtVklWd 473 (474)
.=.-+.|--+|..+-|| ..+..+-|||
T Consensus 218 --------------------------------k~~Raifl~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 218 --------------------------------KPARAIFLASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred --------------------------------CcceeEEeccCceeeeccccccccceeccC
Confidence 11235667788844443 2577888997
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=169.45 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=185.1
Q ss_pred cEEEEEee--cc----EEEEeeCCCeEEeeeccc---c---ceeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCcc
Q 011970 90 KVIEIVAA--RD----IVFALAHSGVCAAFSRET---N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFS 156 (474)
Q Consensus 90 ~V~~i~~s--~~----~las~s~dgtiklW~~~t---g---~~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s 156 (474)
+-.+++.+ ++ +||.|.+||.|-|||... | ..|.+.+. |.+.|+.|-|||+.. .||+ |.+|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLAS----Ga~~-- 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLAS----GADD-- 138 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeec----cCCC--
Confidence 44666666 44 499999999999999664 3 35677776 779999999999976 8887 4466
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEE
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEI 232 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~v 232 (474)
..|-|||+..-+.-.+.. ......-|-+|++.-....+|||++.++.+-||||+.-+.+..+.+ -.+..|
T Consensus 139 ----geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 139 ----GEILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred ----CcEEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 799999986643211100 1101122336777555567899999999999999987776665542 347899
Q ss_pred EEcCC--ceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 233 KISPG--IMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 233 afSpg--~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
+|+|+ ..+++++.+...-.|++||++. -..+++|++|...+.++++.++|...||+++.|+.|-+||..|||.+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 99983 2444443333334699999764 35789999999999999999888888999999999999999999999988
Q ss_pred cccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCC
Q 011970 310 RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 343 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G 343 (474)
....+|+..|.|.|..- +|+.++ ||.|.|+.++|
T Consensus 293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 88889999999999887 788888 99999999963
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-14 Score=142.51 Aligned_cols=287 Identities=13% Similarity=0.157 Sum_probs=208.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe------ccCCCCCccceeeeccccCceEEEEeCC
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i------~~G~~~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
-|.+ |.+-|.+|-||-||+.|++ |+|| +.+++|.+ +..|+++ +.++-|..-+.+++|+ .
T Consensus 51 D~~~-H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~-~ 115 (609)
T KOG4227|consen 51 DVRE-HTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFD-L 115 (609)
T ss_pred hhhh-hccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCCce---eccCccccceEEEEEc-c
Confidence 4555 7899999999999999998 6699 89999998 3334433 5555455668899998 4
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe-EEEE--Eee
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT-VLKV--FYH 268 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~-~L~t--l~~ 268 (474)
....|-||..|++|-+-|+++-+-++.+.. ..|..+..+| +.+|++.+ .++-|-+||+...+ .+.- +..
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecC
Confidence 667888999999999999999999998863 3699999998 88888774 46899999998765 2211 111
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--EE-----eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~~-----~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
......++-|.|...-.||+.++-+-+-+||++-..- ++ -|..+...-.++.|+|.|..|++-. -..--++|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 2234478889876667777789999999999886431 11 1222111112567999999999987 55666899
Q ss_pred CC-CcEEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-----C-----------
Q 011970 341 FR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-----G----------- 401 (474)
Q Consensus 341 ~~-G~ll~tl~gH~--~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-----G----------- 401 (474)
+. ..|-.--.+|. +...-|.+.+++|-.|-. ++|||. +=.|.||.+.- |
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhC
Confidence 85 44432222333 344445667788876654 788775 88899998742 1
Q ss_pred -------eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 402 -------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 402 -------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.+..|+||.. .+..|-|+|-...|+|.+-.+.+|||.
T Consensus 341 ~~~~~i~~~~~VLrGHRS----------------------------------v~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRS----------------------------------VPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEecccc----------------------------------cccceeecCCcceEeccchhhheeccc
Confidence 23445666664 678899999999999999999999995
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=144.83 Aligned_cols=207 Identities=12% Similarity=0.055 Sum_probs=140.3
Q ss_pred CCcEEEeecCCCeEEE-EEcCCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 207 DSIYKVFDLKNYTMLY-SISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~-tl~~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
...|.+||..++.... +-+...|.+.+|||+ ..|+..+...++..|.+||+++|+.. .+..+.+.+..++|+ |+|.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCCC
Confidence 3478888875554322 223568999999985 45665544445678999999999764 344444567788887 6788
Q ss_pred eEEEE-eCCCc--EEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCCcEEEEeccCCCCcC
Q 011970 285 KLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHP 357 (474)
Q Consensus 285 ~ll~~-~~D~t--IkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G~ll~tl~gH~~~~~ 357 (474)
+|+.. +.|+. |.+||+.++++.+. ..+........|+|||+.++..+ ++ .|.+||++|..++.+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-- 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-- 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEc-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc--
Confidence 88764 55655 66679999987654 44555566789999999888765 33 577778876555555444332
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
+....|||||++|+..+. .+.+..|.+||+. |+....+.. ..
T Consensus 336 ---~~~~~~SpdG~~ia~~~~--------~~~~~~i~~~d~~-~~~~~~lt~-~~------------------------- 377 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQ--------GGGQFSIGVMKPD-GSGERILTS-GF------------------------- 377 (435)
T ss_pred ---ccCeEECCCCCEEEEEEc--------CCCceEEEEEECC-CCceEeccC-CC-------------------------
Confidence 356889999999997654 1224578899974 444444432 11
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.+.++.|||||+.|+-.+.
T Consensus 378 ---------~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 378 ---------LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ---------CCCCCeECCCCCEEEEEEc
Confidence 3456899999999876554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=168.76 Aligned_cols=274 Identities=12% Similarity=0.156 Sum_probs=201.1
Q ss_pred ccEEEEeeCCCeEEeeecc--ccc----eeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCccceeeeEEEEeEe
Q 011970 98 RDIVFALAHSGVCAAFSRE--TNR----RICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~--tg~----~l~~l~g~~~~~i~sv~fspdg~~---Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+++=++-|.+.+..||.+. ++. ....++ .++..+.|+|.+.|.- ||.+ |.+| ..|-||+.
T Consensus 29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG---G~ed------G~I~ly~p 97 (1049)
T KOG0307|consen 29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG---GLED------GNIVLYDP 97 (1049)
T ss_pred hccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec---cccC------CceEEecc
Confidence 5544555667777777644 222 333443 3467889999999987 3432 4577 89999996
Q ss_pred ccCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-c---CCcEEEEEEcC--CceE
Q 011970 169 RRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S---DKHVQEIKISP--GIML 240 (474)
Q Consensus 169 ~~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-~---~~~V~~vafSp--g~~l 240 (474)
..=.-+....+..+ .|.+.|..+.|.+--|.+||||+.||+|-|||+++-+.-++. . .+.|..|+++- ...|
T Consensus 98 ~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 98 ASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred hhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHh
Confidence 43111111122221 356778889998655669999999999999999986544444 1 36899999993 5666
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCc--ceeEEEEEecCCCeEEEEeCC---CcEEEEECCCC-ceEEeccccCC
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNA-ELMEVSRTEFM 314 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~--~v~~V~F~~~~~~~ll~~~~D---~tIkIWDv~tg-~~~~~l~~h~~ 314 (474)
|++ +.++.+-|||++.-+.+-.|..|.. ++..|+|.|..-.+++++++| -.|++||+|.- ..++++++|..
T Consensus 178 AS~---s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 178 ASG---SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred hcc---CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 654 4467899999998777777776544 457899986555677776643 57999999974 46788999999
Q ss_pred ceEEEEEcCCC-cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 011970 315 TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 315 ~v~sv~Fspdg-~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~D 390 (474)
.|.++.|.+.. .+|+|+. |+.|-+||.+ ||.|.+|--..+| +..|.|.|-.- +++.+|. |
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-----~fdv~w~pr~P~~~A~asf-----------d 318 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-----CFDVQWCPRNPSVMAAASF-----------D 318 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc-----eeeeeecCCCcchhhhhee-----------c
Confidence 99999999766 8888888 9999999995 9999999998899 57899999654 7777776 9
Q ss_pred CeEEEEeCCCC
Q 011970 391 GSINVSSILTG 401 (474)
Q Consensus 391 gtIklWdi~tG 401 (474)
|.|-|..+.++
T Consensus 319 gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 319 GKISIYSLQGT 329 (1049)
T ss_pred cceeeeeeecC
Confidence 99999998654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=152.35 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=201.2
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
.|.+|+|. |-.|+-++ +..+-++|...|-.+.+|.| |.+.|++|||+.||+..||++ .| +.+-||.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~----aD------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGS----AD------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCC----Cc------eeEEEec
Confidence 46677777 43333333 33567999999999999997 889999999999999999855 45 6777887
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecC
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRS 246 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~ 246 (474)
-+---. ....|...+....|. |=.+.|||+|-. ..-+|..+.-...+.-....|.++++. +|+.++.+
T Consensus 82 ~klEG~------LkYSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG--- 150 (1081)
T KOG1538|consen 82 SKLEGI------LKYSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG--- 150 (1081)
T ss_pred ccccce------eeeccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe---
Confidence 432111 122244556688998 456789998853 366887554222221123578889999 56666665
Q ss_pred CCCccEEEEecCCCeEEEEEe---ecCcceeEEEEEecCC----CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEE
Q 011970 247 SSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 319 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~---~h~~~v~~V~F~~~~~----~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv 319 (474)
-.++||.|=| .+|+.--.+. |....+|+|+|+|..+ +.+++..+..|+-.+.+ +|+.+...+.-...+-.+
T Consensus 151 ~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 151 MFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI 228 (1081)
T ss_pred ccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh
Confidence 4478998887 5777755555 4567899999987553 57777889999999885 566666444444567778
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+-|+|.+++-|+ |+.++++.-+|-.+-|+.....| +|+|+..|++|+.+.||. ||||--+|+
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhh
Confidence 8889999999987 99999999889999999988889 799999999999999998 999999887
Q ss_pred C
Q 011970 399 L 399 (474)
Q Consensus 399 ~ 399 (474)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=143.97 Aligned_cols=282 Identities=14% Similarity=0.201 Sum_probs=191.1
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fsp--dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
+..+|++...|+|+|+|..||+.+..+.+ +...+.-+.|.. -...+++++. | .+||+||++...-.+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ss----D------G~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSS----D------GTVRLWDIRSQAESA 108 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEecc----C------CeEEEEEeecchhhh
Confidence 35688888999999999999999999997 557788888865 3566788763 3 499999997655422
Q ss_pred ccceeeeccccCceEEEEeCC--CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 176 GFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~--nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
...|+.. .. -.+..|+ - ++++++.|..- ...|..|-
T Consensus 109 -~~~~~~~-~~-~~f~~ld-~nck~~ii~~GtE~--------------------------------------~~s~A~v~ 146 (376)
T KOG1188|consen 109 -RISWTQQ-SG-TPFICLD-LNCKKNIIACGTEL--------------------------------------TRSDASVV 146 (376)
T ss_pred -heeccCC-CC-CcceEee-ccCcCCeEEecccc--------------------------------------ccCceEEE
Confidence 2234432 11 1256775 4 46666665310 01234577
Q ss_pred EEecCCCeE-EEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc----eEEeccccCCceEEEEEcCCC-c
Q 011970 254 ILSIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN-Q 326 (474)
Q Consensus 254 LWdi~tG~~-L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~----~~~~l~~h~~~v~sv~Fspdg-~ 326 (474)
|||++.-+. +..+. .|..-|..|.|.|.++..||+||.||-|-|+|+..-. ++.+.. |...|..+.|+-++ +
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYK 225 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcc
Confidence 888776554 55554 6788999999999999999999999999999987643 333433 44578889999777 3
Q ss_pred EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCc------CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 327 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH------PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 327 llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~------~~~-~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
.+.+-+ ..+.++|+++ |.++..|+...... .+| ++-+..-..++++.+.+.. ..+-++|-.-+
T Consensus 226 rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~--------~~n~~~~~~~~ 297 (376)
T KOG1188|consen 226 RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT--------DSNKGTIFPLV 297 (376)
T ss_pred eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc--------ccCceeEEEee
Confidence 355666 9999999995 98888776542100 000 1223333446666666542 11233333322
Q ss_pred -CC---CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 398 -IL---TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 398 -i~---tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.. .++.++.|+||.. +.|.++.|...+..|+||++||.+.+|.
T Consensus 298 ~~~s~~~~~~~a~l~g~~~---------------------------------eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHE---------------------------------EIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ecccccccCccccccCCcH---------------------------------HHHHHHhhhcccceeeccCCCceEEEEe
Confidence 22 3455677777542 3789999999999999999999999996
Q ss_pred C
Q 011970 474 N 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 3
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=166.66 Aligned_cols=228 Identities=16% Similarity=0.205 Sum_probs=171.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
|...|.++.|+ ..|.++.+|+.|.-+|||.++|+.|+.+..+ ..|.++|.+- +-++|++ |.|.-|++|-+.+|
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa---S~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA---SNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc---ccCceEEEEecCCC
Confidence 46667788997 7999999999999999999999999999875 4799999995 5555543 67999999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE-e-------------------------------
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-V------------------------------- 308 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-~------------------------------- 308 (474)
.++..|.||.+.|.+++|+|. .++|.|||+++||.+ -+.+. +
T Consensus 265 ~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999852 277899999999988 11100 0
Q ss_pred ---------ccccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 ---------SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 ---------l~~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
+..|...+.-+.++.| .-..+++. +-.+++|++ +|.+++.+.+|... +.-+-|+|=.-.|+..
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhh
Confidence 0111111111111111 13344444 667889999 69999999999987 5678899966655542
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 455 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp 455 (474)
++.||++-|||+-.|-.++.. .||. .+..-.||+
T Consensus 414 ----------ag~dgst~iwdi~eg~pik~y~~gh~-----------------------------------kl~d~kFSq 448 (1113)
T KOG0644|consen 414 ----------AGYDGSTIIWDIWEGIPIKHYFIGHG-----------------------------------KLVDGKFSQ 448 (1113)
T ss_pred ----------ccCCCceEeeecccCCcceeeecccc-----------------------------------eeeccccCC
Confidence 456999999999999776544 5555 455689999
Q ss_pred CCCEEEEEcCCCcEEE
Q 011970 456 ERNEIYTGNRHGLVHV 471 (474)
Q Consensus 456 Dg~~LaSgs~DgtVkl 471 (474)
||+.++-....|.+.+
T Consensus 449 dgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYI 464 (1113)
T ss_pred CCceEecCCCCCceEE
Confidence 9999998888887765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-13 Score=141.13 Aligned_cols=222 Identities=9% Similarity=0.066 Sum_probs=147.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.+||.+ |...+.|.. +.+.+.+..|||||+.|+.++... .+ .++.+|++..|+.. .+... ...+
T Consensus 183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~-g~------~~i~~~dl~~g~~~---~l~~~--~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYAN-GR------PRVYLLDLETGQRE---LVGNF--PGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecC-CC------CEEEEEECCCCcEE---EeecC--CCcc
Confidence 67788865 677777775 567899999999999999887433 33 58899999888751 12221 1233
Q ss_pred eEEEEeCCCCeEEE-EecCCCc--EEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~La-S~s~D~t--iKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...+|| |||+.|+ +.+.|+. |.+||++++++.. +. ...+.+.+|||++ .++..+...++..|.+||+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 467898 7998776 4555655 6667998887643 43 2346789999854 455444333345689999877765
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C-----
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 333 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~---D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D----- 333 (474)
. .+..+...+..+.|+ |+|++|+..+. +..|.+||+.+++......+ ..+....|+|||+.++..+ +
T Consensus 327 ~-~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 R-RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred E-EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4 343333455667886 67888887653 24688899876654333222 2466788999999987654 2
Q ss_pred -CcEEEEeCCCcEEEEec
Q 011970 334 -RTVAVWNFRGELVTSFE 350 (474)
Q Consensus 334 -~tIklWd~~G~ll~tl~ 350 (474)
..+.+.|++|...+.+.
T Consensus 403 ~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 403 APKLYTVDLTGRNEREVP 420 (435)
T ss_pred cceEEEEECCCCceEEcc
Confidence 24566677766555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=144.34 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=134.7
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSI--SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
..+.+||. +|.....+ ....|.+.+|||++ .|+..+.......|.+||+.+|+... +......+..++|+ |++.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 35666676 44443333 34678999999855 55554433334469999999997643 33222455678887 6788
Q ss_pred eEEE-EeCCCcEEEEE--CCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeC--CCcEEE--EeccCCCC
Q 011970 285 KLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVT--SFEDHLLW 355 (474)
Q Consensus 285 ~ll~-~~~D~tIkIWD--v~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~--~G~ll~--tl~gH~~~ 355 (474)
+|+. .+.|+..+||. +.+++.. .+..|........|+|||+.|+..+ ++...||.+ .+...+ ++.++ .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--Y 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--C
Confidence 8876 46788877775 5556544 4444555566788999999887655 567888876 333333 33332 2
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
..+.+|||||++|+..+. .+.+..|.+||+.+|+.. .+..+.
T Consensus 330 -----~~~~~~SpDG~~Ia~~s~--------~~g~~~I~v~d~~~g~~~-~lt~~~------------------------ 371 (427)
T PRK02889 330 -----NTSPRISPDGKLLAYISR--------VGGAFKLYVQDLATGQVT-ALTDTT------------------------ 371 (427)
T ss_pred -----cCceEECCCCCEEEEEEc--------cCCcEEEEEEECCCCCeE-EccCCC------------------------
Confidence 235789999999997664 122347999999888754 443222
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
...++.|+|||+.|+.++.++
T Consensus 372 -----------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -----------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----------CccCceECCCCCEEEEEEecC
Confidence 234679999999988777554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=153.05 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=182.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc---cceeee-ccccCceEEEEeCCCC
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG---FALFES-ESLKWPGFVEFDDVNG 198 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~---~~lf~~-~~~~~~~~V~Fs~~nG 198 (474)
||. +|...|+.++|.|---.||+++ .| +++++|.++..+.... .++++. .|-+.|-+|..+ +||
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~s----ed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITAS----ED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEec----cc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 454 6888999999998888899976 66 6888999833222111 134443 366777789996 899
Q ss_pred eEEEEecCCCcEEEeecC-------CCe---EEEEE--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 199 KVLTYSAQDSIYKVFDLK-------NYT---MLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~-------tg~---~l~tl--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
+.+-+|+.|++|+.|++. +|. +..++ +.+.||.+++|+ -..|+++ +.|+|+++|+...... .+
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cc
Confidence 999999999999999543 121 22233 457899999995 4456665 6689999999865554 55
Q ss_pred EeecC--cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-------CCceEEEEEcCCCcEEEEEc-CCc
Q 011970 266 FYHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRT 335 (474)
Q Consensus 266 l~~h~--~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h-------~~~v~sv~Fspdg~llaS~s-D~t 335 (474)
|..-. ..=.+|+|..-..-.+++...-+--.|.|+..+.-+.++... ...+.-++..|.+.+..++- |++
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 54221 122566764311112222223333445555555555443211 13455677789999888888 999
Q ss_pred EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 336 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 336 IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|++.|. +|+++.+...|... |.+++|-|+|=+|+|++. |+.|++|.+..-.|+....+|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 999999 59999999999886 689999999999999987 9999999998999999888886
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=131.68 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=92.5
Q ss_pred cCCceEEEEEcCCCcEEEEE--c-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 312 EFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~--s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
+...|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+ . ++.|.|||+|++||.++. +.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~wsP~G~~l~~~g~--------~n 122 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWSPDGRFLVLAGF--------GN 122 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEECCCCCEEEEEEc--------cC
Confidence 33469999999999987654 4 78999999999999998643 2 588999999999999875 23
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC---
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR--- 465 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~--- 465 (474)
..|.|.+||+.+.+++.+.+ |. .++.++|||||++|+|+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~-~~-----------------------------------~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFE-HS-----------------------------------DATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred CCcEEEEEECCCCEEeeccc-cC-----------------------------------cEEEEEEcCCCCEEEEEEeccc
Confidence 45889999999999998864 33 5788999999999999874
Q ss_pred ---CCcEEEcc
Q 011970 466 ---HGLVHVWS 473 (474)
Q Consensus 466 ---DgtVklWd 473 (474)
|+.++||+
T Consensus 167 ~~~dng~~Iw~ 177 (194)
T PF08662_consen 167 LRVDNGFKIWS 177 (194)
T ss_pred eeccccEEEEE
Confidence 88999997
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=142.46 Aligned_cols=239 Identities=10% Similarity=0.097 Sum_probs=143.1
Q ss_pred eeccEEEEeeCCC--eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 96 AARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 96 ~s~~~las~s~dg--tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
|++.+.+.....+ .+.++|. .|+..+.+.. +.+.+.+.+|||||+.|+.++.. ..+ ..+.+|++.+|+.
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~-~~~------~~I~~~dl~~g~~ 232 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFE-SKK------PVVYVHDLATGRR 232 (427)
T ss_pred cccEEEEEEccCCccEEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEcc-CCC------cEEEEEECCCCCE
Confidence 4455555544433 4555665 3777666664 55779999999999999987632 233 4688999988875
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEE-ecCCCcEEEeec--CCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCc
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDL--KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV 250 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS-~s~D~tiKlWdl--~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~ 250 (474)
. .+... -......+|| |||+.|+. .+.|+...||.+ .++. +..
T Consensus 233 ~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~--------------------------- 278 (427)
T PRK02889 233 R---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRR--------------------------- 278 (427)
T ss_pred E---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEE---------------------------
Confidence 2 12211 1233468998 79988874 566776666653 2221 111
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CCCceEEe-ccccCCceEEEEEcCCCc
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEV-SRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv--~tg~~~~~-l~~h~~~v~sv~Fspdg~ 326 (474)
+..+...+..+.|+ |+|.+|+..+ .++..+||.+ .+++..+. +.+ ......+|||||+
T Consensus 279 ---------------lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~SpDG~ 340 (427)
T PRK02889 279 ---------------LTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--SYNTSPRISPDGK 340 (427)
T ss_pred ---------------CCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--CCcCceEECCCCC
Confidence 21111222334454 4555555544 3455666643 45554333 222 2233568999999
Q ss_pred EEEEEc-CC---cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 327 LFLTFR-NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 327 llaS~s-D~---tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.++..+ ++ .|.+||+. |+.. .+..+. + ..+..|+|||+.|+..+.. +....+.+-++ +|
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~-~-----~~~p~~spdg~~l~~~~~~--------~g~~~l~~~~~-~g 404 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTDTT-R-----DESPSFAPNGRYILYATQQ--------GGRSVLAAVSS-DG 404 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccCCC-C-----ccCceECCCCCEEEEEEec--------CCCEEEEEEEC-CC
Confidence 998766 43 69999996 6543 444332 2 2568999999999987751 11233555565 67
Q ss_pred eEEEEecCCC
Q 011970 402 KCLAKINATN 411 (474)
Q Consensus 402 ~cl~tl~gH~ 411 (474)
+..+.+..+.
T Consensus 405 ~~~~~l~~~~ 414 (427)
T PRK02889 405 RIKQRLSVQG 414 (427)
T ss_pred CceEEeecCC
Confidence 7777776554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-12 Score=132.74 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=137.6
Q ss_pred ceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl-~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
+.+.+|| |||+.||+.+.+ .+|.+||+++|+..... ....+..++|||++ .|+..........|.+||+.+|+.
T Consensus 192 ~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 192 ILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred eecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 4467898 799999988754 48999999998754322 23456779999854 565443333445799999998865
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeC-CC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CC---c
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---T 335 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~---t 335 (474)
. .+..+........|+ |++.+|+..+. ++ .|.++|+.+++..++ ..+......++|+|||++++..+ ++ .
T Consensus 271 ~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 271 T-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred E-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 4 344443445567887 67888887653 33 577788888876544 33445667789999999998877 54 7
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|.+||+.+...+.+..+.. .....|+|||+.|+..+.. +....+.+.+ .+|+....+..+
T Consensus 348 i~~~d~~~~~~~~l~~~~~------~~~p~~spdg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 348 IAVMDLDGGGERVLTDTGL------DESPSFAPNGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred EEEEeCCCCCeEEccCCCC------CCCceECCCCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 8899986333344443221 2456899999999887651 1123566666 467777776544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=124.40 Aligned_cols=168 Identities=15% Similarity=0.239 Sum_probs=103.6
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEE--EecCCCc
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDSI 209 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La--S~s~D~t 209 (474)
-.+.|+|+|+.|+.-.....+.=..-......|+.+.. +.......+-. -+.|..++|+ |+|+.+| +|..+..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~Ws-P~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWS-PNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEEC-cCCCEEEEEEccCCcc
Confidence 46778888887754332000110001112345555522 22222212211 2246699998 7998754 4567889
Q ss_pred EEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 210 YKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|.|||++ ++.+.++....+..|.||| |.++|+++.+...+.|.+||+++.+++.+++
T Consensus 85 v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------------------- 142 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------------------- 142 (194)
T ss_pred cEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---------------------
Confidence 9999996 8888999888889999998 5666665433323445555555544444433
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-------CCcEEEEeCCCcEEEEec
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-------D~tIklWd~~G~ll~tl~ 350 (474)
|. .+..++|||||++|+|+. |+.++||+++|+++....
T Consensus 143 -----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 143 -----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred -----------------------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 21 246778888888888763 788899999998876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-11 Score=127.23 Aligned_cols=306 Identities=14% Similarity=0.125 Sum_probs=189.4
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
+++...++.+.+.|..|++.+.++.... +.--.+.|+|||+++..++. | ..+.++|+.+++..++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~r----d------g~vsviD~~~~~~v~~i~-- 75 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANR----D------GTVSVIDLATGKVVATIK-- 75 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEET----T------SEEEEEETTSSSEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcC----C------CeEEEEECCcccEEEEEe--
Confidence 3567789999999999999999998633 44456889999999887662 3 478899999999755322
Q ss_pred eeccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCce-EEEEecCCCC
Q 011970 181 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPGIM-LLIFNRSSSH 249 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSpg~~-la~~s~~s~D 249 (474)
. -..+..+++| +||++|+.+. .++++.|+|.+|.+.+++++. ..|.+|..+|+.. ++..-.. -
T Consensus 76 -~--G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--~ 149 (369)
T PF02239_consen 76 -V--GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--T 149 (369)
T ss_dssp ----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--T
T ss_pred -c--CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--C
Confidence 1 2346689998 7999887654 689999999999999998863 2577888897544 4433222 2
Q ss_pred ccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc----ccCCceEEEE--
Q 011970 250 VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR----TEFMTPSAFI-- 320 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~----~h~~~v~sv~-- 320 (474)
..|-+-|..+.+.+. .+. ....-....|. |++.+++++ ...+.|-++|.++++...... .|......+-
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 345555766655443 332 11222445554 677777775 467799999999998765431 1332222221
Q ss_pred -------EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 321 -------FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 321 -------Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+-.+...++.- ...+.+||.. .+.+++++..... --+.-+||++++...... ....+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 122333333333 5567789985 9999999876553 357789999999986221 12258
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC--cE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG--LV 469 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg--tV 469 (474)
+|-++|..|-+.+.+|..... ..+.-+.|+|||++++-...|+ .|
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred eEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecCCCEE
Confidence 999999999988888864431 1477899999999877655433 58
Q ss_pred EEcc
Q 011970 470 HVWS 473 (474)
Q Consensus 470 klWd 473 (474)
.++|
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
... |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=141.75 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=128.2
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.++.+++|.+.+.+++++++.|..|+||-+..++ .+.+|..|...|..|-|+|+|.+|||++ +|.|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5788889875544588889999999999887643 3456889999999999999999999999 88999998
Q ss_pred CC--------C-----c----EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 341 FR--------G-----E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 341 ~~--------G-----~----ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.. . + ....+.+|..- +..++++||+.+++++|. |.++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 54 2 1 34578888876 567999999999999987 99999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
++.+.+|.. .|..++++|-+|+++|=|.|...+
T Consensus 158 ~~~~~dh~~----------------------------------yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHEH----------------------------------YVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeecccccc----------------------------------ccceeecchhhhhhhhhccCcccc
Confidence 999999996 888999999999999988887443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=140.22 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=143.8
Q ss_pred EEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 230 QEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
..|||++ |..+++. +.|+++|+|+...=+.+..+..|...|..++|+ ||++.|++-+.| ..+|||+++|.+++.
T Consensus 148 k~vaf~~~gs~latg---g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG---GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeec---cccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 5799996 6777775 568999999977766666666677899999998 566666666888 999999999988876
Q ss_pred cc--ccCCceEEEEEcCCC-----cEEEEEc-CCcEEEEeCC---C----cEEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 309 SR--TEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 309 l~--~h~~~v~sv~Fspdg-----~llaS~s-D~tIklWd~~---G----~ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
+. .-.....++-|+-|+ .+++.-. -+.|.+||+. | ..-+-...|.. +.+++.|+||+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s------iSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS------ISSLAVSDDGKFL 296 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc------ceeEEEcCCCcEE
Confidence 54 223345567799888 4444444 5577787762 3 23333334433 6899999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 452 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 452 (474)
|-|+. ||.|-|.+..+=|+++-. ++|.. -|++|.
T Consensus 297 AlGT~-----------dGsVai~~~~~lq~~~~vk~aH~~----------------------------------~VT~lt 331 (398)
T KOG0771|consen 297 ALGTM-----------DGSVAIYDAKSLQRLQYVKEAHLG----------------------------------FVTGLT 331 (398)
T ss_pred EEecc-----------CCcEEEEEeceeeeeEeehhhhee----------------------------------eeeeEE
Confidence 99987 999999999888888766 44654 899999
Q ss_pred EcCCCCEEEEEcCCCcEEE
Q 011970 453 YDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 453 fSpDg~~LaSgs~DgtVkl 471 (474)
|+||.+.+++-|.|.+++|
T Consensus 332 F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EcCCcCcccccccCCceeE
Confidence 9999999999999998876
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-14 Score=144.88 Aligned_cols=331 Identities=11% Similarity=0.122 Sum_probs=224.5
Q ss_pred chhhhhhhcccccccCCcccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEE
Q 011970 32 VNSVKKLQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCA 111 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtik 111 (474)
-+++..|-.||+++.+.=...+..++-+-+.+.|++-+..|.+-+....|+.. |+.|+|+|.|..+-
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~-------------Gd~l~SgSDD~~vv 167 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQR-------------GDVLASGSDDLQVV 167 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeeccc-------------CceeeccCccceEE
Confidence 45678888999995422111223334445567788888888887777777666 99999999999999
Q ss_pred eeeccccceeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccCc
Q 011970 112 AFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 112 lW~~~tg~~l~~l~g~~~~~i~sv~fspd--g~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~~ 188 (474)
+||..+++....+.++|.+.|.---|=|+ -++|++.+++ +++++-.| .+|++.++..+-.++ +++
T Consensus 168 ~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----------gqvr~s~i~~t~~~e~t~rl~~h~--g~v 235 (559)
T KOG1334|consen 168 VWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----------GQVRVSEILETGYVENTKRLAPHE--GPV 235 (559)
T ss_pred eehhhccCcccccccccccchhhhhccCCCCCcCceecccc----------Cceeeeeeccccceecceeccccc--Ccc
Confidence 99999988766666667665555456444 5678886644 46666655 677776555555553 333
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCcc--EEEEecCCCeEEEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVP--LKILSIEDGTVLKVF 266 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~t--IkLWdi~tG~~L~tl 266 (474)
.-++-.|..-+.|.|++.|+.++=.|+.++.....+. + -..|.. |.|.+|
T Consensus 236 hklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----------------c--r~~~~~~~v~L~~I--------- 287 (559)
T KOG1334|consen 236 HKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----------------C--READEKERVGLYTI--------- 287 (559)
T ss_pred ceeeecCCCCCcccccccccceeeeeeccCCccceee-----------------e--eccCCccceeeeeE---------
Confidence 3444444344678899999999999987655322221 0 011112 322222
Q ss_pred eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-----------eEEecc-ccCCceEEEEEc-CCCcEEEEEcC
Q 011970 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-----------LMEVSR-TEFMTPSAFIFL-YENQLFLTFRN 333 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-----------~~~~l~-~h~~~v~sv~Fs-pdg~llaS~sD 333 (474)
+..|.....+++++.|.-++++|.+.-. |-..+. .....|..++|+ ..+.+|||-+|
T Consensus 288 ----------a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD 357 (559)
T KOG1334|consen 288 ----------AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND 357 (559)
T ss_pred ----------ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence 1112212355556777777777766422 111111 223467899999 66777777679
Q ss_pred CcEEEEeCC---C----------cEEEE-eccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 334 RTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 334 ~tIklWd~~---G----------~ll~t-l~gH~~~~~~~~v~sv-afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
--|-|.+-. | .++.- ++||.+-. .|..| .|-|...|++|||. =|-|=||+-
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~---TVKgVNFfGPrsEyVvSGSD-----------CGhIFiW~K 423 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR---TVKGVNFFGPRSEYVVSGSD-----------CGHIFIWDK 423 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhccccccc---ccceeeeccCccceEEecCc-----------cceEEEEec
Confidence 999999863 6 34444 89998753 24444 56899999999986 688999999
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+|+.|+-++|... .|.+|.=+|--..|||.+-|.-||||-
T Consensus 424 ~t~eii~~MegDr~----------------------------------VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 424 KTGEIIRFMEGDRH----------------------------------VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred chhHHHHHhhcccc----------------------------------eEeccCCCCCCchhhccCCccceeeec
Confidence 99999999998764 789999999999999999999999994
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=130.30 Aligned_cols=235 Identities=10% Similarity=0.087 Sum_probs=150.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.++|.+ |.....+.. +.+.+.+..|||||+.|+.++... .. ..+.++++.+|+.. .+... -+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~~---~l~~~--~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRRE---QITNF--EGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCEE---EccCC--CCCc
Confidence 46667766 555566654 457789999999999999876322 22 46778898888751 12221 1233
Q ss_pred eEEEEeCCCCeEEEE-ecCCC--cEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKVLTY-SAQDS--IYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS-~s~D~--tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...+|| |||+.|+. .+.++ .|.+||+++++... +. ...+.+..|||+ ..++..+.......|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 368998 79998874 44444 58888999887543 33 234567899985 4455443323345688899999885
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--c
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 335 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--t 335 (474)
.. +...........|+ |++.+++... .++ .|.+||+.+++........ ......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 43 22112333456776 6788887765 333 5788999999865543322 223458999999998776 33 4
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
|.+.+++|+..+.+..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66777778777666644333 34555665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-12 Score=130.03 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=135.6
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
...|.++|...+. ...+. ...+.+.+|||+ ..||..........|.+||+++|+..... .+...+..+.|+ |++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~s-pDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFS-PDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEEC-CCC
Confidence 3457777775443 33333 346899999984 45555443333467999999998764332 333456678887 677
Q ss_pred CeEEEE-eCC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCCcEEEEeccCCCCc
Q 011970 284 EKLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 356 (474)
Q Consensus 284 ~~ll~~-~~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G~ll~tl~gH~~~~ 356 (474)
..|+.. +.+ ..|.+||+.+++..+.. .+........|+|||+.|+..+ ++ .|-+||+.+...+.+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 777764 444 46889999988765553 3434445678999999887655 33 566777764334445444333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
...++|+|||++|+..+.. +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 3578999999999987651 1123799999987654 3333322
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.....+|+|||+.|+.++.++.
T Consensus 366 ----------~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 366 ----------LDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred ----------CCCCceECCCCCEEEEEEeCCC
Confidence 2234689999999888876653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-11 Score=126.62 Aligned_cols=315 Identities=15% Similarity=0.253 Sum_probs=214.4
Q ss_pred EEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEE---eecCCCccceeeeEEEEe
Q 011970 91 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVS---VYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 91 V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S---~~~s~d~s~Lk~~~~~iw 166 (474)
+....++ +-.+++.+.++.+++++..++..+-+... . .++.+-|||-|.+|-|== .++.. +-..-.+.+|
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP~g~yL~T~e~~~i~~~~---~~~~pn~~v~ 110 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSPKGNYLLTWEPWAIYGPK---NASNPNVLVY 110 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecccccccccccccccccCC---CCCCCceeee
Confidence 4556666 77788999999999999999854444443 2 489999999999986511 11111 1223455688
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCC---ceEEE
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKISPG---IMLLI 242 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~~~V~~vafSpg---~~la~ 242 (474)
++.+|.....+..-. .-+| ...|+ +|..+ +.==..+.+.++++.+-+ ....|+...|...++||| ..+|+
T Consensus 111 ~vet~~~~s~~q~k~--Q~~W--~~qfs-~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKM--QNGW--VPQFS-IDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred eeccceehhheehhh--hcCc--ccccc-cchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence 888866532211111 1336 78898 46533 322235679999987644 445667778999999987 57787
Q ss_pred EecCCC--CccEEEEecCCCeEE-----EEEeecCcceeEEEEE-ecCC-CeEEEEe--CC---------CcEEEEECCC
Q 011970 243 FNRSSS--HVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFI-EQFN-EKLLVKQ--EN---------ENLQILDVRN 302 (474)
Q Consensus 243 ~s~~s~--D~tIkLWdi~tG~~L-----~tl~~h~~~v~~V~F~-~~~~-~~ll~~~--~D---------~tIkIWDv~t 302 (474)
+-+.+. -..+|||...-+..- ++|- ...+|.|. .+-+ ..|+..+ .| .++.+.++++
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 766532 235999987522221 2221 12334442 1222 2333333 34 4788999884
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
-.+.--|. ..+.|.++.|+|.|+-|+... =-+|.|.|++|+.+..|-. +. =|.++|+|.|++|+-++.
T Consensus 261 ~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gp-----RN~~~fnp~g~ii~lAGF- 331 (566)
T KOG2315|consen 261 ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GP-----RNTAFFNPHGNIILLAGF- 331 (566)
T ss_pred ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CC-----ccceEECCCCCEEEEeec-
Confidence 44443343 456999999999998887653 7799999999999988742 22 278999999999999887
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 459 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~ 459 (474)
+---|.|.+||+.+-||+.++++-.. +-+.|+|||++
T Consensus 332 -------GNL~G~mEvwDv~n~K~i~~~~a~~t------------------------------------t~~eW~PdGe~ 368 (566)
T KOG2315|consen 332 -------GNLPGDMEVWDVPNRKLIAKFKAANT------------------------------------TVFEWSPDGEY 368 (566)
T ss_pred -------CCCCCceEEEeccchhhccccccCCc------------------------------------eEEEEcCCCcE
Confidence 33468999999999999999987652 34899999999
Q ss_pred EEEEc------CCCcEEEcc
Q 011970 460 IYTGN------RHGLVHVWS 473 (474)
Q Consensus 460 LaSgs------~DgtVklWd 473 (474)
++|+. .|+-+|||+
T Consensus 369 flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEEEeccccEEecCCeEEEE
Confidence 99887 388999997
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-11 Score=135.41 Aligned_cols=324 Identities=11% Similarity=0.118 Sum_probs=205.1
Q ss_pred EEee-ccEEEEeeCCCeEEeeeccccc---eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 94 IVAA-RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 94 i~~s-~~~las~s~dgtiklW~~~tg~---~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
|++. +-.++...++..+-+|+..++. +.+-....|...+.++++||++..+|++- .| ..+.+|. .
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d----~d------GrI~vw~-d 234 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD----SD------GRILVWR-D 234 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec----cC------CcEEEEe-c
Confidence 4444 3334555667777788877644 11223334666789999999999998754 33 3588887 3
Q ss_pred cC-C-CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEec
Q 011970 170 RG-K-PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNR 245 (474)
Q Consensus 170 ~G-~-~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~ 245 (474)
-| + -..+..+|.- |-.-+..++|+ +||-+|.||+..+..-+|.+.|++ .+-|+ +..|..+.+||++-+.+..
T Consensus 235 ~~~~~~~~t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~- 310 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV- 310 (792)
T ss_pred cccccccccceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE-
Confidence 34 1 1111223332 22346689999 799999999999999999999988 33344 6789999999865443332
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcc-----------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-----
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----- 309 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~-----------v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l----- 309 (474)
-.|..|.|....+=+...+..|.... ...+.+. |.-..++--+..++||+||+.+.+.+..+
T Consensus 311 -~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 311 -LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred -ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 34888888877665665555543222 2344444 34466777789999999999987654321
Q ss_pred c------ccCCceEEEEEcCCCcEEEEEc---------CC--cEEEEeCCCc-----EEEEeccCCCCcCCCCeeEEEEC
Q 011970 310 R------TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE-----LVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 310 ~------~h~~~v~sv~Fspdg~llaS~s---------D~--tIklWd~~G~-----ll~tl~gH~~~~~~~~v~svafS 367 (474)
. -+...+.+++++-.|+.++|.- |+ .+|.|-..+. |.+... .+|.++.|-.+.++
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~---~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN---NPHGNAFVATIFLN 465 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe---cCCCceeEEEEEec
Confidence 1 1234577888888899999852 33 5678987543 222222 23344455556565
Q ss_pred CCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccccccc
Q 011970 368 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 446 (474)
Q Consensus 368 pDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 446 (474)
|-.. ..++++. ||.+|||-+..-+-+.+ |. ..|.-...-.++-.
T Consensus 466 ~~rs~~~vta~~-----------dg~~KiW~~~~~~n~~k---~~---------------------s~W~c~~i~sy~k~ 510 (792)
T KOG1963|consen 466 PTRSVRCVTASV-----------DGDFKIWVFTDDSNIYK---KS---------------------SNWTCKAIGSYHKT 510 (792)
T ss_pred CcccceeEEecc-----------CCeEEEEEEecccccCc---Cc---------------------cceEEeeeeccccC
Confidence 5554 6777655 99999998732221111 11 00110000012233
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+++++||.|| .|.+.|.|++|-+||
T Consensus 511 ~i~a~~fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 511 PITALCFSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cccchhhcCCC-cEEEEecCCEEEEec
Confidence 78999999999 566778899999998
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-11 Score=130.42 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=149.8
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.++|.. |...+.|.. ..+.+.+..|||||+.|+.++... .. ..+.++++..|+.. .+.... ...
T Consensus 199 ~l~i~d~d-G~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~~---~lt~~~--g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVRE---KVTSFP--GIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeec-CCCcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EecCCC--CCc
Confidence 55666755 544455553 457789999999999999876422 22 46778888887741 122111 122
Q ss_pred eEEEEeCCCCeEEEE-ecCCCc--EEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEE
Q 011970 189 GFVEFDDVNGKVLTY-SAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS-~s~D~t--iKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
...+|| |||+.|+. .+.++. |.++|+++++...... ...+.+.+|||++ .++..+.......|.++|+++|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 368898 79998876 455664 7777988887533222 2356789999854 5554433233446888899888764
Q ss_pred E-EEeecCcceeEEEEEecCCCeEEEEe-CCCcEE--EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--c
Q 011970 264 K-VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 335 (474)
Q Consensus 264 ~-tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIk--IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--t 335 (474)
+ ++.+ ......+|+ |++++|+..+ .++..+ ++|+.+++...+..+. ......|+|||+.++-.+ ++ .
T Consensus 344 ~Lt~~g--~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 344 RLTFEG--EQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EEecCC--CCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 4 2332 334567776 6788887764 455444 5788888865443332 223457999999888765 43 3
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
+.+++.+|...+.+..+... +...+|||
T Consensus 419 l~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66778889888888766543 34566776
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-11 Score=117.22 Aligned_cols=193 Identities=12% Similarity=0.203 Sum_probs=131.7
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe------EEEEEc---------CCcEEEEEEcC--CceEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------MLYSIS---------DKHVQEIKISP--GIMLLIFNRSS 247 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~------~l~tl~---------~~~V~~vafSp--g~~la~~s~~s 247 (474)
-+.+..++|. | ..|.||+ ||.||=|--+.-. .+..+. --.|.++-.-| +..+. + +
T Consensus 62 dgpiy~~~f~--d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-A---g 133 (325)
T KOG0649|consen 62 DGPIYYLAFH--D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-A---G 133 (325)
T ss_pred CCCeeeeeee--h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-e---c
Confidence 3445567775 2 3566655 4777777533211 111110 12456666666 44433 3 4
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---------ccC-CceE
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---------TEF-MTPS 317 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---------~h~-~~v~ 317 (474)
+|+.+.-||+|+|+..++|+||++.+-+|.-- ..++++++|++|||+||||.+|++|++++. .|. .|+-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 58999999999999999999999999999863 347899999999999999999999987642 222 3455
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 318 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 318 sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+++- +...|++|.-....||+++ -|+.++|. +| |.-+.| +.+.+++++. -+.|+
T Consensus 213 ala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~--------v~~v~F--~~d~vl~~G~-----------g~~v~ 269 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR--------VHLVDF--VDDCVLIGGE-----------GNHVQ 269 (325)
T ss_pred EEec--cCceEEecCCCceeEEeccCCCceEEEecccc--------eeEeee--ecceEEEecc-----------cccee
Confidence 5543 4557888877788999995 77777664 44 456777 4555666543 67899
Q ss_pred EEeCCCCeEEEEecCC
Q 011970 395 VSSILTGKCLAKINAT 410 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH 410 (474)
-|.+ .|..-+.+..-
T Consensus 270 ~~~l-~Gvl~a~ip~~ 284 (325)
T KOG0649|consen 270 SYTL-NGVLQANIPVE 284 (325)
T ss_pred eeee-ccEEEEeccCC
Confidence 9985 78777766553
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=128.49 Aligned_cols=325 Identities=16% Similarity=0.226 Sum_probs=220.3
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCC--Cccceeee---
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD--NFSSLKCR--- 161 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~--d~s~Lk~~--- 161 (474)
-+|..+.+| |.+||+ ++-.-|.+|.-..+-.+..+. |.+ |+-+-|||+|++|.|=+.-.-. +....+.+
T Consensus 33 ~p~~~~~~SP~G~~l~~-~~~~~V~~~~g~~~~~l~~~~--~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 33 WPVAYVSESPLGTYLFS-EHAAGVECWGGPSKAKLVRFR--HPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cchhheeecCcchheeh-hhccceEEccccchhheeeee--cCC-ceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 345666666 666665 566678899866654444443 434 8999999999999986532220 11122222
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE----EEEEcCCcEEEEEEcCC
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKHVQEIKISPG 237 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~----l~tl~~~~V~~vafSpg 237 (474)
...+||+..|.+..++..-....++|| .+.|+ -|.+++|--. ...++|.++ |+.+ .+.+.-..|.+..|||+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 488999999998665443333335665 57898 6788888763 346889997 5553 23444568999999985
Q ss_pred ---ceEEEEecC--CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE------e-----CCCcEEEEECC
Q 011970 238 ---IMLLIFNRS--SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVR 301 (474)
Q Consensus 238 ---~~la~~s~~--s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~------~-----~D~tIkIWDv~ 301 (474)
..||...+. +.+.+++||.|.-+..|.+-+--.-....+.+. +.|+.|+.- + ...++.|.+++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 345555433 446689999999888876544211122333444 346666642 1 24788999988
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
...+ .+..+-.+.|-.++|.|.++.|+.-+ +.++.+.|++|+++..+-... =|.+.|||.+++|+.++.
T Consensus 264 e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF 335 (561)
T COG5354 264 ERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGF 335 (561)
T ss_pred cccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecC
Confidence 4443 34335578999999999999998754 889999999999776554322 267999999999999876
Q ss_pred CCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 379 AEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 379 ~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
.---|.|-+||.... +|+.++.|-+. +-+.|||||
T Consensus 336 --------~nl~gni~i~~~~~rf~~~~~~~~~n~------------------------------------s~~~wspd~ 371 (561)
T COG5354 336 --------DNLQGNIEIFDPAGRFKVAGAFNGLNT------------------------------------SYCDWSPDG 371 (561)
T ss_pred --------CccccceEEeccCCceEEEEEeecCCc------------------------------------eEeeccCCc
Confidence 223588999998654 34547777552 336899999
Q ss_pred CEEEEEc------CCCcEEEccC
Q 011970 458 NEIYTGN------RHGLVHVWSN 474 (474)
Q Consensus 458 ~~LaSgs------~DgtVklWd~ 474 (474)
+.+.+.- .|..|+|||+
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred eEEEecCCCcccccCcceEEEEe
Confidence 9988763 5899999984
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=141.05 Aligned_cols=223 Identities=14% Similarity=0.147 Sum_probs=160.8
Q ss_pred ecCCCcEEEeecC-CCeE----EEEEc-CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCe-------EEEEEee
Q 011970 204 SAQDSIYKVFDLK-NYTM----LYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFYH 268 (474)
Q Consensus 204 ~s~D~tiKlWdl~-tg~~----l~tl~-~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~-------~L~tl~~ 268 (474)
++.-|.|-|++|. -|++ +-+|. +..|.++.+.| +.+||++ .+|+.|+||.++++- .-+.|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeec
Confidence 3456889999986 3553 22332 46899999997 7888886 568999999998763 3456788
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc-E
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-L 345 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~-l 345 (474)
|...|.++.|.|---+-|++++.|-||+|||+++++....+.||++.|..+||||||+++||-+ |++|++++-+ ++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999977677888899999999999999999989999999999999999999999999 9999999985 44 4
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeEEEEecCCCCCCCCccccCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKCLAKINATNCSPKVDDELGSS 423 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t--G~cl~tl~gH~~~~~~~~~~~~~ 423 (474)
++.=.|-.+. + ---|.|-=||++++..+. + .++...|-++|.++ +..|.+.-=... |
T Consensus 756 v~Eg~gpvgt-R---gARi~wacdgr~viv~Gf-d------k~SeRQv~~Y~Aq~l~~~pl~t~~lDva-p--------- 814 (1012)
T KOG1445|consen 756 VYEGKGPVGT-R---GARILWACDGRIVIVVGF-D------KSSERQVQMYDAQTLDLRPLYTQVLDVA-P--------- 814 (1012)
T ss_pred cccCCCCccC-c---ceeEEEEecCcEEEEecc-c------ccchhhhhhhhhhhccCCcceeeeeccc-C---------
Confidence 5433333221 1 123556669999887654 1 12245677777643 233333211110 0
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCcEEEcc
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWS 473 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~DgtVklWd 473 (474)
.+.=-.|++|... ++||-.|.+|.++.
T Consensus 815 -----------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 815 -----------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred -----------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 1111367888876 56888899988764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-11 Score=137.94 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=168.4
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----------------CcEEEEEEcC-CceEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKISP-GIMLLIFNRSS 247 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----------------~~V~~vafSp-g~~la~~s~~s 247 (474)
+.+|..|++++.+|.+.++.+..+.|++||+. |+.+..+.. +.-+.|+|.| ++.|.++..
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt-- 643 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT-- 643 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--
Confidence 57788899986678899999999999999975 555544421 1247899996 566666643
Q ss_pred CCccEEEEecCCCeEEEEEeec-----------------CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec
Q 011970 248 SHVPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS 309 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h-----------------~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l 309 (474)
..+.|+.+|..+|. +.+|.+- ...-+.|+|. ++++.+.++ ..++.|++||..++......
T Consensus 644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 34679999988765 4555321 1123578887 445666555 68999999999888754321
Q ss_pred --------c------ccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-CcEEEE-------------eccCC------
Q 011970 310 --------R------TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTS-------------FEDHL------ 353 (474)
Q Consensus 310 --------~------~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G~ll~t-------------l~gH~------ 353 (474)
. .....++.++|+|||+ ++++-+ +++|++||++ |+.... +-++.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 1234678899999987 666667 8999999995 542111 10010
Q ss_pred -CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC--CCCCccccCCCCCCcccc
Q 011970 354 -LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC--SPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 354 -~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~--~~~~~~~~~~~~~~~~~~ 430 (474)
..+ -..|+|+|||++.++-+. +++|++||..+|++. ++-+... ++++
T Consensus 802 ~l~~----P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~~G~~dG-------------- 851 (1057)
T PLN02919 802 LLQH----PLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGKAGFKDG-------------- 851 (1057)
T ss_pred hccC----CceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCCcCCCCC--------------
Confidence 011 158999999999888654 899999999887766 4444221 0000
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
......+.....|+++|||+.+++-+.+++|++||.
T Consensus 852 --------~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 852 --------KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred --------cccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 001122336778999999999999999999999984
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=141.64 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=166.8
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
|..+.|+ .||..|+-|+.-|-+-.+|..|+++...+. .+.|.+|+|- ..+++|+++. .-+.|+| ..|+.|+-
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 3467887 799999999999999999999999999887 4789999998 5788888753 5799999 68999998
Q ss_pred EeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR- 342 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~- 342 (474)
++.| .+|..+.|.| .-.||+ +++.|-++--||.+|+++..+......+....-.|-+-.+-.|- +|||.+|...
T Consensus 206 lk~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hhhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 8866 6799999985 345555 57999999999999999887777777777777789888888887 9999999996
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
-+.|..+-.|.+. |++|||.|+|+|+|+.+. |..+||||+..=..+.++..
T Consensus 283 kePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 283 KEPLVKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cchHHHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceeec
Confidence 7777777789987 799999999999999876 99999999987665555533
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=134.50 Aligned_cols=191 Identities=12% Similarity=0.096 Sum_probs=142.5
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKl 212 (474)
..|+|++||..|+++. .| .++|||+.++-+.. |++.+|-+-|..+.|| ||||.|||-+.| ..+|
T Consensus 148 k~vaf~~~gs~latgg----~d------g~lRv~~~Ps~~t~----l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG----TD------GTLRVWEWPSMLTI----LEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeeecc----cc------ceEEEEecCcchhh----hhhHhhcCccccceeC-CCCcEEEEecCC-ceEE
Confidence 7899999999999965 44 59999998877652 3444455667799998 799999999999 8999
Q ss_pred eecCCCeEEEEEc----CCcEEEEEEcCCc-----eEEEEecCCCCccEEEEecCCC---eEEEEEe--ecCcceeEEEE
Q 011970 213 FDLKNYTMLYSIS----DKHVQEIKISPGI-----MLLIFNRSSSHVPLKILSIEDG---TVLKVFY--HLLHRNKKVDF 278 (474)
Q Consensus 213 Wdl~tg~~l~tl~----~~~V~~vafSpg~-----~la~~s~~s~D~tIkLWdi~tG---~~L~tl~--~h~~~v~~V~F 278 (474)
|++++|.++.+.. +.....+.|+-+. ++|+. ....+.|++|++..- ..|+..+ .-...+.+++.
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~--~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAAS--QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEe--cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 9999998888775 2457789999544 34433 233344555544321 2222221 11135677776
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
+ ++|..++.|..||.|-|+++.+-++++. .+.|.+.|+.+.|+||.+.+++-+ |.++.|--+.
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 5 5677777799999999999999998876 567999999999999999999988 8888877764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-11 Score=130.87 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=179.3
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE--EEEEc------CCcEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIK 233 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~--l~tl~------~~~V~~va 233 (474)
.+-||+++.---. ...|.. ..-+..++|+|-+..+||.|..+|+|=+||+..+.. ...++ ...|..|.
T Consensus 223 ~~~vW~~~~p~~P--e~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP--ELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCCCCc--eEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 5778888655211 112332 334557899988899999999999999999986654 22222 34677766
Q ss_pred EcC---CceEEEEecCCCCccEEEEecCC------CeEEEEEe------ecCcceeEEEEEecCCCeEEEEeCCCcEEE-
Q 011970 234 ISP---GIMLLIFNRSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI- 297 (474)
Q Consensus 234 fSp---g~~la~~s~~s~D~tIkLWdi~t------G~~L~tl~------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI- 297 (474)
+-. +--+++. +.|+.|+.|++.. +.++.+.. .-...+..+.|.+-+...+++|.++|.|.-
T Consensus 299 W~~~~~~~~f~s~---ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSL---SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEE---ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 662 3345554 4489999998753 22222222 123456899998877889999999999976
Q ss_pred --EECCCCc-----eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 298 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 298 --WDv~tg~-----~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
++.+.+. .+.....|-+.|+++.++|-+..+..++ |-+||||.-. -..+..++.|... |.++++|
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWS 450 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWS 450 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEc
Confidence 3444333 2335677889999999999887766666 9999999964 5567788888775 6899999
Q ss_pred CCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCcccccccccccccccccc
Q 011970 368 SDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 444 (474)
Q Consensus 368 pDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (474)
|-- -.+|++.. ||.|.|||+..-.+ +.+.+-+.
T Consensus 451 ptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~--------------------------------- 486 (555)
T KOG1587|consen 451 PTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS--------------------------------- 486 (555)
T ss_pred CcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc---------------------------------
Confidence 975 45555543 99999999864332 22222221
Q ss_pred ccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 445 LEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 445 l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...+-+.++++|+.|+.|...|++++|+
T Consensus 487 -~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 487 -PALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred -cccceeecCCCCcEEEEecCCCcEEEEE
Confidence 1566788999999999999999999986
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-11 Score=125.39 Aligned_cols=205 Identities=10% Similarity=0.073 Sum_probs=135.3
Q ss_pred CceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.+.+|| |||+.||+.+.+ ..|.+||+.+|+...... ...+.+.+|||+ ..|+......++..|.+||+++|+
T Consensus 200 ~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 34578998 799999987754 368899999987543222 234567999985 456544333334468999999987
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-- 334 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~-- 334 (474)
.. .+..+......+.|+ |++.+++..+ .+ ..|.++|+.+++..+.... ........|||||+.++-.+ ++
T Consensus 279 ~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 279 LS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred eE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCce
Confidence 64 355444456677887 6788888765 33 3577778888886554221 12233567999999998765 33
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.|.+||+. |+. +.+.. ... .....|+|||+.|+-.+. .+....|.+.++ +|+..+.|..+.
T Consensus 356 ~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~--------~~g~~~l~~~~~-~g~~~~~l~~~~ 417 (430)
T PRK00178 356 HVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATR--------QQGRGVLMLVSI-NGRVRLPLPTAQ 417 (430)
T ss_pred EEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEECcCCC
Confidence 57889986 554 44432 222 135689999999997764 122355778886 677666676543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-11 Score=137.11 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=169.3
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCC-----C--eE--EEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----Y--TM--LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-----g--~~--l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
.+..++-+++++-+++|||.|||||+||+.. + ++ .|...+..|..|.+.+ +..+|.+ +.|+.|++.+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGSVRVLR 1126 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCeEEEEE
Confidence 3446777778889999999999999999752 1 23 3333467899999996 7777776 5589999998
Q ss_pred cCC--Ce-----EEEEEeec--CcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCC
Q 011970 257 IED--GT-----VLKVFYHL--LHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE 324 (474)
Q Consensus 257 i~t--G~-----~L~tl~~h--~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspd 324 (474)
+.. +. +....+.+ ..-+.--+|...... .++.+-..+-|-+||+++..-+.+++ -..+.|++++.+|.
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence 865 21 11111111 111122222211223 34445678899999999876544432 23468999999999
Q ss_pred CcEEEEEc-CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 325 NQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
++.++.|. -|.+-+||++ +.++.+++- |..++ ..|+-.-+.|....+++++. +.-+-|-+||+.+|
T Consensus 1207 ~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i--~~v~~~~~~~~~S~~vs~~~---------~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPI--RHVWLCPTYPQESVSVSAGS---------SSNNEVSTWNMETG 1275 (1431)
T ss_pred ceEEEEecCCceEEEEEeecCceeecccCcccCCc--ceEEeeccCCCCceEEEecc---------cCCCceeeeecccC
Confidence 99999998 9999999998 999887762 22221 11333334455567777654 13678999999999
Q ss_pred eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 402 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|-.+|-..+.-|..-++.++.. +..+..+..+ ...+-.-+..+++|+.|..||.||.
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~--------------~~kp~~~~~~-~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSND--------------ARKPDSLAGI-SCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred cceEEEEcCCCCcchhhhccccc--------------CCCCCcccce-eeecccCCceeeecCCccceeeccC
Confidence 99999987643233223322221 1112222334 4556666668999999999999983
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-11 Score=135.23 Aligned_cols=275 Identities=12% Similarity=0.129 Sum_probs=188.0
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecC--CCceEEEEEE-eeCC-CEEEEEEeecCCCccceeeeEEEEeEe-ccC-
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFY-NKNN-DSLITVSVYASDNFSSLKCRSTKIEYI-RRG- 171 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~--~~~~i~sv~f-spdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G- 171 (474)
...|+++.+.-+|++||.+.|+++..+..+ ....|..+-| |-+. .+|+++| .| ..||||.- ..+
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~d------GvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS----SD------GVIRIWKDYADKW 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec----cC------ceEEEeccccccc
Confidence 788888888889999999999987644321 2234666655 5444 4567755 55 69999964 332
Q ss_pred -CCCCccceee--------eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEc-C-C
Q 011970 172 -KPDSGFALFE--------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-P-G 237 (474)
Q Consensus 172 -~~~~~~~lf~--------~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafS-p-g 237 (474)
++ .=..-|. ....+ --+++-..+|.+|++|. =+.|||||+..-++...+.- .-|.++.-+ + |
T Consensus 1146 ~~~-eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKP-ELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCc-eeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 0001111 11111 11455545687776664 78999999988778777762 346665555 3 6
Q ss_pred ceEEEEecCCCCccEEEEecCCCe---EEEEEeecCcc--eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--c
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--R 310 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~---~L~tl~~h~~~--v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~ 310 (474)
+++|++- .|+.|+++|.+.-. .+...+.|+.. |..+.|-++.-+.|++++.||.|++||++.......+ .
T Consensus 1222 n~i~AGf---aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGF---ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred ceEEEee---cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 7777763 38999999986533 34566677777 8888887544457999999999999999985322211 2
Q ss_pred ccC--C-ceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCc--CCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 311 TEF--M-TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 311 ~h~--~-~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~--~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.|- + ..+++...++-.++|||+-+.||||++.|+.+..+.-+.... +-..+.+++|+|-.-+||.|+.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~------- 1371 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA------- 1371 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC-------
Confidence 222 3 478888899999999999899999999999988777543310 0112578999999999998865
Q ss_pred ccCCCCeEEEEeCCC
Q 011970 386 MEGSAGSINVSSILT 400 (474)
Q Consensus 386 ~~s~DgtIklWdi~t 400 (474)
|.+|.|+....
T Consensus 1372 ----Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1372 ----DSTVSIYSCEK 1382 (1387)
T ss_pred ----CceEEEeecCC
Confidence 99999997543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-10 Score=113.87 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=168.5
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
+..++.|+.++.+|.+..+|..||+.+-..+. ......+++. ++..++.++ .+ ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~----~~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFVGT----EK------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEEEc----CC------CEEEEEECCCCcE-
Confidence 44588999999999999999999998866554 2232233333 455565533 33 4667778788986
Q ss_pred CccceeeeccccCce-EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEEE--EcC---CceEEEEecCC
Q 011970 175 SGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIK--ISP---GIMLLIFNRSS 247 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~-~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~va--fSp---g~~la~~s~~s 247 (474)
+|+......+. ..... ++++++ ++.|+.+..||+++|+.+...... ....+. -+| ++.++.. .
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~---~ 197 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG---F 197 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE---C
Confidence 34431101000 11222 455444 567999999999999998877532 211111 112 4455443 3
Q ss_pred CCccEEEEecCCCeEEEEEeecCc-------ce----eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLH-------RN----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~-------~v----~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
.++.+.-+|+++|+.+-+...... +. .+... .++.+.+++.++.+..||.++|+.+-..... ..
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~ 272 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SY 272 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--Cc
Confidence 357899999999998866541100 00 11111 2678888889999999999999876543311 11
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 317 SAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 317 ~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
...+. .++++++...|+.|..+|. +|+.+-..+.-.... ..+..+ .|..|+.++. ||.|.+
T Consensus 273 ~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~ 334 (377)
T TIGR03300 273 QGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHW 334 (377)
T ss_pred cCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEE
Confidence 12221 3555555545999999999 599886553211111 112222 4667777765 999999
Q ss_pred EeCCCCeEEEEecCCC
Q 011970 396 SSILTGKCLAKINATN 411 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~ 411 (474)
+|..+|+.+.+++.+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-11 Score=128.57 Aligned_cols=203 Identities=10% Similarity=0.113 Sum_probs=131.8
Q ss_pred ceEEEEeCCCCeEEEEecCCC---cEEEeecCCCeEEEEEc-CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~---tiKlWdl~tg~~l~tl~-~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
+.+..|| |||+.|++.+.+. .|.+||+.+|+...... .....+.+|||+ ..|+......+...|.++|+++|+.
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 4468998 7999999876532 58888999887532211 233457899984 4566543333333588899998875
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEec-cccCCceEEEEEcCCCcEEEEEc--CCcE
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR--NRTV 336 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspdg~llaS~s--D~tI 336 (474)
. .+..+......++|+ |++.+|+..+ .++ .|.++|+.+++..+.. .++ .....+|+|||+.|+..+ ++..
T Consensus 299 ~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 299 T-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred E-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCce
Confidence 4 444444456778887 6788887765 344 4556688888866542 333 234568999999987765 4544
Q ss_pred EE--EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 337 AV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 337 kl--Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+| +|+. |+. +.+.... . ..+..|+|||+.|+-.+. .+....|.++|. +|+..+.+..+.
T Consensus 375 ~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~--------~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 375 NIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTT--------YQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEECcCCC
Confidence 44 6775 554 4444331 1 134579999999987654 111345888886 888888887665
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-12 Score=139.78 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=183.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
.++|.+++ ---+.+++...+..|.-+.+.+-..+. .+.|+..+ ++..-++..+...+..++....+
T Consensus 17 ~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l---------~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 17 SDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKL---------LSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred cceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----ccccccee---------ccceEEEEEeecceeecchhhhh
Confidence 36666654 335778888888888777665544444 33333221 11122223333334444432210
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCc-----EEEEEEcCCceEEEEecCCCCcc
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKH-----VQEIKISPGIMLLIFNRSSSHVP 251 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~-----V~~vafSpg~~la~~s~~s~D~t 251 (474)
...-..|+..-.+.. +.+.++-...+..+-+||.+.+..+..+. ++. ..-+-+|+......++ +--+.
T Consensus 83 ---~~~~s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g--sv~~~ 156 (967)
T KOG0974|consen 83 ---IERFSDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG--SVFGE 156 (967)
T ss_pred ---hhhccccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec--ccccc
Confidence 011123443444432 34566667778889999999988776654 322 2335556544433332 33577
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE-eccccCCceEEEEEcCCCcEEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-~l~~h~~~v~sv~Fspdg~llaS 330 (474)
|-+|+..--+.-.-+.||.+.++++.|+ .++.++++.|+|.++|||++.+++-.. +.=+|+..||.+.|+|. .++|
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEE
Confidence 9999986222222478999999999998 568888889999999999999998776 66789999999999999 8999
Q ss_pred Ec-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 331 FR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 331 ~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
++ |-|.++|+.+|+.+..+++|...+ ++.++..++.-.++++.. |++||+||..+
T Consensus 234 ~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 99 999999999999999999999886 899999999999998765 99999999753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=117.90 Aligned_cols=183 Identities=11% Similarity=0.162 Sum_probs=140.8
Q ss_pred EEEEecCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec-CcceeE
Q 011970 200 VLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~--tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~v~~ 275 (474)
+||-.+.+. ..|+-+.+.+..+-.+. ...|.+|++.-..+++... ..|.|.||.+=++|+|++.- .+..--
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le-----e~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE-----ESIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEc-----ccEEEEecccceeehhhhccCCCccce
Confidence 555444444 48999988776443332 4679999999877766652 34999999999999999743 222234
Q ss_pred EEEEecC-CCeEEE-Ee-CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeC-CCcEEEEe
Q 011970 276 VDFIEQF-NEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNF-RGELVTSF 349 (474)
Q Consensus 276 V~F~~~~-~~~ll~-~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~-~G~ll~tl 349 (474)
.+|++.. |-+|+- ++ .-|.|.|||+.+-+...+...|...+-+++|+|+|.+|||+| .| .|||..+ +|+.+..|
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 5554322 236665 33 679999999999999999999999999999999999999999 66 5799999 59999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.--... +.+.+++|+||+++|++.|. -+||.|+.+.+-
T Consensus 213 RRG~~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 213 RRGTYP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred eCCcee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 865544 56899999999999998765 899999998543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.3e-11 Score=124.39 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=132.9
Q ss_pred cEEEeecCCCeEEE-EEcCCcEEEEEEcCCc-e--EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 209 IYKVFDLKNYTMLY-SISDKHVQEIKISPGI-M--LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 209 tiKlWdl~tg~~l~-tl~~~~V~~vafSpg~-~--la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
.|-+.|...++... |-....+.+-+|||++ . ++..+...+...|.+.++.+|+..+ +....+......|+ |||.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wS-PDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFS-PRKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEEC-CCCC
Confidence 45555665554322 2223456788999964 3 2223322333458888998886433 22223445678887 7888
Q ss_pred eEEEEe-C----CCcEEEEECCC---CceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeC--C--CcEEEEec
Q 011970 285 KLLVKQ-E----NENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--R--GELVTSFE 350 (474)
Q Consensus 285 ~ll~~~-~----D~tIkIWDv~t---g~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~--~--G~ll~tl~ 350 (474)
+|+..+ . |-.+++||+.+ ++..++..++.....+.+|||||+.|+..+ ++..+||.+ + |...+.+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 888754 2 34456688876 344555544444456789999999877655 677777754 3 34445555
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
.+... +....|||||+.|+..+.. .....|.+||+.+|++.. |.....
T Consensus 324 ~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~dl~~g~~~~-Lt~~~~------------------ 371 (428)
T PRK01029 324 KKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVYDLATGRDYQ-LTTSPE------------------ 371 (428)
T ss_pred cCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEEECCCCCeEE-ccCCCC------------------
Confidence 44433 3578899999999976541 124579999999988743 432221
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEE-EEcCCC--cEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHG--LVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~La-Sgs~Dg--tVklWd 473 (474)
.+.+..|+|||+.|+ ++..++ .|.+||
T Consensus 372 ----------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 372 ----------------NKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ----------------CccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 456689999999887 444333 455554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-10 Score=131.80 Aligned_cols=243 Identities=12% Similarity=0.185 Sum_probs=158.3
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc----------eeeeccccCceEEEEeCCCCe-EE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA----------LFESESLKWPGFVEFDDVNGK-VL 201 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~----------lf~~~~~~~~~~V~Fs~~nGk-~L 201 (474)
..|++++++..|..+ +. .+ +.|.++|. .|+....+. .+....+..|..|+|+ ++|. +.
T Consensus 571 ~gvavd~~~g~lyVa--Ds-~n------~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS--DS-NH------NRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEE--EC-CC------CeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEE
Confidence 468888864434332 22 33 56777773 455311000 0112245678899998 5655 45
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcC-------------------CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISD-------------------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~-------------------~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
++....+.|+++|+.++. +.++.+ +.=+.|+|+| ++.+.++. .+++.|++||..+|.
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCe
Confidence 555666889999988765 333321 1236799998 77776663 456889999998886
Q ss_pred EEEEEeec---------------CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc---------------
Q 011970 262 VLKVFYHL---------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--------------- 310 (474)
Q Consensus 262 ~L~tl~~h---------------~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~--------------- 310 (474)
+. ++.+. ...-..|+|+ +++++|.++ +.++.|++||+.++.......
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 54 33221 1123468887 566766665 688999999999876321110
Q ss_pred ------ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCC--C--------cCCCCeeEEEECCCCCEE
Q 011970 311 ------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--W--------HPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 311 ------~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~--~--------~~~~~v~svafSpDg~~L 373 (474)
.....+..++|+++|+++++-+ +++|++||.++..+.++.+... . ..+ ....|+++|||+++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG~ly 873 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENGRLF 873 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCCCEE
Confidence 1234578999999999999988 9999999997555555544221 0 000 13689999999998
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++-+. +++|++||+.+++.
T Consensus 874 VaDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECC-----------CCEEEEEECCCCcc
Confidence 87554 89999999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-11 Score=135.29 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=159.1
Q ss_pred cccccEEEEEee---ccEEEEeeCCCeEEeeeccc-------cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCc
Q 011970 86 MKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF 155 (474)
Q Consensus 86 ~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-------g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~ 155 (474)
-|++.|..++.+ +.++++||.|||||+||... .++.+|+.. ....+..|.+-++|+++|.++ .|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t----~D- 1119 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST----KD- 1119 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc----CC-
Confidence 378889999988 57999999999999999652 345556653 456799999999999999865 33
Q ss_pred cceeeeEEEEeEecc--CCC-CCcc----ceeeeccccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc--
Q 011970 156 SSLKCRSTKIEYIRR--GKP-DSGF----ALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-- 225 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~--G~~-~~~~----~lf~~~~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~-- 225 (474)
+.+.+-.|.. +.. ...+ .+-..+. .+.--+|....+. .|+++..-+-|-.||+.+-.-+.+++
T Consensus 1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~--vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGV--VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred -----CeEEEEEccccccccceeeeeecccccCCCc--eEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 3555555433 111 0000 0111111 1112244433455 79999999999999986655444543
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee-cCcceeEEEEEe--cCCCeEEEE-e-CCCcEEE
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIE--QFNEKLLVK-Q-ENENLQI 297 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v~~V~F~~--~~~~~ll~~-~-~D~tIkI 297 (474)
.+.|.+++++| +.+++++.+ -+.+-+||++=+.++....+ +..++..|...+ +.+...+++ + ..+-|-+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts---~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTS---RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccccceeEEEecCCceEEEEecC---CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 46799999999 777777743 47899999998888877663 335566655543 323455554 4 7899999
Q ss_pred EECCCCceEEeccccCC-------------------ceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 298 LDVRNAELMEVSRTEFM-------------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 298 WDv~tg~~~~~l~~h~~-------------------~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
||+.+|.|..++..-.. ......+..-+..+++|+ |..|+.||..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 99999998877643311 111122333345566666 9999999985
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=127.75 Aligned_cols=253 Identities=13% Similarity=0.157 Sum_probs=159.5
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEE--------eeCCCEEEEEEeecCCCc
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFY--------NKNNDSLITVSVYASDNF 155 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~f--------spdg~~Lis~S~~~s~d~ 155 (474)
|+...|..+..+ .+++++.+ |..+-+|+-.+......++- +++.|...-+ -...++++.+|.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG---- 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG---- 85 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhC-CcccCCccccccccccCCCCCcceEEEEcCCc----
Confidence 455666677777 55555555 44555554444544444443 3343433222 12244555555333
Q ss_pred cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEE
Q 011970 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIK 233 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~va 233 (474)
...|-. +.|+...... .|-+.+-+-.++ |||.-|.+++.||.||+|. .+|-+..++- ...|.+++
T Consensus 86 ------kf~il~-k~~rVE~sv~----AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 86 ------RFVILN-KSARVERSIS----AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ------eEEEec-ccchhhhhhh----hhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 222222 4555422211 123333344676 7999999999999999998 5666555664 35799999
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
+-|+.--+.+. .+.+..||=.-... +.+ ..+.|.+-|.+++|+++ ++.++++++|-..|||| ..|..+-+...|.
T Consensus 153 W~p~S~~vl~c-~g~h~~IKpL~~n~-k~i-~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~e 227 (737)
T KOG1524|consen 153 WAPNSNSIVFC-QGGHISIKPLAANS-KII-RWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWD-AQGANLFTSAAEE 227 (737)
T ss_pred ECCCCCceEEe-cCCeEEEeeccccc-cee-EEeccCcEEEEeecCcc-ccceeecCCceeEEeec-ccCcccccCChhc
Confidence 99843222232 13344555443321 232 34567788999999854 67888899999999999 5577777778899
Q ss_pred CceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.++.+++|.|| ++++-+|-+|.++=..+ .+ .|.++++||||..++.|+.
T Consensus 228 y~ITSva~npd-~~~~v~S~nt~R~~~p~----------~G-----SifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 228 YAITSVAFNPE-KDYLLWSYNTARFSSPR----------VG-----SIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cceeeeeeccc-cceeeeeeeeeeecCCC----------cc-----ceEEEEEcCCCceeecccc
Confidence 99999999999 88887776666622211 12 2688999999999998875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=124.61 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=174.7
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC--eEEEEecCC
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG--KVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG--k~LaS~s~D 207 (474)
..-.--.||+|++.|+... . ..+.|+...+|++... +. ++...+-.+.+.+..- -++-.++.|
T Consensus 17 ~~~~~avfSnD~k~l~~~~----~-------~~V~VyS~~Tg~~i~~---l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~ 81 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFLCT----G-------NFVKVYSTATGECITS---LE-DHTAPLTSVIVLPSSENANYLIVCSLD 81 (792)
T ss_pred ceecccccccCCcEEEEee----C-------CEEEEEecchHhhhhh---cc-cccCccceeeecCCCccceEEEEEecC
Confidence 3344557899999988743 3 4889999999999652 22 2444455677764333 356689999
Q ss_pred CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc----eEEEEecCCCCccEEEEe---cCCCeE-----EEEEe-------
Q 011970 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI----MLLIFNRSSSHVPLKILS---IEDGTV-----LKVFY------- 267 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~----~la~~s~~s~D~tIkLWd---i~tG~~-----L~tl~------- 267 (474)
|+|++||-..+.+++++. +-.|-+..+.|-. ..+..+ ..| .++.. .+.++. +.++.
T Consensus 82 G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s--~~~--~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 82 GTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS--VED--YSILTTFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee--ccc--ceeeeecccccccceeeeEeeeccccchhhh
Confidence 999999999999999987 3456665555411 111111 111 11111 111111 11111
Q ss_pred -ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE----EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 -~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~----~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
.|.- =..|.+. +. +.+..--.+..+.+|++..+.-. ..-..|+..+..++|||.++.+|++- ||.|.+|.-
T Consensus 158 ~~~~~-~~~I~~~-~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 158 KEHQE-PKSIVDN-NS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhhcC-CccEEEc-CC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 1111 1233332 21 22222235677889999885511 12355777788999999999999998 999999985
Q ss_pred CC-----cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 342 RG-----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 342 ~G-----~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
-| +-.+.|.=|... |++++||+||-+|.||+. .|-.-+|.+.|++ ++|-.-=+
T Consensus 235 ~~~~~~~~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg---- 292 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG---- 292 (792)
T ss_pred cccccccccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC----
Confidence 44 123455444443 799999999999999876 8999999999987 34322111
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
..|..+.+|||+...+.--+|+.|+|
T Consensus 293 -----------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 -----------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred -----------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 18999999999999888888999887
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-10 Score=112.68 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=134.4
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCC---------Ce-EEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecC
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~t---------g~-~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~ 258 (474)
-+.+ |-+|+|+.|+.+|+|-+..++. |+ .+.+. |+..|..++|.++ .|+++ +|+-|+=|--.
T Consensus 16 qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~----gdG~V~gw~W~ 89 (325)
T KOG0649|consen 16 QAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSG----GDGLVYGWEWN 89 (325)
T ss_pred HhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeec----cCceEEEeeeh
Confidence 4566 6799999999999999999863 22 12232 3568999999954 44543 36888876542
Q ss_pred CCeE---EEE---Ee--ec-----CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE-cCC
Q 011970 259 DGTV---LKV---FY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LYE 324 (474)
Q Consensus 259 tG~~---L~t---l~--~h-----~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-spd 324 (474)
.-.. ++. .. -| ...|.++-.-|+.|. ++.++.|+.+.-||+++|+..++++||++.+-+++- +..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 2111 111 11 11 134455555444444 444559999999999999999999999999999998 566
Q ss_pred CcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCC---cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 325 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~---~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+| ++||+ |||+||||. +++++++++--... -|+..-|--+.--|.++|++|. -..+-||++.
T Consensus 169 ~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg------------Gp~lslwhLr 235 (325)
T KOG0649|consen 169 GQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG------------GPKLSLWHLR 235 (325)
T ss_pred cc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC------------CCceeEEecc
Confidence 66 55777 999999999 59999988743221 0000112244455777888764 4678899999
Q ss_pred CCeEEEEec
Q 011970 400 TGKCLAKIN 408 (474)
Q Consensus 400 tG~cl~tl~ 408 (474)
+-+|..+|.
T Consensus 236 sse~t~vfp 244 (325)
T KOG0649|consen 236 SSESTCVFP 244 (325)
T ss_pred CCCceEEEe
Confidence 888777663
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-11 Score=121.33 Aligned_cols=243 Identities=14% Similarity=0.168 Sum_probs=173.4
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC------CeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t------g~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
+|.+-|..++|| .||+.||||+.|.-++||++.. .+++.... ..+|.+++|.-+.+.+.+ +..+++|-
T Consensus 54 ~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S--G~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS--GERWGTVI 130 (609)
T ss_pred hhccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec--CCCcceeE
Confidence 356777889998 6999999999999999999753 33333321 358999999987776655 46789999
Q ss_pred EEecCCCeEEEEEeec--CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEE--eccccCCceEEEEEcCCC-cE
Q 011970 254 ILSIEDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LME--VSRTEFMTPSAFIFLYEN-QL 327 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h--~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~--~l~~h~~~v~sv~Fspdg-~l 327 (474)
+-||++-+.|..+.+. .+.|..++-+|- +..+++.+.++.|-+||.+... .+. .+..-.....++-|.|.- .|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999999999853 246777776644 6677778899999999999765 222 122233455678899865 56
Q ss_pred EEEEc-CCcEEEEeCC--CcEEE------Eecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 328 FLTFR-NRTVAVWNFR--GELVT------SFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 328 laS~s-D~tIklWd~~--G~ll~------tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|++.+ -+-+-|||.+ ...|. .|.. .+.| .++-|+|+|..+.+--. -..=-++|
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~------M~~~~~~~G~Q~msiRR-----------~~~P~~~D 272 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW------MGSLWSPSGNQFMSIRR-----------GKCPLYFD 272 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhh------hheeeCCCCCeehhhhc-----------cCCCEEee
Confidence 67777 8889999974 22221 2221 2334 57889999998887432 33445889
Q ss_pred CCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 398 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 398 i~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.+.+|..--..|+ |+|+--+ ..+-++.|--|.. ++|||.|=-|++|.+
T Consensus 273 ~~S~R~~V~k~D~N--~~GY~N~-------------------------~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 273 FISQRCFVLKSDHN--PNGYCNI-------------------------KTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eecccceeEeccCC--CCcceee-------------------------eeeeeeeeeccee-eeccCcccceEEEec
Confidence 98878764434555 3333111 1677889987765 999999999999964
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=128.58 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=143.0
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EE----EEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEec
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML----YSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l----~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi 257 (474)
+..+.|+|-+..+||+||.|..||||.+.-|- .| ..+.. -.|..+.|+| +++|++++ .++++|||+
T Consensus 82 VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a----~g~v~i~D~ 157 (1012)
T KOG1445|consen 82 VTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA----HGSVYITDI 157 (1012)
T ss_pred eeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc----CceEEEEEc
Confidence 33556665556699999999999999997443 22 11122 2478899997 88888764 478999999
Q ss_pred CCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCc-eEEEEEcCCCcEEEEEc---
Q 011970 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMT-PSAFIFLYENQLFLTFR--- 332 (474)
Q Consensus 258 ~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~-v~sv~Fspdg~llaS~s--- 332 (474)
.|++.+..+.+|..-|.+.+|++ ||..|+++..|++|+|+|.+. ++.+++..+|... =+.++|.-+-..|+|.+
T Consensus 158 stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 158 STQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccch
Confidence 99999999999999999999986 344444467999999999885 7889988888753 33567765444444433
Q ss_pred --CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 333 --NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 333 --D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
-+.|++||.+ |..++|++=.... + |.-=-|.||-.+|+-+++ .+.+|....+...+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~st--G--vLiPl~DpDt~llfLaGK----------G~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSST--G--VLIPLYDPDTRLLFLAGK----------GTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeeccc--c--eEeeeecCCCceEEEecC----------CcceEEEEEecCCC
Confidence 4589999994 8888887733321 1 233457899999988776 37788888875443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=114.01 Aligned_cols=284 Identities=9% Similarity=0.024 Sum_probs=172.0
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|.+++..+.||.+.++|+.+++.++++..+ ..-+++++||||++|+.+.... .++.|.|.++.++.+.+
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEP---------GTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEET---------TEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCC---------CceeEeccccccceeec
Confidence 888999999999999999999999999864 3469999999999998765322 47888888887765543
Q ss_pred ceeeec---cccCceEEEEeCCCCeEEEEecCC-CcEEEeecCCCeEE--EEEc-CCcEEEEEEcCCc-eEEEEecCCCC
Q 011970 178 ALFESE---SLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTML--YSIS-DKHVQEIKISPGI-MLLIFNRSSSH 249 (474)
Q Consensus 178 ~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~D-~tiKlWdl~tg~~l--~tl~-~~~V~~vafSpg~-~la~~s~~s~D 249 (474)
+.-... .-..+..|..+ |.+...+..-.| +.|-+=|..+.+.+ ..+. +..-.+..|+|++ .++++... +
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~--s 193 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG--S 193 (369)
T ss_dssp E--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG--G
T ss_pred ccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc--c
Confidence 322210 01123456666 456644433333 44444476665533 3443 4567889999855 45554433 4
Q ss_pred ccEEEEecCCCeEEEEEe-e---cCcceeE-------EEEEec-CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE
Q 011970 250 VPLKILSIEDGTVLKVFY-H---LLHRNKK-------VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~-~---h~~~v~~-------V~F~~~-~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
..|-++|.++++....+. + |..+... .-|... .+...++.-....+.+||..+.+.++.+...... -
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 589999999999887664 1 1111111 111111 1122222222335668999999998887665544 4
Q ss_pred EEEEcCCCcEEEEE---c--CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 318 AFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 318 sv~Fspdg~llaS~---s--D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
-+.-+|+++.+... + +++|.|+|.+ -+.+.++...... .+..+.|++||+.+--... ..++
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h~ef~~dG~~v~vS~~---------~~~~ 339 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVVHMEFNPDGKEVWVSVW---------DGNG 339 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE-----------TT
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEeccEECCCCCEEEEEEe---------cCCC
Confidence 55669999999987 3 5799999996 7888888643331 1568999999997765544 2255
Q ss_pred eEEEEeCCCCeEEEEecC
Q 011970 392 SINVSSILTGKCLAKINA 409 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~g 409 (474)
.|.++|..|.+.++.+..
T Consensus 340 ~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEEEETTTTEEEEEEE-
T ss_pred EEEEEECCCcEEEEEEEe
Confidence 899999999999999983
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=119.68 Aligned_cols=202 Identities=10% Similarity=0.086 Sum_probs=125.4
Q ss_pred EEEEeCCCCeE--EEEecC-C--CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecC--CCCccEEEEecCCC
Q 011970 190 FVEFDDVNGKV--LTYSAQ-D--SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRS--SSHVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~--LaS~s~-D--~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~--s~D~tIkLWdi~tG 260 (474)
+-+|| |||+. +++-|. + ..|-+.|+.+|+...... .......+|||++ .||..+.. ..|..+.+|++.+|
T Consensus 189 sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 45898 79875 433332 3 356666888887432221 3345578999855 66554422 22445666888763
Q ss_pred ---eEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CC-CceEEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 261 ---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 261 ---~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv--~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
+..+.+.++......+.|+ |+|.+|+..+ .++..+||.+ .. +...+.+..+...+....|||||+.|+..+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 4444443333344677887 7788888765 5777777754 32 233344444445667888999999888664
Q ss_pred -C--CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 333 -N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 333 -D--~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
+ ..|.+||+. |++. .+...... +.+..|+|||+.|+-.+. ......|.+||+.+|+.....
T Consensus 347 ~~g~~~I~v~dl~~g~~~-~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 347 IKGVRQICVYDLATGRDY-QLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCcEEEEEECCCCCeE-EccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEECCCCCEEEee
Confidence 2 369999996 6654 44433222 467899999998875432 123578999999887764443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=128.83 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=168.0
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcCCcEEEEEEc-C--------CceEEEEecCCCCccEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKIS-P--------GIMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~~~V~~vafS-p--------g~~la~~s~~s~D~tIkLWdi~t 259 (474)
+|.++ .+...+-+++.+..++-||+.+-. .+..++++.|...-+- | ...++++ ++|+.+.|.+ +.
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~il~-k~ 93 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVILN-KS 93 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEEec-cc
Confidence 56666 467677666666666666765433 2233333333322221 1 1245554 5578888888 57
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklW 339 (474)
|++-+....|.+.+.+-.|+ |+|.-|++.++||.||||. ++|-+..++......|++++|-|+..-++-..-+.+-|=
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred chhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe
Confidence 88888888888888888887 7889999999999999999 899888888877789999999999888776654444444
Q ss_pred eCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC-----
Q 011970 340 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS----- 413 (474)
Q Consensus 340 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~----- 413 (474)
-+. ..-+-.++.|.+- |.++.++|..++|+||+. |-..|+||- .|+.|.+=..|...
T Consensus 172 pL~~n~k~i~WkAHDGi-----iL~~~W~~~s~lI~sgGE-----------D~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGL-----VLSLSWSTQSNIIASGGE-----------DFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecccccceeEEeccCcE-----EEEeecCccccceeecCC-----------ceeEEeecc-cCcccccCChhccceeeee
Confidence 443 2223357889886 789999999999999765 999999994 79988887777740
Q ss_pred --CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 414 --PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
|...++..+-+ +.++.+ -.-..|..++|||||..++.|...|.|
T Consensus 235 ~npd~~~~v~S~n---------t~R~~~---p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 235 FNPEKDYLLWSYN---------TARFSS---PRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred eccccceeeeeee---------eeeecC---CCccceEEEEEcCCCceeeccccCceE
Confidence 11111111000 001100 111278999999999999998888865
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=126.29 Aligned_cols=243 Identities=12% Similarity=0.046 Sum_probs=169.7
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccccce-----eeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCcc
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFS 156 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~-----l~~l~g~~~~~i~sv~fspd--g~~Lis~S~~~s~d~s 156 (474)
-++.|..+.|+ ..+||.|+++|.|-+||+..++. ++.+-..|.+.+..+.+.++ +.-++++|.||
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG----- 315 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG----- 315 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC-----
Confidence 35789999998 99999999999999999887775 67788889999999999655 44488888544
Q ss_pred ceeeeEEEEeEec------cCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe----EE---
Q 011970 157 SLKCRSTKIEYIR------RGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----ML--- 221 (474)
Q Consensus 157 ~Lk~~~~~iw~i~------~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~----~l--- 221 (474)
.+..|+++ .+.+......-.. ....-.-+++|.+-|=....-|+.+|.|--=+-+.++ .+
T Consensus 316 -----~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 316 -----SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred -----cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 55666652 2222111000000 0112233578876555667778888888663323222 22
Q ss_pred ---EEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 222 ---YSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 222 ---~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
+..+.+.|..|.++| .-.+..+ ++|-+||||+-. .-..|..+..+...+..|+|+|-....+++.-.||+|.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls---~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLS---VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred cccccccCcceEeeecCCCccceeee---eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 233457899999999 4444433 228899999976 55677777777788999999986667777788999999
Q ss_pred EEECCCCce--EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 297 ILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 297 IWDv~tg~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
|||+....+ +....-+.....-+.|+++|++|+.|. .|+|.+|++.
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999986543 222222344445566788899999999 9999999984
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=133.26 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=145.0
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce-----eEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 227 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-----KKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 227 ~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v-----~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
+||..-.+. .+..++... .++.+-|||...+..+....+- .+. .-+-++ +..=++++++.=+.|-+|+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~---~~ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVT---SRNSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred ccccccchhhhcceEEEEE---cCceEEEEecccCceehhcCCC-ceEEEEeEEEEecc-CcEEEEEeccccccEEEEec
Confidence 455544445 355555553 2567888998777766555421 111 111111 11225555678889999998
Q ss_pred CCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 301 ~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.--+.-.-+.||.+.+.++.||-||++++|.| |++|++|+++ ++.+. +.=||+.. ||.+.|.|+ +|++++
T Consensus 163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~g 235 (967)
T KOG0974|consen 163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVG 235 (967)
T ss_pred cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEec
Confidence 73222224789999999999999999999999 9999999995 77655 77789987 799999999 999986
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
. |.|.|+|+. .|+.+.++.+|.. +.|+.++.+++-
T Consensus 236 e-----------dctcrvW~~-~~~~l~~y~~h~g---------------------------------~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 236 E-----------DCTCRVWGV-NGTQLEVYDEHSG---------------------------------KGIWKIAVPIGV 270 (967)
T ss_pred c-----------ceEEEEEec-ccceehhhhhhhh---------------------------------cceeEEEEcCCc
Confidence 5 999999985 7888999999985 279999999999
Q ss_pred CEEEEEcCCCcEEEcc
Q 011970 458 NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 458 ~~LaSgs~DgtVklWd 473 (474)
.+++|++.|+++|+|+
T Consensus 271 ~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEeeccCcchhhhh
Confidence 9999999999999997
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-08 Score=103.70 Aligned_cols=275 Identities=15% Similarity=0.182 Sum_probs=172.0
Q ss_pred EEEeeCC----CeEEeeec--cccce--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc--
Q 011970 101 VFALAHS----GVCAAFSR--ETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-- 170 (474)
Q Consensus 101 las~s~d----gtiklW~~--~tg~~--l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-- 170 (474)
++.|++. +.|..|++ ++|+. +..+.. . ..-.-|+++|+++.|-++...+..+ ..+..+.+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~-~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~~ 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-G-ENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPDT 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-S-SSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-C-CCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCCc
Confidence 5666666 78888887 55553 233222 2 2345688999999998876432123 3555555533
Q ss_pred CCCCCccceeee-c-cccCceEEEEeCCCCeEEEEec-CCCcEEEeecCC-CeEEEE---Ec------------CCcEEE
Q 011970 171 GKPDSGFALFES-E-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---IS------------DKHVQE 231 (474)
Q Consensus 171 G~~~~~~~lf~~-~-~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~t-g~~l~t---l~------------~~~V~~ 231 (474)
|++. +... . .-..|-.|+++ |||++|..+. .+++|-++++.. |.+... +. ......
T Consensus 74 g~L~----~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 74 GTLT----LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp TEEE----EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred ceeE----EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 5541 1111 1 13456679998 7999888776 599999999975 664432 21 246789
Q ss_pred EEEcCC-ceEEEEecCCCCccEEEEecCCCe--EE--EEEee-cCcceeEEEEEecCCCeEEEE-eCCCcEEEEECC--C
Q 011970 232 IKISPG-IMLLIFNRSSSHVPLKILSIEDGT--VL--KVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 302 (474)
Q Consensus 232 vafSpg-~~la~~s~~s~D~tIkLWdi~tG~--~L--~tl~~-h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~--t 302 (474)
+.|+|+ ..+++... +. ..|.++++..+. +- ..+.- ....=+-+.|+ |++.++.+. ..+++|-++++. +
T Consensus 149 v~~~pdg~~v~v~dl-G~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL-GA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEE-TTSSEEEEEET-TT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEECCCCCEEEEEec-CC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 999985 55555543 33 478888887655 32 23331 12334778898 566666665 578999999988 5
Q ss_pred CceE--Ee---ccc---cCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---CcE--EEEeccCCCCcCCCCeeEEEEC
Q 011970 303 AELM--EV---SRT---EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 303 g~~~--~~---l~~---h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~l--l~tl~gH~~~~~~~~v~svafS 367 (474)
|.+. +. +.. ....+..++++|||++|-.+. +++|-+++++ |++ +..+.-...+ -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 5542 22 211 123788999999999877665 8899999983 554 2333221111 2789999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAK 406 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi--~tG~cl~t 406 (474)
|||++|+.++. .+++|.++++ .||++..+
T Consensus 301 ~~g~~l~Va~~----------~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 301 PDGRYLYVANQ----------DSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTSSEEEEEET----------TTTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEec----------CCCeEEEEEEeCCCCcEEEe
Confidence 99999999875 3788999976 67876544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-08 Score=105.32 Aligned_cols=270 Identities=11% Similarity=0.094 Sum_probs=169.3
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEee------cCCCccceeeeEEEEeEeccCCCCCccceee
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~------~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~ 181 (474)
+++.+.|..+++.+.++..+..- +-+ +||||+.|..+..| |.++ ..+.++|+++++..+.+++=.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~------d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRT------DYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCC------CEEEEEECccCcEEeEEccCC
Confidence 89999999999999999875422 234 99999999887642 2233 589999999999866554311
Q ss_pred e-c--cccCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEecCCCCcc-EEE
Q 011970 182 S-E--SLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVP-LKI 254 (474)
Q Consensus 182 ~-~--~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSpg~~la~~s~~s~D~t-IkL 254 (474)
. + ....+..++|| |||++|.-.- .+..|-|.|+++++.+.++.- +..+-...+++...+.+ .|+. .++
T Consensus 98 ~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~----~Dg~~~~v 172 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC----RDGSLAKV 172 (352)
T ss_pred CchhhccCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe----ecCceEEE
Confidence 1 0 13455578998 7999877443 389999999999999988862 22222333221111111 0111 111
Q ss_pred EecCCCeEE-EE---EeecCcce-eEEEEEecCCCeEEEEeCCCcEEEEECCC-----CceEEecccc-------CCceE
Q 011970 255 LSIEDGTVL-KV---FYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTE-------FMTPS 317 (474)
Q Consensus 255 Wdi~tG~~L-~t---l~~h~~~v-~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-----g~~~~~l~~h-------~~~v~ 317 (474)
=.=.+|+.. ++ |.+....+ ....|.+.+|..+.++.+ |+|.+-|+.. .+.+.++... ....-
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 111233321 11 11100000 111444335655556666 9999999544 3333332211 11222
Q ss_pred EEEEcCCCcEEEEEc---C--------CcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCcc
Q 011970 318 AFIFLYENQLFLTFR---N--------RTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPED 383 (474)
Q Consensus 318 sv~Fspdg~llaS~s---D--------~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~ 383 (474)
.++++|||+.+-... . +.|.++|.. ++.+..+. |+. +++|+|||||+ +|...+.
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~----- 319 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST----- 319 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC-----
Confidence 389998877766532 2 589999994 99988876 543 57899999999 7776653
Q ss_pred ccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 384 QWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 384 ~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+++|-+-|+.+++.++++.+
T Consensus 320 -----~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 320 -----GDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred -----CCCcEEEEECcCCeEEeeecc
Confidence 378999999999999999843
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-09 Score=116.60 Aligned_cols=311 Identities=15% Similarity=0.241 Sum_probs=208.6
Q ss_pred EEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCcc----ceeeeEEEEeE
Q 011970 94 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS----SLKCRSTKIEY 167 (474)
Q Consensus 94 i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s----~Lk~~~~~iw~ 167 (474)
+.+| |.+|++- +-+-|.||--+.=.+++-+ +|.+ |.-+.|||+-++|+|=|. .... .-..+.+.|||
T Consensus 216 v~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTF-HKQGIALWGGESFDRIQRF--YHPG-VQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEE-eccceeeecCccHHHHHhc--cCCC-ceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 5566 8888876 5555789985543444433 4655 899999999999998543 1100 01337899999
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE--EEEcCCcEEEEEEcC-CceEEEEe
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISP-GIMLLIFN 244 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l--~tl~~~~V~~vafSp-g~~la~~s 244 (474)
|++|.+..+|+.+......|| .+.+| .|+|++|--..| +|-|++...-.++ +++.-..|+...||| +..||--.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999998888876667777 46787 699999977664 5889985543222 345557899999999 55555555
Q ss_pred cCCCCc--cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC----C------CcEEEEECCCCce-EEeccc
Q 011970 245 RSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----N------ENLQILDVRNAEL-MEVSRT 311 (474)
Q Consensus 245 ~~s~D~--tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~----D------~tIkIWDv~tg~~-~~~l~~ 311 (474)
+.-.+. .+-|-.+.+++.|++-+-|.=..-.+.+- ..|++|.+.-+ - -++.|.-++..+. +.. ..
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-ve 443 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VE 443 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-ee
Confidence 544344 37788999999998877332122333332 34566665421 1 2345666655442 222 12
Q ss_pred cCCceEEEEEcCCCcEEEEEc----CCcEEEEeCC-----CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 312 EFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~s----D~tIklWd~~-----G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
-...|-+++|-|.|..|+.-+ -.||..+.++ -+++..|..-. .|.|.|||.|++++.+..
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~fvvva~l---- 512 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRFVVVAAL---- 512 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcEEEEEEe----
Confidence 235788899999999998754 3489999884 23677776521 378999999999999876
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 011970 383 DQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 461 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La 461 (474)
.|.-|.+...|..--.|..+- ..|- .-+.+.++|.|++++
T Consensus 513 ----~s~~g~l~F~D~~~a~~k~~~~~eh~-----------------------------------~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 513 ----VSRRGDLEFYDTDYADLKDTASPEHF-----------------------------------AATEVEWDPTGRYVV 553 (698)
T ss_pred ----cccccceEEEecchhhhhhccCcccc-----------------------------------ccccceECCCCCEEE
Confidence 567889999996432333221 1122 345689999999999
Q ss_pred EEcCC
Q 011970 462 TGNRH 466 (474)
Q Consensus 462 Sgs~D 466 (474)
|+|.-
T Consensus 554 T~ss~ 558 (698)
T KOG2314|consen 554 TSSSS 558 (698)
T ss_pred Eeeeh
Confidence 99853
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=114.06 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=169.8
Q ss_pred ccEEEEeeC----CCeEEe--eeccccceeeEeecCCCceEEEEEEeeCC-----CEEEEEEeecCCCccceeeeEEEEe
Q 011970 98 RDIVFALAH----SGVCAA--FSRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 98 ~~~las~s~----dgtikl--W~~~tg~~l~~l~g~~~~~i~sv~fspdg-----~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+..||.||. ...|.| .+-++|+.+..-+.-|.-++..+-|.|+- +.|||.| | ..|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-----D-------~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-----D-------FLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-----C-------eEEEE
Confidence 445555543 233333 23466887777777788899999999986 4688743 3 67778
Q ss_pred Eec--cCCCCCccceeee---ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-----EEEEcCCcEEEEEEcC
Q 011970 167 YIR--RGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-----LYSISDKHVQEIKISP 236 (474)
Q Consensus 167 ~i~--~G~~~~~~~lf~~---~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-----l~tl~~~~V~~vafSp 236 (474)
.+- .++..-...|-.. +......+..+...|=++|.++|-|-|..|||+++|.. ...-|++.|.+|+|+.
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 774 3332100001111 11111223344445567999999999999999999732 2334688999999996
Q ss_pred C--ceEEEEecCCCCccEEEEecCCCeEEEEE-eec--CcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCc-eEEec
Q 011970 237 G--IMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHL--LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAE-LMEVS 309 (474)
Q Consensus 237 g--~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h--~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~-~~~~l 309 (474)
| +++|+. +.|+.||++|++.-+.-..+ +.. ......++++.++..++++ ......|.|.|++.-. .+..|
T Consensus 207 ~s~~~FASv---gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 207 GSRDVFASV---GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred CccceEEEe---cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 4 445544 67999999998763322211 111 2345778887777777776 4566889999999854 56779
Q ss_pred cccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC--Cc-------EEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEe
Q 011970 310 RTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYC 377 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~--G~-------ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s 377 (474)
++|...|.+++|-|.. ..+.|++ |-.+-|||++ .. +..+. +| .||.|.++| .++.|+.++
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a-~~-------EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA-GG-------EVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc-cc-------eeeeeeecccCCCEEEEEe
Confidence 9999999999999865 4566777 8899999984 32 11121 22 279999995 578888764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-10 Score=110.49 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=152.8
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CC--cEEEEEEcCCceEEEEecCC-C---CccEEEEecCCCe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK--HVQEIKISPGIMLLIFNRSS-S---HVPLKILSIEDGT 261 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~--~V~~vafSpg~~la~~s~~s-~---D~tIkLWdi~tG~ 261 (474)
+|+|. .|.--.+.|- |.=+|+++.+..+.-.+-. +. .+-+.-|--+ .||.-+.++ . -..|-|||=....
T Consensus 10 svs~N-QD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N-~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 10 SVSFN-QDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSN-YLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred EEEEc-cCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhc-eEEEecCCCCCCCCCceEEEEecccCc
Confidence 58887 5655555554 4459999987644322111 11 1222222212 333332111 0 1358899977788
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCceEEeccccC--CceEEEEEcCCCcEEEEEc--CCcE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEF--MTPSAFIFLYENQLFLTFR--NRTV 336 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~~~~l~~h~--~~v~sv~Fspdg~llaS~s--D~tI 336 (474)
|+.+|.- ...|.+|.+. .++|++- -.+.|.+|... +-+.+..+.+.. ...-++.=.-+..+||--+ -|.|
T Consensus 87 ~i~el~f-~~~I~~V~l~---r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELSF-NSEIKAVKLR---RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEEe-ccceeeEEEc---CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 8888874 3678999976 3555554 56799999987 445554433322 1222232334566666655 7899
Q ss_pred EEEeCCC-cE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEecCCCC
Q 011970 337 AVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNC 412 (474)
Q Consensus 337 klWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gH~~ 412 (474)
+|=|+.- +. -...+.|... +..++++-+|.++||+|. .|| |||||..+|+.++.|+--..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD 225 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc
Confidence 9999853 32 3678899886 688999999999999986 666 89999999999999865432
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+ ..|++++||||++.||.+|..||||+..
T Consensus 226 ------------~--------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 ------------R--------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ------------h--------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 0 2899999999999999999999999874
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=120.38 Aligned_cols=255 Identities=13% Similarity=0.134 Sum_probs=169.6
Q ss_pred ccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEee-c-CCCceEEEEEEeeCC
Q 011970 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLN-V-SPDEVIRSLFYNKNN 141 (474)
Q Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~-g-~~~~~i~sv~fspdg 141 (474)
++.++|+.|.+-....-|. .-. +...|.+++.||+||+||+.+.+....+. . ++.....+++.|-++
T Consensus 61 ~~l~~fk~~~~~~N~vrf~---~~d--------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFI---SCD--------SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred hhhheecCCCCcccceEEe---cCC--------CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 4557777766655432211 000 25789999999999999988766544332 2 233578888998888
Q ss_pred CEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-
Q 011970 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT- 219 (474)
Q Consensus 142 ~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~- 219 (474)
+.++.+..-...+ -.+-|||++.-+. .. .+++. |-.-|..|.|.|.|-.+|+|||.||-|-|+|++.-.
T Consensus 130 ~ii~~GtE~~~s~------A~v~lwDvR~~qq~l~--~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 130 NIIACGTELTRSD------ASVVLWDVRSEQQLLR--QLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred CeEEeccccccCc------eEEEEEEeccccchhh--hhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 8888866544445 6788999977664 22 24443 555667899998888999999999999999987433
Q ss_pred ---EEEEEc-CCcEEEEEEc-CC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecC------cceeEE----EEE-ecC
Q 011970 220 ---MLYSIS-DKHVQEIKIS-PG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL------HRNKKV----DFI-EQF 282 (474)
Q Consensus 220 ---~l~tl~-~~~V~~vafS-pg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~------~~v~~V----~F~-~~~ 282 (474)
++.++. +..|..+.|. |+ .++... +...+.++|+++.|.+...|+-.. -....+ .-. +-+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~cl---TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCL---THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEE---EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 455664 4569999999 54 134433 236789999999999876665210 000111 111 222
Q ss_pred CCeEEEEeC-CCcEEEE---ECCCCceE---Eeccc-cCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 283 NEKLLVKQE-NENLQIL---DVRNAELM---EVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 283 ~~~ll~~~~-D~tIkIW---Dv~tg~~~---~~l~~-h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
.+.++.++. -++..|. |..++..+ ..+.| |...|+++.|.-.+.++.||+ ||.+++|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 344444432 3333333 44555543 34555 888999999999999999999 999999996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-08 Score=105.13 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=154.4
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC----------CCcEEEeecCCCeEEEEEcC----
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSISD---- 226 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~----------D~tiKlWdl~tg~~l~tl~~---- 226 (474)
.++.+-|..+++.... +..+ ..|..+ +| |||+.|..+.. +..|.|||++|++.+..+.-
T Consensus 27 ~~v~ViD~~~~~v~g~---i~~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM---TDGG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEE---EEcc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4566666666665332 2222 234455 87 78887766554 78999999999999988861
Q ss_pred -----CcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeec-CcceeEEE-----EEecCCCeEEEE-eCCC
Q 011970 227 -----KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKKVD-----FIEQFNEKLLVK-QENE 293 (474)
Q Consensus 227 -----~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~v~~V~-----F~~~~~~~ll~~-~~D~ 293 (474)
..-..+++||++. |+++. -+.+..|-+.|+++++.+.+..-- ...+.... ....|+..+-.. ..+|
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 2345799998665 44443 244788999999999999988721 11111100 001222222222 1222
Q ss_pred cEEEEECCCCceEEeccccC----CceEEEEEcC-CCcEEEEEcCCcEEEEeCCCc------EEEEeccC---CCCcCCC
Q 011970 294 NLQILDVRNAELMEVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDC 359 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~----~~v~sv~Fsp-dg~llaS~sD~tIklWd~~G~------ll~tl~gH---~~~~~~~ 359 (474)
+.+. .+- .++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.+. .+.++... ..|.|.-
T Consensus 179 ~~~~---~~~---~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 179 NPKI---KPT---EVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred ceEE---eee---eeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 2210 000 1111100 122 3455 777776655699999996432 23333222 2455532
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
..-++++|||+.|.-.........- ....+.|-++|..|++.++.+.--.
T Consensus 250 -~q~ia~~~dg~~lyV~~~~~~~~th-k~~~~~V~ViD~~t~kvi~~i~vG~---------------------------- 299 (352)
T TIGR02658 250 -WQQVAYHRARDRIYLLADQRAKWTH-KTASRFLFVVDAKTGKRLRKIELGH---------------------------- 299 (352)
T ss_pred -ceeEEEcCCCCEEEEEecCCccccc-cCCCCEEEEEECCCCeEEEEEeCCC----------------------------
Confidence 2459999999998874310000000 0113689999999999999986422
Q ss_pred cccccccCEEEEEEcCCCC-EEEEEc-CCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~-~LaSgs-~DgtVklWd 473 (474)
.+++|+|||||+ .|+..+ .+++|.+-|
T Consensus 300 -------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 -------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 689999999999 999888 578888765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-08 Score=99.27 Aligned_cols=241 Identities=16% Similarity=0.266 Sum_probs=154.4
Q ss_pred ccCceEEEEeCCCCeEEEEecC----CCcEEEeecCC--CeE--EEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~----D~tiKlWdl~t--g~~--l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIk 253 (474)
...|.+++++ |++++|-+... ++.|-.|++.. |++ +.+.. +..-..|+++| +..|+++.- .+++|-
T Consensus 36 ~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany--~~g~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY--GGGSVS 112 (345)
T ss_dssp SSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET--TTTEEE
T ss_pred CCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc--cCCeEE
Confidence 3456679998 68887776655 57888888764 564 33333 45667799997 556666543 367899
Q ss_pred EEecCC-CeEEEE---Eee----------cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCc--eEE---eccccC
Q 011970 254 ILSIED-GTVLKV---FYH----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME---VSRTEF 313 (474)
Q Consensus 254 LWdi~t-G~~L~t---l~~----------h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~--~~~---~l~~h~ 313 (474)
++++.+ |.+... +.+ ...+.-.+.|. |++..+++.. ....|.++++.... +.. ......
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 999986 665443 211 12344678887 6778888864 45689999997755 432 122345
Q ss_pred CceEEEEEcCCCcEEEEEc--CCcEEEEeCC---CcE--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 314 MTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~l--l~tl~gH~-~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
..++-++|+|||+++-... +++|.++++. |++ +++..-.. .+........|++||||++|.....
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------- 264 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------- 264 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-------
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-------
Confidence 6799999999998876554 9999999984 433 33332110 1111112478999999999987664
Q ss_pred ccCCCCeEEEEeC--CCCeE--EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 011970 386 MEGSAGSINVSSI--LTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 461 (474)
Q Consensus 386 ~~s~DgtIklWdi--~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La 461 (474)
..++|-++++ .+|+. +..+.... +.-+.++|+|||++|+
T Consensus 265 ---~~~sI~vf~~d~~~g~l~~~~~~~~~G----------------------------------~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 265 ---GSNSISVFDLDPATGTLTLVQTVPTGG----------------------------------KFPRHFAFSPDGRYLY 307 (345)
T ss_dssp ---TTTEEEEEEECTTTTTEEEEEEEEESS----------------------------------SSEEEEEE-TTSSEEE
T ss_pred ---cCCEEEEEEEecCCCceEEEEEEeCCC----------------------------------CCccEEEEeCCCCEEE
Confidence 3789999998 34543 22222111 1457899999999999
Q ss_pred EEc-CCCcEEEcc
Q 011970 462 TGN-RHGLVHVWS 473 (474)
Q Consensus 462 Sgs-~DgtVklWd 473 (474)
.++ .+++|.+++
T Consensus 308 Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 308 VANQDSNTVSVFD 320 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCeEEEEE
Confidence 887 566888875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-11 Score=124.27 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--------------ceEEe--ccc------------cCCceEEEEEc
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--------------ELMEV--SRT------------EFMTPSAFIFL 322 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg--------------~~~~~--l~~------------h~~~v~sv~Fs 322 (474)
.++..+.+.+-++.+++++-.++++.++|...- ....+ ... -...|..++||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 567888888777788888889999999975421 11111 111 12367889999
Q ss_pred CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 323 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
|||+.||+-| ||.+||.|+. -+++-.++---+- ...|++||||+||++|++ |..|-+|.+..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvtGGE-----------DDLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVTGGE-----------DDLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEecCC-----------cceEEEEEecc
Confidence 9999999999 9999999996 5555444321111 468999999999999865 99999999999
Q ss_pred CeEEEEecCCCC
Q 011970 401 GKCLAKINATNC 412 (474)
Q Consensus 401 G~cl~tl~gH~~ 412 (474)
++.++-=+||..
T Consensus 364 rRVVARGqGHkS 375 (636)
T KOG2394|consen 364 RRVVARGQGHKS 375 (636)
T ss_pred ceEEEecccccc
Confidence 999999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-09 Score=105.24 Aligned_cols=174 Identities=10% Similarity=0.188 Sum_probs=132.1
Q ss_pred CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCe
Q 011970 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEK 285 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ 285 (474)
..+-|||=..+.|+.++. ...|.+|.++++...++. .+.|++|... +-+.+..+..-..+.--.+..+-.+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 468899966778998887 578999999988766655 4689999887 446666665322222122222223344
Q ss_pred EEE-Ee-CCCcEEEEECCCCce--EEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 286 LLV-KQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 286 ll~-~~-~D~tIkIWDv~tg~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+|+ -| .=|.|||-|+..-+. ..+...|...+..++.+-+|.++||+| .| -|||||.+ |++++.|.--...
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--- 226 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--- 226 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---
Confidence 555 34 569999999987665 356688999999999999999999999 77 58999995 9999999744433
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
..+..++||||+++||.+|+ .||+.|+.+..
T Consensus 227 A~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred heEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 24899999999999999876 89999998754
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=126.26 Aligned_cols=226 Identities=18% Similarity=0.169 Sum_probs=170.9
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
=+.+-|+.||..|..++. . ..+-..|..++++...+.+. | -+..|.|- .|.+++|- ++..-+-
T Consensus 132 PY~~~ytrnGrhlllgGr----K------GHlAa~Dw~t~~L~~Ei~v~--E---tv~Dv~~L-Hneq~~AV-AQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGR----K------GHLAAFDWVTKKLHFEINVM--E---TVRDVTFL-HNEQFFAV-AQKKYVY 194 (545)
T ss_pred CeeeeecCCccEEEecCC----c------cceeeeecccceeeeeeehh--h---hhhhhhhh-cchHHHHh-hhhceEE
Confidence 377899999998887542 2 34445677888873322222 2 23378886 58888875 5777788
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe
Q 011970 212 VFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 212 lWdl~tg~~l~tl~~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
|+| ..|+.|+-+.. ..|.-+.|-|--.|++++ +.-+-++--|+.+|++...|..-.+++..+.=+ |-|..+=.|.
T Consensus 195 vYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~--~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Gh 270 (545)
T KOG1272|consen 195 VYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAA--SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGH 270 (545)
T ss_pred Eec-CCCcEEeehhhcCchhhhcccchhheeeec--ccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcC
Confidence 999 78998888874 679999999988887774 456789999999999998887555555555533 5566677788
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.+|||-+|...+.+.+..+-.|...|+++++.++|+++||++ |+.+||||++ -..+.++.- .++ ...++||.
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~---a~~ls~Sq 344 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHP---ASNLSLSQ 344 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCC---cccccccc
Confidence 999999999999998877778999999999999999999999 9999999996 333333322 222 46799998
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
-|-+.++.+ .-|.||-
T Consensus 345 kglLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYG-------------DHVQIWK 360 (545)
T ss_pred ccceeeecC-------------Ceeeeeh
Confidence 888777653 4688894
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=116.35 Aligned_cols=271 Identities=16% Similarity=0.175 Sum_probs=186.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc--CceEEEEeCCCCeEEEEec
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK--WPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~--~~~~V~Fs~~nGk~LaS~s 205 (474)
+.++-..|-.+|||++|..++.|. -.|+++|+..=-+ -|+- |+. -|.+.-.| .|=.-++---
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSL-----KFER-hlDae~V~feiLs-DD~SK~v~L~ 113 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSL-----KFER-HLDAEVVDFEILS-DDYSKSVFLQ 113 (703)
T ss_pred CccccceeEecCCCcEEEEecccC---------CceEEEEccccee-----eeee-cccccceeEEEec-cchhhheEee
Confidence 557788999999999998777665 5677777643221 1321 111 12233333 2322233334
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
.|++|-+=. +-|. -|++. ...-.+++.+ |.--|++.+++ ..|.-.|++.|.-|..|+-....++.|..+ +-+
T Consensus 114 ~DR~IefHa-k~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~h 187 (703)
T KOG2321|consen 114 NDRTIEFHA-KYGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEH 187 (703)
T ss_pred cCceeeehh-hcCe-eeeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Ccc
Confidence 577774433 2222 22222 1233566666 53223333222 358889999999999999777888999976 456
Q ss_pred CeEEEEeCCCcEEEEECCCCceEEecc------cc-----CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec
Q 011970 284 EKLLVKQENENLQILDVRNAELMEVSR------TE-----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 350 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~~~l~------~h-----~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~ 350 (474)
+.|++|.+|+.|..||.++.....++. .| ...|+++.|+.||-.++.|. +|.|-|+|++ -+.+ -..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~k 266 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVK 266 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eec
Confidence 777778899999999999877554331 12 23599999999999999998 9999999996 4433 346
Q ss_pred cCCCCcCCCCeeEEEECCC--CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 351 DHLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpD--g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+|..-.| +..+.|-+. +..++|.. ...+||||-.||+..+.++.-.
T Consensus 267 dh~~e~p---i~~l~~~~~~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~----------------- 314 (703)
T KOG2321|consen 267 DHGYELP---IKKLDWQDTDQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS----------------- 314 (703)
T ss_pred ccCCccc---eeeecccccCCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------
Confidence 7877654 788888665 77888864 4789999999999999887655
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|..+.|=|++-++.+|.++..++-
T Consensus 315 ------------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ------------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ------------------CcCceeeecCCceEEEecCCCccee
Confidence 5677888999999999998887754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=114.54 Aligned_cols=252 Identities=13% Similarity=0.150 Sum_probs=164.1
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecC-CCe----EEEEEc--------------CCcEEEEEEcCCceEEEEecCCC
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--------------DKHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~----~l~tl~--------------~~~V~~vafSpg~~la~~s~~s~ 248 (474)
+..|+|+ ..|.+||+|..+|-|-++.-. .++ ...+++ .+.|..|++-+++-++-+--...
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 4479998 799999999999999998643 222 222221 14578899985322222211255
Q ss_pred CccEEEEecCCCeE-----------------------------------EEEEe-ecCcceeEEEEEecCCCeEEEEeCC
Q 011970 249 HVPLKILSIEDGTV-----------------------------------LKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN 292 (474)
Q Consensus 249 D~tIkLWdi~tG~~-----------------------------------L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D 292 (474)
|+|||||.+..... .+.+. .|..++.++.+.. |.+. ..+.+|
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et-~lSADd 184 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKET-FLSADD 184 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccce-Eeeccc
Confidence 89999998864321 11222 4778899999873 4444 445589
Q ss_pred CcEEEEECCC-CceEEe--ccccCC-----ceEEEEEcCC-CcEEEEEc-CCcEEEEeCC--CcEE---EEeccCCCCcC
Q 011970 293 ENLQILDVRN-AELMEV--SRTEFM-----TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR--GELV---TSFEDHLLWHP 357 (474)
Q Consensus 293 ~tIkIWDv~t-g~~~~~--l~~h~~-----~v~sv~Fspd-g~llaS~s-D~tIklWd~~--G~ll---~tl~gH~~~~~ 357 (474)
=.|.||+++- .++... .+.|.| -|++.-|+|. -.+|+-++ -|+|+|-|++ .-|. ..|+...++..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 9999999873 333322 334443 4667779875 45666665 9999999996 2232 23443322211
Q ss_pred C-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 358 D-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 358 ~-------~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
- ..|..|.||++|+||+|-. =-||||||+ ...+.+.+++-|.. ...++| +.
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRD------------yltvk~wD~nme~~pv~t~~vh~~-lr~kLc--------~l 323 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRD------------YLTVKLWDLNMEAKPVETYPVHEY-LRSKLC--------SL 323 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEec------------cceeEEEeccccCCcceEEeehHh-HHHHHH--------HH
Confidence 0 1357899999999999853 289999999 77889999999985 111122 11
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++++ +.=+=..+.||-++..+.|||..+.+|+.+
T Consensus 324 YEnD----------~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 324 YEND----------AIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hhcc----------chhheeEEEEcCCcceEecccccceEEEec
Confidence 1111 001345689999999999999999999876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=117.18 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=139.6
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc------C---CcEE--EEEEcC--------------C-ceEEEEecCCC
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------D---KHVQ--EIKISP--------------G-IMLLIFNRSSS 248 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~------~---~~V~--~vafSp--------------g-~~la~~s~~s~ 248 (474)
||-+.++|++..||-+|+||..++++...+. + ..+| .+..|| | .+++-+. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---P 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec---C
Confidence 4678899999999999999999888765543 1 1223 233333 1 2333332 2
Q ss_pred CccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 249 HVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
-+.|-+.++..|++-..|. .|-+.|..+... +.-+.|-+++.|..+-.|+...++.++........+.++..+|||.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 3678999999999999998 566777777754 4457778889999999999999999999999999999999999999
Q ss_pred EEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-----CCEEEEEec
Q 011970 327 LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 378 (474)
Q Consensus 327 llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----g~~LaS~s~ 378 (474)
.|++++ ++||+||.+ +|.+.+|+||... |+.++|.-+ |+++.|...
T Consensus 158 ~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 158 ILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred EEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 999887 899999995 9999999999987 799999998 888887643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-09 Score=107.39 Aligned_cols=160 Identities=12% Similarity=0.160 Sum_probs=119.7
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--E-EeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--M-EVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~-~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~ 342 (474)
++.....+.++.+-+...|.++|-|-|.-|||+++|.- + ..|-.|...|..++|+-++ +.|||.+ ||.||+.|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 34567788888888888888999999999999999743 3 3478899999999999754 6788888 9999999985
Q ss_pred -CcEEE-EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcc
Q 011970 343 -GELVT-SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDD 418 (474)
Q Consensus 343 -G~ll~-tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~ 418 (474)
-+--+ .+|+.+... ...-+++++ |-+++|+--. ....|-|-|+.- +..++.|++|+.
T Consensus 228 ~leHSTIIYE~p~~~~---pLlRLswnkqDpnymATf~~----------dS~~V~iLDiR~P~tpva~L~~H~a------ 288 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPST---PLLRLSWNKQDPNYMATFAM----------DSNKVVILDIRVPCTPVARLRNHQA------ 288 (364)
T ss_pred ccccceEEecCCCCCC---cceeeccCcCCchHHhhhhc----------CCceEEEEEecCCCcceehhhcCcc------
Confidence 33211 233333111 133455554 3466666433 245688889854 567899999996
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|.+++|.|.. ..|.|++.|..+-+||.
T Consensus 289 ----------------------------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 ----------------------------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ----------------------------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999976 56999999999999984
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=109.86 Aligned_cols=174 Identities=11% Similarity=0.124 Sum_probs=125.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeE--
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTV-- 262 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl---~~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~-- 262 (474)
.|++. +.=--+|.+..|-+||++|- ++++--.| .+.+|.++||-| +.-|+++.. .-|-||.... +.
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~k-sst~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~-tln~ 175 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDK-SSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSR-TLNA 175 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEecc-CCCCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCc-cccc
Confidence 57776 44445778889999999994 44655444 467999999998 667777654 3588997532 22
Q ss_pred -----------EEEEe--ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE
Q 011970 263 -----------LKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (474)
Q Consensus 263 -----------L~tl~--~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll 328 (474)
++.|+ +| ..|.++++. +|+..|+.++ .|..|.|||+.+|.++....-.-..++-+.|||||..|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 22233 33 467888987 5678888877 78999999999999887653344567788999999999
Q ss_pred EEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 329 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 329 aS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
..++ |++.+||+.+ -.+.+-.-+.. . |....+||+|.+|.-.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsg-r-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSG-R-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEecccceeeeehhcccceecceeccCC-c-----eeeeeecCCCCEEEEEEc
Confidence 9999 9999999752 33333222222 2 678899999998876663
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-10 Score=118.93 Aligned_cols=205 Identities=14% Similarity=0.256 Sum_probs=145.3
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC--CceEEEEecCCCCccEEEEecC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~ 258 (474)
|.+-|..++++ .||.+|+|||.|--+.|||.-.+++++.++ ..+|.+++|=| +..++++ +..|.-|||+|+.
T Consensus 49 H~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s--gAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS--GAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe--ccCcceEEEEecc
Confidence 45666788998 799999999999999999999999998886 35899999998 5555555 3569999999997
Q ss_pred C--------C--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eEEec-cccC--CceEE
Q 011970 259 D--------G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVS-RTEF--MTPSA 318 (474)
Q Consensus 259 t--------G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~~~l-~~h~--~~v~s 318 (474)
. | +.+.-+..|..+|+.++-.+.....+.++++||||+-+|++... |...+ .-+. -...+
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ 205 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC 205 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence 4 1 22344557899999999653333788999999999999998621 22111 1122 23456
Q ss_pred EEEcCC-CcEEEEEc-CCcEEEEeC---------CCc----------EEEEec-cCC-C-------CcCCCCeeEEEECC
Q 011970 319 FIFLYE-NQLFLTFR-NRTVAVWNF---------RGE----------LVTSFE-DHL-L-------WHPDCNTNNIYITS 368 (474)
Q Consensus 319 v~Fspd-g~llaS~s-D~tIklWd~---------~G~----------ll~tl~-gH~-~-------~~~~~~v~svafSp 368 (474)
+..+|. -.+||.|. |--++|+|. .|. |++-|. +|. . .+. | ..-+.|+|
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~-~-~t~vtfnp 283 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT-C-CTYVTFNP 283 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee-e-eEEEEECC
Confidence 778874 45666676 999999991 132 454333 343 1 111 1 34689999
Q ss_pred CC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 369 DQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 369 Dg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+| .+|+|.+ -.-|.|.|+..++-..
T Consensus 284 NGtElLvs~~------------gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 284 NGTELLVSWG------------GEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCcEEEEeeC------------CeEEEEEeecCCCCce
Confidence 98 5667764 3579999998887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-09 Score=111.77 Aligned_cols=181 Identities=10% Similarity=0.140 Sum_probs=138.2
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEee---cCcce----eE--EEEEec-----------CCCe-EEE-EeCCCc
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---LLHRN----KK--VDFIEQ-----------FNEK-LLV-KQENEN 294 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~---h~~~v----~~--V~F~~~-----------~~~~-ll~-~~~D~t 294 (474)
+.++|.. .+|+-+|+||++++++.+.|.. ..+.. |. +..+|. .+++ +++ |-..|.
T Consensus 5 ~~~~A~~---~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 5 LDYFALS---TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hheEeec---CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4455543 5589999999999999988862 11211 22 121210 1222 333 558899
Q ss_pred EEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 295 LQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 295 IkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
|.++++..|++...+. .|...|.++..+.+-..|=|++ |..|-.|++. +.....+.+...- +.+++++|||
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~ 156 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDG 156 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCC
Confidence 9999999999987764 5999999998888888888988 9999999995 8888888877654 6899999999
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
+.|+++| ++|++||+.|++.+.++.||.. .|.+
T Consensus 157 ~~l~~as-------------~~ik~~~~~~kevv~~ftgh~s----------------------------------~v~t 189 (541)
T KOG4547|consen 157 KILLTAS-------------RQIKVLDIETKEVVITFTGHGS----------------------------------PVRT 189 (541)
T ss_pred CEEEecc-------------ceEEEEEccCceEEEEecCCCc----------------------------------ceEE
Confidence 9999985 6899999999999999999986 8999
Q ss_pred EEEcCC-----CCEEEEE-cCCCcEEEc
Q 011970 451 LFYDEE-----RNEIYTG-NRHGLVHVW 472 (474)
Q Consensus 451 lafSpD-----g~~LaSg-s~DgtVklW 472 (474)
++|-.+ |.++.|+ ..+.-|-+|
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEE
Confidence 999888 6665444 344445555
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=114.17 Aligned_cols=243 Identities=17% Similarity=0.202 Sum_probs=173.2
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC---CceEEEEecCCCCccEEEEec
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi 257 (474)
|.+-+..|.|. ..|..|+|||.|..|-|||-..++....+. .++|.--+|=| +..+++. +.|+.+++=.+
T Consensus 141 H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~---s~dgqvr~s~i 216 (559)
T KOG1334|consen 141 HKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS---SRDGQVRVSEI 216 (559)
T ss_pred CCCccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec---cccCceeeeee
Confidence 34556689997 799999999999999999999988776664 45676666665 6677765 55788777543
Q ss_pred -CCCeEEEE--EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec---cccCC---ceEEEEEcCCCc-E
Q 011970 258 -EDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFM---TPSAFIFLYENQ-L 327 (474)
Q Consensus 258 -~tG~~L~t--l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l---~~h~~---~v~sv~Fspdg~-l 327 (474)
++|.+.++ +.-|.+++..++.-|.....++++++|+.++=.|++++..-..+ ..+.. ..++++..|-+. +
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 46777644 34677899999987666788899999999999999987654332 23333 566788887665 7
Q ss_pred EEEEc-CCcEEEEeCC---Cc----EEEEeccCCC-CcCCCCeeEEEEC-CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 328 FLTFR-NRTVAVWNFR---GE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 328 laS~s-D~tIklWd~~---G~----ll~tl~gH~~-~~~~~~v~svafS-pDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++. |.-++++|.+ .+ .+.+|.-|.+ -.....|..++|+ ..+.+||||. |--|.|.+
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~ 364 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFN 364 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEec
Confidence 88887 9999999962 33 1233333322 1111247889999 5578899886 67788885
Q ss_pred CC--CC----------eEEEE-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 398 IL--TG----------KCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 398 i~--tG----------~cl~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
-. .| +.+.. ++||.+ +++.+.| =+|-|..++++|||
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN-----------------------------~~TVKgV--NFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRN-----------------------------SRTVKGV--NFFGPRSEYVVSGS 413 (559)
T ss_pred cccccCCCCCCCcchhhccchhhccccc-----------------------------cccccee--eeccCccceEEecC
Confidence 32 24 34444 788875 1222345 37899999999999
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.=|-|-+|+
T Consensus 414 DCGhIFiW~ 422 (559)
T KOG1334|consen 414 DCGHIFIWD 422 (559)
T ss_pred ccceEEEEe
Confidence 999999997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=106.82 Aligned_cols=223 Identities=14% Similarity=0.147 Sum_probs=143.6
Q ss_pred EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE-ecCCCcEEEee
Q 011970 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFD 214 (474)
Q Consensus 136 ~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS-~s~D~tiKlWd 214 (474)
.|||+|++||+++.| .+-|.|..+=|+. .||.. +..+-.+++. .|...+.. ..-|+.|.+|+
T Consensus 15 ~fSp~g~yiAs~~~y-----------rlviRd~~tlq~~---qlf~c--ldki~yieW~-ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-----------RLVIRDSETLQLH---QLFLC--LDKIVYIEWK-ADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eECCCCCeeeeeeee-----------EEEEeccchhhHH---HHHHH--HHHhhheeee-ccceeeeeeeeccceEEEEE
Confidence 589999999998743 2335554444432 24543 2233357776 56655554 45688999999
Q ss_pred cCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-
Q 011970 215 LKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ- 290 (474)
Q Consensus 215 l~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~- 290 (474)
+...+---.+. ...+.++.+||++ -++..+ ..|-.|.+|++.|.++. -+.+--+.++.++|. |++...+..+
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~-~dg~f~ai~sR 153 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFH-PDGQFCAILSR 153 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeE-EecccccCceeEEEC-CCCceeeeeec
Confidence 98766444554 3578999999966 444442 55788999999886553 344444567899997 6777766665
Q ss_pred CC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcE-EEEeccCCCCcCCCCeeEEEEC
Q 011970 291 EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 291 ~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~l-l~tl~gH~~~~~~~~v~svafS 367 (474)
.| .-++|.-.+.-++++.+...+.....+-+||||..|| +||---|. +.-.+--. .+..+++|
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la--------Vwd~~Leykv~aYe~~l------G~k~v~ws 219 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA--------VWDNVLEYKVYAYERGL------GLKFVEWS 219 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE--------Eecchhhheeeeeeecc------ceeEEEec
Confidence 33 2333433333344444444445566788999998774 78852221 11222112 26889999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
|-+|+||-|+. |+.+|+-|-.|-+..
T Consensus 220 P~~qflavGsy-----------D~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 220 PCNQFLAVGSY-----------DQMLRVLNHFTWKPF 245 (447)
T ss_pred cccceEEeecc-----------chhhhhhceeeeeeh
Confidence 99999999987 999999776664443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=105.00 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=158.2
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEE--------cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe----EE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT----VL 263 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--------~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~----~L 263 (474)
++.++|...+.|..+...+.....+...+ ....|-..+-.+| +|+++- +++.+.+|.++.|- .|
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~---~sG~l~~~~~k~~d~hss~l 142 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCV---SSGNLQVRHDKSGDLHSSKL 142 (412)
T ss_pred CceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEe---cCCcEEEEeccCCccccccc
Confidence 34556777777777777776665554433 1345666666654 444442 25789999998543 33
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCceEEecccc-----------CCceEEEEEcCC--CcEE
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLYE--NQLF 328 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D--~tIkIWDv~tg~~~~~l~~h-----------~~~v~sv~Fspd--g~ll 328 (474)
..+..+ ..+..|-=.+.....+++|+.. ..++|||+++.+.+ +.+- .-|+.++.|.|. .+.|
T Consensus 143 ~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 143 IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceE
Confidence 334322 2223333223334555668877 89999999987433 2221 136678999988 9999
Q ss_pred EEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 329 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 329 aS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
|++. -+.+++||.+ -..+.+|.--... +.++...|+|++|..|.. -+.+..+|+.+|+.+.
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLG 283 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeec
Confidence 9998 9999999994 4567776544433 689999999999999866 7889999999999886
Q ss_pred E-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 406 K-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 406 t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
. ++|-++ .|++|--+|.++.|||++-|.-|||.|.
T Consensus 284 ~~~kg~tG----------------------------------sirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 284 CGLKGITG----------------------------------SIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cccCCccC----------------------------------CcceEEEcCCCceEEeeccceeEEEeec
Confidence 5 777775 7899999999999999999999999874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-08 Score=102.22 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=161.1
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC------ccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~------~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
..|.+++|.-|+++=+-...-+.+ ......+..+.+.. +..++ .+.+...+. .||+ |.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~--------~~~~~~~~E~~~~s~~~~~~~~~l~----~~~I~gl~~--~dg~-Lit 120 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADD--------DLPKFVIEEFEISSSLDDAKTVSLG----TKSIKGLKL--ADGT-LIT 120 (412)
T ss_pred hhhhhheeecCCceeEeeccccCc--------ccccccccCCccccccccccccccc----cccccchhh--cCCE-EEE
Confidence 467888888777754333221222 23333333333211 11112 123335565 4785 455
Q ss_pred ecCCCcEEEeecCCCe----EEEEEc-CCcEEEEEEcCCc--eEEEEecCCCC--ccEEEEecCCCeEEEEEee----cC
Q 011970 204 SAQDSIYKVFDLKNYT----MLYSIS-DKHVQEIKISPGI--MLLIFNRSSSH--VPLKILSIEDGTVLKVFYH----LL 270 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~----~l~tl~-~~~V~~vafSpg~--~la~~s~~s~D--~tIkLWdi~tG~~L~tl~~----h~ 270 (474)
|-.+|.+.+|..+.+. .+..+. +..+..+.-+|+. ..|++ +.. .-++|||+++++.+-+-+. -+
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~G---Gke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATG---GKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecC---chhcccceeeeecccceeeeeccCCCCccc
Confidence 6779999999998543 223332 3455566666522 23332 323 5799999998744433221 01
Q ss_pred -----cceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 271 -----HRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 271 -----~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
-+...+.|.+++ +.+++++..=+.+|+||.+.+. .+..+.-....++++...|.|+++.++. -+.+...|.+
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 144778898653 4577777889999999999865 3444443455788899999999999998 9999999996
Q ss_pred -CcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 343 -GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 343 -G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
|.++.. |.|-.+. +.+|--.|.+++|||++- |..+||.|++|-+.+++.
T Consensus 278 ~~kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CceeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 777654 8888876 689999999999999876 999999999998877654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.3e-09 Score=104.38 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=185.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|.+||++++-+ +-+-|.+|=|.++-+.- -+.|.-+-+..|...++.+- |. | ..+.+|++.+.+...
T Consensus 20 g~yiAs~~~yr-lviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~-yk--~------~~vqvwsl~Qpew~c-- 85 (447)
T KOG4497|consen 20 GNYIASLSRYR-LVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA-YK--D------PKVQVWSLVQPEWYC-- 85 (447)
T ss_pred CCeeeeeeeeE-EEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeee-ec--c------ceEEEEEeecceeEE--
Confidence 99999999884 44666654443221110 13366677778887776643 32 2 378889987766421
Q ss_pred ceeeeccccCceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCc--cEE
Q 011970 178 ALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHV--PLK 253 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~--tIk 253 (474)
++-+ + ..-.-+..+| ||| .+|.++..|--|.||.|.|-++.+.-+ ...+..++|+|++++++..+ ..|. -+.
T Consensus 86 kIde-g-~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s-RrDCkdyv~ 161 (447)
T KOG4497|consen 86 KIDE-G-QAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS-RRDCKDYVQ 161 (447)
T ss_pred Eecc-C-CCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee-cccHHHHHH
Confidence 1111 1 1223368898 799 678889999999999999877765444 46789999998655544422 2232 244
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s 332 (474)
|..-+.-++++.|.-.+--...+.++| ++.-+-+||-- .--+++.-|- -.+..++++|-+|+|+.|+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsP----------dg~~laVwd~~--Leykv~aYe~~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSP----------DGNWLAVWDNV--LEYKVYAYERGLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECC----------CCcEEEEecch--hhheeeeeeeccceeEEEeccccceEEeec
Confidence 444444455666664333345667764 34556677621 0011222222 3567889999999999999
Q ss_pred -CCcEEEEeC-C----CcEE--------------------------------------------------------EEec
Q 011970 333 -NRTVAVWNF-R----GELV--------------------------------------------------------TSFE 350 (474)
Q Consensus 333 -D~tIklWd~-~----G~ll--------------------------------------------------------~tl~ 350 (474)
|+.+||-|- + ||.+ ++++
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 999998661 1 2211 1111
Q ss_pred cCCC-CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 351 DHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 351 gH~~-~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
--++ .-|-|.+--++||+|.+++|+-..+ --+.+-|||++.-+.-+.|..-.
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk~------------------ 362 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQKH------------------ 362 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhcc------------------
Confidence 0000 2234566789999999999986431 24678999997655544443222
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|.+..++|....|+-.-...-+.+|
T Consensus 363 -----------------piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 363 -----------------PIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred -----------------ceeEEEeCCCCceEEEEcCCceEEEE
Confidence 78899999999888755444446666
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=110.10 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=119.1
Q ss_pred cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCC
Q 011970 225 SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN 302 (474)
Q Consensus 225 ~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~t 302 (474)
|.+-|.+++++.+|.|+++ +|+|.-+-|||.-.-+++..+. ||...|++|.|.|..+..+++ +..|.-|+|+|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~S--GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLAS--GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEee--cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4457999999965555555 3668889999999889998886 899999999999877766666 56999999999985
Q ss_pred C----------ceEEeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcC----CCCeeEE
Q 011970 303 A----------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP----DCNTNNI 364 (474)
Q Consensus 303 g----------~~~~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~----~~~v~sv 364 (474)
. +.+....-|+..|..++--|++ ..|-+++ ||||+-+|++ -.|-.....|..-+. ......+
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 2 2233456699999999999999 8999999 9999999984 234332222211000 0124678
Q ss_pred EECCCC-CEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 365 YITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 365 afSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+||.. .+||-|. +|--.+|+|+
T Consensus 207 tisp~rp~~laVGg-----------sdpfarLYD~ 230 (758)
T KOG1310|consen 207 TISPSRPYYLAVGG-----------SDPFARLYDR 230 (758)
T ss_pred eecCCCCceEEecC-----------CCchhhhhhh
Confidence 899954 6666654 3888899984
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=103.26 Aligned_cols=224 Identities=12% Similarity=0.187 Sum_probs=148.6
Q ss_pred ccccceeecccCCCCCcccccccccccccEEEEEee----ccEEEEeeCCCeEEeeeccc-cce----------------
Q 011970 62 NMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA----RDIVFALAHSGVCAAFSRET-NRR---------------- 120 (474)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s----~~~las~s~dgtiklW~~~t-g~~---------------- 120 (474)
....+.+|.-|+|.--+ ++-|--..+|..|..- ...+.-...|.|+|+|.+.. +..
T Consensus 61 ey~~~t~fqshepEFDY---LkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~ 137 (433)
T KOG1354|consen 61 EYNFQTEFQSHEPEFDY---LKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT 137 (433)
T ss_pred ceeeeeeeeccCcccch---hhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccc
Confidence 45567888889887655 4444556777777766 44455556899999998652 111
Q ss_pred ------------------eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee-
Q 011970 121 ------------------ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE- 181 (474)
Q Consensus 121 ------------------l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~- 181 (474)
-+..-..|.--|.|+.+|.|+++++|+ || -.|.||.+.-- ++.|.+-.
T Consensus 138 ~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-----Dd------LRINLWnlei~--d~sFnIVDI 204 (433)
T KOG1354|consen 138 SLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-----DD------LRINLWNLEII--DQSFNIVDI 204 (433)
T ss_pred eeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-----cc------eeeeecccccc--CCceeEEEc
Confidence 112222366679999999999999983 67 56777876311 11111111
Q ss_pred --e--ccc-cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EE-----EEEc-C-----------CcEEEEEEcCC-
Q 011970 182 --S--ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-ML-----YSIS-D-----------KHVQEIKISPG- 237 (474)
Q Consensus 182 --~--~~~-~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l-----~tl~-~-----------~~V~~vafSpg- 237 (474)
+ +.+ --+.+.+|+|..-.+++++|.-|+|||-|+.... |. ...+ + ..|.+|+||+.
T Consensus 205 KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 205 KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG 284 (433)
T ss_pred cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence 0 111 1234679998788899999999999999997543 32 2111 0 35889999974
Q ss_pred ceEEEEecCCCCccEEEEec-CCCeEEEEEeecC------------cce---eEEEEEecCCCeEEEEeCCCcEEEEECC
Q 011970 238 IMLLIFNRSSSHVPLKILSI-EDGTVLKVFYHLL------------HRN---KKVDFIEQFNEKLLVKQENENLQILDVR 301 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi-~tG~~L~tl~~h~------------~~v---~~V~F~~~~~~~ll~~~~D~tIkIWDv~ 301 (474)
..+++ .+-.||||||+ ...+.+.+++-|. ..+ +.+.|+ -++..+++|+.....+++++.
T Consensus 285 ryils----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 285 RYILS----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred cEEEE----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecCC
Confidence 55543 23479999999 5677888877542 122 677776 345688889999999999987
Q ss_pred CCceE
Q 011970 302 NAELM 306 (474)
Q Consensus 302 tg~~~ 306 (474)
.|...
T Consensus 360 ~gsk~ 364 (433)
T KOG1354|consen 360 RGSKE 364 (433)
T ss_pred CCcce
Confidence 76543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-07 Score=97.51 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=100.8
Q ss_pred CcEEEEEEcCCce-EEEE-ecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-e--CCCcEEEEECC
Q 011970 227 KHVQEIKISPGIM-LLIF-NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVR 301 (474)
Q Consensus 227 ~~V~~vafSpg~~-la~~-s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~--~D~tIkIWDv~ 301 (474)
..+..-+|||++. ++.+ +..+....|.++|+.+|+...-.. ..+.+...+|+ |++.+|+.. + .+..|-++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC
Confidence 4677899998553 3443 332234569999999997654333 22445567786 678888775 3 34567777999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEcC--C--cEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD--~--tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
+++..+...+. .....-.|+|||+.|+=.+| + .|-+.|+. |+..+ ++.+. + ...|||||++||-
T Consensus 266 ~g~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~-------~~~~SPDG~~Ia~ 335 (419)
T PRK04043 266 TKTLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N-------NSSVSTYKNYIVY 335 (419)
T ss_pred CCcEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c-------CceECCCCCEEEE
Confidence 99876653332 22234469999987765553 3 56677776 55533 22222 1 2479999999987
Q ss_pred EecCCCccccccC-CCCeEEEEeCCCCeEEEEecC
Q 011970 376 YCKAEPEDQWMEG-SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 376 ~s~~~~~~~~~~s-~DgtIklWdi~tG~cl~tl~g 409 (474)
.+.....+ .+ ....|.+-|+.+|+. +.|..
T Consensus 336 ~~~~~~~~---~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 336 SSRETNNE---FGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred EEcCCCcc---cCCCCcEEEEEECCCCCe-EECCC
Confidence 65411000 00 113677778877753 44543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-06 Score=79.95 Aligned_cols=217 Identities=15% Similarity=0.156 Sum_probs=147.4
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
+..+.|++.+|.++.+.-..+.|..||.++++... +.......+++. +++.|+++.. ..+.+.|+++|+....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEe
Confidence 45688984489999998899999999998887543 222227888998 7888877753 34677799999765444
Q ss_pred ee-----cCcceeEEEEEecCCCeEEEE-eCC--------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE-EEE
Q 011970 267 YH-----LLHRNKKVDFIEQFNEKLLVK-QEN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTF 331 (474)
Q Consensus 267 ~~-----h~~~v~~V~F~~~~~~~ll~~-~~D--------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll-aS~ 331 (474)
.. .......+++. ++|. +.++ ... +.|-.++.. ++.... ......+..++|+||++.| ++-
T Consensus 77 ~~~~~~~~~~~~ND~~vd-~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVD-PDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE--TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEE
T ss_pred eccCCCcccCCCceEEEc-CCCC-EEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeecc
Confidence 42 34556788886 4454 5554 321 446667766 565444 3346678999999999865 455
Q ss_pred c-CCcEEEEeCC--Cc-E-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 332 R-NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 332 s-D~tIklWd~~--G~-l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+ .+.|..++++ +. + +..+.+-... .-.+++.++|++.++... .+.|.+.|. +|+
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-----pDG~~vD~~G~l~va~~~-----------~~~I~~~~p-~G~ 215 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY-----PDGLAVDSDGNLWVADWG-----------GGRIVVFDP-DGK 215 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-----EEEEEEBTTS-EEEEEET-----------TTEEEEEET-TSC
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcC-----CCcceEcCCCCEEEEEcC-----------CCEEEEECC-Ccc
Confidence 6 8888888883 43 2 2222222211 358999999999887554 789999996 599
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEEc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 464 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-SpDg~~LaSgs 464 (474)
.+..+.--.. .+++++| -||+++|+-.+
T Consensus 216 ~~~~i~~p~~----------------------------------~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVP----------------------------------RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSS----------------------------------SEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCC----------------------------------CEEEEEEECCCCCEEEEEe
Confidence 9998865432 7899999 58888877443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-08 Score=105.12 Aligned_cols=279 Identities=10% Similarity=0.145 Sum_probs=184.8
Q ss_pred hhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccE-EEEeeCCCeEEeeeccccceeeEeecCCCceEEEE
Q 011970 57 QERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDI-VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSL 135 (474)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~-las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv 135 (474)
...++.|.|-+.|++-.......+ .|+ |++ +|+|-+--.||+||+. +--|++=..-..++|.=.
T Consensus 36 ~~~~~rieLiQdfe~p~ast~ik~-s~D-------------GqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~fe 100 (703)
T KOG2321|consen 36 VDYRQRIELIQDFEMPTASTRIKV-SPD-------------GQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFE 100 (703)
T ss_pred hHHHHHHHHHHhcCCccccceeEe-cCC-------------CcEEEEecccCCceEEEEcc-cceeeeeecccccceeEE
Confidence 455667777777776554333333 455 665 6788899999999976 666666554344555443
Q ss_pred EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 136 ~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
-++-|-..++. =-.| |+|.+-. .-|.- +...--..=..+.++.|+-.++.-|+....| =.+|
T Consensus 101 iLsDD~SK~v~----L~~D------R~IefHa-k~G~h------y~~RIP~~GRDm~y~~~scDly~~gsg~evY-RlNL 162 (703)
T KOG2321|consen 101 ILSDDYSKSVF----LQND------RTIEFHA-KYGRH------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVY-RLNL 162 (703)
T ss_pred EeccchhhheE----eecC------ceeeehh-hcCee------eeeecCcCCccccccCCCccEEEeecCcceE-EEEc
Confidence 33333221111 1122 3333221 22221 1110000001356666777777666666555 4599
Q ss_pred CCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec------C-----cceeEEEEEec
Q 011970 216 KNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------L-----HRNKKVDFIEQ 281 (474)
Q Consensus 216 ~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~-----~~v~~V~F~~~ 281 (474)
+.|..|..+. ...++.|.++| .+.|+++ ..++.|..||..+-....++... . ..|.++.|. .
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~G---t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d 238 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHGLLACG---TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-D 238 (703)
T ss_pred cccccccccccccccceeeeecCccceEEec---ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-C
Confidence 9999998886 36899999998 6666654 45789999999998877777632 1 237889996 3
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEec-cccCCceEEEEEcCC--CcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYE--NQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHP 357 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspd--g~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~ 357 (474)
+|=.+++|..+|.+-|+|+++.+.+-+- .+....+..+.|.+. +..++|....++||||- +|+....++.-..
T Consensus 239 ~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~--- 315 (703)
T KOG2321|consen 239 DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD--- 315 (703)
T ss_pred CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC---
Confidence 4567777889999999999999877652 334467888889754 55677666789999998 5999988886543
Q ss_pred CCCeeEEEECCCCCEEEEEec
Q 011970 358 DCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~ 378 (474)
+|.+++-|++-++..+-.
T Consensus 316 ---lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 316 ---LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ---cCceeeecCCceEEEecC
Confidence 689999999999998753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=105.14 Aligned_cols=135 Identities=11% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCCccEEEEecCCCeEEEEE----------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CceE--Eecccc
Q 011970 247 SSHVPLKILSIEDGTVLKVF----------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELM--EVSRTE 312 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl----------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--g~~~--~~l~~h 312 (474)
-+++.+-+||+.+|..+-.| ..|..+|.+|+|-+.. ..=++++.+..+-.|.+.. |.|. ....-.
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEec
Confidence 34678999999998544333 3577899999996433 3345566777778887764 4432 112223
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
.-.|..+..-||++.|||++ |+.|||++-+ ++.+..|+-|... |+++|||||-.++|++|+ |
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask-----------D 314 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK-----------D 314 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC-----------C
Confidence 34677788999999999999 9999999995 9999999999976 799999999999999987 9
Q ss_pred CeEEEEeC
Q 011970 391 GSINVSSI 398 (474)
Q Consensus 391 gtIklWdi 398 (474)
++|-||++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999985
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-07 Score=91.55 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=141.9
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
++..++.++.++.+|.+..+|.+||+.+-.... ..+ +.+.-.-- ++.++.++ .+ ..+..+|..+|+.
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~-~~~~p~v~-~~~v~v~~----~~------g~l~a~d~~tG~~ 167 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSE-VLSPPLVA-NGLVVVRT----ND------GRLTALDAATGER 167 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cce-eecCCEEE-CCEEEEEC----CC------CeEEEEEcCCCce
Confidence 344588899999999999999999998866553 222 22211112 34454432 23 4677788888886
Q ss_pred CCccceeeeccccC------ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC--
Q 011970 174 DSGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---HVQEIKISP-- 236 (474)
Q Consensus 174 ~~~~~lf~~~~~~~------~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~------~---~V~~vafSp-- 236 (474)
+|+...... .....+. +| .+..+..++.+..+|+++|+.+.+... . .+..+.-+|
T Consensus 168 -----~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 168 -----LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred -----eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 343311000 0112232 45 456677789999999999998765421 0 011111112
Q ss_pred -CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-cCC
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFM 314 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-h~~ 314 (474)
++.+.+.+ .++.+..+|.++|+.+...+.. ....+. ..++++.+++.|+.|..+|..+|+.+-.... ...
T Consensus 240 ~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~--~~~~p~---~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 240 DGGQVYAVS---YQGRVAALDLRSGRVLWKRDAS--SYQGPA---VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred ECCEEEEEE---cCCEEEEEECCCCcEEEeeccC--CccCce---EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 45555543 3678999999999998777621 112222 2368888889999999999999987743311 111
Q ss_pred ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCC
Q 011970 315 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 354 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~ 354 (474)
...+.+. .+..+..++ |+.|.++|.+ |+++.+++-+..
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 1111111 344555666 9999999995 999998886553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-08 Score=99.72 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=144.5
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC---eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC-
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 300 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG---~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv- 300 (474)
-+.|.+-||++ ..++|++ +.+ +.|.|...... +..++|+.|...+..|++. |...+|++++.|.+-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~-~~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVS-PNN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEec-cCC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 46788999996 5555554 333 45666655443 5788999999999999998 45678999999999999998
Q ss_pred CCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 301 RNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 301 ~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
..++-.. ++.-++.....|-++|..+.||.+| -+.|.||-+++|---=...|...-....|.++.+.|++-+||.||
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4454332 3445777889999999999999999 999999998765211011122110112378999999999999988
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccc---cccccccccccccCEEEEEEc
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK---SSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~V~slafS 454 (474)
. |+..|++.. .++-+..-.. .++-++. .-. |....+.- .+|..|.||
T Consensus 166 ~-----------D~k~rVfSa----yIK~Vdekpa------p~pWgsk-----~PFG~lm~E~~~~g----gwvh~v~fs 215 (361)
T KOG1523|consen 166 T-----------DGKCRVFSA----YIKGVDEKPA------PTPWGSK-----MPFGQLMSEASSSG----GWVHGVLFS 215 (361)
T ss_pred c-----------CcceeEEEE----eeeccccCCC------CCCCccC-----CcHHHHHHhhccCC----CceeeeEeC
Confidence 7 999999874 2222221111 0000000 000 11111111 299999999
Q ss_pred CCCCEEEEEcCCCcEEE
Q 011970 455 EERNEIYTGNRHGLVHV 471 (474)
Q Consensus 455 pDg~~LaSgs~DgtVkl 471 (474)
|+|..|+=.+.|++|-+
T Consensus 216 ~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSF 232 (361)
T ss_pred CCCCEeeEecCCCceEE
Confidence 99999999999999865
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-07 Score=84.95 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=130.6
Q ss_pred EEEEeEeccCCCCCccceeeecc---ccCceEE--EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEE-EEE
Q 011970 162 STKIEYIRRGKPDSGFALFESES---LKWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQE-IKI 234 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~---~~~~~~V--~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~-vaf 234 (474)
++..+|.++|+. +|+... ... .+ .+. .+| .|..++.++.+..||.++|+.+.+... ..+.. ...
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~--~~~~~~~-~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 74 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGG--PVATAVP-DGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV 74 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSS--EEETEEE-ETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCC--ccceEEE-eCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee
Confidence 455566667775 444321 222 23 342 245 455557899999999999998877652 22111 223
Q ss_pred cCCceEEEEecCCCCccEEEEecCCCeEEEEE-eecC-----cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 235 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 235 Spg~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h~-----~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
. ++.+.+.. .++.|..+|++||+.+.++ .... .....+++ .++.++++..++.|..+|+++|+.+-.
T Consensus 75 ~-~~~v~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 75 D-GGRVYVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp E-TTEEEEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred c-cccccccc---ceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 3 44444443 2568999999999999885 3221 11222332 278888888899999999999998755
Q ss_pred ccccCCc----------eEEEEEcCCCcEEEEEcCC-cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 SRTEFMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 l~~h~~~----------v~sv~Fspdg~llaS~sD~-tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
...+... +.+-....++.++++..++ .+.+ |+. |+.+-+..-+. +.. ...+++..|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~-~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYS-LPSVDGGTLYVT 218 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECE-CEECCCTEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccC-CceeeCCEEEEE
Confidence 4332211 1222234466777766666 5777 995 88664333111 122 145788888887
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+. |+.|..||+.||+.+.+
T Consensus 219 ~~-----------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SS-----------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ET-----------TTEEEEEETTTTEEEEE
T ss_pred eC-----------CCEEEEEECCCCCEEeE
Confidence 65 89999999999998754
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-07 Score=94.32 Aligned_cols=199 Identities=8% Similarity=0.037 Sum_probs=127.5
Q ss_pred eEEEEeCCCCeE-EEEecCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~-LaS~s~D---~tiKlWdl~tg~~l~tl-~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
.+-.|| |||+. +++.+.+ ..|.++|+.+|+...-. ....+...+|||++ .++.......+..|.++|+.+|+.
T Consensus 191 ~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 191 IFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 367898 79984 7765543 56888899998743322 23456678899854 565544434456688889988874
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEEc-C----
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-N---- 333 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~s-D---- 333 (474)
+.+..+........|+ |+|.+|+..+ ..+ .|-+.|+.+|+..++.. +.. ...|||||+.++-.+ .
T Consensus 270 -~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 270 -TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred -EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcc
Confidence 4454333333456776 6888888865 333 57777999998866543 222 247999999988765 3
Q ss_pred ---C--cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 334 ---R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 334 ---~--tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+ .|.+.|+++.-.+.|..... .....|||||+.|+-... .+....+-+.++ +|.-...|.
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~~------~~~p~~SPDG~~I~f~~~--------~~~~~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANGV------NQFPRFSSDGGSIMFIKY--------LGNQSALGIIRL-NYNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCCC------cCCeEECCCCCEEEEEEc--------cCCcEEEEEEec-CCCeeEEee
Confidence 2 56677876333455654321 135789999999886654 122344777776 566555554
Q ss_pred C
Q 011970 409 A 409 (474)
Q Consensus 409 g 409 (474)
.
T Consensus 409 ~ 409 (419)
T PRK04043 409 L 409 (419)
T ss_pred c
Confidence 3
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-08 Score=104.55 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=89.2
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
.|+-=|-+-.| .+...+|++ |+..|+.-+.|+.+||+|..+-+++-+.+.-+.....|.|||||++++
T Consensus 281 NPv~~w~~~~g-----------~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 281 NPVARWHIGEG-----------SINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred CccceeEeccc-----------cccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 56666665443 456677884 788888889999999999999999999888899999999999999999
Q ss_pred EEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 330 TFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 330 S~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
+|. |.-|.||.+ +++.|..=.||..| |+.|+|-|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSW-----VSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccc-----eeeEeecc
Confidence 999 999999999 59999999999999 68999985
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-06 Score=80.25 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=133.2
Q ss_pred CCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 207 DSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
+++|..||+++|+.+.+..- ......++.+++.+.+++ .++.|..||+.||+.+.++... ..+...-. ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~--~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLP-GPISGAPV--VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECS-SCGGSGEE--EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecc-ccccceee--ec
Confidence 68899999999999887742 222222343566666653 4689999999999999888742 22211111 23
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEe-ccccC---CceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCc
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEV-SRTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 356 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~---~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~ 356 (474)
++.+++...|+.|..+|..+|+.+-. ..... ..........++..++.+. ++.|...|. +|+.+-....+....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 68888888888999999999998865 22221 1111222232355555555 999999998 499988777644221
Q ss_pred CCCC------eeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 357 PDCN------TNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 357 ~~~~------v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
. .. ...-.+..++.+.++. . ++ .+.+ |+.+|+.+..... .
T Consensus 156 ~-~~~~~~~~~~~~~~~~~~~v~~~~-~-----------~g~~~~~-d~~tg~~~w~~~~-~------------------ 202 (238)
T PF13360_consen 156 S-SPISSFSDINGSPVISDGRVYVSS-G-----------DGRVVAV-DLATGEKLWSKPI-S------------------ 202 (238)
T ss_dssp S---EEEETTEEEEEECCTTEEEEEC-C-----------TSSEEEE-ETTTTEEEEEECS-S------------------
T ss_pred C-cceeeecccccceEEECCEEEEEc-C-----------CCeEEEE-ECCCCCEEEEecC-C------------------
Confidence 0 00 1222333455555543 2 55 5788 9999997754331 1
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+.+ ...+++..|+.++.|+.|..||
T Consensus 203 -----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 203 -----------------GIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp ------------------ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred -----------------CccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 2222 2568889999999999999987
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-09 Score=72.86 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=37.4
Q ss_pred CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 401 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 401 G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|+|++++++|+. .|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~----------------------------------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS----------------------------------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS----------------------------------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC----------------------------------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 689999999996 899999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=101.61 Aligned_cols=174 Identities=13% Similarity=0.155 Sum_probs=113.2
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
|..+.+..+.+|+..+- +....-+++.++.+. ++-+ .......|+|+.. .. ..+-.++.|..
T Consensus 55 ~~~s~~~~~a~~~~~~s------~~~~llAv~~~~K~~~~f~~--~~~~~~~kl~~~~--------~v-~~~~~ai~~~~ 117 (390)
T KOG3914|consen 55 AKASEILSLAPALVLTS------DSGRLVAVATSSKQRAVFDY--RENPKGAKLLDVS--------CV-PKRPTAISFIR 117 (390)
T ss_pred hhhhhhhhccccccccC------CCceEEEEEeCCCceEEEEE--ecCCCcceeeeEe--------ec-ccCcceeeeee
Confidence 33444555666664320 123444555665332 2222 1223346666642 21 12345666764
Q ss_pred cCCCeEEE--EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCc-EEEEe-ccCCCC
Q 011970 281 QFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSF-EDHLLW 355 (474)
Q Consensus 281 ~~~~~ll~--~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~-ll~tl-~gH~~~ 355 (474)
.+-.-+++ +++...+.+|.+..+.+.. .-||-..+..|++|||++.++|+. |..|||=..-+. -+.+| -||...
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF 196 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF 196 (390)
T ss_pred ccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh
Confidence 43333333 3688999999988855544 467888999999999999999998 999999887432 33333 389987
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|..++..++ +.|+|+|. |+||++||+.+|+|+.++.-.
T Consensus 197 -----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 197 -----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred -----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccchh
Confidence 678888765 55888765 999999999999999877443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-05 Score=82.49 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=157.5
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEE----------EEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~----------sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
++.++.|+.++.+|.+..+|.+||+.+=..+......+. +++. +++.|+.++ .+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC------CEEE
Confidence 456889999999999999999999987655432211010 0111 234444322 33 4566
Q ss_pred EeEeccCCCCCccceeeeccccCceE-EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEE--EEcC---C
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEI--KISP---G 237 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~v--afSp---g 237 (474)
-.|..+|+. +|+...-..+.+ -... +|++++ ++.|+.+.-.|.+||+.+...... ....+ .-+| +
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 677788996 444321111111 1222 565554 567889999999999998877532 11000 1123 3
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCc-------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~-------~v~~V~F~~-~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
+.++.. ..++.+.-.|.++|+.+-.++.... +...+.-.| ..++.+.+.+.|+.+..+|+.+|+.+-..
T Consensus 206 ~~v~~~---~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVG---GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEE---cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 344443 3367788899999998766542110 000111010 12678888889999999999999876432
Q ss_pred cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
. ......++ -.++++++...|+.+...|.+ |+.+-..+.-..+. ..+.++ -+|. |..++.
T Consensus 283 ~--~~~~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-~~g~-l~v~~~---------- 343 (394)
T PRK11138 283 E--YGSVNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-YNGY-LVVGDS---------- 343 (394)
T ss_pred c--CCCccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-ECCE-EEEEeC----------
Confidence 1 11111221 235666665559999999984 88765433211111 111222 1444 444544
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011970 389 SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~g 409 (474)
||.|...|..||+.+...+-
T Consensus 344 -~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 -EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred -CCEEEEEECCCCCEEEEEEc
Confidence 89999999999999987754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-07 Score=90.59 Aligned_cols=192 Identities=10% Similarity=0.109 Sum_probs=150.8
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEec-CC
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI-ED 259 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg---~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi-~t 259 (474)
.+..-+|+ +|++.+|-+-+...|-|+...+. +..++++ +..|..|.++| ...|++. +.|....+|.. .+
T Consensus 12 pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc---s~drnayVw~~~~~ 87 (361)
T KOG1523|consen 12 PITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC---SHDRNAYVWTQPSG 87 (361)
T ss_pred ceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc---cCCCCccccccCCC
Confidence 44467998 79999999999999999987654 4677886 46799999998 6688876 66889999998 67
Q ss_pred CeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 260 GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 260 G~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
|+--.+|. -|......|.++ |-..+++++|.-..|-||-.+.-+- .++-+.+..+|.++.+.|++-|||.||
T Consensus 88 ~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 76555554 345677899998 5567888899999999998776442 223334566889999999999999999
Q ss_pred CCcEEEEeC------------------C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 333 NRTVAVWNF------------------R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 333 D~tIklWd~------------------~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|+..+|... - |++...+....+| |..+.|||+|..||=.+. |.+|
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-----vh~v~fs~sG~~lawv~H-----------ds~v 230 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-----VHGVLFSPSGNRLAWVGH-----------DSTV 230 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-----eeeeEeCCCCCEeeEecC-----------CCce
Confidence 999998761 1 5566666666678 689999999999997665 9999
Q ss_pred EEEeCC
Q 011970 394 NVSSIL 399 (474)
Q Consensus 394 klWdi~ 399 (474)
.+=|-.
T Consensus 231 ~~~da~ 236 (361)
T KOG1523|consen 231 SFVDAA 236 (361)
T ss_pred EEeecC
Confidence 998854
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-06 Score=88.66 Aligned_cols=283 Identities=13% Similarity=0.124 Sum_probs=182.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCe---------------EEeeeccccceeeEeecCCCce--EE-EEEEeeCCCEEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGV---------------CAAFSRETNRRICFLNVSPDEV--IR-SLFYNKNNDSLIT 146 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgt---------------iklW~~~tg~~l~~l~g~~~~~--i~-sv~fspdg~~Lis 146 (474)
.-.-|+.+-|+ +.+|.+=+..+. |.+||..+|+.+..+++ .... .| -+-|+-|..++|=
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhh
Confidence 33458888888 888888777666 99999999999999987 4344 66 7889999887765
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEEE-----ecCCCcEEEeecCCCeE
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTY-----SAQDSIYKVFDLKNYTM 220 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS-----~s~D~tiKlWdl~tg~~ 220 (474)
+. + ..+.|.++ ++..... + |..-....+...+|+|. |+..||+ ...+.++++|.+.-++.
T Consensus 149 vv--~---------~sl~i~e~-t~n~~~~-p-~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 149 VV--G---------SSLYIHEI-TDNIEEH-P-FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred hc--c---------CeEEEEec-CCccccC-c-hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 42 2 34555554 4443211 1 11101223345677765 6777776 45789999999986665
Q ss_pred EEEEcCCcEEE--EEEcC-CceEEEEecC------CC--CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-
Q 011970 221 LYSISDKHVQE--IKISP-GIMLLIFNRS------SS--HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV- 288 (474)
Q Consensus 221 l~tl~~~~V~~--vafSp-g~~la~~s~~------s~--D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~- 288 (474)
+.+-.--.|.. +++.+ |..|+.-.-. +. ..++.|.+++ +.-+....+..+.|....|.|. ...+++
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~-S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPL-SSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeeccc-CCceeEE
Confidence 54332122333 44445 4443322111 11 1468899986 3444444345688999999754 444444
Q ss_pred E-eCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc----CCcEEEEeCCCc--EEEEeccCCCCcCCCC
Q 011970 289 K-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFRGE--LVTSFEDHLLWHPDCN 360 (474)
Q Consensus 289 ~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s----D~tIklWd~~G~--ll~tl~gH~~~~~~~~ 360 (474)
. -.+-++-+.|++.. +... ..+ .=..+.|||.+++++.+. -|.|-+||.-|+ ++..|.+-..
T Consensus 293 ~g~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~------ 362 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT------ 362 (561)
T ss_pred ecccccceeecccccc-eEEecCCc---ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc------
Confidence 4 48999999999876 3322 222 224567999999999965 568999999665 4557876432
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.=+.|||||+++-+...++..- .|..|+|||+ +|..
T Consensus 363 -s~~~wspd~qF~~~~~ts~k~~-----~Dn~i~l~~v-~g~~ 398 (561)
T COG5354 363 -SYCDWSPDGQFYDTDTTSEKLR-----VDNSIKLWDV-YGAK 398 (561)
T ss_pred -eEeeccCCceEEEecCCCcccc-----cCcceEEEEe-cCch
Confidence 3467999999999887654422 3999999998 4543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-06 Score=85.89 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=140.2
Q ss_pred EEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-----
Q 011970 132 IRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----- 205 (474)
Q Consensus 132 i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----- 205 (474)
-..++.+| .+..++.+-. .....-++|.++|+..+. +...+..-.-+-..|| +||++|-+.-
T Consensus 7 gH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~--~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQR--LWAPPGRHFYGHGVFS-PDGRLLYTTENDYET 74 (305)
T ss_pred ccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeE--EcCCCCCEEecCEEEc-CCCCEEEEeccccCC
Confidence 34677788 4444444332 125667888899987542 1111111111237898 7999887643
Q ss_pred CCCcEEEeecC-CCeEEEEEcCCcE--EEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 206 QDSIYKVFDLK-NYTMLYSISDKHV--QEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 206 ~D~tiKlWdl~-tg~~l~tl~~~~V--~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
..|.|-|||+. +++.+-.++.+.| -++.+.|++ +|+++..+ -.| ..++|.
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--I~T----hpd~GR-------------------- 128 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG--IET----HPDSGR-------------------- 128 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--Ccc----CcccCc--------------------
Confidence 46799999998 7888888875444 578888866 88877422 101 001111
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEe--c--cccCCceEEEEEcCCCcEEEEEc-CC-------cEEEEeCCCcEEEEe
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEV--S--RTEFMTPSAFIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSF 349 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~--l--~~h~~~v~sv~Fspdg~llaS~s-D~-------tIklWd~~G~ll~tl 349 (474)
.+|=....+-++-..|..+|++++. + ..|...++=++..++|..+...- .+ -|-+++. |+.++.+
T Consensus 129 --~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~ 205 (305)
T PF07433_consen 129 --AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLL 205 (305)
T ss_pred --eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceec
Confidence 1222233566777888899998875 6 45888899999999998776542 21 1233332 3333333
Q ss_pred ccCCC-C-cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 350 EDHLL-W-HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 350 ~gH~~-~-~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
..-.. | --+-++-+|+|++||.++|..|. .-+.+-+||..||+++...
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP----------rGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSP----------RGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECC----------CCCEEEEEECCCCCEeecc
Confidence 32110 0 00013789999999999987765 5899999999999998765
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=95.99 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=154.2
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEE----c--------------CCcEEEEEEc-CCc---eEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI----S--------------DKHVQEIKIS-PGI---MLLIF 243 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl----~--------------~~~V~~vafS-pg~---~la~~ 243 (474)
-+.+|+|+ ..|.+||+|...|-|-++.-+. +-|-|.+ + .+.|.+|.+- |++ .|++
T Consensus 28 ~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls- 105 (460)
T COG5170 28 KITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS- 105 (460)
T ss_pred eeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe-
Confidence 45589998 6899999998889999997543 3344422 1 1357888887 533 3443
Q ss_pred ecCCCCccEEEEecCCC--------------------eEE----------------------EEE-eecCcceeEEEEEe
Q 011970 244 NRSSSHVPLKILSIEDG--------------------TVL----------------------KVF-YHLLHRNKKVDFIE 280 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG--------------------~~L----------------------~tl-~~h~~~v~~V~F~~ 280 (474)
..|+|||||.+-.. -++ +.. +.|..++.++.|..
T Consensus 106 ---tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 ---TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred ---cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 45899999988542 000 001 23566778899863
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCc-e--EEeccccCC-----ceEEEEEcCCCc-EEEEEc-CCcEEEEeCC--CcEE--
Q 011970 281 QFNEKLLVKQENENLQILDVRNAE-L--MEVSRTEFM-----TPSAFIFLYENQ-LFLTFR-NRTVAVWNFR--GELV-- 346 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~-~--~~~l~~h~~-----~v~sv~Fspdg~-llaS~s-D~tIklWd~~--G~ll-- 346 (474)
+...+.+..|-.|.||++.--. + +--.+.|.+ -+.+.-|+|+.- +|.-++ .|+|||-|++ .-|.
T Consensus 183 --D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 --DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred --chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 4455556688999999977421 2 222345553 466777998654 333344 9999999995 2232
Q ss_pred -EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCc
Q 011970 347 -TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVD 417 (474)
Q Consensus 347 -~tl~gH~~~~~~-------~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~ 417 (474)
..|+...+.+.- ..+..+.|||+|+||+|-+ --|++|||+.- .+|+.|+.-|... +..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------------yltvkiwDvnm~k~pikTi~~h~~l-~~~ 327 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------------YLTVKIWDVNMAKNPIKTIPMHCDL-MDE 327 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------------cceEEEEecccccCCceeechHHHH-HHH
Confidence 233322221100 1256789999999999865 48999999854 5799999888740 000
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
++.--+ +.+.=.=.-+.||-|.+.+.|||..+..
T Consensus 328 l~d~YE------------------nDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 328 LNDVYE------------------NDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred HHhhhh------------------ccceeeeEEEEecCCcccccccccccce
Confidence 000000 0111134568999999999999876543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-08 Score=114.96 Aligned_cols=179 Identities=13% Similarity=0.172 Sum_probs=137.5
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
|--.+-.+||+||.||+|.-..++.+.++. ...|+.++|+ .|+...+. .+|+.+-+|.+. -+...+-+.|..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 445677789999999999988888776664 3679999999 68888876 458999999985 355555666666
Q ss_pred ceeEEEEEecCCCeEEEEe---CCCcEEEEECC-CCc--eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C
Q 011970 272 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-NAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 343 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~-tg~--~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G 343 (474)
....+.|+. .-++.+| +++++-+||-- .+. ++. ..|...++.+++-|.-|+|+||+ +|-|+|||++ .
T Consensus 2294 ~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 667788873 3344443 78999999943 222 344 67999999999999999999999 9999999995 7
Q ss_pred cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 344 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 344 ~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
++.++|.. + . -..++++|+. .|+||||++.+-..++++..
T Consensus 2369 ql~h~~~~---~-----------~-~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---L-----------D-TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---h-----------h-hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 77776653 2 1 3567788765 89999999987778877754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-08 Score=104.67 Aligned_cols=300 Identities=11% Similarity=0.090 Sum_probs=176.4
Q ss_pred eecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeecc-ccceeeEeecCCCceEEEEEEeeCC---
Q 011970 68 EYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNN--- 141 (474)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~-tg~~l~~l~g~~~~~i~sv~fspdg--- 141 (474)
++.-|+.|++..-+... -..++-++... |+-+|.++.-|..-+ |+. .+.+-+-|.--..-.|-.+-+||.-
T Consensus 6 ~~gpyns~tf~kslsl~--v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~ 82 (1081)
T KOG0309|consen 6 NEGPYNSPTFGKSLSLK--VDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKP 82 (1081)
T ss_pred ccCCCCCCccCceeEEE--ecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCc
Confidence 34555666655444333 33334444444 555555555554332 222 2444333332122234455566542
Q ss_pred CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-E
Q 011970 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-M 220 (474)
Q Consensus 142 ~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~ 220 (474)
.-+++.| . +..-+|+++.-. ++++.+.-++|...+..+.|.+.+-.+||+++.|..+-.||+.... .
T Consensus 83 ~wiVsts-----~------qkaiiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 83 YWIVSTS-----N------QKAIIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred eeEEecC-----c------chhhhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 1233322 1 344578764332 1222222333455566788887777899999999999999998755 6
Q ss_pred EEEEc--CCcEEEEEEc--CCceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE
Q 011970 221 LYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 221 l~tl~--~~~V~~vafS--pg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
+|+.. ...-..|+++ ++..||++. -+-|.+||+.-| ..|.++++|...+..++|...--..+++.+.|+||
T Consensus 151 ~ys~~~w~s~asqVkwnyk~p~vlassh----g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKDPNVLASSH----GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred eeeeecccccCceeeecccCcchhhhcc----CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCce
Confidence 77765 3456678999 355555432 256999999855 78999999988899999864434667778899999
Q ss_pred EEEECCCCc--eEEeccccCCceEEEEEcCCC-----------cEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCC
Q 011970 296 QILDVRNAE--LMEVSRTEFMTPSAFIFLYEN-----------QLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 296 kIWDv~tg~--~~~~l~~h~~~v~sv~Fspdg-----------~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~ 359 (474)
+.||-.... .-++ .+....+|.-.|.|-| ..+.--. +..-+.||+ + -+.+.+|.||.+.|.+-
T Consensus 227 kfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 999976542 2222 2223355555555533 2222222 455567887 5 56799999999854210
Q ss_pred CeeEEEECCCCC------EEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 360 NTNNIYITSDQD------LIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 360 ~v~svafSpDg~------~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
.|-..=.-||+ .|++-|+ |.++|||-|.
T Consensus 306 -lWR~r~e~~~d~d~rdfQLVTWSk-----------D~~lrlWpI~ 339 (1081)
T KOG0309|consen 306 -LWRKRKECDGDYDSRDFQLVTWSK-----------DQTLRLWPID 339 (1081)
T ss_pred -hhhhcccccCCCCccceeEEEeec-----------CCceEeeecc
Confidence 01111111222 4778877 9999999874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=94.98 Aligned_cols=156 Identities=11% Similarity=0.124 Sum_probs=113.8
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-cCCceEEEEEcCCCcEEE-
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFL- 329 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-h~~~v~sv~Fspdg~lla- 329 (474)
+++|.- -+|+-+.-|+|. -.++++..|.+|+|+|-.. .|...++. -+..|.+++|-|-+..-+
T Consensus 93 vt~ws~---~dlr~~aWhqH~-----------~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHI-----------IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hhhhhh---cceeeEeechhh-----------hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceee
Confidence 566762 456666655431 2455567899999999665 55554443 445789999998766544
Q ss_pred EEcCCcEEEEeCC--CcEE-----------EE--eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 330 TFRNRTVAVWNFR--GELV-----------TS--FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 330 S~sD~tIklWd~~--G~ll-----------~t--l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
-+.-+-|-||..+ +..- +. -.||. .|.++.+.+||..|+++|. .|..|.
T Consensus 158 vgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------pVtsmqwn~dgt~l~tAS~----------gsssi~ 221 (445)
T KOG2139|consen 158 VGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------PVTSMQWNEDGTILVTASF----------GSSSIM 221 (445)
T ss_pred eeecceeEEEEcCcccccccccccccccchhheeCCCCc------eeeEEEEcCCCCEEeeccc----------CcceEE
Confidence 4558889999973 3221 12 23452 2799999999999999886 378999
Q ss_pred EEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 395 VSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 395 lWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|||+.||+|+.-. ++- ..++-|-|||||..|..+.-|++.+||+
T Consensus 222 iWdpdtg~~~pL~~~gl-----------------------------------gg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 222 IWDPDTGQKIPLIPKGL-----------------------------------GGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred EEcCCCCCcccccccCC-----------------------------------CceeeEEEcCCCCEEEEecccceeeeeh
Confidence 9999999987544 221 2788899999999999999999999994
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.3e-08 Score=112.21 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=158.0
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee-cCcce
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRN 273 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v 273 (474)
+.|+..+.+..+.+.--|..+.+..+..-+-++|..+.=+| ....+++ +.|+.|++|--..|+.+.++.. -..+|
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltg---s~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTG---SQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEec---CCCceEEEEeccCCCeEEEeeccCcchh
Confidence 45667777777877777776544433333345677666667 5556665 5689999999989999888872 23788
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE---c-CCcEEEEeC--CC--cE
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---R-NRTVAVWNF--RG--EL 345 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~---s-D~tIklWd~--~G--~l 345 (474)
....|+.+ |++..++-.||-+-+|.+. .+..-..+-|......|.|-- .+++++ + ++.+-+||. .+ -|
T Consensus 2255 tr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 99999854 8889999999999999976 444444566888888999976 667765 2 779999996 33 26
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
+. +.|... +..+++-|..++|+||++ +|-|+|||+...|+.++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 66 667665 567999999999999877 99999999988777766643
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+ ...++++|+..|.||||+.
T Consensus 2377 ---------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 ---------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ---------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4567899999999999974
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-06 Score=86.79 Aligned_cols=244 Identities=9% Similarity=0.087 Sum_probs=151.7
Q ss_pred cceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeee-ccccceeeEeecCCCceEEEEEEeeCCCE
Q 011970 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~-~~tg~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
|..-|++|....+..+..|. .+.|+++|+|.++|+|- ++.||.-..+.-+....++++.|+++-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~-------------e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPK-------------EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhhhcCchhhhhhheeccC-------------CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE
Confidence 33445666666666666666 78899999999999995 67788766665555577899999998876
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCCCCcc--ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec-CCCeE
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF--ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL-KNYTM 220 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~--~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl-~tg~~ 220 (474)
|..+= ++ .++.=.. -.-.+++-. .++. .|...+..+-|+. --+.+.|.+.|..+ .|.- +.|..
T Consensus 83 L~vg~----~n------gtvtefs-~sedfnkm~~~r~~~-~h~~~v~~~if~~-~~e~V~s~~~dk~~-~~hc~e~~~~ 148 (404)
T KOG1409|consen 83 LYVGQ----DN------GTVTEFA-LSEDFNKMTFLKDYL-AHQARVSAIVFSL-THEWVLSTGKDKQF-AWHCTESGNR 148 (404)
T ss_pred EEEEE----ec------ceEEEEE-hhhhhhhcchhhhhh-hhhcceeeEEecC-CceeEEEeccccce-EEEeeccCCc
Confidence 66521 33 1211111 111111100 0111 2344455678875 45677888888766 5642 34443
Q ss_pred E--EEEc--C-C--cEEEEEEcCCceEEEEecCCCCcc-EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC
Q 011970 221 L--YSIS--D-K--HVQEIKISPGIMLLIFNRSSSHVP-LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 292 (474)
Q Consensus 221 l--~tl~--~-~--~V~~vafSpg~~la~~s~~s~D~t-IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D 292 (474)
+ |.+. . . ..-..+|-.+ .+...+ +|+-. +.=.++.++.+|...+....+- +-++.|.++.+|
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd--------~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d 218 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGD--------HSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASD 218 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecc--------cccceEEEEEee-cCCceEEEEcCcccceEEEEEc-CCCcEEEecccc
Confidence 2 2221 0 0 1111333311 011112 23322 3445678899999999999986 345566667899
Q ss_pred CcEEEEECCCCceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE
Q 011970 293 ENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 293 ~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l 345 (474)
..+-+||+--++-+ ..+.+|.+.|.++...+--+.+.|.. ||.|.+||.+-+.
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99999999876654 45789999999998777767777777 9999999986443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=96.90 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=118.5
Q ss_pred EEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 221 LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 221 l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
+.+|+...-|++|+|=+.+---+ +.+.+..|-|-|++||- -+.|. -..-|++..|. ..+..+..|..+|.|-..|+
T Consensus 206 ~~SlQi~~a~~CawSlni~gyhf-s~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDL 281 (425)
T KOG2695|consen 206 LCSLQIPKAWSCAWSLNIMGYHF-SVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDL 281 (425)
T ss_pred eeeecCCcchhhhhhhccceeee-cccccceeEEEEeeccc-ccccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEe
Confidence 34454444455566632221111 13456778888999863 34444 23567888886 33445555789999999999
Q ss_pred CCC-----ceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-CcE---EEEeccCCCCcCCCCeeEEEECCC
Q 011970 301 RNA-----ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 301 ~tg-----~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G~l---l~tl~gH~~~~~~~~v~svafSpD 369 (474)
+.+ .|.+.+ -|...|.++-... ++|.|++++ +|+|+|||.+ -+| +++.+||.+-+. . .-+-+.|.
T Consensus 282 R~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~-l~~~v~~e 357 (425)
T KOG2695|consen 282 RCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--Y-LPAHVKEE 357 (425)
T ss_pred eecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--c-cccccccc
Confidence 975 454443 3666788877776 788888888 9999999996 677 999999976431 1 23446677
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
...|+|++. |.-.|||.+..|+++.+++-.
T Consensus 358 eg~I~s~Gd-----------DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 358 EGSIFSVGD-----------DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cceEEEccC-----------eeEEEEEecccCceeeccCCC
Confidence 788888765 999999999999999998543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-08 Score=67.38 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=36.8
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++++|++|... |++|+|+|++++|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999987 799999999999999987 99999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=100.84 Aligned_cols=292 Identities=9% Similarity=0.076 Sum_probs=169.7
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccC-ceEEEEeCC--CCeEEEEe
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKW-PGFVEFDDV--NGKVLTYS 204 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~-~~~V~Fs~~--nGk~LaS~ 204 (474)
+.++..+..+|-|+.+|.||.+| ..+-|+ ..+.+ +.+-+-...| +..+.+++. --..+++-
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-----------l~i~dld~p~~p----pr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-----------LYIIDLDDPFTP----PRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-----------eEEEeccCCCCC----ceeeeccCcchhcceecccCCCCceeEEec
Confidence 45678899999999999988654 112232 11222 2222100111 223444421 12456666
Q ss_pred cCCCcEEEeecCCCe---EEEEEcC--CcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEE
Q 011970 205 AQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKV 276 (474)
Q Consensus 205 s~D~tiKlWdl~tg~---~l~tl~~--~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V 276 (474)
+.-.+| +|+++-.. .-..+++ ..|.++-|.|+ ..||+. +-|-.+..||+..- ..+..+..-......|
T Consensus 89 s~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc---svdt~vh~wd~rSp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 89 SNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC---SVDTYVHAWDMRSPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred Ccchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeec---cccccceeeeccCCCcceeeeecccccCcee
Confidence 655555 89986322 3345554 57999999973 345554 66788999998753 3344444222344667
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEc--CCCcEEEEEcCCcEEEEeCC---CcEEEEec
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFL--YENQLFLTFRNRTVAVWNFR---GELVTSFE 350 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fs--pdg~llaS~sD~tIklWd~~---G~ll~tl~ 350 (474)
.++ .-+..+++++..+.|.+||.+.|- .+..+++|...+..+.|. -.+.++-+++|+|||.||.+ -+--++..
T Consensus 165 kwn-yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 165 KWN-YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred eec-ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 776 346678899999999999999764 677889999999999997 35555555559999999974 22222221
Q ss_pred cCCCCcCCCCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCc
Q 011970 351 DHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~--~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
-. -.++--.|.|=|+ +|.= .. +.+.-..--.+..-+.||+.++ +.++++.||++-+.
T Consensus 244 t~------~piw~~r~~Pfg~g~~~mp-~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~------------ 303 (1081)
T KOG0309|consen 244 TN------FPIWRGRYLPFGEGYCIMP-MV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL------------ 303 (1081)
T ss_pred cc------CcceeccccccCceeEecc-cc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHH------------
Confidence 11 1134444555322 2210 00 0000000011455677998887 67999999996111
Q ss_pred cccccccccccccccccccCEEEEEEcCCCC--EEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~--~LaSgs~DgtVklWd~ 474 (474)
...|+-+. ...|+-|.+ .|+|=|.|.++|||-+
T Consensus 304 ----eFlWR~r~----------e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 304 ----EFLWRKRK----------ECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ----HHhhhhcc----------cccCCCCccceeEEEeecCCceEeeec
Confidence 11111111 122333333 5999999999999953
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-05 Score=78.85 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=107.3
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCC--------ceEEEEecCCCCccE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG--------IMLLIFNRSSSHVPL 252 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSpg--------~~la~~s~~s~D~tI 252 (474)
-|+|| ||+.+||++..-|+|+|+|+ .|..++.++. ..|..+.|-+- ..|++. .++.+
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L 121 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQL 121 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe----cccee
Confidence 58998 89999999999999999998 4577777752 34666667631 223332 12233
Q ss_pred EEE--ec---CCCeEEEEEe---ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-Cce-EEeccccCCceEEEEE
Q 011970 253 KIL--SI---EDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AEL-MEVSRTEFMTPSAFIF 321 (474)
Q Consensus 253 kLW--di---~tG~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~-~~~l~~h~~~v~sv~F 321 (474)
+=. ++ +..+...+|. ++.+.|..+.|.|. -..|+++| +...-..+.... |.. -+++.+
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------- 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------- 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence 322 22 2345556666 34668899998753 35556665 333211111000 110 011111
Q ss_pred cCCCcEEEEEcCCc------EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 322 LYENQLFLTFRNRT------VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 322 spdg~llaS~sD~t------IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+|..+.+.++.|+. -.+|.+ ....-.......+. |-.+.+||||++||+... +|.|-
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~-----i~kmSlSPdg~~La~ih~-----------sG~ls 254 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG-----IFKMSLSPDGSLLACIHF-----------SGSLS 254 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCc-----eEEEEECCCCCEEEEEEc-----------CCeEE
Confidence 23333332222222 124443 12211111112233 688999999999999887 89999
Q ss_pred EEeCCCCeEEEEecCCC
Q 011970 395 VSSILTGKCLAKINATN 411 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~ 411 (474)
||++.+=+++++.+-+.
T Consensus 255 LW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 255 LWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEecCcchhhcccchhh
Confidence 99999888877775544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-05 Score=83.19 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=169.8
Q ss_pred cccccccccccEEEEEee-ccEEEEeeCCCeEEeeecc-ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 80 FVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 80 ~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~-tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.|++++--..-|.+=++- +.+-+-..++|.=.|++.. .|+-|+--...++ -+.=..|.||+.|+.. ..
T Consensus 217 tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq-----~~--- 286 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQ-----NA--- 286 (668)
T ss_pred ceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEe-----cC---
Confidence 344444444444433333 3344445566666666533 2443321111111 1222346788877652 11
Q ss_pred eeeeEEEEeEeccCCC---CCccceeee-cc---ccCceEEE-EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcE
Q 011970 158 LKCRSTKIEYIRRGKP---DSGFALFES-ES---LKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV 229 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~---~~~~~lf~~-~~---~~~~~~V~-Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V 229 (474)
..|.+.|..+-.+ +-+.+++.. +. .....+++ |+..||.++|.-|. |..-|.+...|--++.-+...|
T Consensus 287 ---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 287 ---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred ---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEcCCCCce
Confidence 3556666544332 233344422 10 11112345 88889999998874 4566666555555555556678
Q ss_pred EEEEEc-CCceEEEEecCCCCc-cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 230 QEIKIS-PGIMLLIFNRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 230 ~~vafS-pg~~la~~s~~s~D~-tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.-..|. .+.-++++.. |+ .+-|+|.++|+. +.++...+.+.+|..+ |+|.+++++-....|-+.|+.||+...
T Consensus 363 rY~r~~~~~e~~vigt~---dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 363 RYRRIQVDPEGDVIGTN---DGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred EEEEEccCCcceEEecc---CCceEEEEecCCceE-EEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 888888 3445566533 44 689999887764 5566677899999976 677778888888889999999999888
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-----CCcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-----D~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.-+.+..-+..++++|+++.+|-+- -+.|||+|+. |+. ++|-.+|. .+=||-|||++|-=
T Consensus 438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D--------fsPaFD~d~ryLYf 505 (668)
T COG4946 438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD--------FSPAFDPDGRYLYF 505 (668)
T ss_pred ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc--------cCcccCCCCcEEEE
Confidence 8788888999999999999999763 5689999997 564 33444443 35679999998753
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-07 Score=91.92 Aligned_cols=156 Identities=15% Similarity=0.247 Sum_probs=109.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCC----eEEEEEc--C--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg----~~l~tl~--~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.++ +.|++||.+-.+...-++++..- +++.... . ..+..+..+ .....+..+++...+.+|++..|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc--ceEEEEeecCCceeeeeecccccC
Confidence 46665 67888887777776666665421 2332222 1 234444443 344455556777889999998766
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
++-.+ ||...+..|+++ ||++.|+++-.|+.||+-....---++. .-||...|+.++.- ++++|+|++ |+|+++|
T Consensus 144 ~~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 65544 788899999998 6778888899999999876555444443 46899999988655 556688888 9999999
Q ss_pred eCC-CcEEEEecc
Q 011970 340 NFR-GELVTSFED 351 (474)
Q Consensus 340 d~~-G~ll~tl~g 351 (474)
|.. |+++.++.-
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 995 999987753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-06 Score=82.77 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=96.3
Q ss_pred EEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCce
Q 011970 230 QEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL 305 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~ 305 (474)
.++.|++ +..++++. +++.+.+=+...+.+.+ +.+.|.-..|...|+..+++.+.+|++|+.+.-||++ .+++
T Consensus 125 lslD~~~~~~~i~vs~---s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSD---SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEc---CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 3567776 33444432 23455555544444444 6778888999999988778778889999999999999 5667
Q ss_pred EEe-ccccCCceEEEEEc-CCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 306 MEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 306 ~~~-l~~h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
+.. .+-|.+.|.++--| |....++||+ |.+|++||.+ |+.+..-.-- + .||-+.-+|-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-----GVWRi~~~p~ 264 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-----GVWRIKHHPE 264 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-----ceEEEEecch
Confidence 655 56699999998776 6789999999 9999999995 8877532221 1 2788988884
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0004 Score=67.54 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=126.6
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE--EEEc-----CCcEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS-----DKHVQEIK 233 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l--~tl~-----~~~V~~va 233 (474)
..+.-++...++. ..+.. ..+..++|+.++|+++++.. ++ +.+.|+++++.. .... .....+++
T Consensus 22 ~~i~~~~~~~~~~----~~~~~---~~~~G~~~~~~~g~l~v~~~-~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 22 GRIYRVDPDTGEV----EVIDL---PGPNGMAFDRPDGRLYVADS-GG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp TEEEEEETTTTEE----EEEES---SSEEEEEEECTTSEEEEEET-TC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEec---CCCceEEEEccCCEEEEEEc-Cc-eEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 3555566555443 12332 22667888756887777653 44 555699999743 3442 23578999
Q ss_pred EcCCceEEEEecCCCC------ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--Cc
Q 011970 234 ISPGIMLLIFNRSSSH------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AE 304 (474)
Q Consensus 234 fSpg~~la~~s~~s~D------~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t--g~ 304 (474)
+.|++.+..+...... +.|..++.. |++...+.+ ...-..++|+ +++..|.+. +..+.|.-+|+.. ++
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccc
Confidence 9986666555433211 345566665 666555443 4667899998 567777665 6888899999863 32
Q ss_pred eE--Ee---ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEE
Q 011970 305 LM--EV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 376 (474)
Q Consensus 305 ~~--~~---l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDg~~LaS~ 376 (474)
.. ++ +.+....+-.+++..+|++.++.. .+.|.+.|.+|+++..++-.... +.+++| -||.+.|.-.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 21 22 233333588999999999999877 89999999999999888754222 679999 5776666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00026 Score=82.38 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=158.8
Q ss_pred EEEee--ccEEEEeeC------CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 93 EIVAA--RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 93 ~i~~s--~~~las~s~------dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
.|..- |+++|..+- -+.+|+|+++ |++..+-.. -++.-.+++|.|.|..||++-. ..++ +.|-
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~Vv 284 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQR-LPDR------HDVV 284 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEE-cCCC------cEEE
Confidence 44444 888888875 3689999988 887666553 4455568999999998887664 3343 4555
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc---CCcEEEEEEcC--C
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKHVQEIKISP--G 237 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~---~~~V~~vafSp--g 237 (474)
++. ++|--...|.|-....-..+..++|+ +|+.+||---.|. |+||-..||. +-+.+. ...+..+.|+| -
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 554 66665444444321112235579998 7999999977665 9999999998 444554 23445577886 2
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe---cCCCeEEEEeCCCcEEEEECCCCc-----eEEec
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEKLLVKQENENLQILDVRNAE-----LMEVS 309 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~---~~~~~ll~~~~D~tIkIWDv~tg~-----~~~~l 309 (474)
..|.+... +|+... + ...+.+++++ |++.-+++-=+..+++|=.++... +...+
T Consensus 362 ~~L~v~t~-------------~g~~~~-~----~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 362 LRLHVLTS-------------NGQYEI-Y----DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CEEEEEec-------------CCcEEE-E----EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 33333321 122110 0 1223444331 222223333355677877777654 12222
Q ss_pred cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--------EEEEeccC-----CCCcCCCCeeEEEECCCCCEEE
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--------ll~tl~gH-----~~~~~~~~v~svafSpDg~~La 374 (474)
.- ...|..++|++++..+|.-. |++|.+|... .+ +..++..+ ....+...+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 22 24789999999998777776 9999999953 21 11122211 1111112357788888887777
Q ss_pred EEecCCCccccccCCCCeEEEEeCC
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
..+. ...-..|.++++.
T Consensus 503 ~~~~--------~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 503 LSDS--------DSNQSKIVLVDID 519 (928)
T ss_pred EEec--------CcccceEEEEEec
Confidence 6553 1124678888874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=99.67 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=123.1
Q ss_pred EEEcCCcEEEEE-EcCCceEEEEecCCCCccEEEEecCC-------CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 222 YSISDKHVQEIK-ISPGIMLLIFNRSSSHVPLKILSIED-------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 222 ~tl~~~~V~~va-fSpg~~la~~s~~s~D~tIkLWdi~t-------G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
++.|.+.|+.|+ ++....++++ +.|+|||||+++. ..|.-|+..|...+.++.|.+ +.. -+.+-|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSA---SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr--~i~ScD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISA---SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLR--SIASCDG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeec---cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccc--eeeeccC
Confidence 445566777764 4445555544 6699999999863 247778888999999999985 222 3456799
Q ss_pred cEEEEECCCCceEE-eccc-cCCceEEEEE--cCCCcEEEEE-c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 294 NLQILDVRNAELME-VSRT-EFMTPSAFIF--LYENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 294 tIkIWDv~tg~~~~-~l~~-h~~~v~sv~F--spdg~llaS~-s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
-|.+||.--|.++. .... ....+..+.- +-|..++..+ + ..|||+.|.+ ++.+..++--...-|+..++.++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988888764 2211 1112222322 3356667666 5 8899999996 888887776555556667899999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
-|.|+.+|.+=. .|+|-+-|..+|+.+..++.-.
T Consensus 885 a~~GN~lAa~LS-----------nGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 885 ADKGNKLAAALS-----------NGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ccCcchhhHHhc-----------CCcEEEEecCCCceeccCCccc
Confidence 999999997643 8999999999999887766544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=85.24 Aligned_cols=280 Identities=12% Similarity=0.155 Sum_probs=169.8
Q ss_pred cEEEEEee--ccEEE-----EeeCCCe-----EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 90 KVIEIVAA--RDIVF-----ALAHSGV-----CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 90 ~V~~i~~s--~~~la-----s~s~dgt-----iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.++++.|+ +.+|. +-..+++ +++|+.+|+....+++.-.... |+.-|++|..+-+=
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar----------- 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR----------- 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-----------
Confidence 56777777 55443 2334444 4599999988777777644443 79999998753221
Q ss_pred eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe--EE-----EEecCCCcEEEeecCCCeE-----EEEEc
Q 011970 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK--VL-----TYSAQDSIYKVFDLKNYTM-----LYSIS 225 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk--~L-----aS~s~D~tiKlWdl~tg~~-----l~tl~ 225 (474)
|--..+.++++..=+-.. -+| +...+...++|| -++ .| .+.+.=..+|||-..-+.. .+++-
T Consensus 143 lv~nev~f~~~~~f~~~~-~kl----~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTIQ-HKL----SVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhcceEEEEecCCcccee-eee----eccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 111455666643311100 001 122333556653 211 22 2456677899998652111 12332
Q ss_pred -CCcEEEEEEcC-C-ceEEEEecCC--------CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE--EeCC
Q 011970 226 -DKHVQEIKISP-G-IMLLIFNRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV--KQEN 292 (474)
Q Consensus 226 -~~~V~~vafSp-g-~~la~~s~~s--------~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~--~~~D 292 (474)
.+.| ...+.+ | ..|+..+.+- +..++.+.++++-.+.-.|.. .++|.+|.|++ ++..+++ |-.=
T Consensus 217 kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~-s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 217 KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSP-SGREFAVVYGFMP 293 (566)
T ss_pred cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECC-CCCEEEEEEeccc
Confidence 2222 344454 2 2333332220 124799999985566666653 37899999984 4544554 3377
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc----CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s----D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
-.+-|+|++-.-......| .=..+-|+|.|++++-++ -|.|.+||+ +-+++.+++.-.. .-..|+
T Consensus 294 Akvtifnlr~~~v~df~eg---pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-------t~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDFPEG---PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-------TVFEWS 363 (566)
T ss_pred ceEEEEcCCCCEeEeCCCC---CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-------eEEEEc
Confidence 8899999764333333332 335677999999987654 689999999 5889998875432 348899
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|||+++.++..+ |.=+. |+.||||+. ||..+..
T Consensus 364 PdGe~flTATTa-PRlrv----dNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 364 PDGEYFLTATTA-PRLRV----DNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCcEEEEEecc-ccEEe----cCCeEEEEe-cCceeeh
Confidence 999999998862 33333 899999997 8987753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0006 Score=70.24 Aligned_cols=257 Identities=13% Similarity=0.202 Sum_probs=160.8
Q ss_pred eEEEEeEe--ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC---CCcEEEeecC--CCeEEE----EEcCCcE
Q 011970 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLY----SISDKHV 229 (474)
Q Consensus 161 ~~~~iw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~---D~tiKlWdl~--tg~~l~----tl~~~~V 229 (474)
+.|..|++ .+|++..-..+. ...-|-.++|+ ||++.|-++-. ++.|--+.+. +|++-. .+.++.-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~---~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVA---ELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhhhcc---ccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 67788887 566653322222 24567789998 79988877654 4566666554 377533 2334444
Q ss_pred EEEEEcCCc-eEEEEecCCCCccEEEEecCC-CeEEE---EEeecCcc----------eeEEEEEecCCCeEEEEe-CCC
Q 011970 230 QEIKISPGI-MLLIFNRSSSHVPLKILSIED-GTVLK---VFYHLLHR----------NKKVDFIEQFNEKLLVKQ-ENE 293 (474)
Q Consensus 230 ~~vafSpg~-~la~~s~~s~D~tIkLWdi~t-G~~L~---tl~~h~~~----------v~~V~F~~~~~~~ll~~~-~D~ 293 (474)
.-|++++++ .++++.-. -+.|.+.-+++ |.+.. .+. |... +-.+.|. |++.+|++.. .-.
T Consensus 92 ~yvsvd~~g~~vf~AnY~--~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYH--SGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTD 167 (346)
T ss_pred eEEEECCCCCEEEEEEcc--CceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeC-CCCCEEEEeecCCc
Confidence 779999754 55555322 36788888854 65432 232 2222 5566665 6777887764 233
Q ss_pred cEEEEECCCCceEEe---ccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---Cc--EEEEe-------ccCCCCc
Q 011970 294 NLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSF-------EDHLLWH 356 (474)
Q Consensus 294 tIkIWDv~tg~~~~~---l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~--ll~tl-------~gH~~~~ 356 (474)
.|.++++..|.+... .......++=++|.|+++++-.-. ++||-+|..+ |+ +++++ .|- .|
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~-~~- 245 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT-NW- 245 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC-Cc-
Confidence 688999998887542 123446788999999999988776 9999999985 33 33322 222 13
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
.-.|.+||||++|-.+-. + ...|-++.+.. |..|..+.-... +..
T Consensus 246 ----~aaIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~t---eg~----------------- 291 (346)
T COG2706 246 ----AAAIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITPT---EGQ----------------- 291 (346)
T ss_pred ----eeEEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEecc---CCc-----------------
Confidence 468999999999996543 2 34677776632 233443322221 000
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCC-cEEEc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG-LVHVW 472 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg-tVklW 472 (474)
.=....|+|+|+.|+.+++|. +|.+.
T Consensus 292 -----------~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 292 -----------FPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred -----------CCccceeCCCCCEEEEEccCCCcEEEE
Confidence 124578999999999998754 45544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=94.03 Aligned_cols=214 Identities=18% Similarity=0.175 Sum_probs=141.8
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCcc-ceeee-ccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGF-ALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~~-~lf~~-~~~~~~~~V~Fs~~ 196 (474)
+||.+.| |.+.||.++-=.|.+..|++| .| +++++|.|+ .|.-..+- --|+. .|.+.+..+-|- .
T Consensus 727 rL~nf~G-H~~~iRai~AidNENSFiSAS----kD------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~ 794 (1034)
T KOG4190|consen 727 RLCNFTG-HQEKIRAIAAIDNENSFISAS----KD------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-A 794 (1034)
T ss_pred eeecccC-cHHHhHHHHhcccccceeecc----CC------ceEEEEEeccccCccccceeeeEhhhccCcccceeee-e
Confidence 5788887 778999998877778889876 45 699999984 34332221 13443 255666678886 5
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEe---
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--- 267 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--- 267 (474)
+-+++||+ |+-|.|||.--|+++....+ ..+.-|+--| +.-++++. ++...|||+.|.+.++-...++
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEecc
Confidence 77788865 89999999888887764431 2232333333 33334332 4557899999998887555444
Q ss_pred --ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE-EeC-C
Q 011970 268 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV-WNF-R 342 (474)
Q Consensus 268 --~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl-Wd~-~ 342 (474)
+....++.++.- +.|.+++++=.+|+|-+.|.++|+.+...+.-.-..-.++ -|..|.|+++. |.++.+ |.. +
T Consensus 872 a~~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 872 APGPNALTRAIAVA-DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCCCchheeEEEec-cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 223455667653 6688888888999999999999998765432111111111 35666777776 999999 997 5
Q ss_pred CcEEEEec
Q 011970 343 GELVTSFE 350 (474)
Q Consensus 343 G~ll~tl~ 350 (474)
|....+.+
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 87665554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00012 Score=75.17 Aligned_cols=219 Identities=11% Similarity=0.145 Sum_probs=137.5
Q ss_pred CCcEEEeecCC--CeE--EEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecC--CCeEEE----EEeecCccee
Q 011970 207 DSIYKVFDLKN--YTM--LYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE--DGTVLK----VFYHLLHRNK 274 (474)
Q Consensus 207 D~tiKlWdl~t--g~~--l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~--tG~~L~----tl~~h~~~v~ 274 (474)
++-|.+|++.+ |++ +..+. ..+.+=++|+|++ .|.+....+.++.|--+.+. +|++-. ++.++ .-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCe
Confidence 45588888863 332 11111 3567778888755 55555444445666555444 365421 12222 224
Q ss_pred EEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEEe--ccccCCc----------eEEEEEcCCCcEEEEEc--CCcEEE
Q 011970 275 KVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV--SRTEFMT----------PSAFIFLYENQLFLTFR--NRTVAV 338 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~~--l~~h~~~----------v~sv~Fspdg~llaS~s--D~tIkl 338 (474)
-|++. ++++.++++. .-+.|.++-++. |.+... ...|... +-..-|.|+|++|++.. -..|-+
T Consensus 93 yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 56665 4567777775 569999999865 654432 1223333 66788999999999986 335779
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCC
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKV 416 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~ 416 (474)
++++ |.+...=+.+. .+++.-+-|+|+|+|+++-.-+. -+++|-+|..... .-+..|+-+...|..
T Consensus 172 y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~E----------L~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 172 YDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNE----------LNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred EEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEec----------cCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 9995 87644222221 23333478999999998877765 4899999998763 455666666644432
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
..- -.+.-+|..+|||+.||..++
T Consensus 240 F~g-------------------------~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 240 FTG-------------------------TNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred cCC-------------------------CCceeEEEECCCCCEEEEecC
Confidence 211 116778999999999998874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.8e-05 Score=81.32 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=127.5
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEE-EE--c------C-------CcEEEEEEcCCceEEEEecCCCCccEEEEecCC
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLY-SI--S------D-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~-tl--~------~-------~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t 259 (474)
.|||.++.. .-|.|-++|.+|-++.+ .+ + . ......+..+|.+++..+. +.+-|.+.-.
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWD 350 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCC
Confidence 378888764 45678899987754321 11 1 0 1122355557999888765 3455555545
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC-cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~-tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
|-.++. +|..+|+=..+. -+++.++.+-.|| .+-|+|..+|+..+. .+....|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 555543 344667777775 4577888888777 999999999886554 45667899999999999999888 44777
Q ss_pred EEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 338 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 338 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+-|++ |+.. ..+..... -+...+++|++++||=+ .. + +---+.|||.|+.+||....
T Consensus 427 vididngnv~-~idkS~~~----lItdf~~~~nsr~iAYa-fP--~----gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 427 VIDIDNGNVR-LIDKSEYG----LITDFDWHPNSRWIAYA-FP--E----GYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEecCCCee-Eecccccc----eeEEEEEcCCceeEEEe-cC--c----ceeeeeEEEEecCCCeEEEe
Confidence 77775 7642 22221111 26789999999999943 32 1 11257899999998887654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-05 Score=83.27 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=111.7
Q ss_pred EEEeCCCCeEEE-EecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 191 V~Fs~~nGk~La-S~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+=++ |||+.|- +.-..+.+-+.|.++.+...++. +.+-..++++|++ ++.+++. |.|.|..+..+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsy----------NsE~G~tl~em~ 266 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCY----------NSEEGVTLAEMM 266 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEecc----------CcccCcceeeec
Confidence 4453 6887663 34456788888888877766665 4555678999744 4444421 223344333332
Q ss_pred ecCcceeEEEEEe-------cCCCeEEEEeCCCcEEEEECCC----C-ceEEeccccCCceEEEEEcCCCcEEEEEc--C
Q 011970 268 HLLHRNKKVDFIE-------QFNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--N 333 (474)
Q Consensus 268 ~h~~~v~~V~F~~-------~~~~~ll~~~~D~tIkIWDv~t----g-~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D 333 (474)
-. ..-+.+.|.. ++|.+..+ .+++|.+.|.++ + +.+.... -...++.+.+||||+++..++ +
T Consensus 267 a~-e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 267 AA-ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cc-cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 10 1113344432 23444443 368899999998 3 4444322 234688899999999998887 9
Q ss_pred CcEEEEeCC-Cc------------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 334 RTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 334 ~tIklWd~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
.+|.|-|++ -+ .+.+.+--..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHH
Confidence 999999985 33 24444432332 35889999987776554 78888999876
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-05 Score=75.28 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=114.6
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc------CCceEEEEEcCCC-------cEEEEEcCCcE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-------QLFLTFRNRTV 336 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h------~~~v~sv~Fspdg-------~llaS~sD~tI 336 (474)
...-+.|+|+ ||+..|+.+...|+|+++|+-..++.....++ ...|..++|.+-. ++|+-.-+|.+
T Consensus 43 ~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3456899997 66666666889999999999887776544333 2455666786543 55555557766
Q ss_pred EEEeCC-C-----cEEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 337 AVWNFR-G-----ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 337 klWd~~-G-----~ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+=+-+. | +.-. +|..|... .|+++.+.|.-++|+-|+....++..+...+.-+--|-+.++..-.+.-
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~----Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPH----GINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCC----ceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 666642 2 2223 34344221 2789999999887776665333332222223345678777765433321
Q ss_pred CCCCCCCCccccCCCCCCcccccccccccc-----ccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIR-----STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.-.. + ...........+++- +...+..+.|..+..||||+.||+-..+|.|-||++
T Consensus 198 ~~~~--~--------~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 198 TSSE--D--------DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cccC--c--------cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 1110 0 001111112222222 222345669999999999999999999999999974
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00027 Score=73.87 Aligned_cols=226 Identities=12% Similarity=0.091 Sum_probs=136.4
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~s-v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
++..++.|+.++.+|.+..+|.+||+.+=..+. ... +.+ .... +| .|+.+. .+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~-~~ssP~v~-~~-~v~v~~----~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGE-ALSRPVVS-DG-LVLVHT----SN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccC-CCc-eecCCEEE-CC-EEEEEC----CC------CEEEEEEccCCC
Confidence 455688889999999999999999998876653 222 222 1221 33 344322 22 355566778888
Q ss_pred CCCccceeeeccccC------ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC-
Q 011970 173 PDSGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---HVQEIKISP- 236 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~------~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~------~---~V~~vafSp- 236 (474)
. +|....... ..+-... +|.++ .++.|+.+...|+++|+.+....- . ....+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~v~-~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGGAI-VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCEEE-EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 5 444321000 0011122 34444 456688888889999987765431 0 112222334
Q ss_pred --CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--cc
Q 011970 237 --GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TE 312 (474)
Q Consensus 237 --g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h 312 (474)
++.+.+.+ .++.+.-.|+++|+.+-+... .....+. ..++++.+...|+.+..+|..+|+.+-... .+
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 55655543 357899999999998866542 1111222 236888889999999999999998753221 11
Q ss_pred CCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEecc
Q 011970 313 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED 351 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~g 351 (474)
.. ..+.+ -.+|.+++...||.|.+.|. +|+.+...+-
T Consensus 326 ~~-~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 RL-LTAPV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred Cc-ccCCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 11 11111 13677766555999999999 5999877653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.5e-05 Score=81.97 Aligned_cols=179 Identities=13% Similarity=0.197 Sum_probs=122.9
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCC--------CccEEEEecCCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSS--------HVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~--------D~tIkLWdi~tG 260 (474)
.|.|| |-|.+|+|=-.-| |-+|-=++...++.+..-.|+-|.||| ..+|++++..-. -..+.||||.||
T Consensus 215 yv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 48998 7999999987766 779987777777777777899999999 677777765411 146999999999
Q ss_pred eEEEEEee--cCcceeEE-EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc---C-
Q 011970 261 TVLKVFYH--LLHRNKKV-DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---N- 333 (474)
Q Consensus 261 ~~L~tl~~--h~~~v~~V-~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D- 333 (474)
.+.++|.. ....+|.+ .++ .+++.+|-=.-.+|.|++..+-.++..-.-.-..|..+.|||.+++||-=. +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEec--cCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99999974 22222332 233 356666643347899998776555432111234677889999999998533 2
Q ss_pred --CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 334 --RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 334 --~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
-++.|-.+ +++.+++-.=|. |.|| .+.+-.+|++|+-.-
T Consensus 371 ~parvtL~evPs~~~iRt~nlfn--VsDc---kLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFN--VSDC---KLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceeeecccee--eecc---EEEeccCCcEEEEEE
Confidence 25666666 466666554443 3344 377888999998653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00058 Score=79.53 Aligned_cols=338 Identities=11% Similarity=0.092 Sum_probs=177.2
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEee----eccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceee
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAF----SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW----~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~ 160 (474)
...+|.++.+- .+.|..+..+|-|-+. +..+. ....-|.-+..|.+.+||||+++||.+. |...+-.|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~m-- 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLM-- 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEE--
Confidence 44677777776 6667777778888777 44433 2333445567799999999999998865 32221111
Q ss_pred eEEEEeEeccCCCCCccceeeec---cccCc-eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESE---SLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS- 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~---~~~~~-~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS- 235 (474)
+ +=|++..-.... -..|+.. +++|= ..=-|.=.-||..|-...|-++. .+..|.. + .++.--.|.|-
T Consensus 148 -t-~~fd~i~E~~l~-~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 148 -T-RDFDPISEVPLD-SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWRG 219 (928)
T ss_pred -e-ccceEEEEeecC-ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEECC
Confidence 1 112221111000 0011110 11110 00123211233222111122221 1111111 1 12223345555
Q ss_pred CCceEEEEecC--CC-CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCceEEe-
Q 011970 236 PGIMLLIFNRS--SS-HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEV- 308 (474)
Q Consensus 236 pg~~la~~s~~--s~-D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg~~~~~- 308 (474)
+|..+|+++-. .+ -..||+|+-+ |++..+-+.-.+---.++|- |.|..|++.+ ....|-.|. ++|..-..
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF 296 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFE-RNGLRHGEF 296 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeE
Confidence 47777777652 22 3689999964 88777766211222456665 5566666665 356777787 56653321
Q ss_pred ---ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC---CcEEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCC
Q 011970 309 ---SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEP 381 (474)
Q Consensus 309 ---l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpD-g~~LaS~s~~~~ 381 (474)
+......|..+.|++|+.+||---...|+||... .-+.+.+.-.... .+..+.|+|. ...|...+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~--- 369 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTS--- 369 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEec---
Confidence 2245568899999999999998665559999873 3466666533221 1234777773 333444432
Q ss_pred ccccccCCCCeEEEEe----CCCCe--------EEEEecCCCCCCCCccccCCCCCCcccccccccccccccc------c
Q 011970 382 EDQWMEGSAGSINVSS----ILTGK--------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG------E 443 (474)
Q Consensus 382 ~~~~~~s~DgtIklWd----i~tG~--------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 443 (474)
.|.+...+ +..+. .++.+.|..- ..+......-..| +
T Consensus 370 --------~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l-----------------llTpf~~a~VPPPMs~~~l~ 424 (928)
T PF04762_consen 370 --------NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL-----------------LLTPFRRAVVPPPMSSYELE 424 (928)
T ss_pred --------CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE-----------------EEecccccCCCchHhceEEc
Confidence 34444333 22221 2333333221 1111111111111 1
Q ss_pred cccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 444 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
....|.+|+|++++..+|.-..||+|.+|.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 223899999999999999999999999885
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0012 Score=69.32 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=145.7
Q ss_pred eccccceeeEeecCCCceEEEE-----EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecc-ccC
Q 011970 114 SRETNRRICFLNVSPDEVIRSL-----FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES-LKW 187 (474)
Q Consensus 114 ~~~tg~~l~~l~g~~~~~i~sv-----~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~-~~~ 187 (474)
|..||-++-.|...+ ..-.++ .|.+||+.|+.+|... .. +...+-|+.+|+..+ ++.+. -..
T Consensus 16 D~~TG~~VtrLT~~~-~~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~Q----LTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPD-GHSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEITQ----LTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE-S-TT-S-EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEEE-------SS-B-T
T ss_pred CCCCCceEEEecCCC-CcccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEEE----CccCCCCCc
Confidence 466787777776533 211212 3578999998887643 23 566667778887632 23211 111
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEcCCcEEEEEEc--CCceEEEEecC-C---------------
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIS--PGIMLLIFNRS-S--------------- 247 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~~~~V~~vafS--pg~~la~~s~~-s--------------- 247 (474)
. ....+ |+.+.|.+-....+++--||+|.+ ++|.++..++-...++ .+..++.+... .
T Consensus 84 ~-g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 84 F-GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp T-T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred c-ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 1 12233 677888887777788888999987 6889988888766665 35544433211 1
Q ss_pred ----CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe---CCC-cEEEEECCC-CceEEeccccCCceEE
Q 011970 248 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPSA 318 (474)
Q Consensus 248 ----~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~-tIkIWDv~t-g~~~~~l~~h~~~v~s 318 (474)
-...|.--|+.||+.-..+.. ..+..=+.|+|.++..|.-+- +|. .-|||=+.+ |.-.+.+..|....++
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred HhhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 122456679999998777763 356677899977666666663 455 347775543 3222222222221111
Q ss_pred --EEEcCCCcEEEEE-----c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC-Ccccc---
Q 011970 319 --FIFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE-PEDQW--- 385 (474)
Q Consensus 319 --v~Fspdg~llaS~-----s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~-~~~~~--- 385 (474)
=-|+|||..+.-- . +..|.=.|.. |+--...+ ..| ..-.-.++||+++|-= .++ |-+..
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~-----~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~ 312 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPW-----CSHFMSSPDGKLFVGD-GGDAPVDVADAG 312 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-S-----EEEEEE-TTSSEEEEE-E-----------
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCc-----eeeeEEcCCCCEEEec-CCCCCccccccc
Confidence 1278888876541 2 4456666663 54322221 122 2356678999998843 322 21110
Q ss_pred --ccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEE
Q 011970 386 --MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYT 462 (474)
Q Consensus 386 --~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaS 462 (474)
....|--|.|+++++++.. .|.-|.. +|.......+.++ .-+.|||||+. |++
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~-~l~~h~~---------------------sw~v~~~~~q~~h--Php~FSPDgk~VlF~ 368 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFR-KLARHDT---------------------SWKVLDGDRQVTH--PHPSFSPDGKWVLFR 368 (386)
T ss_dssp --------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEE
T ss_pred cceecCCcEEEEeccccCcee-eeeeccC---------------------cceeecCCCccCC--CCCccCCCCCEEEEE
Confidence 1123457888999877653 4444542 1222222222233 24899999998 556
Q ss_pred EcCCCcEEEc
Q 011970 463 GNRHGLVHVW 472 (474)
Q Consensus 463 gs~DgtVklW 472 (474)
.+..|...|+
T Consensus 369 Sd~~G~~~vY 378 (386)
T PF14583_consen 369 SDMEGPPAVY 378 (386)
T ss_dssp E-TTSS-EEE
T ss_pred CCCCCCccEE
Confidence 6677765553
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=80.33 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=147.7
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
++..+.| |.+.|+....-|..+.++++| +| +++|||-= ..||.-..+.++. -..+...+|. ++-
T Consensus 16 ll~~~eG-~~d~vn~~~l~~~e~gv~~~s----~d------rtvrv~lkrds~q~wpsI~~~m---P~~~~~~~y~-~e~ 80 (404)
T KOG1409|consen 16 LLSKIEG-SQDDVNAAILIPKEEGVISVS----ED------RTVRVWLKRDSGQYWPSIYHYM---PSPCSAMEYV-SES 80 (404)
T ss_pred hhhhhcC-chhhhhhheeccCCCCeEEcc----cc------ceeeeEEeccccccCchhhhhC---CCCceEeeee-ccc
Confidence 4667787 678899988888888999976 78 89999963 3455422222222 2233456665 455
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
..|.-|=..+++.=+ +.|. +.+ ..++....|+.++..+
T Consensus 81 ~~L~vg~~ngtvtef-------------------s~sedfnkm---------------------~~~r~~~~h~~~v~~~ 120 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEF-------------------ALSEDFNKM---------------------TFLKDYLAHQARVSAI 120 (404)
T ss_pred eEEEEEEecceEEEE-------------------Ehhhhhhhc---------------------chhhhhhhhhcceeeE
Confidence 555555444433222 2221 111 1122223456667777
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC---CCcEEEEeccC
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVTSFEDH 352 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~---~G~ll~tl~gH 352 (474)
-|+.+ .+.+++.+.|+.+.=-=.++|.-+ .++.+.-.+.+.-.|=...--|- -+.|.+-.+ .-.++.++.+|
T Consensus 121 if~~~-~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 121 VFSLT-HEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred EecCC-ceeEEEeccccceEEEeeccCCcc---cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 77643 466666666666653333333322 11111000000000000000111 223333222 24578899999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccccCCCCCCccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
.+. +..+.+.|-+++|.||.. |..|-+|||--++- ...+.+|.+
T Consensus 197 ~~~-----~~~l~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~------------------- 241 (404)
T KOG1409|consen 197 TGE-----VTCLKWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND------------------- 241 (404)
T ss_pred ccc-----eEEEEEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh-------------------
Confidence 986 689999999999999876 99999999954433 357788886
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.++.+-+--+.|.|++.||.|.+|++
T Consensus 242 ---------------kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 242 ---------------KVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ---------------hhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 7888888888999999999999999985
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=83.91 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=171.9
Q ss_pred cccccccccEEEEEee-ccEEEEeeCCCeEEeeeccc--cce-eeEeecCCCceEEEEEEeeCCCEEEEEEeecCC-Ccc
Q 011970 82 LPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRET--NRR-ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFS 156 (474)
Q Consensus 82 ~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~t--g~~-l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~-d~s 156 (474)
++-.|||.-|.-+..+ -+++.++|.||.+|.|.-.- |-. +..+. .|...|-+++.|-||.+.+|++ + |
T Consensus 3 eksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~----d~D-- 75 (558)
T KOG0882|consen 3 EKSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVE----DPD-- 75 (558)
T ss_pred chhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeecc----Ccc--
Confidence 3445799999988888 89999999999999998431 222 22222 4778899999999999999865 4 6
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC----eEEEEecCCCcEEEeecCCCeE--EE--EEcCCc
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKH 228 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG----k~LaS~s~D~tiKlWdl~tg~~--l~--tl~~~~ 228 (474)
+.+|+.|+.+=.....++|- --|+++++...-| .+-++...++.|-|.|-....| .+ .++-..
T Consensus 76 ----hs~KvfDvEn~DminmiKL~-----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 76 ----HSVKVFDVENFDMINMIKLV-----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred ----cceeEEEeeccchhhhcccc-----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 78888888665553322211 1233444432234 4444555788888998554332 22 344567
Q ss_pred EEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 229 VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 229 V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
|-.+..+| +...++. ...+.|+-|+.+. .++-.+ ..+. |.+.+-.-+-
T Consensus 147 V~~i~y~qa~Ds~vSi---D~~gmVEyWs~e~--~~qfPr------~~l~--------------------~~~K~eTdLy 195 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSI---DISGMVEYWSAEG--PFQFPR------TNLN--------------------FELKHETDLY 195 (558)
T ss_pred eEEEEeeccccceeec---cccceeEeecCCC--cccCcc------cccc--------------------ccccccchhh
Confidence 88888887 4433332 1236799998642 221111 1112 2222222222
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec--------------------------------cCC
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHL 353 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~--------------------------------gH~ 353 (474)
.+..-...+.++.|+|+|..+++.+ |++|++.++. |++++.++ .|.
T Consensus 196 ~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred cccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 2222334678899999999999999 9999999994 87765333 343
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 354 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 354 ~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..+ -.++.|-..|++|+=++. =-||+-|+.|++|++.|--
T Consensus 276 ~~~----~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 276 STV----GTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILGK 315 (558)
T ss_pred Ccc----cceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEecc
Confidence 332 246779999999996653 3499999999999998843
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-05 Score=79.39 Aligned_cols=265 Identities=15% Similarity=0.200 Sum_probs=156.5
Q ss_pred cccEEEEEee--ccEEEEeeCCCeEEeeeccccc-----eeeEeecCC-----------CceEEEEEEeeCCC---EEEE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSP-----------DEVIRSLFYNKNND---SLIT 146 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~-----~l~~l~g~~-----------~~~i~sv~fspdg~---~Lis 146 (474)
...|.+|.|. |.+||+|...|.|-+|.++.-+ .+..++++. .+.|..+-+-.+++ .|.+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3468888888 9999999999999999877433 122245421 23466777655543 4554
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--------C
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------Y 218 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------g 218 (474)
..| ++++||-|....+ ++-....+. .++.| |-.| -|+|-. .+++=.+.. .
T Consensus 106 -----tNd------ktiKlWKiyeknl----k~va~nnls--~~~~~-~~~g-~~~s~~---~l~lprls~hd~iiaa~p 163 (460)
T COG5170 106 -----TND------KTIKLWKIYEKNL----KVVAENNLS--DSFHS-PMGG-PLTSTK---ELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred -----cCC------ceeeeeeeecccc----hhhhccccc--ccccc-ccCC-CcCCHH---HhhcccccccceEEEecc
Confidence 356 7999998865543 111111111 12333 2222 222211 121111110 0
Q ss_pred eEEE-EEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecC--CCeE-EEEEee-----cCcceeEEEEEecCCCeEEE
Q 011970 219 TMLY-SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE--DGTV-LKVFYH-----LLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 219 ~~l~-tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~--tG~~-L~tl~~-----h~~~v~~V~F~~~~~~~ll~ 288 (474)
.-+| ..|.-.|.+|.|.. ...++++ +|-.|-||+++ +|.- +--.+- ...-+.+..|+|+-...+.-
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY 239 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY 239 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence 1112 22345689999995 5566543 47789999875 2211 111111 12334677787654555556
Q ss_pred EeCCCcEEEEECCCCc-eEE-------e--------ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC--CcEEEEec
Q 011970 289 KQENENLQILDVRNAE-LME-------V--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~-~~~-------~--------l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~--G~ll~tl~ 350 (474)
++..|+|+|-|++... |.. + +.+-...++.+-|+|.|+++++-+=-||||||++ .+++.|..
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec
Confidence 7899999999999543 211 1 1222346778899999999998777799999995 77888885
Q ss_pred cCCC--------CcCCCC--eeEEEECCCCCEEEEEec
Q 011970 351 DHLL--------WHPDCN--TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 351 gH~~--------~~~~~~--v~svafSpDg~~LaS~s~ 378 (474)
=|.. ...||. --.+.||-|.+.+.|||.
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 5532 111111 135789999999999886
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=67.92 Aligned_cols=253 Identities=13% Similarity=0.128 Sum_probs=145.9
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-----------
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD----------- 174 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~----------- 174 (474)
..+..-++|+++++....... ...+....|||||+.||-+. + +.+.+.+...|+..
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEE
Confidence 356788999998765443332 45688999999999998864 2 34555554444320
Q ss_pred Cccc--eeeeccccCceEEEEeCCCCeEEEEecCCC------------------------------------cEEEeecC
Q 011970 175 SGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------IYKVFDLK 216 (474)
Q Consensus 175 ~~~~--lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~------------------------------------tiKlWdl~ 216 (474)
.+.+ +.+.|-+.....+-|| |||+.||....|. .+.|+|++
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 1111 1111114444568898 7999999876321 34456777
Q ss_pred CCeEE-EEEc------CCcEEEEEEcCCce-EEEE--ecCCCCccEEEEecCCCeEEEEEee-cCcce---eEEEEEecC
Q 011970 217 NYTML-YSIS------DKHVQEIKISPGIM-LLIF--NRSSSHVPLKILSIEDGTVLKVFYH-LLHRN---KKVDFIEQF 282 (474)
Q Consensus 217 tg~~l-~tl~------~~~V~~vafSpg~~-la~~--s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v---~~V~F~~~~ 282 (474)
+++.. ..+. +..+..+.++|++. ++.. ++......+.+.|.++|++-..++. ...++ ....|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 77632 1211 24588899997544 4333 3333334577889998877544442 22333 356665234
Q ss_pred CCeE-EEEeCCCcEEEE--ECCCCceEEeccccCCceEE-EEEcCCCcEEE-EEc-C--CcEEEEeC--C-CcEEEEecc
Q 011970 283 NEKL-LVKQENENLQIL--DVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFED 351 (474)
Q Consensus 283 ~~~l-l~~~~D~tIkIW--Dv~tg~~~~~l~~h~~~v~s-v~Fspdg~lla-S~s-D--~tIklWd~--~-G~ll~tl~g 351 (474)
+..+ .....||--+|+ |..++....+..| ...|.. +.+.++++.+. ++. + ..-.||-+ + |.-++.|+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCEEEEEEEcCCCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 4444 445567655554 6666665544444 445644 55777766543 444 2 35566665 5 667888887
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
....+ .++.|||||++++-.|.
T Consensus 326 ~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred CCCCc-----eEEEECCCCCEEEEEEc
Confidence 76652 48999999999987663
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=73.68 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=138.4
Q ss_pred EEEEeeCCCeEEeeeccccceeeEeecCCCc---e--EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDE---V--IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~l~~l~g~~~~---~--i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
.++-+--+|.+.++..+--...++|++=... + --++-|++-|..+++.-..| .+.+=+...+.+.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G----------~~~~v~~t~~~le 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRG----------SISGVYETEMVLE 156 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCC----------cEEEEecceeeee
Confidence 4444555677888876655666677652211 1 23566777787766522111 1111111122221
Q ss_pred CccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEE---EcCCcEEEEEEcC--CceEEEEecCCC
Q 011970 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYS---ISDKHVQEIKISP--GIMLLIFNRSSS 248 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~t---l~~~~V~~vafSp--g~~la~~s~~s~ 248 (474)
..+.+-.++---| ..+|+.-+-.++-+|+.|+.+.-||+. .++++.+ .|...|-+|.=|| .-.++++ +.
T Consensus 157 ~vq~wk~He~E~W--ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG---sY 231 (339)
T KOG0280|consen 157 KVQTWKVHEFEAW--TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG---SY 231 (339)
T ss_pred ecccccccceeee--eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe---cc
Confidence 1111222221234 678887666788999999999999998 5566654 3456899999995 4556654 67
Q ss_pred CccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-----EEeccccCCceEEEEEc
Q 011970 249 HVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-----MEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 249 D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-----~~~l~~h~~~v~sv~Fs 322 (474)
|..|++||.+ =|+.|..-+ -.+.||.+...|..-.++|++..-+-.||-+++.+.. +...+.|..-.+.-.+.
T Consensus 232 De~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred ccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence 8999999987 477775544 2378999998876566778888888889998876532 22344555444433342
Q ss_pred CCCcEEEEEc--CCcEE-EEeC
Q 011970 323 YENQLFLTFR--NRTVA-VWNF 341 (474)
Q Consensus 323 pdg~llaS~s--D~tIk-lWd~ 341 (474)
.-.-+|||.| |+.|+ +|-.
T Consensus 311 ~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 311 SKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccceeeeeeccccceeeeeee
Confidence 1123578865 88755 8864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00044 Score=69.18 Aligned_cols=228 Identities=10% Similarity=-0.002 Sum_probs=142.2
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcE------EEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV------QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V------~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
+--+||-|++-|..++|.+.+.+-...+.+... .-.+.+.- .+.+ ++.|.|+|+.+++-+ .++...|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i---~sndht~k~~~~~~~-s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNI---ASNDHTGKTMVVSGD-SNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceee---ccCCcceeEEEEecC-cccceeecc
Confidence 344899999999999999987664333332222 22233311 1223 266899999998654 333322221
Q ss_pred -cceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceE-E-eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--C
Q 011970 271 -HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELM-E-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G 343 (474)
Q Consensus 271 -~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~-~-~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G 343 (474)
-.+.+++.+ +++..+++-+.-..|-.+.+.. ++.+ + ......+.-....||....+||++. ||++.|||++ +
T Consensus 158 ~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 125777765 5566555567778888887764 4433 3 2344445556778999999999999 9999999995 6
Q ss_pred cEEEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 344 ELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 344 ~ll~tl~gH~~~~~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
.+..+..... .+++..++.+-|||-| ++|. .++ .=+-+.+-|+.+++-.+.+.--.+ +..
T Consensus 237 tpm~~~sstr-p~hnGa~R~c~Fsl~g~lDLLf-~sE----------hfs~~hv~D~R~~~~~q~I~i~~d----~~~-- 298 (344)
T KOG4532|consen 237 TPMAEISSTR-PHHNGAFRVCRFSLYGLLDLLF-ISE----------HFSRVHVVDTRNYVNHQVIVIPDD----VER-- 298 (344)
T ss_pred cchhhhcccC-CCCCCceEEEEecCCCcceEEE-Eec----------CcceEEEEEcccCceeeEEecCcc----ccc--
Confidence 6554333111 1122347999999865 3343 222 146788899988876665544332 000
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.-+.+.|+.-.|+.++..+...+++..
T Consensus 299 --------------------~~~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 299 --------------------KHNTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred --------------------cccccccccccccCCCcccccccchhh
Confidence 011236888889999988888887653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-06 Score=95.65 Aligned_cols=247 Identities=15% Similarity=0.165 Sum_probs=152.7
Q ss_pred cCcchhhhhhhcccccccCCccc----ccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEee--ccEEE
Q 011970 29 DGFVNSVKKLQRREICSKRDRAF----SISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVF 102 (474)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~la 102 (474)
+...|---.|-+||.-+...+-. ...+.--|||++. .|--|+.- -..++|+ ...|+
T Consensus 1056 ~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~---~frd~~~~---------------fTc~afs~~~~hL~ 1117 (1516)
T KOG1832|consen 1056 EAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWR---SFRDETAL---------------FTCIAFSGGTNHLA 1117 (1516)
T ss_pred hcchhhhhcccchhhcCcccccccCcccchhhHhhcccch---hhhccccc---------------eeeEEeecCCceEE
Confidence 44566666778888776655433 2334445666654 33334332 3445666 78899
Q ss_pred EeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCccceee
Q 011970 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFE 181 (474)
Q Consensus 103 s~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~~~lf~ 181 (474)
.|++.|.+|++|..+|+.....|. |...|.-|--|.||.++.+.|++++-. .-||+.. .|+.. .-|.
T Consensus 1118 vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~Pl--------saLW~~~s~~~~~---Hsf~ 1185 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPL--------SALWDASSTGGPR---HSFD 1185 (1516)
T ss_pred eeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCch--------HHHhccccccCcc---cccc
Confidence 999999999999999999999996 889999999999999998877655322 2367753 33321 1233
Q ss_pred eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-EcC-----CcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD-----KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-l~~-----~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
. -. .|.|+. .-+.=+-|..-...-|+|++|+..+.| |.+ ..-..+.|||...|+.- |+ -||
T Consensus 1186 e--d~---~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-----dG--vLW 1252 (1516)
T KOG1832|consen 1186 E--DK---AVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-----DG--VLW 1252 (1516)
T ss_pred c--cc---eeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-----Cc--eee
Confidence 2 22 689973 222222222334578999999997776 332 12356789996666543 22 389
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
|++.-+-++.|........ =.|. |.|..+++-+ .|||++|-++++....- .--+|.|..-|..
T Consensus 1253 DvR~~~aIh~FD~ft~~~~-G~FH-P~g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYGG-GGFH-PSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDV 1315 (1516)
T ss_pred eeccHHHHhhhhhheeccc-cccc-CCCceEEeec-----hhhhhHHHHHHhcCccc--cceEEEeccCccc
Confidence 9987776766642211111 1244 4454555543 49999998877543221 1235566655544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-06 Score=94.45 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=130.2
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-CCceEEEEecCCCCcc-EEEEecC-CCeEEE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVP-LKILSIE-DGTVLK 264 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafS-pg~~la~~s~~s~D~t-IkLWdi~-tG~~L~ 264 (474)
.++|+ .+-..|+-|+.-|.||++++.+|...-+. |+..|.-|--| +|.+++++++.| .| ..||+.. +|...+
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S--~PlsaLW~~~s~~~~~H 1182 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS--SPLSALWDASSTGGPRH 1182 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc--CchHHHhccccccCccc
Confidence 58998 78889999999999999999999977655 45678888888 688888775432 43 6799975 455666
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-cccc---CCceEEEEEcCCCcEEEEEcCCcEEEEe
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTE---FMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h---~~~v~sv~Fspdg~llaS~sD~tIklWd 340 (474)
+|.+ -..|.|+.. -..-+.|.+-.-..|||++|+..+.+ +.+- +-.-.-+.|||+..|++ .|| -|||
T Consensus 1183 sf~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWD 1253 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWD 1253 (1516)
T ss_pred cccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeee
Confidence 6653 356777632 22333455557788999999987665 3321 11123456899888875 355 4799
Q ss_pred CC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 341 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 341 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
++ -+-++.|..-... -.=.|+|.|.-++.-+. |||+.|=+.|++...
T Consensus 1254 vR~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred eccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 96 6667766544422 12349999999997654 899999888876644
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.028 Score=59.07 Aligned_cols=270 Identities=11% Similarity=0.103 Sum_probs=180.1
Q ss_pred EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCce
Q 011970 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (474)
Q Consensus 110 iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~ 189 (474)
+.+++..+++....+.. . .....+.++|+|..+..+.... ++ +-.+... .+. ...+-.....++.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~-~~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n~-~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-G-RGPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SNT-VTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-C-CCCceeEEcCccCEEEEEeecC-ce----------eeecccc-cce-eeeeccCCCcccc
Confidence 55666666665555553 2 2568899999997665443222 11 1122222 111 1111111114555
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.+++++...+..+....+..|.+-|.++.+++.++. +..-..++++| +..+.++.....+.++-+.|-.+++.+++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788875555588888888999999999999888886 45678899997 5577776543247899999999999998865
Q ss_pred ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEE-e---ccccCCceEEEEEcCCCcEEEEEc--C--CcEEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 338 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~-~---l~~h~~~v~sv~Fspdg~llaS~s--D--~tIkl 338 (474)
--... ..++|. |+++++.+. ..+++|.+.|.++....+ . ...-...+.-++++|+|+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 32233 778876 678877776 589999999988777664 1 122334677899999999555443 3 68888
Q ss_pred EeCC-CcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 339 WNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 339 Wd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
-|.. +....+ +..-..+ -..++++|+|+.+-.... ..+++.+=|-.+.+...++....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeecccc
Confidence 8885 665554 2222211 246899999999987643 25889999988888888776655
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00068 Score=67.87 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=109.1
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecC--CCeEEE-EEeecCcceeE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE--DGTVLK-VFYHLLHRNKK 275 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~--tG~~L~-tl~~h~~~v~~ 275 (474)
|--++.|.|+|+.++..+..-..++- -.+.++++||++.+.+.-.++.+ |-++.|. .-..++ +...-.++-+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~--Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRR--VFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCc--ceEEEeCCccceeeeeEecccCCCcee
Confidence 33468899999999987665555553 34889999987766665444433 5455443 333455 33344566789
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCc-eE----EeccccCCceEEEEEcCCCcE---EEEEcCCcEEEEeCC-CcEE
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAE-LM----EVSRTEFMTPSAFIFLYENQL---FLTFRNRTVAVWNFR-GELV 346 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~----~~l~~h~~~v~sv~Fspdg~l---laS~sD~tIklWd~~-G~ll 346 (474)
+.|++ .+..++++..|+++-|||+++-. ++ .+-..|.+.++.+.|+|.|-+ |.|-.=+-+.|-|++ +.-.
T Consensus 209 ~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 209 NSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99984 57888999999999999999844 22 234569999999999976654 222225678888884 5533
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+...- -..+.|+|..|-|...+.+
T Consensus 288 q~I~i---------~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 288 QVIVI---------PDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred eEEec---------Ccccccccccccccccccc
Confidence 32211 1234566666766665553
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.012 Score=63.81 Aligned_cols=279 Identities=12% Similarity=0.106 Sum_probs=149.9
Q ss_pred eeccEEEEeeCCCeEEeeeccccceeeEeecCCCc-------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 96 ~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~-------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+.++.|+.++.++.+...|..||+.+=..+..... ..+.+++. +++.++.++ .+ ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~----~~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGT----FD------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEec----CC------CeEEEEEC
Confidence 44778888888999999999999988665432210 01111221 224455433 23 35555677
Q ss_pred ccCCCCCccceeeeccccC-------ceEEEEeCCCCeEEEEe--------cCCCcEEEeecCCCeEEEEEcC-------
Q 011970 169 RRGKPDSGFALFESESLKW-------PGFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------- 226 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~-------~~~V~Fs~~nGk~LaS~--------s~D~tiKlWdl~tg~~l~tl~~------- 226 (474)
++|+. +|+.+.... -.+..+. ++.+++.. ..++.+.-.|.+||+.+.....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 88886 444321110 0123443 45554432 2367788889999998876542
Q ss_pred ---------------CcEE-EEEEcC-CceEEEEecCC---------------CCccEEEEecCCCeEEEEEeecCccee
Q 011970 227 ---------------KHVQ-EIKISP-GIMLLIFNRSS---------------SHVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 227 ---------------~~V~-~vafSp-g~~la~~s~~s---------------~D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
..|| ..++.+ ++++.+.+.++ .+..|.-+|++||+.+-.++.-.+..+
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 1122 244553 45555553221 123688899999999988762112111
Q ss_pred E------EEEEe---cCCC---eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE-----------
Q 011970 275 K------VDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF----------- 331 (474)
Q Consensus 275 ~------V~F~~---~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~----------- 331 (474)
. ..+.+ -+++ .+++++.++.+...|.++|+.+-...... ..++.+| +.+++.+
T Consensus 281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCcccc
Confidence 1 11111 1222 35667899999999999999874321100 0112223 2232211
Q ss_pred ------c-CCcEEEEeC-CCcEEEEeccCC---CCcC-CCC-eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 332 ------R-NRTVAVWNF-RGELVTSFEDHL---LWHP-DCN-TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 332 ------s-D~tIklWd~-~G~ll~tl~gH~---~~~~-~~~-v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
. ++.+---|. +|+.+-+.+-.. .|.. .+. ...++. .|.+|..++. ||.|.-.|.
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald~ 423 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFDA 423 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEEC
Confidence 1 344545555 355544333210 0000 000 011222 4567776665 999999999
Q ss_pred CCCeEEEEecC
Q 011970 399 LTGKCLAKINA 409 (474)
Q Consensus 399 ~tG~cl~tl~g 409 (474)
.||+.+.+.+-
T Consensus 424 ~tG~~lW~~~~ 434 (488)
T cd00216 424 TTGKELWKFRT 434 (488)
T ss_pred CCCceeeEEEC
Confidence 99999988754
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.4e-05 Score=49.62 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.039 Score=57.81 Aligned_cols=247 Identities=18% Similarity=0.167 Sum_probs=141.4
Q ss_pred eEEEEEEeeCCCEEEEE-EeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-
Q 011970 131 VIRSLFYNKNNDSLITV-SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~-S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~- 208 (474)
.+....+||||+.||-+ +..|++. .++++.|+.+|+.... .+.. .. ..+++|. +||+.|.+...|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l~d--~i~~--~~-~~~~~W~-~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFLPD--GIEN--PK-FSSVSWS-DDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEEEE--EEEE--EE-SEEEEEC-TTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCcCC--cccc--cc-cceEEEe-CCCCEEEEEEeCcc
Confidence 34467889999988755 5555555 7789999999985221 1111 11 1138998 7999988877554
Q ss_pred ----------cEEEeecCCCe----EEEEEcCC-c-EEEEEEcC-CceEEEEecCCCC-ccEEEEecCCC----eEEEEE
Q 011970 209 ----------IYKVFDLKNYT----MLYSISDK-H-VQEIKISP-GIMLLIFNRSSSH-VPLKILSIEDG----TVLKVF 266 (474)
Q Consensus 209 ----------tiKlWdl~tg~----~l~tl~~~-~-V~~vafSp-g~~la~~s~~s~D-~tIkLWdi~tG----~~L~tl 266 (474)
.|++|.+.++. +++.-.+. . ...+..|+ +..|++.+..+.+ ..+.+-++.++ ...+.+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 37788887664 45544443 2 66888896 5666655554555 67889999875 233333
Q ss_pred eecCc-ceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCce---EEeccccCCceEEEEEcC-CCcEEEEEc-CC--
Q 011970 267 YHLLH-RNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR-- 334 (474)
Q Consensus 267 ~~h~~-~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~-- 334 (474)
..... ....+... ++.+.+-. .++.|---++.+... ..++..|...+.--.+.. .+.++++-. |+
T Consensus 273 ~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 273 SPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 32222 22333322 56555532 456666667777653 334445554333223333 445666665 65
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L-aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
.|+++|+. |.....+.--... .|..+...++++.+ ++++. --.-.+|--+|+.+|+..
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAG----SVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSS----EEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCEE
T ss_pred EEEEEECCCCcEEeeecCCcce----EEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCEE
Confidence 78899998 8877665533221 24555555655444 33332 123478889999998763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0034 Score=64.25 Aligned_cols=203 Identities=14% Similarity=0.189 Sum_probs=120.0
Q ss_pred EEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEEEe-----CCCcEEEEECC-
Q 011970 231 EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQ-----ENENLQILDVR- 301 (474)
Q Consensus 231 ~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~~~-----~D~tIkIWDv~- 301 (474)
.++++| ....+.++.-- -.-+.+||..+|+.++.+.-...+- -=..|+ ++|..|.+.- ..|-|-|||++
T Consensus 9 ~~a~~p~~~~avafaRRP-G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP-GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ceeeCCCCCeEEEEEeCC-CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECcC
Confidence 455565 33333333211 1136678888999887765211111 013465 6677777764 24889999999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc-----C---CcEE-----------EEeC-CCcEEEE--e--ccCCCCcC
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----N---RTVA-----------VWNF-RGELVTS--F--EDHLLWHP 357 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-----D---~tIk-----------lWd~-~G~ll~t--l--~gH~~~~~ 357 (474)
+-+.+..+.+|...+-.+.+.|||+.|+-+. . +-.| +-|. +|+++.. | +.|.+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS-- 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS-- 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc--
Confidence 5556677888888889999999998777653 1 2223 3445 4887765 6 557665
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
++-+++.+||..++-.=. +.+.. ..---|-+++ -|+.+.-+..-.. ....|
T Consensus 165 ---iRHLa~~~~G~V~~a~Q~-qg~~~---~~~PLva~~~--~g~~~~~~~~p~~--------------------~~~~l 215 (305)
T PF07433_consen 165 ---IRHLAVDGDGTVAFAMQY-QGDPG---DAPPLVALHR--RGGALRLLPAPEE--------------------QWRRL 215 (305)
T ss_pred ---eeeEEecCCCcEEEEEec-CCCCC---ccCCeEEEEc--CCCcceeccCChH--------------------HHHhh
Confidence 689999999998775422 11000 0011233332 2222322222110 00000
Q ss_pred cccccccccCEEEEEEcCCCCEE-EEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~L-aSgs~DgtVklWd 473 (474)
. ..|=||+|++||..+ +|+-+-+.+.+||
T Consensus 216 ~-------~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 216 N-------GYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred C-------CceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 0 288999999999876 5666888999996
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.021 Score=59.07 Aligned_cols=224 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred eeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC
Q 011970 138 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (474)
Q Consensus 138 spdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t 217 (474)
||||+.++.+.... ..+..=.-....|+|+.+++.. ++... ........|| |||+.||... |+.+-++++.+
T Consensus 1 S~d~~~~l~~~~~~-~~~r~s~~~~y~i~d~~~~~~~---~l~~~--~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYT-KQWRHSFKGDYYIYDIETGEIT---PLTPP--PPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEE-EESSSEEEEEEEEEETTTTEEE---ESS-E--ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECcE-EeeeeccceeEEEEecCCCceE---ECcCC--ccccccceee-cCCCeeEEEe-cCceEEEECCC
Confidence 68888776643321 1122222256778898887752 23332 2234478998 7999999986 67899999888
Q ss_pred CeEEE-EEcC---------C---------cEEEEEEcC-CceEEEEecC-------------C----------------C
Q 011970 218 YTMLY-SISD---------K---------HVQEIKISP-GIMLLIFNRS-------------S----------------S 248 (474)
Q Consensus 218 g~~l~-tl~~---------~---------~V~~vafSp-g~~la~~s~~-------------s----------------~ 248 (474)
++..+ |-.+ + .-..+-||| +..||...-+ . +
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 76443 1111 0 113477887 4444433221 0 0
Q ss_pred C----ccEEEEecCCCeEEE-EEe----ecCcceeEEEEEecCCCeEEEE--eC---CCcEEEEECCCCceEEeccc-cC
Q 011970 249 H----VPLKILSIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QE---NENLQILDVRNAELMEVSRT-EF 313 (474)
Q Consensus 249 D----~tIkLWdi~tG~~L~-tl~----~h~~~v~~V~F~~~~~~~ll~~--~~---D~tIkIWDv~tg~~~~~l~~-h~ 313 (474)
+ ..+.++|+++|+... ... .-..-+..+.|.+ ++.++++. .. .-.+.+.|+.++++...... ..
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 1 134567888886532 111 1234567888874 44446654 33 34456789988887543321 22
Q ss_pred Cce---EEEEEc-CCCcEEEEEc--CCcEEEEeC--CCcEEEEeccCCCCcCCCCe-eEEEECCCCCEEEE
Q 011970 314 MTP---SAFIFL-YENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLIIS 375 (474)
Q Consensus 314 ~~v---~sv~Fs-pdg~llaS~s--D~tIklWd~--~G~ll~tl~gH~~~~~~~~v-~svafSpDg~~LaS 375 (474)
.++ ..+.|. +++..++-.+ ||--.|+-+ +|...+-|+.. .|. | .-+.++++++.|.=
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEEE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEEE
Confidence 233 356665 6666666554 885555554 57777766643 442 5 45788898887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0039 Score=69.19 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=124.5
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--------CceEEEEecCCCCccEEEEec
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--------GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp--------g~~la~~s~~s~D~tIkLWdi 257 (474)
.+.-++|+ +||+++.+.+.+. +.|.-+..+. ...=+.++|++ ++..+.. .+.+|.+.|.
T Consensus 236 npd~v~~s-pdGk~afvTsyNs-------E~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V----~gn~V~VID~ 303 (635)
T PRK02888 236 NLDNVDTD-YDGKYAFSTCYNS-------EEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI----GGSKVPVVDG 303 (635)
T ss_pred CcccceEC-CCCCEEEEeccCc-------ccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE----CCCEEEEEEC
Confidence 45678998 7999988776432 3344344332 11224555553 2322222 1468999999
Q ss_pred CC----C-eEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCce------------E-EeccccCCceEE
Q 011970 258 ED----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------M-EVSRTEFMTPSA 318 (474)
Q Consensus 258 ~t----G-~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~------------~-~~l~~h~~~v~s 318 (474)
.+ | +.+..+.- ...-..|+++ ||+.++++++ .+.++-+.|+++.+- . ++.. ...+.-
T Consensus 304 ~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLH 379 (635)
T PRK02888 304 RKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLH 379 (635)
T ss_pred CccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcce
Confidence 88 4 56666652 1345778887 7888888865 799999999998551 1 2222 234566
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCCC-----------cEEEEeccCCCCcCCCCeeEEEE------CCCCCEEEEEecCC
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYI------TSDQDLIISYCKAE 380 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~G-----------~ll~tl~gH~~~~~~~~v~svaf------SpDg~~LaS~s~~~ 380 (474)
.+|.++|..+.|-- |..|-.||+.. ..+..+.-|... --+.- .|||++|+|.++-.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p------gh~~~~~g~t~~~dgk~l~~~nk~s 453 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP------GHNHASMGETKEADGKWLVSLNKFS 453 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc------ceeeecCCCcCCCCCCEEEEccccc
Confidence 78999999888877 99999999742 355555555442 12333 79999999998732
Q ss_pred CccccccC--CCCeEEEEeCCCCeEEEEecCCC
Q 011970 381 PEDQWMEG--SAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 381 ~~~~~~~s--~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+|-=+..| .-.+-.|-|| +|.-++-+..|.
T Consensus 454 kdrfl~vgpl~pen~qlidI-sgdkM~lv~d~p 485 (635)
T PRK02888 454 KDRFLPVGPLHPENDQLIDI-SGDKMKLVHDGP 485 (635)
T ss_pred cccccCCCCCCCCcceeEEc-cCCeeEEEecCC
Confidence 22111111 1123345666 676666664443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.038 Score=58.12 Aligned_cols=230 Identities=16% Similarity=0.149 Sum_probs=146.4
Q ss_pred CceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEEEEc-C-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE
Q 011970 187 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 187 ~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~tl~-~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
++..|... ++| +..+.-....++.+-+.....-..+.. + ..-+.++++| +.+..... ..+..|.+.|+++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~--~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT--GDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec--CCCCeEEEEcCcccce
Confidence 45567776 677 444443333355555533111111111 1 2345788886 55455543 3467899999888888
Q ss_pred EEEEe-ecCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE-c-CCcE
Q 011970 263 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 336 (474)
Q Consensus 263 L~tl~-~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~-s-D~tI 336 (474)
+.+.. +. .-..++|. ++++++-++. .++++.+.|-.+++.+++..... .+..++|.|+|+.+... . +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCCCeEEEEecCCCeE
Confidence 87776 32 33567765 6677777763 37999999999999887733222 44889999999955554 4 9999
Q ss_pred EEEeCCCcEEEE------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 337 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 337 klWd~~G~ll~t------l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
.+-|.++.-+.. ..-+... ..++++|||+++..... .+.|++|-.-|..+++...+...-
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999987654442 2222222 57999999997776654 222578888898888877652111
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC-CcEE
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVH 470 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D-gtVk 470 (474)
.. + .-..++++|+|+.++..... ++|.
T Consensus 251 ~~--------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 251 GS--------------------------------G-APRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cc--------------------------------C-CCCceeECCCCCEEEEEecCCCeEE
Confidence 10 0 23458999999999988543 4443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.061 Score=59.18 Aligned_cols=279 Identities=14% Similarity=0.165 Sum_probs=156.1
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCceE----------EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i----------~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+++|+.++.++.+...|.+||+.+=..+......+ +.+++. ++.|+.++. +. .+.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~---dg-------~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL---DA-------RLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC---CC-------EEEEE
Confidence 378888888899999999999998876553211112 122332 234444331 11 23333
Q ss_pred EeccCCCCCccceeeecc--c--cC-ce-EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEEEcC---------
Q 011970 167 YIRRGKPDSGFALFESES--L--KW-PG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD--------- 226 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~--~--~~-~~-~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~--------- 226 (474)
|..+|+. +|+... . .+ +. .-.. .+|++++..+ .++.|.-.|++||+.+.....
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 5577886 333210 0 00 00 1111 1566666433 368899999999998865431
Q ss_pred ------------------------CcEEE-EEEcC-CceEEEEecC-----C----CCc----cEEEEecCCCeEEEEEe
Q 011970 227 ------------------------KHVQE-IKISP-GIMLLIFNRS-----S----SHV----PLKILSIEDGTVLKVFY 267 (474)
Q Consensus 227 ------------------------~~V~~-vafSp-g~~la~~s~~-----s----~D~----tIkLWdi~tG~~L~tl~ 267 (474)
..||. .++-| -+++...... . .|. .|-=.|++||+..-.|+
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 12332 35555 3333333211 1 122 56668999999998887
Q ss_pred ecCcceeEEEE--------EecCCC--eEE-EEeCCCcEEEEECCCCceEEe--ccccCCce------------------
Q 011970 268 HLLHRNKKVDF--------IEQFNE--KLL-VKQENENLQILDVRNAELMEV--SRTEFMTP------------------ 316 (474)
Q Consensus 268 ~h~~~v~~V~F--------~~~~~~--~ll-~~~~D~tIkIWDv~tg~~~~~--l~~h~~~v------------------ 316 (474)
...|-++.-++ .+.+++ .++ .++.+|.+-+.|-+||+++.. ...+..++
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~ 368 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARS 368 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCc
Confidence 43343333221 112343 344 478999999999999998621 00000000
Q ss_pred ---------------------EEEEEcCCCcEEEEEc-C---------------------------------CcEEEEeC
Q 011970 317 ---------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNF 341 (474)
Q Consensus 317 ---------------------~sv~Fspdg~llaS~s-D---------------------------------~tIklWd~ 341 (474)
...++.|+..++-... + +.+.-||+
T Consensus 369 ~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~ 448 (527)
T TIGR03075 369 ADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDP 448 (527)
T ss_pred CCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeC
Confidence 0145566555543322 2 45778888
Q ss_pred -CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 342 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 342 -~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+|+.+-..+..... .-+. +.-.|.+++.+.. ||.++.+|..|||.|...+-..
T Consensus 449 ~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 449 ITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeeEecCCCCC-----CCcc-eEECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 48887766533222 1122 2225557776655 9999999999999998875543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.048 Score=56.71 Aligned_cols=279 Identities=12% Similarity=0.164 Sum_probs=153.7
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee---cc
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ES 184 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~---~~ 184 (474)
+.+-+.|-++|+.+-.+..+. .-.+.+||||+.+.+++.|-+-....=+---+.+||..+=++...+.+-.. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 378899999999988887644 445778999999998877654432222334556777654333111111110 01
Q ss_pred ccCceEEEEeCCCCeEEEE--ecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCCccEEEEecC-CC
Q 011970 185 LKWPGFVEFDDVNGKVLTY--SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-DG 260 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS--~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~-tG 260 (474)
..++...++| .|||+|.- .+.-..|-|=|++..+.+..+..-..+.|==+ +++ +.+.. .|+.+---.+. +|
T Consensus 94 ~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC---~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLC---GDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEE---TTSCEEEEEETSTS
T ss_pred cccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEe---cCCceEEEEECCCC
Confidence 2344467888 68887653 34566789999999998888764333333333 233 33321 24544444444 66
Q ss_pred eEEEEEeecCcceeEEEEE----ecCCCeEEEEeCCCcEEEEECCCCceE-----Eecc-cc--CCce----EEEEEcC-
Q 011970 261 TVLKVFYHLLHRNKKVDFI----EQFNEKLLVKQENENLQILDVRNAELM-----EVSR-TE--FMTP----SAFIFLY- 323 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~----~~~~~~ll~~~~D~tIkIWDv~tg~~~-----~~l~-~h--~~~v----~sv~Fsp- 323 (474)
+..++-..--+.....-|. ...+++++--+.+|.|+--|+...... ..+. .+ ..|- -.+++.+
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 6653322100111111121 123456777778888887777655421 1111 00 1111 1367775
Q ss_pred CCcEEEE------Ec--CCcEEEE--eC-CCcEEEEecc-CCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 011970 324 ENQLFLT------FR--NRTVAVW--NF-RGELVTSFED-HLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 324 dg~llaS------~s--D~tIklW--d~-~G~ll~tl~g-H~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~D 390 (474)
.+++++- ++ |.-=.|| |+ +++.+..++- |. +++|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4455543 12 4434455 55 4999998873 32 57999999998 5544432 37
Q ss_pred CeEEEEeCCCCeEEEEecCCC
Q 011970 391 GSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~gH~ 411 (474)
+++.++|..||+.++++++-.
T Consensus 312 ~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TEEEEEETTT--EEEEE---S
T ss_pred CeEEEEeCcCCcEEeehhccC
Confidence 999999999999999997644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=65.93 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=97.3
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSp 368 (474)
++.++|+++--+.+....---..|.+++-.| +.+++++|+ ||.|-|||.+ +. .+..|..|... +|.|-|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 5677888775443322222223477887776 455666777 9999999995 43 56678899876 68999999
Q ss_pred -CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc-----ccccccccccc
Q 011970 369 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL-----NKSSYIRSTVG 442 (474)
Q Consensus 369 -Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 442 (474)
++..|.+++. ||.+-.||. +++.|. +. .+. .+-++|+ .+..++.+-.+
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i~-~~~------------s~~s~WLsgD~v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-IS-NQA------------SVISSWLSGDPVKSRIEITSLLP 287 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-ec-Ccc------------ccccccccCCcccceEeeecccc
Confidence 6788888765 999999995 566665 21 111 0111111 11234444444
Q ss_pred ccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 443 EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 443 ~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+-...|. .|+--|..|++|+.-+.|.|.++
T Consensus 288 ~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 288 SRSLSIN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ccceeee--eeeccCceEEeccccceEEEecc
Confidence 3334554 46667899999999999998764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=74.60 Aligned_cols=148 Identities=8% Similarity=0.088 Sum_probs=105.5
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-----eEEEEEeecCcceeE
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-----TVLKVFYHLLHRNKK 275 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-----~~L~tl~~h~~~v~~ 275 (474)
++.+-+..|-|=|++||--.+-.+...|.+..|.- +..+..+-+ .+.|-..|++.+ .|-+.|- |...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 45567888889999888654444456788888884 555444422 356777787664 4555554 5566777
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCce---EEeccccCCceEEEE--EcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFI--FLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~--Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
+.-...++++|++++.+++|+|||++--+| ++...||-..-.-+- ..++...+++++ |---|||.++ |.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 665533567888899999999999998888 888889876444333 346667777777 8899999995 999998
Q ss_pred eccCC
Q 011970 349 FEDHL 353 (474)
Q Consensus 349 l~gH~ 353 (474)
+.-..
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 86433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=68.31 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=91.7
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCC-ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEE--EC
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DV 300 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D-~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIW--Dv 300 (474)
...+..-+|+| +..++..+..... ..+.++|+.+|+.-+.++. .......+|+ |+|.+|+.+. .|+...|| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCCCCccEEEEcC
Confidence 34677788997 5555444333333 3599999999987665551 2445667887 7888888864 66766655 88
Q ss_pred CCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEE--eCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 301 ~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklW--d~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
.+++..+. ..-...-..=.|+|||+.++=.+ .|.-.|| |.+|.-++.+.-+...- ..-.+||||++|+..
T Consensus 270 ~~~~~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-----~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKNLPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-----SNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCcceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-----cCccCCCCCCEEEEE
Confidence 88886553 22221112345899999998766 5544555 45677555444333320 134589999999987
Q ss_pred ec
Q 011970 377 CK 378 (474)
Q Consensus 377 s~ 378 (474)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 63
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.19 Score=57.15 Aligned_cols=243 Identities=10% Similarity=0.169 Sum_probs=136.0
Q ss_pred ceEEEEEEeeCCCEEEEEEee-cCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC-
Q 011970 130 EVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD- 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~-~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D- 207 (474)
-.+..+.+||||+.|+.+... |++. .++.+-++.+|+.... ... ..+ .+++|+ +||+.|.+...|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~------~~l~v~d~~tg~~l~~--~i~--~~~--~~~~w~-~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQ------YGIRFRNLETGNWYPE--LLD--NVE--PSFVWA-NDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEE------EEEEEEECCCCCCCCc--ccc--Ccc--eEEEEe-eCCCEEEEEEecC
Confidence 346778889999988765333 3333 6677778888874221 111 122 368998 689988887653
Q ss_pred -----CcEEEeecCCC----eEEEEEcCCcEE-EEEEc-CCceEEEEecCCCCccEEEEec--CCCeEEEEEeecCccee
Q 011970 208 -----SIYKVFDLKNY----TMLYSISDKHVQ-EIKIS-PGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 208 -----~tiKlWdl~tg----~~l~tl~~~~V~-~vafS-pg~~la~~s~~s~D~tIkLWdi--~tG~~L~tl~~h~~~v~ 274 (474)
..|.++++.|+ .+++.-.++..+ ++..+ ++..+++.+....+..+.+++. .+|+....+..-.....
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 35677788888 255554344333 44455 5666666665566677999984 35553222221111112
Q ss_pred EEEEEecCCCeEEEEe--CCCcEEEE--ECC-CCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcE
Q 011970 275 KVDFIEQFNEKLLVKQ--ENENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGEL 345 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~--~D~tIkIW--Dv~-tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~l 345 (474)
.+. ..++.+.... ...+-+|. ++. .++...+..... ..+..+.+. .+.++++.. ++.-+|+-+ .+..
T Consensus 274 ~~~---~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 274 SLD---HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEE---eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 221 2345555543 22344444 554 333333333323 367777777 556777777 776666654 4555
Q ss_pred EEEec-cCCCCcCCCCeeEEEEC--CC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 346 VTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 346 l~tl~-gH~~~~~~~~v~svafS--pD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+..+. +.... +..+.++ ++ +.++++++. -..-++|-.+|+.+++
T Consensus 350 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 350 VIGIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred eEEecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 55554 22111 2233445 44 456666653 2345788899988875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0096 Score=64.11 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=117.4
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
+|..++++ |||+.++-+ .|+.|-|......+-.... .-.+.+|++.+.+|+..+ ..+|+|..--+.+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~-g~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVC-GDGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEE-ETTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEE-cCCEEEEEEccCCcccccC---ceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 57789998 799988875 4888888874333332222 234678888788888743 467888521122222233
Q ss_pred eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCc--
Q 011970 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 344 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~-- 344 (474)
.-. ..+..+- ++.||.-..++.|.+||+++++.++...-. .|..|.|+++|+++|=.++.+|-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 311 1223332 355665545559999999999998775532 378999999999999999888999998755
Q ss_pred ----------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 345 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 345 ----------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
.+..+..-.. .|.+.+|-.| .+-|+. -.-||- +..|+.- +|. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~~-~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISE-----RIKSGCWVED---CFIYTT-----------SNHLKY--LVNGETG-IIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEEE-EEE-E-S--
T ss_pred ccccccCchhceEEEEEecc-----eeEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCcc-eEE-EcC--
Confidence 4444433112 2677888655 333443 346666 3455542 221 111
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
..++=+.+.|+.+.|+...+|+.|...
T Consensus 233 -------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 167778999988899999999988654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=78.24 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=103.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCc---------------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcE
Q 011970 283 NEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 345 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~---------------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~l 345 (474)
.++++.++.||-+|+..+.+.. .-+++.||...|.-+.|..+.|.|-|+. +|-|-+|=+ .|.-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 5789999999999999877532 1257899999999999999999998888 999999998 5764
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE--EEecCCCCCCCCccccCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL--AKINATNCSPKVDDELGSS 423 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl--~tl~gH~~~~~~~~~~~~~ 423 (474)
...+...... ..|.++.+..||+.|+.... ||.|-+=.+ .|.-+ +.|+|..
T Consensus 106 ~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYe-----------DGavIVGsv-dGNRIwgKeLkg~~------------ 158 (1189)
T KOG2041|consen 106 CEEMINNRNK---SVVVSMSWNLDGTKICIVYE-----------DGAVIVGSV-DGNRIWGKELKGQL------------ 158 (1189)
T ss_pred HHHHhhCcCc---cEEEEEEEcCCCcEEEEEEc-----------cCCEEEEee-ccceecchhcchhe------------
Confidence 3333333222 24889999999999998876 666543332 22221 1233322
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..-|.+|||.+.+.-+-.+|.++|+||
T Consensus 159 ------------------------l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 159 ------------------------LAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ------------------------ccceeecccHHHHHhhhcCCcEEEecc
Confidence 234788999999888989999999987
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.099 Score=54.44 Aligned_cols=265 Identities=12% Similarity=0.127 Sum_probs=153.0
Q ss_pred cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEeecCCCeEEEEE-
Q 011970 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSI- 224 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWdl~tg~~l~tl- 224 (474)
-++. ..+.+-|-..|++.. .-..+...-+..| |||+.+..++ ..-.|.+||.+|-+....+
T Consensus 13 ~~~~-~rv~viD~d~~k~lG------mi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 13 FHMT-SRVYVIDADSGKLLG------MIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp GGSS-EEEEEEETTTTEEEE------EEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred cccc-ceEEEEECCCCcEEE------EeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 3444 356677766666522 2112333357787 7999988765 2447999999998877744
Q ss_pred -cCC-c------EEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE
Q 011970 225 -SDK-H------VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 225 -~~~-~------V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
+.. . .+..++|+ |..+++..- +--..|-+-|++.++.+.++.- ...+-+- |..+..+.+-+.||.+
T Consensus 85 iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGSL 159 (342)
T ss_dssp ETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSCE
T ss_pred cCCcchheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCce
Confidence 432 2 23478885 556655543 3345799999999999998873 2223332 2234566677899999
Q ss_pred EEEECC-CCceEEe----ccccCCceE-EEEEcC-CCcEEEEEcCCcEEEEeCCCcE---EEEec------cCCCCcCCC
Q 011970 296 QILDVR-NAELMEV----SRTEFMTPS-AFIFLY-ENQLFLTFRNRTVAVWNFRGEL---VTSFE------DHLLWHPDC 359 (474)
Q Consensus 296 kIWDv~-tg~~~~~----l~~h~~~v~-sv~Fsp-dg~llaS~sD~tIklWd~~G~l---l~tl~------gH~~~~~~~ 359 (474)
.-..+. .|+..+. +....+.+. .-+++. +++++-.+-+|.|.-=|+.|+- ...++ .-..|.|+-
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 888777 5665433 211111111 112232 3344433336766666665442 22222 113455433
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccC-CC--CeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEG-SA--GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s-~D--gtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
. .-+++++..+.|..-=..+.+ ++ .| ..|-++|+.|+|.++.+.--.
T Consensus 240 ~-Q~~A~~~~~~rlyvLMh~g~~----gsHKdpgteVWv~D~~t~krv~Ri~l~~------------------------- 289 (342)
T PF06433_consen 240 W-QLIAYHAASGRLYVLMHQGGE----GSHKDPGTEVWVYDLKTHKRVARIPLEH------------------------- 289 (342)
T ss_dssp S-S-EEEETTTTEEEEEEEE--T----T-TTS-EEEEEEEETTTTEEEEEEEEEE-------------------------
T ss_pred e-eeeeeccccCeEEEEecCCCC----CCccCCceEEEEEECCCCeEEEEEeCCC-------------------------
Confidence 2 458888766555443221110 01 12 237777999999999997422
Q ss_pred ccccccccccCEEEEEEcCCCC-EEEEEc-CCCcEEEcc
Q 011970 437 IRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 473 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~-~LaSgs-~DgtVklWd 473 (474)
.+.||+.|.|.+ .|+..+ .++++.++|
T Consensus 290 ----------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ----------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ----------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ----------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 577899999998 666654 588999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.027 Score=56.30 Aligned_cols=191 Identities=18% Similarity=0.224 Sum_probs=109.5
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.|.|-.++ +-.|+|+|+.++|.++. . .. ..+ ++.=.+|+.....++-. ..-+..|++- -||++++
T Consensus 16 ~l~g~~~e-~SGLTy~pd~~tLfaV~--d-~~------~~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDE-LSGLTYNPDTGTLFAVQ--D-EP------GEI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT--S--EEEEEEETTTTEEEEEE--T-TT------TEE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEE
T ss_pred ECCCccCC-ccccEEcCCCCeEEEEE--C-CC------CEE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEE
Confidence 34554445 99999999999999875 1 22 233 23336788766555333 3346689997 6888888
Q ss_pred EecCCCcEEEeecCCCe------EEEEEc------C-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCC---CeEEEE
Q 011970 203 YSAQDSIYKVFDLKNYT------MLYSIS------D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKV 265 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~------~l~tl~------~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t---G~~L~t 265 (474)
+.-.++++.+.++...+ ....+. + ..+-.|++.| ++.|.+.. ...|.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceee
Confidence 77779999999983211 112222 1 3489999998 67777663 356788877653 333332
Q ss_pred Ee--------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccc-------cCCceEEEEEcCCCcEE
Q 011970 266 FY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT-------EFMTPSAFIFLYENQLF 328 (474)
Q Consensus 266 l~--------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~-------h~~~v~sv~Fspdg~ll 328 (474)
.. ....-..+++|.|..+..++-+++...|-++| .+|+.+.. |.. ....+..++|.++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 12233578888876666666688999999999 77887653 332 22478899999999999
Q ss_pred EEEc
Q 011970 329 LTFR 332 (474)
Q Consensus 329 aS~s 332 (474)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8875
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00045 Score=44.17 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.6
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
++++..+..|...+.++.|.|+++++++++ |++|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999998 99999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.23 Score=52.64 Aligned_cols=258 Identities=16% Similarity=0.193 Sum_probs=118.1
Q ss_pred ccEEEEeeCCCeEEee--eccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 98 RDIVFALAHSGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW--~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
..+|+++..||.-.|| |++|++-. .|.-+..+.....+.+|++..|+-+. ++ +++.-=++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4778888888877776 46655544 45433323344677788888776432 11 2222234444442
Q ss_pred ccceeeeccccCceEEEEe-CCCCeEEEEecC----------------------CCcEEEeecCCCeEEEEEc-CCcEEE
Q 011970 176 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 231 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs-~~nGk~LaS~s~----------------------D~tiKlWdl~tg~~l~tl~-~~~V~~ 231 (474)
..+++- .-.|.+...+. +.|+..++-.-. ...|.-=|++||+.--.+. ..++--
T Consensus 115 -~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 123332 12344333442 245665543221 2234444788888644444 468889
Q ss_pred EEEcC-CceEEEE-ecCCCCc-cEEEEecC-CCeEEEEEeecC-cceeEEEEEecCCCeEEE-E----eCCCcEEEEECC
Q 011970 232 IKISP-GIMLLIF-NRSSSHV-PLKILSIE-DGTVLKVFYHLL-HRNKKVDFIEQFNEKLLV-K----QENENLQILDVR 301 (474)
Q Consensus 232 vafSp-g~~la~~-s~~s~D~-tIkLWdi~-tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~-~----~~D~tIkIWDv~ 301 (474)
+.||| +..++.+ ..+.-|. +-|||-+. +|.-.+.+..|. ..+-.=.|-.++|.+|.- + +.+..|.=.|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99998 6666666 3332232 34788554 455555443221 222223344577877665 2 246677788999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc-CC----------------cEEEEeCC-CcEEEEeccC----------C
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFR-GELVTSFEDH----------L 353 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~----------------tIklWd~~-G~ll~tl~gH----------~ 353 (474)
+++-.... +..+.+-+.-++||+|++--. |. -|.|++++ ++. ..|.-| .
T Consensus 273 t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 273 TGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVLDGDR 349 (386)
T ss_dssp T--EEEEE--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------BTTBS
T ss_pred CCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceeecCCC
Confidence 98764432 112333444579999998644 53 45567775 443 223333 2
Q ss_pred C-CcCCCCeeEEEECCCCCEEEEEec
Q 011970 354 L-WHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 354 ~-~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
. -| ..+.|||||++++=.|.
T Consensus 350 q~~h-----Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 350 QVTH-----PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp STT---------EE-TTSSEEEEEE-
T ss_pred ccCC-----CCCccCCCCCEEEEECC
Confidence 2 12 35889999999997764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.22 Score=48.89 Aligned_cols=242 Identities=16% Similarity=0.204 Sum_probs=127.4
Q ss_pred ccEEEEeeCCCeEEeeeccc-cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~t-g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
++.|+.|.++| +-+++... .+....+.. ..|..+..-|+=+.|+.-+ + +++.+.++..=.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~---~~I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL---SSITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEPVST 71 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec---ceEEEEEEecccCEEEEEc----C-------CccEEEEchhhccccc
Confidence 89999999999 77888733 333333332 2399999999888777643 2 3555555432222110
Q ss_pred c-c-ee--------eeccccCceEEE-EeCC-CCeEEEEecCCCcEEEeecCCC-----eEEEEEc-CCcEEEEEEcCCc
Q 011970 177 F-A-LF--------ESESLKWPGFVE-FDDV-NGKVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKHVQEIKISPGI 238 (474)
Q Consensus 177 ~-~-lf--------~~~~~~~~~~V~-Fs~~-nGk~LaS~s~D~tiKlWdl~tg-----~~l~tl~-~~~V~~vafSpg~ 238 (474)
. + .+ .....+.+.+.+ -..+ ++..|+ .+..++|.||..... +.++.+. .+.+.+++|.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~ 150 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNK 150 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCE
Confidence 0 0 00 001122222222 0012 344444 445668999887643 3445554 4678888888444
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEE
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 318 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~s 318 (474)
++.+.. ....+-|+.+|+....+...... ..|. ...... .+..
T Consensus 151 -i~v~~~----~~f~~idl~~~~~~~l~~~~~~~---~~~~----------------------------~~~~~~-~~~~ 193 (275)
T PF00780_consen 151 -ICVGTS----KGFYLIDLNTGSPSELLDPSDSS---SSFK----------------------------SRNSSS-KPLG 193 (275)
T ss_pred -EEEEeC----CceEEEecCCCCceEEeCccCCc---chhh----------------------------hcccCC-CceE
Confidence 343322 34667777766553333210000 0000 000111 1222
Q ss_pred EEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 319 FIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 319 v~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+.-.+++.+|++.. ..--.=|.+|+..+ ++...|.. ...++++. ..+|+..+ ++.|.||++
T Consensus 194 ~~~~~~~e~Ll~~~-~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~~--~pyli~~~------------~~~iEV~~~ 254 (275)
T PF00780_consen 194 IFQLSDNEFLLCYD-NIGVFVNKNGEPSR--KSTIQWSS--APQSVAYS--SPYLIAFS------------SNSIEVRSL 254 (275)
T ss_pred EEEeCCceEEEEec-ceEEEEcCCCCcCc--ccEEEcCC--chhEEEEE--CCEEEEEC------------CCEEEEEEC
Confidence 22234456666543 33335566787655 33344532 23456553 34776554 577999999
Q ss_pred CCCeEEEEecCCC
Q 011970 399 LTGKCLAKINATN 411 (474)
Q Consensus 399 ~tG~cl~tl~gH~ 411 (474)
.+|++++++.+.+
T Consensus 255 ~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 255 ETGELVQTIPLPN 267 (275)
T ss_pred cCCcEEEEEECCC
Confidence 9999999998765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.019 Score=64.54 Aligned_cols=356 Identities=15% Similarity=0.161 Sum_probs=197.2
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC---C-CEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---N-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd---g-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
.-+||++...|.|.+||..++--++-|+. |...|..++|=|. . +.|+.. .+- .++-+|+.-+|+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI---h~s-------s~lvLwntdtG~k 147 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI---HGS-------STLVLWNTDTGEK 147 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe---cCC-------cEEEEEEccCCce
Confidence 56899999999999999999999999995 7788999998554 2 233321 122 3677888788885
Q ss_pred CCccceeeeccccCceE-EEEeCCC----------CeEEEE-----ecCCCcEEEeecCCC--eEEE----EE-----c-
Q 011970 174 DSGFALFESESLKWPGF-VEFDDVN----------GKVLTY-----SAQDSIYKVFDLKNY--TMLY----SI-----S- 225 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~-V~Fs~~n----------Gk~LaS-----~s~D~tiKlWdl~tg--~~l~----tl-----~- 225 (474)
+|....-.-+-+ +.|+|-| |.+|.+ .-.|+-.|.+.+++- .+.+ +. .
T Consensus 148 -----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 148 -----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred -----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 444321111112 3444333 333322 113555566655432 1000 00 0
Q ss_pred --CC-----cEEEEEEcC---CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC-eEEEEeCCCc
Q 011970 226 --DK-----HVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENEN 294 (474)
Q Consensus 226 --~~-----~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~t 294 (474)
.. .-.-+||+| +.+++++- ..+-|.|++--+||.+..-..+.++=|+..|.+.. -|.+.-.||-
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~p-----rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFP-----RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEec-----cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence 00 112378888 77788773 45999999998999887754555677777754443 4444569999
Q ss_pred EEEEECCC----------------CceEEecc-ccCCceEEEEEcCCCcEEEEE--cCCcEEEEeCC-CcEEEEec----
Q 011970 295 LQILDVRN----------------AELMEVSR-TEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFR-GELVTSFE---- 350 (474)
Q Consensus 295 IkIWDv~t----------------g~~~~~l~-~h~~~v~sv~Fspdg~llaS~--sD~tIklWd~~-G~ll~tl~---- 350 (474)
+-||=-+. |+..+... -+...+..-+--|-.+-.++- +++...+|++. |+.-....
T Consensus 298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i 377 (1062)
T KOG1912|consen 298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI 377 (1062)
T ss_pred EEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc
Confidence 99996544 22222211 122233333333543333322 47777789884 54311000
Q ss_pred cCCCCcCCCC-------eeEEEECCCC---------------CEEEEEecCCCccc-------cccCCCCeEEEEeCCCC
Q 011970 351 DHLLWHPDCN-------TNNIYITSDQ---------------DLIISYCKAEPEDQ-------WMEGSAGSINVSSILTG 401 (474)
Q Consensus 351 gH~~~~~~~~-------v~svafSpDg---------------~~LaS~s~~~~~~~-------~~~s~DgtIklWdi~tG 401 (474)
.-......|. ..=+.+|.|| ++-...+.+..+.. +.+.+.|||-+.|+.|+
T Consensus 378 el~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~ 457 (1062)
T KOG1912|consen 378 ELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN 457 (1062)
T ss_pred cccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch
Confidence 0000000000 0112234444 00000010000000 33456899999999999
Q ss_pred eEEEEecCCCCCCCCc-----------cccCCCC-CCcccccccccccccccccccc--------CEEEEEEcCCCCEEE
Q 011970 402 KCLAKINATNCSPKVD-----------DELGSSS-TGKSKKLNKSSYIRSTVGEALE--------DITSLFYDEERNEIY 461 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~--------~V~slafSpDg~~La 461 (474)
..-+.+..|+...++- .++...+ +|-.-+.--+.+++++++++.. .|+.+--|.-|++|+
T Consensus 458 ~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLa 537 (1062)
T KOG1912|consen 458 AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLA 537 (1062)
T ss_pred hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEE
Confidence 9888888888633321 0111111 1111122224556666664433 899999999999999
Q ss_pred EEcCCCcEEEccC
Q 011970 462 TGNRHGLVHVWSN 474 (474)
Q Consensus 462 Sgs~DgtVklWd~ 474 (474)
-.=+|.-+.+||.
T Consensus 538 i~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 538 ILFRREPLEIWDL 550 (1062)
T ss_pred EEecccchHHHhh
Confidence 9999999999984
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.16 Score=52.18 Aligned_cols=188 Identities=12% Similarity=0.151 Sum_probs=107.6
Q ss_pred EEEEecCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe----ec-Ccce
Q 011970 200 VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HL-LHRN 273 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~-l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~----~h-~~~v 273 (474)
++-+.-..+.|.-||..+|+. .+..+...-....+.+++.|+++ +.-+.++++++|.....+. +. ..+-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 444444566777777766643 22333333344566678888776 3458888888776633332 11 1222
Q ss_pred eEEEEEecCCCeEEEE--e-----C---CCcEEEEECC-CCceEEeccccCCceEEEEEcCCCcEEEEE-c-CCcEEEEe
Q 011970 274 KKVDFIEQFNEKLLVK--Q-----E---NENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWN 340 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~--~-----~---D~tIkIWDv~-tg~~~~~l~~h~~~v~sv~Fspdg~llaS~-s-D~tIklWd 340 (474)
+.+... ++| .+.++ + . -.+=.||=+. .|..++...+|...+..++||||++.|--+ + .+.|.-++
T Consensus 114 ND~~v~-pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 114 NDGVVD-PDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CceeEc-CCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 333332 333 34433 2 1 1122455555 677778878888889999999999766555 4 67777776
Q ss_pred CC---CcEE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCCeEEEEecCC
Q 011970 341 FR---GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 341 ~~---G~ll----~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D-gtIklWdi~tG~cl~tl~gH 410 (474)
+. |..- .-+.++..--| -.++.-.||.+-+++-. + +.|..|+-. |+.+..++-.
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~P----DG~~vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLP----DGMAVDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCC----CceEEeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 63 3211 11111111111 35666777887764432 3 388899965 9998888765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.018 Score=61.72 Aligned_cols=178 Identities=11% Similarity=0.115 Sum_probs=112.7
Q ss_pred EEEEeCCCCeEEEEecC---C-CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCC-CCccEEEEecCCCeEE
Q 011970 190 FVEFDDVNGKVLTYSAQ---D-SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSS-SHVPLKILSIEDGTVL 263 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~---D-~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s-~D~tIkLWdi~tG~~L 263 (474)
+-+|+ |+|+.|++-+. . ..+.++|+++|+--..+. ...--.-+|||++..++++... +...|.+-|+.+++ +
T Consensus 197 ~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 197 TPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 45777 79999888752 2 358899999988665554 3455568899855544454433 22357888987776 5
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEE--EECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc--CCc--
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQI--LDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRT-- 335 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkI--WDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s--D~t-- 335 (474)
..|..-.+......|+ |+|.+++..+ ..|.-+| .|+..+...+. +.+-... .-.+||||++++--+ ++.
T Consensus 275 ~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 275 PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCcee
Confidence 5566544555566766 7899998865 4554455 47777665443 3332222 345799999998776 454
Q ss_pred EEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 336 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 336 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
|-+-|.. |.-++.|..-.. ...-.+.|||+.|...+.
T Consensus 352 i~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 352 IDKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eEEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence 5566663 443555543222 235568899999987654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0038 Score=70.88 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=116.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
++.++.|+.-+.+--.|+++.+..++..-. ..-..+.-.++++|.+|. .|+|-|-|.+ -+.+++|..|++.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si---- 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI---- 220 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeecc--CCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce----
Confidence 467778887777777898888877663322 222455678999999999 9999999995 88999999999863
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC------CCCCc----cccCCCC-C-C--
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC------SPKVD----DELGSSS-T-G-- 426 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~------~~~~~----~~~~~~~-~-~-- 426 (474)
..|.-.|++|+|++.|.-.-. ---|.-||+||+..=+.|.-+.=|-+ +|... .++.++. + +
T Consensus 221 ---SDfDv~GNlLitCG~S~R~~~--l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 ---SDFDVQGNLLITCGYSMRRYN--LAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ---eeeeccCCeEEEeeccccccc--ccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 457779999999987422111 11378899999977666655544443 22211 2222221 0 0
Q ss_pred --ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 427 --KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 --~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-+++...+- |.... -..+.++.+|+.|+.||-|..+|-|++|.
T Consensus 296 ~~lsNP~~~~~-~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVK-MVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCcccee-EEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 001101100 00000 11489999999999999999999999994
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.038 Score=58.80 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.8
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~ 305 (474)
.|+|++. .|++|.++.-..+++-.+.|.. ++.|++=..||+++++|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 4889985 7899988875457888999864 7899998999999999987 444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.14 Score=55.58 Aligned_cols=226 Identities=12% Similarity=0.125 Sum_probs=126.6
Q ss_pred ccEEEEee---------CCCeEEeeeccccceeeEeecCCCc-------------------eEE-EEEEeeCCCEEEEEE
Q 011970 98 RDIVFALA---------HSGVCAAFSRETNRRICFLNVSPDE-------------------VIR-SLFYNKNNDSLITVS 148 (474)
Q Consensus 98 ~~~las~s---------~dgtiklW~~~tg~~l~~l~g~~~~-------------------~i~-sv~fspdg~~Lis~S 148 (474)
+++++.++ .+|.+...|.+||+.+=..+..+.. .|+ +.++.+.+.+++.++
T Consensus 156 ~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~ 235 (488)
T cd00216 156 KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGT 235 (488)
T ss_pred CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEEC
Confidence 56666665 3688999999999987765542111 122 456666666666654
Q ss_pred eecCCCc--------cceeeeEEEEeEeccCCCCCccceeeeccc---cCc----eEEEEe---CCCCe---EEEEecCC
Q 011970 149 VYASDNF--------SSLKCRSTKIEYIRRGKPDSGFALFESESL---KWP----GFVEFD---DVNGK---VLTYSAQD 207 (474)
Q Consensus 149 ~~~s~d~--------s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~---~~~----~~V~Fs---~~nGk---~LaS~s~D 207 (474)
.++.-+. ..+-...+--.|+.+|+. +|..... .|. ....+. +.+|+ ++..++.+
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~ 310 (488)
T cd00216 236 GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN 310 (488)
T ss_pred CCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC
Confidence 3321100 001112344456678885 4443210 010 011111 12454 56667789
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEec--------------CCCCccEEEEecCCCeEEEEEeecCc--
Q 011970 208 SIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR--------------SSSHVPLKILSIEDGTVLKVFYHLLH-- 271 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~--------------~s~D~tIkLWdi~tG~~L~tl~~h~~-- 271 (474)
+.+...|++||+.+...... ...++.+|+...+.... ...++.|.-.|+.+|+.+-+......
T Consensus 311 G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 99999999999988765421 12344556433332110 11245677789999998877763211
Q ss_pred ------ce--eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEEc
Q 011970 272 ------RN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 272 ------~v--~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~s 332 (474)
.. ..+. ..++.+.+++.|+.|..+|..+|+.+-..+ +......-++|..+|++.+..-
T Consensus 390 ~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 390 SWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred ccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence 01 1122 236788888899999999999999885433 2222233355666777766543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=68.92 Aligned_cols=200 Identities=11% Similarity=0.132 Sum_probs=129.2
Q ss_pred CCeEEEEecCCCcEEEeecCC--Ce-EEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--ec
Q 011970 197 NGKVLTYSAQDSIYKVFDLKN--YT-MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HL 269 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~t--g~-~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h 269 (474)
-.+++.++|.||.+|.|--.- |. .+.-+.. ..|.+++-|-+++|..+- +.-|+.+|+.|+++-....-++ ..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv-~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV-EDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec-cCcccceeEEEeeccchhhhcccccC
Confidence 567899999999999998432 22 1122222 346777778677666542 2238899999998754432221 11
Q ss_pred CcceeEEEEEecCCC---eEEEEe-CCCcEEEEECCCCceE--EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 270 LHRNKKVDFIEQFNE---KLLVKQ-ENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~---~ll~~~-~D~tIkIWDv~tg~~~--~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
-.. +.+.-..|. .++++. .++-|-+.|-....|. ..-.-|+.+|..+-++|-+..++|.. .|.|+-|..+
T Consensus 98 Pg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 98 PGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred CCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 111 111111121 344443 7899999997766543 22344999999998999999999988 9999999987
Q ss_pred Cc-------EEEEeccCCC--CcCCC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 343 GE-------LVTSFEDHLL--WHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 343 G~-------ll~tl~gH~~--~~~~~--~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|. +...++-.+. -.+-| +-.++.|+|+|..|+.-.. |..||+.+..||+.++.|..-.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhccc
Confidence 62 1111211110 00001 1257899999999998654 9999999999999999886543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=70.85 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=55.7
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 440 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (474)
|.+++++|+.+.++-||. ||+|.|||..++ +.++.-+.-
T Consensus 262 v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~--~t~~~ka~~---------------------------- 300 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE-----------DGSIILYDTTRG--VTLLAKAEF---------------------------- 300 (545)
T ss_pred ceEEecCcccceEEEEec-----------CCeEEEEEcCCC--eeeeeeecc----------------------------
Confidence 689999999999999998 999999997655 333322221
Q ss_pred ccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 441 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 441 ~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+-++|+|+|.+++.||.-|.+.+||+
T Consensus 301 ------~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 301 ------IPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ------cceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567999999999999999999999995
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=58.69 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=70.7
Q ss_pred EEEEecCCCcEEEeecCCCe-EEEEE-cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE-EEeecCcceeE
Q 011970 200 VLTYSAQDSIYKVFDLKNYT-MLYSI-SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~-~l~tl-~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~-tl~~h~~~v~~ 275 (474)
.+.--+.|. .+.|++..-+ ++... ..+.|.+++-+| ++-++..+ ++|+.+-|||.+.+.... .|.-|...++.
T Consensus 152 ~g~~n~~d~-~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg--t~dg~~~l~d~rn~~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 152 CGNWNAQDN-FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG--TDDGIVGLWDARNVAMPVSLLKAHKAEIWE 228 (319)
T ss_pred cceEeeccc-eeeecccccccccccccccccchhhhCCcccccEEEEe--cCCCeEEEEEcccccchHHHHHHhhhhhhh
Confidence 333344553 6688775433 22222 235699999887 44444442 568899999998875432 34568889999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
|-|.|..+++|+++++||.+--||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999999543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.51 Score=47.77 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=69.7
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
..+++.||+++.++.-|.++|+.+=.-- -...|.+-+.= =|+.++.+- .. ..+.+-+..+|.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GC----y~------g~lYfl~~~tGs~~w~- 88 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGC----YS------GGLYFLCVKTGSQIWN- 88 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEE----cc------CcEEEEEecchhheee-
Confidence 6889999999999999999998764211 11334443332 244443321 11 2333445578854332
Q ss_pred ceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 178 ~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
|.. +.++-...++ ++|..+-.++.|++...=|.+++.|+|..+
T Consensus 89 --f~~~~~vk~~a~~d---~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 89 --FVILETVKVRAQCD---FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred --eeehhhhccceEEc---CCCceEEEecCCCcEEEecccccceEEecc
Confidence 333 2344322344 468899999999999999999999999876
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.023 Score=63.95 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=94.9
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC-----CCEEEEEEeecCCCccceeeeEEEEeEe-cc
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-----NDSLITVSVYASDNFSSLKCRSTKIEYI-RR 170 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd-----g~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~ 170 (474)
.|+++||+|.||++-+-.+-|++..++++. + -.+.+|+++|| -+..+++ +.. .+-+..- --
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~-rpiksial~Pd~~~~~sk~fv~G----G~a-------glvL~er~wl 148 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-K-RPIKSIALHPDFSRQQSKQFVSG----GMA-------GLVLSERNWL 148 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-C-CcceeEEeccchhhhhhhheeec----Ccc-------eEEEehhhhh
Confidence 399999999999999999999999999986 4 78999999999 2234442 222 1212110 01
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcE------EEEEEcCCceEEE
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------QEIKISPGIMLLI 242 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V------~~vafSpg~~la~ 242 (474)
|..+. ..+. +.-+.|.++.+ .|.++|=++.+| |||+|+.+.+-+..++- ..+ ..+.|.|...|++
T Consensus 149 gnk~~-v~l~--~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 149 GNKDS-VVLS--EGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred cCccc-eeee--cCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 11111 1122 22455667887 589999998888 99999999887777751 222 2477778888888
Q ss_pred EecCCCCccEEEEecCC
Q 011970 243 FNRSSSHVPLKILSIED 259 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~t 259 (474)
+= + -+|+|..|+.
T Consensus 222 GW-~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 222 GW-G---DSVKICSIKK 234 (846)
T ss_pred ec-C---CeEEEEEEec
Confidence 72 2 3799998874
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.08 Score=59.71 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=147.2
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-----------ceEEEEecCCCCccEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-----------IMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-----------~~la~~s~~s~D~tIkLWd 256 (474)
++.++ |.| ++|+|+.. .|-|=|.-+++.+.++. ...|..|++.|- ..+++++ +.-.+.|-|||
T Consensus 20 A~Dw~-~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~d 95 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILVD 95 (1062)
T ss_pred ccccC-ccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEEE
Confidence 56776 566 89999854 57888999999998885 567999998851 1222222 23356899999
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCC---CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEE-E
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLT-F 331 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS-~ 331 (474)
...+..+..|++|...+..+.|.+..+ ..|++=..-.+|-|||..+|+.+-....-....+.|.|-| |.+.|.- +
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999999999999999998888864322 3455556778999999999998754322222344455554 3333322 2
Q ss_pred cCCcEEEEeC--------CCcEEEEeccCCCC------------cCCCCe--------eEEEECCCC--CEEEEEecCCC
Q 011970 332 RNRTVAVWNF--------RGELVTSFEDHLLW------------HPDCNT--------NNIYITSDQ--DLIISYCKAEP 381 (474)
Q Consensus 332 sD~tIklWd~--------~G~ll~tl~gH~~~------------~~~~~v--------~svafSpDg--~~LaS~s~~~~ 381 (474)
+.|.+-+-++ -|+..+.-.+|.+. +..|+. -..+|+|.- -+++.+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~----- 250 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF----- 250 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-----
Confidence 3555555542 24555555555541 011110 123456643 333433
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC--CE
Q 011970 382 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NE 459 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg--~~ 459 (474)
-.-+-|.|++=.+|+.++.--.+ .+-=|..-||+ ..
T Consensus 251 --------prellv~dle~~~~l~vvpier~----------------------------------~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIERG----------------------------------GAKFVDVLPDPRRDA 288 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEeccC----------------------------------CcceeEeccCCCcce
Confidence 45688999988888887743322 22224444554 56
Q ss_pred EEEEcCCCcEEEcc
Q 011970 460 IYTGNRHGLVHVWS 473 (474)
Q Consensus 460 LaSgs~DgtVklWd 473 (474)
|+.+=.||-+.+|-
T Consensus 289 LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRV 302 (1062)
T ss_pred EEEEecCCeEEEEE
Confidence 99999999988883
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.1 Score=58.43 Aligned_cols=256 Identities=11% Similarity=0.067 Sum_probs=150.2
Q ss_pred ccEEEEeeCCCeEEeeeccccce---------------eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 98 RDIVFALAHSGVCAAFSRETNRR---------------ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~---------------l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
..+||.|+.||..|+-.+.|... =++|.| |++.|+-|.||.++|.|-|. ..+ .-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtS----Dt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTS----DTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEecccccccccc----CCC------ce
Confidence 78999999999999998775221 236887 88999999999999988662 233 57
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLL 241 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~~~~V~~vafSpg~~la 241 (474)
|-+|-+-.|.......-- ..-.-+.+.++. .||+.+.-.=.||.|-|=.+...+. -+.|.+-....|.+||+..++
T Consensus 95 IiVWmlykgsW~EEMiNn--RnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINN--RNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHHHhhC--cCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 789988888752110000 001113355665 5666666555566554433322110 012223233457778776655
Q ss_pred EEecCCCCccEEEEecCCC-------eEEEEEee----cCcceeEEEE-------EecCCCeEEEEeCCCcEEEEECCCC
Q 011970 242 IFNRSSSHVPLKILSIEDG-------TVLKVFYH----LLHRNKKVDF-------IEQFNEKLLVKQENENLQILDVRNA 303 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG-------~~L~tl~~----h~~~v~~V~F-------~~~~~~~ll~~~~D~tIkIWDv~tg 303 (474)
.+..+ .+.+.|.|-+.- .|+-+..+ ..+.+-++.+ .+|+--.|++.-++|.+||---.+.
T Consensus 172 Lf~~a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 172 LFKKA--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred Hhhhc--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 55433 356677765321 12211111 1122333332 3456668888889999988644443
Q ss_pred -ceEEeccccCCceEEEEEcCCCcEEEEEc-C---------CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 304 -ELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 304 -~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D---------~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
+..-+-.| +.+...-|+++|..||..+ | +.|..+..-|+.+.+|+-... -+.++.+-.-|=.
T Consensus 250 ~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-----~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-----CITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-----eeeeeEEcCCceE
Confidence 33333223 6778888999999998764 2 245555555887877764433 2566666666655
Q ss_pred EEEE
Q 011970 373 IISY 376 (474)
Q Consensus 373 LaS~ 376 (474)
||.+
T Consensus 323 iA~A 326 (1189)
T KOG2041|consen 323 IAIA 326 (1189)
T ss_pred EEEE
Confidence 5554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.025 Score=61.80 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=58.6
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
+...+.+++++ |+.++++.|.+|++|.|||...+.-..+ .....|.-++|+|+|-+++.++ .|.+++||+.
T Consensus 258 L~s~v~~ca~s-p~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARS-PSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecC-cccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 45678888887 6788999999999999999877643322 3446788899999999999999 7999999975
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00035 Score=76.49 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=107.1
Q ss_pred ecCcceeEEEEEecCCCeEEEEe----CCCcEEEEECCCC--ceEEe--c-cccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELMEV--S-RTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg--~~~~~--l-~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
+|.....+++|+|-|-..|++|= .|-.++|||+.++ ...+. + .+-...+.++.+.-|-+++++|. .+.|+
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 45566788899877666666652 5788999999988 33321 1 11223455788889999999998 88999
Q ss_pred EEeCCCcEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeC-C-CCeEEEEecCCCC-C
Q 011970 338 VWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-L-TGKCLAKINATNC-S 413 (474)
Q Consensus 338 lWd~~G~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi-~-tG~cl~tl~gH~~-~ 413 (474)
+.|++-.|.+.-+-.+.. |..+.+.| .+.|+++.+ ||-|-|||. . -.+.+.++....+ +
T Consensus 180 ifdlRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N~~ 242 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNENKK 242 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCCCc
Confidence 999976665543333333 46788899 999999875 899999992 1 1223333332222 1
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcCC-CcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRH-GLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~D-gtVklWd~ 474 (474)
| +.+..++|.|-.. .|++-++| ++|++.|+
T Consensus 243 ~-------------------------------~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 243 P-------------------------------KQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred c-------------------------------cceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 1 2688999999764 35555544 67888764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.46 Score=49.78 Aligned_cols=204 Identities=14% Similarity=0.111 Sum_probs=106.6
Q ss_pred EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCC-ceEEEEecCCC--------CccEEE
Q 011970 190 FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPG-IMLLIFNRSSS--------HVPLKI 254 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg-~~la~~s~~s~--------D~tIkL 254 (474)
..++| |||++||.+- ...++++.|+++|+.+.. +....-..+.|+++ ..+........ ...|++
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 67887 7999999752 335799999999987653 33211223899975 44433332222 345888
Q ss_pred EecCCCeE--EEEEeecCcc--eeEEEEEecCCCeEEEEe---CC-CcEEEEECCCC----ceEEeccccCCceEEEEEc
Q 011970 255 LSIEDGTV--LKVFYHLLHR--NKKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNA----ELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 255 Wdi~tG~~--L~tl~~h~~~--v~~V~F~~~~~~~ll~~~---~D-~tIkIWDv~tg----~~~~~l~~h~~~v~sv~Fs 322 (474)
|.+.+++. .-.|+..... ...+..+ .++..+++.+ .+ ..+.+-|+.++ ...+.+..+...+...+-.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877642 2445543333 3456654 6777777643 33 55788898875 2223333333344444444
Q ss_pred CCCcEEEEEc----CCcEEEEeCC-Cc---EEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 011970 323 YENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 323 pdg~llaS~s----D~tIklWd~~-G~---ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtI 393 (474)
.++.+++... ++.|---++. .. -...+-.|..-+ .+..+.. .++ ++++.-. .....|
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~---~l~~~~~--~~~~Lvl~~~~---------~~~~~l 351 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV---SLEDVSL--FKDYLVLSYRE---------NGSSRL 351 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE---EEEEEEE--ETTEEEEEEEE---------TTEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce---eEEEEEE--ECCEEEEEEEE---------CCccEE
Confidence 4666665443 3444444553 22 122343443321 1344443 343 4444433 124568
Q ss_pred EEEeCCCCeEEEEecC
Q 011970 394 NVSSILTGKCLAKINA 409 (474)
Q Consensus 394 klWdi~tG~cl~tl~g 409 (474)
+++|+..|+....+..
T Consensus 352 ~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEETT-TEEEEEEES
T ss_pred EEEECCCCcEEeeecC
Confidence 8999864666655544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.72 Score=47.59 Aligned_cols=212 Identities=12% Similarity=0.107 Sum_probs=124.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecC------CCe-EEEEEcC-------CcEEEEEEcCCceEEEEe-----
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKISPGIMLLIFN----- 244 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~------tg~-~l~tl~~-------~~V~~vafSpg~~la~~s----- 244 (474)
.++-+|.++|+ |.|..-++...-++..|+|.. ..+ ++-+++. .....+.|+.+.-+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 46667799998 789999999889999999986 222 4556652 246677777533232211
Q ss_pred -----cCCCCccEEEEecCCCeEE---E--EEe-ecCcce-eEEEEEe-cCCCeEEEEe-CCCcEEEEECCCCceEEecc
Q 011970 245 -----RSSSHVPLKILSIEDGTVL---K--VFY-HLLHRN-KKVDFIE-QFNEKLLVKQ-ENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 245 -----~~s~D~tIkLWdi~tG~~L---~--tl~-~h~~~v-~~V~F~~-~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~ 310 (474)
.+++|+||.=|+-.-+... . .+. .-...| +.+++-. .-+.+|-++- ..++|.++| .+-..+.+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~~~~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFRPPPL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-CccccccC-C
Confidence 1255777777774333221 1 111 111233 3444431 1124444443 577787777 23322221 1
Q ss_pred ccCCce-EEEEEc------CCCcEEEEEc--------------CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC-
Q 011970 311 TEFMTP-SAFIFL------YENQLFLTFR--------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS- 368 (474)
Q Consensus 311 ~h~~~v-~sv~Fs------pdg~llaS~s--------------D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp- 368 (474)
+-+..+ --.-|. -.+++++|-. -|-|-+.|.+|++++.|. +... -+.. |.|+.-|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~-LNaP-WG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGR-LNAP-WGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCc-ccCC-ceeeeChh
Confidence 111111 000111 2466666642 368999999999999984 2222 1222 7899866
Q ss_pred -----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 369 -----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 369 -----Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
.|++|+--- + ||+|+.+|..+|+.+-.|+.-+.
T Consensus 255 ~FG~~sg~lLVGNF----------G-DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 255 SFGSLSGALLVGNF----------G-DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhCCCCCCeEEeec----------C-CceeEEecCCCCceeeeecCCCC
Confidence 688888543 2 99999999999999999987654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.81 Score=47.26 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=56.6
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE---EEEEc------CCcEEEEEEcCC----ceEEEEecC----CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKHVQEIKISPG----IMLLIFNRS----SS 248 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~---l~tl~------~~~V~~vafSpg----~~la~~s~~----s~ 248 (474)
..|++++|. |||++|++- ..|.|++.+ ++|.. +..+. ......|+|+|+ +.|.++... ..
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 457899998 799999865 599999999 66664 33442 246899999993 444443321 11
Q ss_pred C--ccEEEEecCCC-------eEE-EEEee---cCcceeEEEEEecCCCeEEEE
Q 011970 249 H--VPLKILSIEDG-------TVL-KVFYH---LLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 249 D--~tIkLWdi~tG-------~~L-~tl~~---h~~~v~~V~F~~~~~~~ll~~ 289 (474)
. ..|.-|....+ +.+ ..+.. ..|....+.|. |++ +|.++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG-~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG-KLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS-EEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC-cEEEE
Confidence 1 23444554444 112 22222 35666889998 445 66654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.7 Score=46.21 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=106.2
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC--eE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG--TV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG--~~ 262 (474)
+-.++|+|.++.+.|.....+.|---++ +|+.+.+++ + +..-+|++..++.+++.+ ..++.+.+.++.+. ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cCCCcEEEEEEecccccc
Confidence 3379998545666666777777766664 689888776 2 568889999777777764 33677888877321 11
Q ss_pred ----EEEEe-e----cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---CceEEe--------ccccCCceEEEEEc
Q 011970 263 ----LKVFY-H----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AELMEV--------SRTEFMTPSAFIFL 322 (474)
Q Consensus 263 ----L~tl~-~----h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t---g~~~~~--------l~~h~~~v~sv~Fs 322 (474)
.+.+. + +....-.|+|. +.++.|++..+....+|+.+.. +..+.. .......+++++|.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 12232 1 22335789987 4567888888888888888764 222221 12234578999998
Q ss_pred CC-CcEEEEEc-CCcEEEEeCCCcEEEEec--c--CC--CCcCCCCeeEEEECCCCCEEEEE
Q 011970 323 YE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HL--LWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 323 pd-g~llaS~s-D~tIklWd~~G~ll~tl~--g--H~--~~~~~~~v~svafSpDg~~LaS~ 376 (474)
|. |++++-+. ++.|-..|.+|+.+..+. . |. ..++. -..|+|.|||.+.++.
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Q--pEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQ--PEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---S--EEEEEE-TT--EEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCC--ccEEEECCCCCEEEEc
Confidence 75 56666666 999999998899876443 2 11 01111 3689999999988873
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.8 Score=54.17 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=117.7
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
..|.++.|- ..-|..+..+|.+-+=|.+|...-+ -|.-++.|-+..||||+++++.+. +... |-.- ++-|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~Dee~l~liT--~~~t---ll~m-T~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDEELLALIT--GRQT---LLFM-TKDF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCCcEEEEEe--CCcE---EEEE-eccc
Confidence 467777777 4445555667777777888766433 233567799999999999988754 2111 1111 1111
Q ss_pred Ee-----------ccCCCCC------c---------cceeee-cc---------ccCceEEEEeCCCCeEEEEec----C
Q 011970 167 YI-----------RRGKPDS------G---------FALFES-ES---------LKWPGFVEFDDVNGKVLTYSA----Q 206 (474)
Q Consensus 167 ~i-----------~~G~~~~------~---------~~lf~~-~~---------~~~~~~V~Fs~~nGk~LaS~s----~ 206 (474)
++ +.+++.. . +..++. .+ -.+--+|++- -||++.|.+. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEeccC
Confidence 11 1111100 0 000000 00 0111147775 6999988733 3
Q ss_pred C-CcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe----ecCcceeEEEE
Q 011970 207 D-SIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLLHRNKKVDF 278 (474)
Q Consensus 207 D-~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~----~h~~~v~~V~F 278 (474)
| +.|||||-+ |.+-.+-. ...=.++++=| |..+|+.....+|..|.++- .+|-.-..|. -....+..++|
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeee
Confidence 5 899999976 65543322 12223577778 88899888888888898887 4565444433 11233788999
Q ss_pred EecCCCeEEEE----eCCCcEEEEECCCCc
Q 011970 279 IEQFNEKLLVK----QENENLQILDVRNAE 304 (474)
Q Consensus 279 ~~~~~~~ll~~----~~D~tIkIWDv~tg~ 304 (474)
++ ++-+|+. .+...|++|-+.+-.
T Consensus 298 ns--~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NS--NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cC--CCCceeeeecccccceEEEEEecCeE
Confidence 75 3444443 356669999877643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0004 Score=76.03 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=123.9
Q ss_pred ccEEEEeeCCCeEEeeecccc--ceeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccC--C
Q 011970 98 RDIVFALAHSGVCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRG--K 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg--~~l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~ 172 (474)
+-+++.|+-+|.|.+=+...- .---+.++ +...-.+++|++-. ..||. +-+.++.= -.++|||+.++ .
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~-~ar~Ct~lAwneLDtn~LAa-gldkhrnd-----s~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPG-YARPCTSLAWNELDTNHLAA-GLDKHRND-----SSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceeccc-ccccccccccccccHHHHHh-hhhhhccc-----CCccceecccccCC
Confidence 467888888888888654311 11123343 44567899998863 33543 33332221 35678999888 3
Q ss_pred CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEEcCCcEEEEEEcC--CceEEEEecCCCC
Q 011970 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKISP--GIMLLIFNRSSSH 249 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl~~~~V~~vafSp--g~~la~~s~~s~D 249 (474)
+-.. ++|..+.+.-+.+|.+. -|-++|.+|..-+.|+++|+.. -.-...+....|+.+.++| .++++++ .|
T Consensus 143 Pke~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~d 216 (783)
T KOG1008|consen 143 PKES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SD 216 (783)
T ss_pred Cccc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----cc
Confidence 3222 34444334445578887 7899999999999999999862 2222344456788999998 7777754 37
Q ss_pred ccEEEEecC-C-CeEEEEEeecC----cceeEEEEEecCCCeEEEEe-CCCcEEEEECCC
Q 011970 250 VPLKILSIE-D-GTVLKVFYHLL----HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 302 (474)
Q Consensus 250 ~tIkLWdi~-t-G~~L~tl~~h~----~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t 302 (474)
+.|-+||.. . -..+.++.+.. .++..++++|-.++.+++-+ .-++|+++|++.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 789999931 1 12233333222 24789999988888888876 569999999874
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.63 Score=49.62 Aligned_cols=49 Identities=12% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 209 IYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
.|+|++ ..|+++.++. .+.|-.+.|+.+..|++-. .|+++++.|+. |+.
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 599999 4788887765 5789999999766666653 37899999986 565
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.6 Score=49.71 Aligned_cols=199 Identities=7% Similarity=0.022 Sum_probs=105.8
Q ss_pred EEEEeCCCCeEEEEecC-----CCcEEEeecCCCeEEE-EEcCCcEEEEEEcC-CceEEEEecCC---CCccEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKISP-GIMLLIFNRSS---SHVPLKILSIED 259 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~tg~~l~-tl~~~~V~~vafSp-g~~la~~s~~s---~D~tIkLWdi~t 259 (474)
.+.+| |||++||.+.. ..++++=|+.+|+.+- .+.+.. ..++|+| +..++...... ....|.++++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 67787 79999997643 3468888998887432 222222 4689996 44444443211 123588889999
Q ss_pred C--eEEEEEeecCcceeEEEEEecCCCeEEEEe---CCCcEEEEEC--CCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 260 G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 260 G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv--~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+ +-...|+......+-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ..++.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333344432233331222334677777643 5678999994 34553333322223333333 44556666554
Q ss_pred -C-CcEEEEeC--C--CcEEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEE
Q 011970 333 -N-RTVAVWNF--R--GELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCL 404 (474)
Q Consensus 333 -D-~tIklWd~--~--G~ll~tl~gH-~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG~cl 404 (474)
+ ..-+|..+ . ++ .+.+-.| ..+ .+..+.++ .+.+++++.. ++.-+|+-+. .++.+
T Consensus 288 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~----~i~~~~~~-~~~l~~~~~~-----------~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQ-WEELIPPRENI----MLEGFTLF-TDWLVVEERQ-----------RGLTSLRQINRKTREV 350 (686)
T ss_pred CCCCCceEEEecCCCccc-CeEEECCCCCC----EEEEEEEE-CCEEEEEEEe-----------CCEEEEEEEcCCCCce
Confidence 2 24555543 2 22 2334444 332 26778877 3366666654 5555554332 24445
Q ss_pred EEec
Q 011970 405 AKIN 408 (474)
Q Consensus 405 ~tl~ 408 (474)
..|.
T Consensus 351 ~~l~ 354 (686)
T PRK10115 351 IGIA 354 (686)
T ss_pred EEec
Confidence 5543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.77 Score=46.64 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred ccEEEEecCCC----eEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccc-cCCceEEEEE
Q 011970 250 VPLKILSIEDG----TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-EFMTPSAFIF 321 (474)
Q Consensus 250 ~tIkLWdi~tG----~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~-h~~~v~sv~F 321 (474)
+.|.+.++... ..|+.+. ...+.|.++. +.+++|+++ .++.|.+|++...+ ++..-.. ....+.++.-
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~---~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAIC---SFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEE---EETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhh---hhCCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 66888888874 2333221 2346777777 447885555 46999999999988 6654222 2224555433
Q ss_pred cCCCcEEEEEc-CCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 322 LYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+.+++.|. .+.|.+..+ +++.+..+....... .+.++.|-+|++.++.+.. +|.|.++..
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~---~v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~ 201 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR---WVTAAEFLVDEDTIIVGDK-----------DGNLFVLRY 201 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B---EEEEEEEE-SSSEEEEEET-----------TSEEEEEEE
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc---cEEEEEEecCCcEEEEEcC-----------CCeEEEEEE
Confidence 355777776 777777654 465444443322221 2678888878777777665 899988876
Q ss_pred C
Q 011970 399 L 399 (474)
Q Consensus 399 ~ 399 (474)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 4
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.23 Score=58.44 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=74.8
Q ss_pred EEEEEcCCCcEEEEE-----cC-CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 317 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 317 ~sv~Fspdg~llaS~-----sD-~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
.+|.|--||++||.+ .+ ++|++||.+|.+-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999983 36 8999999887664333222211 135889999999998654 2457
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE---EcCCC
Q 011970 391 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHG 467 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS---gs~Dg 467 (474)
++|.++. .+|-. |..+ .-..|.--..|..|+|+.++..||. .....
T Consensus 266 ~~IvffE-rNGL~------hg~f------------------------~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGEF------------------------VLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred CcEEEEe-cCCcc------cccc------------------------ccCCcccccchheeeecCCCCceeeeecccccc
Confidence 7899987 45532 3210 0000100013889999999999997 55666
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.|+||-
T Consensus 315 ~v~lwt 320 (1265)
T KOG1920|consen 315 LVQLWT 320 (1265)
T ss_pred eEEEEE
Confidence 699993
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.54 Score=47.74 Aligned_cols=172 Identities=12% Similarity=0.133 Sum_probs=103.3
Q ss_pred cEEEEecCCCeEEEEEeec-CcceeEEEEEecC------CCeEEEEe-----C-----CCcEEEEECCCC-----ceEEe
Q 011970 251 PLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNA-----ELMEV 308 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h-~~~v~~V~F~~~~------~~~ll~~~-----~-----D~tIkIWDv~tg-----~~~~~ 308 (474)
.|+|-|-.+.+.+.+++-. ...+.++...... ...+++|. + .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4788888888888777622 2344554443322 34566652 1 178999999985 33222
Q ss_pred -ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 309 -SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 309 -l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.....+.|.+++-- +|+ |+.+.+++|.+|++. .+ ++..-.-+... .+.++ +.-+++|+.|..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~----~i~sl--~~~~~~I~vgD~------- 147 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPF----YITSL--SVFKNYILVGDA------- 147 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSS----SEEEE--EEETTEEEEEES-------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceE----EEEEE--eccccEEEEEEc-------
Confidence 12345678888643 555 656667999999995 55 54432222221 13344 444668887764
Q ss_pred ccCCCCeEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 386 MEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 386 ~~s~DgtIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
.+.|-+.... .++.+..+..... | .+|+++.|-+|++.++.+.
T Consensus 148 ----~~sv~~~~~~~~~~~l~~va~d~~-~-------------------------------~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 148 ----MKSVSLLRYDEENNKLILVARDYQ-P-------------------------------RWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp ----SSSEEEEEEETTTE-EEEEEEESS---------------------------------BEEEEEEEE-SSSEEEEEE
T ss_pred ----ccCEEEEEEEccCCEEEEEEecCC-C-------------------------------ccEEEEEEecCCcEEEEEc
Confidence 5677776432 3454444432221 1 1799999998888999999
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.+|.|.+..
T Consensus 192 ~~gnl~~l~ 200 (321)
T PF03178_consen 192 KDGNLFVLR 200 (321)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999998763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.22 Score=53.75 Aligned_cols=134 Identities=13% Similarity=0.233 Sum_probs=76.4
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE-eCCCcEEEEec
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFE 350 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW-d~~G~ll~tl~ 350 (474)
..++.++ |.+..+++ ..|+.--|+......-... +.-..++|.+.++ +|.-. +++|+|. |++.+-+.++.
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 4677776 44455555 7788888887443332222 2334688999776 55554 8999994 66544333332
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
-.. .+..|.- |.+|+..+ ++.|-++|+++++.++.+.-.
T Consensus 107 ~~~------~~~~If~---G~LL~~~~------------~~~i~~yDw~~~~~i~~i~v~-------------------- 145 (443)
T PF04053_consen 107 LPF------SVEKIFG---GNLLGVKS------------SDFICFYDWETGKLIRRIDVS-------------------- 145 (443)
T ss_dssp -SS-------EEEEE----SSSEEEEE------------TTEEEEE-TTT--EEEEESS---------------------
T ss_pred CCc------ccceEEc---CcEEEEEC------------CCCEEEEEhhHcceeeEEecC--------------------
Confidence 211 1455644 99888765 568999999999999999532
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|..|.||+||+.+|=.+.|. +.+.
T Consensus 146 ----------------~vk~V~Ws~~g~~val~t~~~-i~il 170 (443)
T PF04053_consen 146 ----------------AVKYVIWSDDGELVALVTKDS-IYIL 170 (443)
T ss_dssp ----------------E-EEEEE-TTSSEEEEE-S-S-EEEE
T ss_pred ----------------CCcEEEEECCCCEEEEEeCCe-EEEE
Confidence 578899999999999888764 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=61.53 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=63.0
Q ss_pred eEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 316 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+.-+.++|...++|... +|.|-+.-++-+.+.++.-|...+ +.++++-|||++||-|-+ ||+|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v----~~sL~W~~DGkllaVg~k-----------dG~I~ 87 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENV----TASLCWRPDGKLLAVGFK-----------DGTIR 87 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCcc----ceeeeecCCCCEEEEEec-----------CCeEE
Confidence 45577899999999998 998888887777777776454432 249999999999999987 99999
Q ss_pred EEeCCCCeEEEEe
Q 011970 395 VSSILTGKCLAKI 407 (474)
Q Consensus 395 lWdi~tG~cl~tl 407 (474)
|-|+.+|..+...
T Consensus 88 L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 88 LHDVEKGGRLVSF 100 (665)
T ss_pred EEEccCCCceecc
Confidence 9999999887663
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.55 Score=52.57 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=97.2
Q ss_pred ceEEEEEEeeCCCEEEEEEe--ecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 130 EVIRSLFYNKNNDSLITVSV--YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~--~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
..+.+.++||||+.+|.+-. +...| ..-.||=...|.-. .++..... ...-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~~--~~lt~g~~---~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGVA--VQVLEGHS---LTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCcc--eeeecCCC---CCCceEC-CCCCceEEEecC
Confidence 46789999999999887652 11112 23344443323321 12322212 2246787 788877776532
Q ss_pred -CcE---------EEe--ecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEE---EecCCCeE-E---EEEe
Q 011970 208 -SIY---------KVF--DLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKI---LSIEDGTV-L---KVFY 267 (474)
Q Consensus 208 -~ti---------KlW--dl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkL---Wdi~tG~~-L---~tl~ 267 (474)
... .+| ++..|+....+ +..|.++++|| |.++|... ++.|.+ =....|+. | ..+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEee
Confidence 122 233 44444332211 35699999998 44555443 234554 45556751 1 1122
Q ss_pred -ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccc--cCCceEEEEEcCCCcEEEEEcCCcEE
Q 011970 268 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRT--EFMTPSAFIFLYENQLFLTFRNRTVA 337 (474)
Q Consensus 268 -~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~--h~~~v~sv~Fspdg~llaS~sD~tIk 337 (474)
+....+..++|.. ++.|+++..+..-.+|-+.- |.....+.+ ....+.+|+=++ +.++++.+++.++
T Consensus 493 ~~l~~~~~~l~W~~--~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~~ 563 (591)
T PRK13616 493 PGLGDTAVSLDWRT--GDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVLQ 563 (591)
T ss_pred cccCCccccceEec--CCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceEE
Confidence 2223357788863 56677765444444554331 332222222 355667776666 4566665566443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.011 Score=58.01 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=85.6
Q ss_pred eEEEEeCCCcEEEEECCCCceE--Ee-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCC
Q 011970 285 KLLVKQENENLQILDVRNAELM--EV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPD 358 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~--~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~ 358 (474)
.+++.+.|++|+=.+++--+.- .. +....+.| ---+..++.|. |+.|.+|+.+ |+..--...-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v-----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--- 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV-----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--- 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee-----cccCceEEeecccceEEEecCCccchHHHhhhccccc---
Confidence 3566788888888877643321 11 00011111 12234456666 9999999975 5432211111111
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
....|....++.+...++. ||.||.|+++-++.+-....|+.
T Consensus 104 -i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~-------------------------- 145 (238)
T KOG2444|consen 104 -IDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF-------------------------- 145 (238)
T ss_pred -ceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC--------------------------
Confidence 1234555556666666654 99999999999999888877873
Q ss_pred ccccccccCEEEEEEcCCCCEEEEE--cCCCcEEEccC
Q 011970 439 STVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 474 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSg--s~DgtVklWd~ 474 (474)
+.+..+.-+--++.|+++ |.|.++|.|++
T Consensus 146 -------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 145556667777788888 99999999974
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.7 Score=44.86 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=121.3
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------CCcEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIK 233 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~~~V~~va 233 (474)
..+.-|+...|+. ..|.... .......++ ..|.+++ +. .-+.+++++++.....+. ...-.+++
T Consensus 47 ~~i~r~~~~~g~~----~~~~~p~-~~~~~~~~d-~~g~Lv~-~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKK----RVFPSPG-GFSSGALID-AGGRLIA-CE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCce----EEEECCC-Ccccceeec-CCCeEEE-Ec--cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4444455555553 2344311 112235665 4565444 32 346788887766533332 13456788
Q ss_pred EcCCceEEEEecCC----CC--c-cEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--
Q 011970 234 ISPGIMLLIFNRSS----SH--V-PLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-- 302 (474)
Q Consensus 234 fSpg~~la~~s~~s----~D--~-tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t-- 302 (474)
+.|++.+..+.... .. . .-.||-+. .|...+-+..|...-+.++|+ |++..+... +..+.|.-+++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCccc
Confidence 88877766664430 11 1 12466665 678877777666666899998 667777776 5668888777652
Q ss_pred Cce-----EEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE-CCCCCEEE
Q 011970 303 AEL-----MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLII 374 (474)
Q Consensus 303 g~~-----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDg~~La 374 (474)
+.. ......+...+-.++.--||.+.+++- ++ -|..|+.+|+++...+-+..+ +.+++| .|+.+.|.
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~ 271 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLY 271 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEE
Confidence 221 112223445666667777899887554 54 899999999999998877554 345555 56666666
Q ss_pred EEe
Q 011970 375 SYC 377 (474)
Q Consensus 375 S~s 377 (474)
..+
T Consensus 272 iTs 274 (307)
T COG3386 272 ITS 274 (307)
T ss_pred EEe
Confidence 554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.2 Score=43.14 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=97.8
Q ss_pred CeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEE-EeC
Q 011970 218 YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQE 291 (474)
Q Consensus 218 g~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~-~~~ 291 (474)
++.+.+.+. ...+.+.|.+++.|.-++.--+...|+.+|++||+.++...-. ... ..++.. +++|.. .=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 455666652 4689999954444444332233457999999999998765521 112 223322 344443 346
Q ss_pred CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 292 D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
+++.-+||..+-+.+.++.-. ..-|.++ +.+..++.|-+..++..+|. +-+.+.+++-...-.+-..+|.+-+- ||
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~-~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP-GEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S-SS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred CCeEEEEccccceEEEEEecC-CcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 789999999999988875432 3557776 33444444434678888887 35555554432221111235666664 78
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+.|=-=. ...|-.-|..||+++..+.-
T Consensus 186 ~IyANVW~-----------td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 186 KIYANVWQ-----------TDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EEEEEETT-----------SSEEEEEETTT-BEEEEEE-
T ss_pred EEEEEeCC-----------CCeEEEEeCCCCeEEEEEEh
Confidence 77775433 34455568899999888743
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=60.37 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=64.5
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
-+-+|... +++++|||... +|..++. +.+|||-|+.|-.|+.+...|.
T Consensus 188 ~lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~--------------- 236 (463)
T KOG1645|consen 188 ILPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN--------------- 236 (463)
T ss_pred cccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC---------------
Confidence 34455554 68999999999 7777765 9999999999999999999885
Q ss_pred ccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.+||++|+-|. +.||.|-..|.|-++|+
T Consensus 237 --------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 --------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred --------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 79999999865 67999999999999885
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.069 Score=61.08 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCC------CccEEEEecCCCeEEEEEe
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSS------HVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~------D~tIkLWdi~tG~~L~tl~ 267 (474)
.|+++|-.|.+-|+|-|=|+++-+.++++.. +.|.++..+ |..|++.+-... |.-||+||++.=+.|.-+.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5899999999999999999999999999864 345444433 677777654322 4468999997654444333
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEE---CCCCce-EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILD---VRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWD---v~tg~~-~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
-+-++ .=+.|.|.-..++++.+.-|..++-| +.+-.. +.-...-...+.++.+|+.|+.+|-+. +|.|.+|--
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22222 22445554457888899999999988 333211 111222334588999999999999998 999999984
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.6 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred eeEEEEEecCC---CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE
Q 011970 273 NKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 273 v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l 345 (474)
|.++++...++ ..|+++++|..||+|+ ..+++... .+...|.+++-.+.++ |+.+- +|||-+++-.-.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei-~e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI-TETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE-ecccceEEEEEcCCCE-EEEEecCCEEEEEeCccee
Confidence 44555554333 4789999999999997 33444332 3456788888777765 55555 9999999864333
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.1 Score=42.31 Aligned_cols=258 Identities=13% Similarity=0.050 Sum_probs=123.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~s-v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
||.++-|.++|.+-+-+..||..+-.+.- - +.|.+ -.--++++.|-.+| .| ++...-|+++-.+.-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~-~~vk~~a~~d~~~glIycgs----hd------~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-L-ETVKVRAQCDFDGGLIYCGS----HD------GNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee-h-hhhccceEEcCCCceEEEec----CC------CcEEEecccccceEEe
Confidence 88899999999999999999955544442 2 33333 34477888776654 44 4544455554443100
Q ss_pred c----ceeeeccccC-ceEEEEeCCCCeEEEEecCCCcE-EEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCC
Q 011970 177 F----ALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSH 249 (474)
Q Consensus 177 ~----~lf~~~~~~~-~~~V~Fs~~nGk~LaS~s~D~ti-KlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D 249 (474)
. ..|..--+.. ..++-|..-.|.+||..-.++.- -+|-..-+.+++.-+.---.++.+. -++.|++++..
T Consensus 131 skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s--- 207 (354)
T KOG4649|consen 131 SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES--- 207 (354)
T ss_pred cccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC---
Confidence 0 0122100000 11222222357777766555521 2554333333321110001123332 14455555321
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE--------EEEECCCCceEEeccccCCceEEEEE
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL--------QILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI--------kIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
+ =.+|...|+-.+-.-....+ |.-++|....+|.-+ -+|.-++|...++..... --|.|
T Consensus 208 G-~qvwr~~t~GpIf~~Pc~s~---------Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~ 274 (354)
T KOG4649|consen 208 G-RQVWRPATKGPIFMEPCESR---------PSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDL 274 (354)
T ss_pred C-cEEEeecCCCceecccccCC---------CcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceec
Confidence 2 34676666554322111111 111233333343332 356666665444322111 01222
Q ss_pred -cCC---CcEEEEEc-CCcEEEE---------eCCCcEEEEeccCCCCcCCCCeeEEEECC---CCCEEEEEecCCCccc
Q 011970 322 -LYE---NQLFLTFR-NRTVAVW---------NFRGELVTSFEDHLLWHPDCNTNNIYITS---DQDLIISYCKAEPEDQ 384 (474)
Q Consensus 322 -spd---g~llaS~s-D~tIklW---------d~~G~ll~tl~gH~~~~~~~~v~svafSp---Dg~~LaS~s~~~~~~~ 384 (474)
+|. -++|..++ ||.+.|- +-+|-.++.++.-... +.|.-|| ||++|+ ||.
T Consensus 275 h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~------~eIFsSPvii~grl~i-gcR------ 341 (354)
T KOG4649|consen 275 HSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELS------NEIFSSPVIIDGRLLI-GCR------ 341 (354)
T ss_pred cCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecC------cccccCCeEEccEEEE-EEc------
Confidence 122 23444455 9988777 4443344444432221 2344445 687666 665
Q ss_pred cccCCCCeEEEEeCCCC
Q 011970 385 WMEGSAGSINVSSILTG 401 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG 401 (474)
|..++-||+.++
T Consensus 342 -----DdYv~cldl~~~ 353 (354)
T KOG4649|consen 342 -----DDYVRCLDLDTW 353 (354)
T ss_pred -----cCeEEEEecccc
Confidence 999999999775
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.4 Score=55.16 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=92.0
Q ss_pred CCccEEEEecCCCeEEEEEeecCcc-eeEEE----EEecCCCeEEEEeCCCcEEEEECCCC--ceEEeccc----cCCce
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHR-NKKVD----FIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRT----EFMTP 316 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~-v~~V~----F~~~~~~~ll~~~~D~tIkIWDv~tg--~~~~~l~~----h~~~v 316 (474)
....|.-.||++|+++....-|-.. +..++ |..-.++..+.|=.++.+-.||.|-. +++.. .+ .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccCCCc
Confidence 3467888999999999999865332 43333 11112567778888999999999853 23321 22 22345
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEeCCCcE-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 317 SAFIFLYENQLFLTFRNRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 317 ~sv~Fspdg~llaS~sD~tIklWd~~G~l-l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
++++-+-+|.+++.+.+|-|||+|--|.- .+.|.+-..+ |..|..|.||++|+..| +..+-|
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc------------~tyLlL 643 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATC------------KTYLLL 643 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEee------------cceEEE
Confidence 56777888876554449999999965643 4455554444 78999999999999888 578888
Q ss_pred EeC
Q 011970 396 SSI 398 (474)
Q Consensus 396 Wdi 398 (474)
.+.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.54 E-value=5 Score=44.33 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=112.7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEE----------EEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQ----------EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~----------~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
+|.+.+ ++.++.|.=.|++||+.+.+..- ..+. .+++.. +++... ..|+.|.-.|.+||+.+
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~---t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFG---TLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEE---cCCCEEEEEECCCCCEE
Confidence 565544 44566777778889988876541 1121 234443 344443 33677888899999998
Q ss_pred EEEeecC-cceeEEEEEe-cCCCeEEEEe------CCCcEEEEECCCCceEEec---ccc--------------------
Q 011970 264 KVFYHLL-HRNKKVDFIE-QFNEKLLVKQ------ENENLQILDVRNAELMEVS---RTE-------------------- 312 (474)
Q Consensus 264 ~tl~~h~-~~v~~V~F~~-~~~~~ll~~~------~D~tIkIWDv~tg~~~~~l---~~h-------------------- 312 (474)
-.+.... ..-..+.-.| ..+++++++. .++.|.-.|.+||+.+-.. ...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 7765211 1001111000 1256777764 2789999999999977431 111
Q ss_pred --------CCceEE-EEEcCCCcEEEEEc-C-----C-----------cEEEEeCC-CcEEEEec--cCCCCcCCCCeeE
Q 011970 313 --------FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNFR-GELVTSFE--DHLLWHPDCNTNN 363 (474)
Q Consensus 313 --------~~~v~s-v~Fspdg~llaS~s-D-----~-----------tIklWd~~-G~ll~tl~--gH~~~~~~~~v~s 363 (474)
...+|. .++-|+..++--+. + + +|---|.+ ||++-.|. .|..|..|+.-..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 112332 24445444443332 2 2 34445664 88865444 5777776653333
Q ss_pred EEEC--CCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 364 IYIT--SDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 364 vafS--pDg~---~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+-+. .||+ .++-+.+ +|-+-+-|-.|||.+.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEEeccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 3343 5887 7878877 9999999999999973
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.6 Score=41.62 Aligned_cols=189 Identities=13% Similarity=0.154 Sum_probs=117.3
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc----eeeeccccCceEEEEeC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA----LFESESLKWPGFVEFDD 195 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~----lf~~~~~~~~~~V~Fs~ 195 (474)
.+.+..--+......+.|-.+|..+-|.+.||. -.++..++.+|+..+..+ .|.. .++.-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~--------S~l~~~d~~tg~~~~~~~l~~~~FgE-------Git~~- 98 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQ--------SSLRKVDLETGKVLQSVPLPPRYFGE-------GITIL- 98 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTE--------EEEEEEETTTSSEEEEEE-TTT--EE-------EEEEE-
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCc--------EEEEEEECCCCcEEEEEECCccccce-------eEEEE-
Confidence 345555334456778899899998888776661 356677889998743222 3332 24443
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee--c---
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH--L--- 269 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~--h--- 269 (474)
++++..=-=.+++.-+||.++-+.+.+++ ...=|.++ ++|..|..+. + ...|..+|.++-+..+++.- .
T Consensus 99 -~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SD--G-S~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 99 -GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSD--G-SSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp -TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE---S-SSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred -CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEEC--C-ccceEEECCcccceEEEEEEEECCEE
Confidence 44544333467889999999999998886 45667777 5566666652 2 35799999999888887762 1
Q ss_pred CcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEec-----c-------cc---CCceEEEEEcC-CCcEEEEEc
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-----R-------TE---FMTPSAFIFLY-ENQLFLTFR 332 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l-----~-------~h---~~~v~sv~Fsp-dg~llaS~s 332 (474)
.....++.++ ++++.|-- ....|-.-|..+|+....+ . .+ .+-...||+.| .+++++||-
T Consensus 174 v~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 174 VSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2344667776 68888874 3456666799999987642 1 11 34577899965 566677773
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.66 Score=53.20 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=105.0
Q ss_pred EeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC
Q 011970 137 YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (474)
Q Consensus 137 fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~ 216 (474)
|.|-...+|.+| ||.=+...+.|.- .+|++.... +...+..++.+. |.--+||.|=.-|.+-||...
T Consensus 23 WHPsePlfAVA~------fS~er~GSVtIfa-dtGEPqr~V-----t~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 23 WHPSEPLFAVAS------FSPERGGSVTIFA-DTGEPQRDV-----TYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cCCCCceeEEEE------ecCCCCceEEEEe-cCCCCCccc-----ccceehhhhccC-hHHHHHhhccccceeEEEecC
Confidence 344444455444 3444445666643 788873311 112234467887 677789999889999999854
Q ss_pred CCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC-CeEEEEEe---e-----cCcceeEEEEEecCC
Q 011970 217 NYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFY---H-----LLHRNKKVDFIEQFN 283 (474)
Q Consensus 217 tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~---~-----h~~~v~~V~F~~~~~ 283 (474)
+ +..+|.. ...|+-+.||| |+.|++.. .-+.+.+|...- |+. ++.+ | .+++++.+. +++
T Consensus 90 ~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d~~g~~-q~~~~~~hel~~~ltl~cfRL~---~~~ 161 (1416)
T KOG3617|consen 90 T-TETHTVVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYDVIGEI-QTSNIMQHELNDQLTLWCFRLS---YDR 161 (1416)
T ss_pred C-ceeeeeccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEeeecccc-ccchhhhhHhhceeeEEEEecC---CCh
Confidence 4 4556654 45799999997 67777652 235699997642 332 2222 1 122333333 333
Q ss_pred C------eEEEEeCCCcEE-EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEecc
Q 011970 284 E------KLLVKQENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 351 (474)
Q Consensus 284 ~------~ll~~~~D~tIk-IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~g 351 (474)
+ +.++++++.-+- ..+.+-...-+. -.|. =+|+|..|..+. +|||.-=|-.|.+.+..+-
T Consensus 162 Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs-~~ks-------gv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~ 229 (1416)
T KOG3617|consen 162 EEKFKLAKAAVTGDESALDEPFNWKESLAERS-DEKS-------GVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKL 229 (1416)
T ss_pred HHhhhhhhhhccCchhhhcccccCccchhhcc-cccc-------CCCCCcEEEEEcCCceEEEEcCCCcEEEEEEc
Confidence 2 344445444433 333321110000 1111 158888888777 9999887867888775553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.1 Score=46.71 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred cEEEEECCC--Cce--EEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCC------c---EEEEeccCC--CCcCC
Q 011970 294 NLQILDVRN--AEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 358 (474)
Q Consensus 294 tIkIWDv~t--g~~--~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G------~---ll~tl~gH~--~~~~~ 358 (474)
.|.+++-.+ |+. .+++......+..++|.++| ++++..++..++.|.+| + ++..|.... ..+
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-- 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-- 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc--
Confidence 677776443 332 34455555678899999999 77765566555667643 2 233343321 011
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 011970 359 CNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s 377 (474)
..+.++|.|||.+.++-+
T Consensus 125 -~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 -SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -cccCceECCCCCEEEecc
Confidence 147899999999988754
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=39.31 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=62.1
Q ss_pred cEEEEEEcC----C-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 228 HVQEIKISP----G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 228 ~V~~vafSp----g-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
+|.++++.+ | .-|+++ +.|..||+++ ..+++..+... +.+..+.-+. +++++.+-++|||-++|-..
T Consensus 1 ~V~al~~~d~d~dg~~eLlvG---s~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVG---SDDFEIRVFK--GDEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred CeeEEEEEecCCCCcceEEEe---cCCcEEEEEe--CCcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCcc
Confidence 467777774 2 345554 6689999998 44788888743 5566666443 57888899999999988432
Q ss_pred CceEEeccccCCceEEEEEcC-CC---cEEEEEc-CCcEEE
Q 011970 303 AELMEVSRTEFMTPSAFIFLY-EN---QLFLTFR-NRTVAV 338 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fsp-dg---~llaS~s-D~tIkl 338 (474)
++-+.-..| .+.++++.+ +| .-|++|. +|.|.+
T Consensus 73 -RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 -RLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222221222 356665443 32 2466676 877643
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.52 Score=48.68 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCcEEEEEcCCcEEEEeCCCcE---EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEec
Q 011970 315 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 378 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD~tIklWd~~G~l---l~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s~ 378 (474)
.+++++|.|||++|++-..|.|++.+.+|.. +..+..- ..........++|+|+ +.+-++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccc-cccccCCcccceeccccCCCCEEEEEEEc
Confidence 5899999999999998779999999966665 3444210 0001123689999995 787787764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.0088 Score=67.99 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEE-----------cCCCcEEEEEc-CCcEEEEeC--CCc----EEEEec
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNF--RGE----LVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-----------spdg~llaS~s-D~tIklWd~--~G~----ll~tl~ 350 (474)
+-.+++|+|.++.+..- ..+++|..++...+| ||||..||..+ ||.++.|.+ .|+ |+..++
T Consensus 201 ~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred ccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 34788999888665443 556778888776665 89999999998 999999997 475 677888
Q ss_pred cCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 351 DHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpD---------g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
-|... + .|-.+ |..+ =++++++++ ...-+|+|.-..-+|+
T Consensus 280 phd~~-p--~vC~l-c~~~~~~~v~i~~w~~~Itttd----------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 280 PHDKH-P--RVCWL-CHKQEILVVSIGKWVLRITTTD----------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCC-C--ceeee-eccccccCCccceeEEEEeccc----------CCcceeEeeccchhhh
Confidence 77742 1 12222 2222 134555554 2456899987777777
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.8 Score=42.16 Aligned_cols=164 Identities=12% Similarity=0.169 Sum_probs=95.1
Q ss_pred EEEeCCCCeE-EEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceE-EEEecCCCCcc-EEEEecCCCeEEEEE
Q 011970 191 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIML-LIFNRSSSHVP-LKILSIEDGTVLKVF 266 (474)
Q Consensus 191 V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~l-a~~s~~s~D~t-IkLWdi~tG~~L~tl 266 (474)
-+|...||++ .|..+.+ |+++..+. ...-..|+|+|-... +.+.. .=+| ..++|..+++.+.++
T Consensus 40 saf~~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~ 107 (366)
T COG3490 40 SAFDARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTL 107 (366)
T ss_pred eeeeccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEE
Confidence 4677788876 4444444 45544332 222334566652221 12211 1122 557777777777766
Q ss_pred eec------CcceeEEEEEecCCCeEEEEeCC-----CcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEcCC
Q 011970 267 YHL------LHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (474)
Q Consensus 267 ~~h------~~~v~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~sD~ 334 (474)
... .|.+ |+ |+|..|-++-.| |.|-|||.+.+- .+-.+.+|...+-.+.+.+||++++-+. |
T Consensus 108 ~s~~~RHfyGHGv----fs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-G 181 (366)
T COG3490 108 VSQEGRHFYGHGV----FS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-G 181 (366)
T ss_pred ecccCceeecccc----cC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-C
Confidence 421 1222 44 667777776433 788999998543 2334678888899999999999998764 3
Q ss_pred cEE--------------------EEe-CCCcEEEEeccCCCC--cCCCCeeEEEECCCCCEEEE
Q 011970 335 TVA--------------------VWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 335 tIk--------------------lWd-~~G~ll~tl~gH~~~--~~~~~v~svafSpDg~~LaS 375 (474)
-|+ +-| .+|+++. .|... .....|+-+++-+||...+-
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~atG~lie---kh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE---KHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccccchhh---hccCchhhhhcceeeeeeCCCCcEEEE
Confidence 333 344 2466543 33332 11123688999999988774
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2 Score=44.08 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=103.6
Q ss_pred ecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEe
Q 011970 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 204 (474)
Q Consensus 125 ~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~ 204 (474)
.|-+.+ |-++.|||+-++|.++- +. ...-+|=-.+|++..+.||-. +.-+..+++. -+|++.++-
T Consensus 82 ~g~~~n-vS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~d 146 (316)
T COG3204 82 LGETAN-VSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVD 146 (316)
T ss_pred cccccc-ccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEe
Confidence 443444 99999999999998854 22 233355558999988877655 3446678887 689999998
Q ss_pred cCCCcEEEeecCCCeEEEE-------Ec-----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec--
Q 011970 205 AQDSIYKVFDLKNYTMLYS-------IS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-- 269 (474)
Q Consensus 205 s~D~tiKlWdl~tg~~l~t-------l~-----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-- 269 (474)
-.|+++-+..+...+.... |. ...-..+|+.| +.+|..+ .+-.|++|..++.+. ..+..|
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~~I~~~~~~~--~~l~~~~~ 221 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPIGIFEVTQSP--SSLSVHAS 221 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE---EccCCcEEEEEecCC--cccccccc
Confidence 8999999998876543221 21 12467899998 6676665 335788888775333 122211
Q ss_pred ----------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 270 ----------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 270 ----------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..-+.++.|.++.|..|+-+.|++-+.--|.. |+.+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~ 267 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVI 267 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCee
Confidence 12345566665544444447788888877743 4433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.66 Score=52.75 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=100.0
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.+.+.+++ +..++-+ ..++-|.+.+. .|+. ++.-.|... .-.|+++++++.||+|.|--+-+.+...
T Consensus 41 ~is~~av~-~~~~~~G---tH~g~v~~~~~-~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALG---THRGAVYLTTC-QGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHhh-cceeeec---cccceEEEEec-CCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44555555 3444443 33567777774 5565 443333322 2458999999999999999998887665
Q ss_pred eccccCCceEEEEEcCC-----CcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 308 VSRTEFMTPSAFIFLYE-----NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspd-----g~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+..=+ ..+.+|+++|| .+.+++|+ -| +-+..-+ |+.... ..|..- ..|.+|++ .|.+||=++
T Consensus 108 ~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~e---G~I~~i~W--~g~lIAWan-- 177 (846)
T KOG2066|consen 108 QYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGE---GPIHSIKW--RGNLIAWAN-- 177 (846)
T ss_pred eEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCc---cceEEEEe--cCcEEEEec--
Confidence 43322 47889999998 66788888 55 6677654 554333 223221 12677877 799999875
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|--||+.|+.+++-+.-++.-.
T Consensus 178 ----------d~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 178 ----------DDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred ----------CCCcEEEeccccceeeccCCCC
Confidence 4558999999999988776543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.53 Score=54.25 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=84.5
Q ss_pred eCCCcEEEEECCCCceEEeccccCCc-eEEEEEc------CCCcEEEEEcCCcEEEEeCC--CcEEEEeccCCCCcCCCC
Q 011970 290 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFL------YENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 290 ~~D~tIkIWDv~tg~~~~~l~~h~~~-v~sv~Fs------pdg~llaS~sD~tIklWd~~--G~ll~tl~gH~~~~~~~~ 360 (474)
.....|.--|+.+|+.++....|.+. |..++=. ...+.|+.-+++.+-.||.+ |..+..-+.|.- ....+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCC
Confidence 46688888999999999987777655 4444321 13466777778888899985 643332233432 23334
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE-EecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
..+++-+.+|.+.+ ||. +|-|||+| ..|+--+ .|.|-.
T Consensus 580 Fs~~aTt~~G~iav-gs~-----------~G~IRLyd-~~g~~AKT~lp~lG---------------------------- 618 (794)
T PF08553_consen 580 FSCFATTEDGYIAV-GSN-----------KGDIRLYD-RLGKRAKTALPGLG---------------------------- 618 (794)
T ss_pred ceEEEecCCceEEE-EeC-----------CCcEEeec-ccchhhhhcCCCCC----------------------------
Confidence 67788888888655 554 99999999 4553222 222222
Q ss_pred cccccccCEEEEEEcCCCCEEEEEc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
++|..|.-+.||++|+...
T Consensus 619 ------~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 ------DPIIGIDVTADGKWILATC 637 (794)
T ss_pred ------CCeeEEEecCCCcEEEEee
Confidence 1899999999999966443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.068 Score=56.33 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=74.0
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
++..+-.+=+.++-+.+|..-|+.++|+|...+.+..++-+.+|+|-|+++..+......| ..+|+++|--|..-++-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5555555545555566677788999998544456777899999999999999999888777 689999998655655555
Q ss_pred c--CCcEEEEeCC--CcEEEEecc
Q 011970 332 R--NRTVAVWNFR--GELVTSFED 351 (474)
Q Consensus 332 s--D~tIklWd~~--G~ll~tl~g 351 (474)
+ +|.|-|+|++ -..+..|.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhh
Confidence 5 9999999984 334444444
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.7 Score=47.17 Aligned_cols=54 Identities=6% Similarity=0.149 Sum_probs=39.3
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc-------CCcEEEEEEcCCc
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-------DKHVQEIKISPGI 238 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~-------~~~V~~vafSpg~ 238 (474)
.+..|+.++|. |||.+|++--..|.|++++..++. .+..+. ......|+|+|+-
T Consensus 28 GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 37788899997 799999876556999999876553 222222 2457899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=3 Score=46.84 Aligned_cols=179 Identities=6% Similarity=0.015 Sum_probs=101.3
Q ss_pred cCceEEEEeCCCCeEEEEec------CCCcEEEeecC-CCeEEEEEcCCcEEEEEEcCC-ceEEEEecC---------CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSA------QDSIYKVFDLK-NYTMLYSISDKHVQEIKISPG-IMLLIFNRS---------SS 248 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s------~D~tiKlWdl~-tg~~l~tl~~~~V~~vafSpg-~~la~~s~~---------s~ 248 (474)
..+...++| |||+.+|+-. .|+.-.||=.. .+....-..+.....-.|||+ ..+++.... ..
T Consensus 350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 456678998 7999998876 35555566432 333322233445777888885 656555321 11
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE---EECCCCceEEe-----cc-ccCCceEEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI---LDVRNAELMEV-----SR-TEFMTPSAF 319 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI---WDv~tg~~~~~-----l~-~h~~~v~sv 319 (474)
...+.+.++..|+.-+.+ ...+.++.++ |||.+++.-. ++.|.+ =.-..|+ .+. +. +-...+.++
T Consensus 429 ~gql~~~~vd~ge~~~~~---~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 429 TGQLARTPVDASAVASRV---PGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CceEEEEeccCchhhhcc---CCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 223433466555554322 3568899987 7888888755 356655 4444565 221 22 222346789
Q ss_pred EEcCCCcEEEEEcCCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 320 IFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 320 ~Fspdg~llaS~sD~tIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.|.+++.+++...+....+|.+ +|..-..+.+.. .+. .+.+|+=+|+ .+.+.
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n-~~~--~v~~vaa~~~-~iyv~ 556 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN-LSA--PVVAVAASPS-TVYVT 556 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCccccccCCCC-ccC--ceEEEecCCc-eEEEE
Confidence 9999999876554444456765 576544333321 111 2556766653 44443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.17 E-value=7.2 Score=45.08 Aligned_cols=198 Identities=10% Similarity=0.035 Sum_probs=113.7
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcC--Cc-EEEEEEcCC-ceEEEEecCCCCc--cEEEEecCCC----
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KH-VQEIKISPG-IMLLIFNRSSSHV--PLKILSIEDG---- 260 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~--~~-V~~vafSpg-~~la~~s~~s~D~--tIkLWdi~tG---- 260 (474)
.|+ ++|..+|-|+.||.| |=+..+- .++.+.. .. |+-+-.-.+ ..|++-+.+..-+ .||+||++.-
T Consensus 30 c~~-s~~~~vvigt~~G~V--~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCS-SSTGSVVIGTADGRV--VILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEc-CCCceEEEeeccccE--EEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 566 688899999998855 5554544 3355542 23 444444443 3555443322112 5999998742
Q ss_pred --eEEEEEe--ec-----CcceeEEEEEecCCCeEEEEeCCCcEEEE--ECCC--CceEEeccccCCceEEEEEcCCCcE
Q 011970 261 --TVLKVFY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQIL--DVRN--AELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 261 --~~L~tl~--~h-----~~~v~~V~F~~~~~~~ll~~~~D~tIkIW--Dv~t--g~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
+|+.+.. .| ..++..++.+ .+-..+++|=.||.|-++ |+.. |.-.........+|+.++|..|++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 3552222 21 2234555554 334455556688888877 3222 1112222334468999999999988
Q ss_pred EEEEc-CCcEEEEeCCCcE--EEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 328 FLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 328 laS~s-D~tIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++=.. -..|.++.++|+- +.++..|... ++...|++--. +|+.+ +.-+-++|...-+.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~-------------~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAG-------------SEFLYFYDSDGRGP 247 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEec-------------CceEEEEcCCCcce
Confidence 32222 6679999998665 6667777654 67777876544 45443 45677777643333
Q ss_pred EEEec-CCC
Q 011970 404 LAKIN-ATN 411 (474)
Q Consensus 404 l~tl~-gH~ 411 (474)
--++. ||.
T Consensus 248 cfaf~~g~k 256 (933)
T KOG2114|consen 248 CFAFEVGEK 256 (933)
T ss_pred eeeecCCCe
Confidence 33454 555
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.38 Score=53.90 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCcEEEEEc-CCcEEEEeCCC-cE-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 315 TPSAFIFLYENQLFLTFR-NRTVAVWNFRG-EL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~tIklWd~~G-~l-l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+.--++.-.+++++-|+ -|.+-|++-.| +. +...++-... +-.+.+|++..++|.|+. .|
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~-----~~~~~vs~~e~lvAagt~-----------~g 98 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGI-----TCVRSVSSVEYLVAAGTA-----------SG 98 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccce-----EEEEEecchhHhhhhhcC-----------Cc
Confidence 344445677788888887 89999999864 43 3344442222 457888999999998875 67
Q ss_pred eEEEEeCCCCeE---EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 392 SINVSSILTGKC---LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 392 tIklWdi~tG~c---l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.|-+.-++.++- +..=.+|.. +-..|+++.||+||..+|+|..-|+
T Consensus 99 ~V~v~ql~~~~p~~~~~~t~~d~~-------------------------------~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDYVTPCDKS-------------------------------HKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred eEEeehhhccCCCcceeecccccc-------------------------------CCceEEEEEecccccEEeecCCCce
Confidence 777776644221 111111111 1128999999999999999999999
Q ss_pred EEE
Q 011970 469 VHV 471 (474)
Q Consensus 469 Vkl 471 (474)
|.+
T Consensus 148 v~~ 150 (726)
T KOG3621|consen 148 VVL 150 (726)
T ss_pred EEE
Confidence 875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.12 Score=58.93 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=74.6
Q ss_pred EcCCCcEEEEE--c---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 321 FLYENQLFLTF--R---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 321 Fspdg~llaS~--s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
|.|--.+||.+ | -|.|.|+--+||.-+..+- ++ -+.+++++|.--.||+|=. -|-+-+
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~---P~---hatSLCWHpe~~vLa~gwe-----------~g~~~v 85 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY---PV---HATSLCWHPEEFVLAQGWE-----------MGVSDV 85 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCCccccc---ce---ehhhhccChHHHHHhhccc-----------cceeEE
Confidence 45555555433 2 5688888767886442221 11 1467999999999998754 788999
Q ss_pred EeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 396 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|+..+-+--..-..|.. +|.-|.|||||..|.|+..=|.|++|.
T Consensus 86 ~~~~~~e~htv~~th~a----------------------------------~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPA----------------------------------PIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred EecCCceeeeeccCCCC----------------------------------CceeEEecCCCCeEEEcCCCceeEEEE
Confidence 99766555444455664 889999999999999999999999996
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.32 Score=56.82 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=49.3
Q ss_pred EEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 328 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 328 laS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
++-++ -|.|-+-|.+|++-. | |.+-.....|.+++|+-||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~-~--~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP-L--HQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch-h--hcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 34444 455656666555321 0 111111123799999999999998765 99999999999999999
Q ss_pred ecCCCC
Q 011970 407 INATNC 412 (474)
Q Consensus 407 l~gH~~ 412 (474)
|..|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988874
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.1 Score=43.37 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred cEEEEecC--CCeEE--EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-C----c---eEEeccc----cCC
Q 011970 251 PLKILSIE--DGTVL--KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-A----E---LMEVSRT----EFM 314 (474)
Q Consensus 251 tIkLWdi~--tG~~L--~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g----~---~~~~l~~----h~~ 314 (474)
.|.+++-. +|+.. ..|.........++|.+ ++ +.+++.+.-.++.|... + + ++..+.. +..
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~--~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~ 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAV--GG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEec--CC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence 45555433 35432 34544345557788763 44 77776666555656532 1 2 2222322 234
Q ss_pred ceEEEEEcCCCcEEEEEcC--------------------CcEEEEeCCCcEEEEe-ccCCCCcCCCCeeEEEECCCCCEE
Q 011970 315 TPSAFIFLYENQLFLTFRN--------------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD--------------------~tIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDg~~L 373 (474)
.+..++|.|||.+.++-++ +.|--.|.+|..+..+ .|+.. .+.++|+|+|+++
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~l~ 198 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGDVF 198 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCCEE
Confidence 5788999999999886542 2233344444433333 23332 4789999999998
Q ss_pred EEEe
Q 011970 374 ISYC 377 (474)
Q Consensus 374 aS~s 377 (474)
++-.
T Consensus 199 ~tdn 202 (367)
T TIGR02604 199 FCDN 202 (367)
T ss_pred EEcc
Confidence 8743
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.32 Score=56.80 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=65.7
Q ss_pred CeEEEEeCCCcEEEEECCCCceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 284 EKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
.-++++...|.+-+-|+.+.-+- ..-..-+.+|.+++|+.||.+++.|= +|-|++||.+ ++.++.+..|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 44666666777776665443221 11122346899999999999999986 9999999995 8999999988876532
Q ss_pred eeEEEECCCCCEEEEEec
Q 011970 361 TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~ 378 (474)
|--+-.+.++..+.++..
T Consensus 178 vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEEEeCCCcEEEEccC
Confidence 445555667777777643
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.36 E-value=4.7 Score=39.83 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=24.5
Q ss_pred EEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEEE
Q 011970 191 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSI 224 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~tl 224 (474)
++.. ||.++.|.+. .+.|++|||.+|+.+.+-
T Consensus 51 L~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~ 84 (262)
T COG3823 51 LEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSE 84 (262)
T ss_pred eeee--CCEEEEeccccccceeEEEeccCceEEEEe
Confidence 5664 7888888775 557999999999876543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.34 E-value=20 Score=41.70 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=115.2
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEeecCc--------ceeEEEEEec---------------CCCeEEEEeCCC
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--------RNKKVDFIEQ---------------FNEKLLVKQENE 293 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~--------~v~~V~F~~~---------------~~~~ll~~~~D~ 293 (474)
|+++..++ .++.|.=.|.+||+.+-.+.-... ..+.|++.+. .+++++.+..|+
T Consensus 194 gg~lYv~t---~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCT---PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEEC---CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 55555542 256777888899999887763211 1244555321 245888888999
Q ss_pred cEEEEECCCCceEEeccccCCce-------------EEEEEc---CCCcEEEEEc----------CCcEEEEeC-CCcEE
Q 011970 294 NLQILDVRNAELMEVSRTEFMTP-------------SAFIFL---YENQLFLTFR----------NRTVAVWNF-RGELV 346 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~~~v-------------~sv~Fs---pdg~llaS~s----------D~tIklWd~-~G~ll 346 (474)
.+--.|.+||+.+..+..+. .+ ..+.-+ .++.+++.++ +|.|+-.|. +|+++
T Consensus 271 ~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999875432210 00 011111 2566666543 478999999 59998
Q ss_pred EEecc-CC----------CCcCC-CCe-eEEEECCCCCEEEEEecCCCcccc-------ccCCCCeEEEEeCCCCeEEEE
Q 011970 347 TSFED-HL----------LWHPD-CNT-NNIYITSDQDLIISYCKAEPEDQW-------MEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 347 ~tl~g-H~----------~~~~~-~~v-~svafSpDg~~LaS~s~~~~~~~~-------~~s~DgtIklWdi~tG~cl~t 406 (474)
-.+.- +. .|..+ .++ ...++.|+-.++.-+.....-|.+ ...-.++|-=-|+.|||....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 76641 00 00000 011 124455554444432211111110 112246777889999999988
Q ss_pred ecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCC---EEEEEcCCCcEEEcc
Q 011970 407 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERN---EIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~---~LaSgs~DgtVklWd 473 (474)
++. |. +.|++....+ .+ =+.+.- ||+ .|+.++.+|.+.+-|
T Consensus 430 ~Q~~~h---------------------D~WD~D~~~~----p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 430 FQTVHH---------------------DLWDMDVPAQ----PS-LVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred ecccCC---------------------ccccccccCC----ce-EEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 876 33 2455433322 22 122322 664 788899998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=93.27 E-value=3 Score=45.38 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCC-------CEEE
Q 011970 306 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLII 374 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg-------~~La 374 (474)
++++......+++++|.|||++|++-. .|.|++++-. +. .+..+.+-..-........|+|+||= .+-+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 344555667899999999999999998 6999999864 32 23223210000000125789999984 3556
Q ss_pred EEec
Q 011970 375 SYCK 378 (474)
Q Consensus 375 S~s~ 378 (474)
+++.
T Consensus 102 syt~ 105 (454)
T TIGR03606 102 SYTY 105 (454)
T ss_pred EEec
Confidence 6654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=5.6 Score=45.93 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=83.0
Q ss_pred CccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCC--eEEEEeCCC-----cEEEEECCCC------ceE---Eecc-
Q 011970 249 HVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNE--KLLVKQENE-----NLQILDVRNA------ELM---EVSR- 310 (474)
Q Consensus 249 D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~--~ll~~~~D~-----tIkIWDv~tg------~~~---~~l~- 310 (474)
|+.|-+.+ .+ +.++.|..+.+. -|+|.-..++ .|++-++|+ .|||||+..- +|+ +...
T Consensus 44 ~G~V~~Ln--~s~~~~~~fqa~~~s--iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~ 119 (933)
T KOG2114|consen 44 DGRVVILN--SSFQLIRGFQAYEQS--IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTI 119 (933)
T ss_pred cccEEEec--ccceeeehheecchh--hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeecc
Confidence 44444444 33 334667655444 2444323344 444446654 5899998743 455 2221
Q ss_pred ---ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC---C--CcEEEEeccCCCCcCCCCeeEEEECCCCCE--EEEEecC
Q 011970 311 ---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---R--GELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKA 379 (474)
Q Consensus 311 ---~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~---~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~--LaS~s~~ 379 (474)
.....++.++.|-+=+.+|.|= ||+|-...- + |. +.---|.+.- .|.+++|-.||+. .|+.
T Consensus 120 ~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~~~~~---pITgL~~~~d~~s~lFv~T--- 191 (933)
T KOG2114|consen 120 KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSHRGKE---PITGLALRSDGKSVLFVAT--- 191 (933)
T ss_pred CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--ceeeeccCCC---CceeeEEecCCceeEEEEe---
Confidence 2345667788898999999987 999977652 1 22 1222233332 3789999999987 3322
Q ss_pred CCccccccCCCCeEEEEeCCCCeE--EEEecCCC
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKC--LAKINATN 411 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~ 411 (474)
-..|+++.+. |+- +.++..|.
T Consensus 192 ----------t~~V~~y~l~-gr~p~~~~ld~~G 214 (933)
T KOG2114|consen 192 ----------TEQVMLYSLS-GRTPSLKVLDNNG 214 (933)
T ss_pred ----------cceeEEEEec-CCCcceeeeccCC
Confidence 4679999974 776 55555554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=8.7 Score=41.09 Aligned_cols=144 Identities=12% Similarity=0.085 Sum_probs=82.6
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEE--EEeccCCCCcC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELV--TSFEDHLLWHP 357 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll--~tl~gH~~~~~ 357 (474)
+++..++++....-++-||--...-..........+.++.|.+||.+++.+.+|.+ +|.. .|+.- .+|..-.....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 44444444544444455552211112222333456889999999999999888876 5555 36421 12321110000
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
...+.+++|.+|++.+++|- .|.|.... .-|+--...+.-+.
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~------------~G~v~~s~-D~G~tW~~~~~~~~------------------------- 368 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGG------------SGILLRST-DGGKSWKRDKGADN------------------------- 368 (398)
T ss_pred CcceEEEEEcCCCcEEEEEC------------CCcEEEeC-CCCcceeEccccCC-------------------------
Confidence 01267899999999999863 68776664 45665444332111
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
.-...+++.|.++++-.++|. +|.|-
T Consensus 369 ------~~~~ly~v~f~~~~~g~~~G~-~G~il 394 (398)
T PLN00033 369 ------IAANLYSVKFFDDKKGFVLGN-DGVLL 394 (398)
T ss_pred ------CCcceeEEEEcCCCceEEEeC-CcEEE
Confidence 012688999998887777664 66653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=9.2 Score=40.91 Aligned_cols=139 Identities=10% Similarity=0.040 Sum_probs=84.6
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEE---EEE-cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE----
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV---- 262 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l---~tl-~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~---- 262 (474)
+..+ +||++++.+..-..++-|| .|... ... ....+.++.|.+++.++.... .+. -+|...+|+.
T Consensus 244 v~~~-~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~---~G~-l~~S~d~G~~~~~~ 316 (398)
T PLN00033 244 VNRS-PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR---GGG-LYVSKGTGLTEEDF 316 (398)
T ss_pred EEEc-CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC---Cce-EEEecCCCCccccc
Confidence 3444 6788888776665566666 33321 222 245789999997554444432 233 3666667752
Q ss_pred -EEEEeec--CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---ccCCceEEEEEcCCCcEEEEEcCCcE
Q 011970 263 -LKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 336 (474)
Q Consensus 263 -L~tl~~h--~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---~h~~~v~sv~Fspdg~llaS~sD~tI 336 (474)
+...... ...+..|.|. +++.+++.+.+|.+.... ..|+.-+... .-....+++.|.++++.++++.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 2222211 1236778875 357788888888887775 4555433222 22345789999999999999988877
Q ss_pred EEE
Q 011970 337 AVW 339 (474)
Q Consensus 337 klW 339 (474)
--|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.13 E-value=20 Score=36.85 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCcEEEEEc-C------CcEEEEeCCCcEEEEec---cC-------CCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 315 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D------~tIklWd~~G~ll~tl~---gH-------~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.+.++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..|-...+++++|||+.|....
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 556888999999999987 8 77877777798877662 21 3334455678999999999777665
Q ss_pred c
Q 011970 378 K 378 (474)
Q Consensus 378 ~ 378 (474)
.
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 5
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.65 Score=45.94 Aligned_cols=104 Identities=7% Similarity=0.032 Sum_probs=60.8
Q ss_pred CCeEEEEeCCCcEEEEECCC-CceEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 283 NEKLLVKQENENLQILDVRN-AELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~t-g~~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+.+++++..|+.|.+|+..- |...... .+..+...-|.-..++.+..++. |+.|+.|+.. ++-+-.--.|..- +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 46788899999999998651 2221111 11222222233345666777777 9999999996 7666555555521 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+.....+.-++.|+++- -|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a~---------~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIAD---------TSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEeec---------cccchhhhhcchh
Confidence 23344444555566541 1337778888764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.93 E-value=18 Score=35.91 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=94.8
Q ss_pred cceeeEeecCCC---ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEe
Q 011970 118 NRRICFLNVSPD---EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (474)
Q Consensus 118 g~~l~~l~g~~~---~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs 194 (474)
+....-+.|... ..+.+.+.||||+.+|.+. ..++ ...|+-...|.... .+.+...+. .-+|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~--~~~~-------~~~L~~~~~~~~~~--~~~~g~~l~---~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVS--EGDG-------GRSLYVGPAGGPVR--PVLTGGSLT---RPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEE--EcCC-------CCEEEEEcCCCcce--eeccCCccc---ccccc
Confidence 444444444322 2589999999999998876 2222 22333333333211 122222233 45787
Q ss_pred CCCCeEEEEecCCCcEEEee-cCCCeEE-EEEc--C-C-cEEEEEEcC-CceEEEEecCCCCccEEEEecC---CC--eE
Q 011970 195 DVNGKVLTYSAQDSIYKVFD-LKNYTML-YSIS--D-K-HVQEIKISP-GIMLLIFNRSSSHVPLKILSIE---DG--TV 262 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWd-l~tg~~l-~tl~--~-~-~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~---tG--~~ 262 (474)
++|.+.+....+...+++. ..+|+.. ..+. . . .|.++++|| |.++|.......+..|.+=-|. +| ..
T Consensus 75 -~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 75 -PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred -CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 7899998888888888884 4455532 2222 1 2 799999997 6666666544444555554333 44 11
Q ss_pred E----EEEeecCcceeEEEEEecCCCeEEEE--eCCCcEEE-EECCCCc
Q 011970 263 L----KVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQI-LDVRNAE 304 (474)
Q Consensus 263 L----~tl~~h~~~v~~V~F~~~~~~~ll~~--~~D~tIkI-WDv~tg~ 304 (474)
| .........+..++|.. +..|++. ..++.+.. ..+..+.
T Consensus 154 l~~~~~~~~~~~~~v~~v~W~~--~~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 154 LTGPRRVAPPLLSDVTDVAWSD--DSTLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred eccceEecccccCcceeeeecC--CCEEEEEeCCCCCceeEEEEccCCc
Confidence 1 11112345778999974 4556653 35555555 5544433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=90.71 E-value=26 Score=37.42 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=85.3
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccc------cCCceEEEEEc---C--CC---cEEEEEc-
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT------EFMTPSAFIFL---Y--EN---QLFLTFR- 332 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~------h~~~v~sv~Fs---p--dg---~llaS~s- 332 (474)
.+.|..++.+ +=+.++++.+||++-|.|+|....+.. ... ....|.++-|+ + |+ -+|+.|.
T Consensus 86 ~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 5677888865 358899999999999999998877643 222 33467777775 2 33 5677776
Q ss_pred CCcEEEEeC--C--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC-------CCccc--cccCCCCeEEEEeCC
Q 011970 333 NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA-------EPEDQ--WMEGSAGSINVSSIL 399 (474)
Q Consensus 333 D~tIklWd~--~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~-------~~~~~--~~~s~DgtIklWdi~ 399 (474)
.|++.++.+ + |.....+.+...-..+..+.-..|..+...-+.+... +...+ .....+..||+....
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 888888875 2 4444444433211111122333353331111111000 00000 111126789999999
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE-----cCCCCEEEEEcCCCcEEEcc
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-----DEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-----SpDg~~LaSgs~DgtVklWd 473 (474)
++++.++...... ...++.| ...+..|+.=..||.|++..
T Consensus 244 ~~k~~~K~~~~~~----------------------------------~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 244 KSKGAHKSFDDPF----------------------------------LCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp ---EEEEE-SS-E----------------------------------EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CCcccceeecccc----------------------------------ccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 9998877652211 2233344 34667788888888888764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.27 E-value=24 Score=36.36 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCcEEEEEcCC-cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 313 FMTPSAFIFLYENQLFLTFRNR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~-tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
...+..+..++||+++|.++.| ...-||--...-+...--... .+.++.|+|||.+.+.+ . .|
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~----riq~~gf~~~~~lw~~~-~-----------Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR----RIQSMGFSPDGNLWMLA-R-----------GG 207 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-----EEEEEE-TTS-EEEEE-T-----------TT
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc----eehhceecCCCCEEEEe-C-----------Cc
Confidence 3567788889999999998844 556787522211111111111 37999999999997754 3 78
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
-|+.-+. ..-..++..+.. |- .... -.+..|+|.|+++..|+|+....
T Consensus 208 ~~~~s~~--~~~~~~w~~~~~-~~-----~~~~---------------------~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 208 QIQFSDD--PDDGETWSEPII-PI-----KTNG---------------------YGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp EEEEEE---TTEEEEE---B--TT-----SS-----------------------S-EEEEEESSSS-EEEEESTT-E
T ss_pred EEEEccC--CCCccccccccC-Cc-----ccCc---------------------eeeEEEEecCCCCEEEEeCCccE
Confidence 8888871 223334433321 00 0000 15889999999988887775433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.4 Score=45.51 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=86.8
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC--------cEEEEEcCCcEEEEeCC--Cc-EEEEeccCCCCcC
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--------QLFLTFRNRTVAVWNFR--GE-LVTSFEDHLLWHP 357 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg--------~llaS~sD~tIklWd~~--G~-ll~tl~gH~~~~~ 357 (474)
+..-..|+=.|++.|+.++...-|.+ |.-+.|.||+ +.|+--+|..|--||.+ |. .+.--++|+-. .
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~-~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS-T 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc-c
Confidence 34556677789999999988777766 6666677664 34665678889999984 66 45555566542 2
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCcccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
..+-++.+-+.+|.+.+ ||. +|.|||+|- .|+--+|. .|-.
T Consensus 430 k~nFsc~aTT~sG~Ivv-gS~-----------~GdIRLYdr-i~~~AKTAlPgLG------------------------- 471 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVV-GSL-----------KGDIRLYDR-IGRRAKTALPGLG------------------------- 471 (644)
T ss_pred ccccceeeecCCceEEE-eec-----------CCcEEeehh-hhhhhhhcccccC-------------------------
Confidence 33456777788886555 554 999999995 66544332 2222
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
+.|.-|.-+.||+.|+...
T Consensus 472 ---------~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 472 ---------DAIKHVDVTADGKWILATC 490 (644)
T ss_pred ---------CceeeEEeeccCcEEEEec
Confidence 1788899999999876543
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.81 E-value=22 Score=38.75 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCeEEEEe---cCCCcEEEeecCCCeEEEEEcCCcEEE--EEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-
Q 011970 197 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKHVQE--IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL- 270 (474)
Q Consensus 197 nGk~LaS~---s~D~tiKlWdl~tg~~l~tl~~~~V~~--vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~- 270 (474)
+|=++++. ......-+-| .+|.....+....... +.+-|++.|++.+. ..++..|+ .|+++....--.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~----~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG----NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB----TEEEEE-T-T--EEEEEE--TT
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC----CceEEEcC-CCCEEEeeecCCc
Confidence 45455555 2334444555 3556555554322222 55567676766643 57888887 688876654111
Q ss_pred ----cceeEEEEEecCCCeEEEEeC-------------CCcEEEEECCCCceEEe--ccccC------------------
Q 011970 271 ----HRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNAELMEV--SRTEF------------------ 313 (474)
Q Consensus 271 ----~~v~~V~F~~~~~~~ll~~~~-------------D~tIkIWDv~tg~~~~~--l~~h~------------------ 313 (474)
|| .+.+. |.|..|+.+.+ ...|-..| .+|+.+.. +..|.
T Consensus 188 ~~~~HH--D~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 188 YYDFHH--DIDEL-PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp EE-B-S---EEE--TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccc--ccEEC-CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 22 22332 33444443441 23355666 77776543 22222
Q ss_pred -------CceEEEEEcC-CCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcC
Q 011970 314 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 357 (474)
Q Consensus 314 -------~~v~sv~Fsp-dg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~ 357 (474)
..+.++.+.+ ++.+++|++ -.+|-..|. +|+++-.+-.|..|-.
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~ 317 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNG 317 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--T
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCc
Confidence 3567888887 899999998 557777886 5999999999988753
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.1 Score=49.79 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
|++.-+.++|-=++||.+.. +|-|-|--+. -+-+.++.-|..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~-----------~gelli~R~n-~qRlwtip~p~~-------------------------- 62 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE-----------KGELLIHRLN-WQRLWTIPIPGE-------------------------- 62 (665)
T ss_pred cceEEEEEcCccchhheecc-----------CCcEEEEEec-cceeEeccCCCC--------------------------
Confidence 34667888898899998765 7766665543 555666654542
Q ss_pred ccccccccCEE-EEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 439 STVGEALEDIT-SLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~-slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+ +++|.|||+.||-|=.||+|+|=|
T Consensus 63 --------~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 63 --------NVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred --------ccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 455 999999999999999999999866
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.64 E-value=1.6 Score=49.13 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=86.3
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+.+-..+...+++|+-|+..|.+.|+++.+|+.+..=|++....+-....|++..+.|.+ ++. ..|-+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag----t~~------g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG----TAS------GRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh----cCC------ceEEee
Confidence 4556666777799999999999999999999887765554455777788889988876653 344 456566
Q ss_pred EeccCCCCCccceeeec---cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC
Q 011970 167 YIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t 217 (474)
-+..+++ ..+..++.. |-..|.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 104 ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 6655443 222345543 23456678998 8999999999989887766654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.1 Score=33.52 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 346 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll 346 (474)
..|..+.|+|...++|.++ ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3588899999999999999 99999999887754
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.91 Score=49.71 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.5
Q ss_pred eeEEEECC----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 361 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 361 v~svafSp----Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 46677777 8899999887 999999999999998887444
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.27 E-value=3.9 Score=39.97 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=54.9
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-------cc-------ccCCceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-------l~-------~h~~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
+.|.+..+..|++=..+|.+.+||+.+++++-. +. .....|..+.++.+|.-+++.+||..-.||.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 344445678888889999999999999987532 22 3556788888899999999999888899998
Q ss_pred CCcEE
Q 011970 342 RGELV 346 (474)
Q Consensus 342 ~G~ll 346 (474)
+=.|-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 74443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=14 Score=38.26 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=78.3
Q ss_pred cceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCc-EEEEeCC-CcE
Q 011970 271 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT-VAVWNFR-GEL 345 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~t-IklWd~~-G~l 345 (474)
..++.-+|...++..-++. +++|.|.-= ..---++|. ++|+|--.+.+.+. -|| .-+.|.+ ++.
T Consensus 35 qavfasaf~~~dgs~g~a~~~eaGk~v~~------~~lpaR~Hg-----i~~~p~~~ravafARrPGtf~~vfD~~~~~~ 103 (366)
T COG3490 35 QAVFASAFDARDGSFGAATLSEAGKIVFA------TALPARGHG-----IAFHPALPRAVAFARRPGTFAMVFDPNGAQE 103 (366)
T ss_pred cchheeeeeccCCceeEEEEccCCceeee------eecccccCC-----eecCCCCcceEEEEecCCceEEEECCCCCcC
Confidence 3455556666666665554 455443210 000013454 45565555544442 333 3478875 555
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
.+++....+.|.- --=.|||||.+|-. ... |. ..+-|.|-|+|...+ +-+..+.+|.-
T Consensus 104 pv~~~s~~~RHfy---GHGvfs~dG~~LYA-TEn---df--d~~rGViGvYd~r~~fqrvgE~~t~Gi------------ 162 (366)
T COG3490 104 PVTLVSQEGRHFY---GHGVFSPDGRLLYA-TEN---DF--DPNRGVIGVYDAREGFQRVGEFSTHGI------------ 162 (366)
T ss_pred cEEEecccCceee---cccccCCCCcEEEe-ecC---CC--CCCCceEEEEecccccceecccccCCc------------
Confidence 5544433332210 01238999999974 332 22 223689999998654 45666777763
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.-..|.+.+||++|+-++.
T Consensus 163 ----------------------GpHev~lm~DGrtlvvanG 181 (366)
T COG3490 163 ----------------------GPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ----------------------CcceeEEecCCcEEEEeCC
Confidence 2345788999999987653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=35 Score=35.33 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
.+..++++ |+|.+++.+..-..++.+| ..++ .+.+.....+.++++.|++.++..+. .+.+.+=+...|+--
T Consensus 174 ~~~~i~~~-~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRS-PDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEEC-CCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcc
Confidence 44578897 7888887766544444443 2222 12222246789999998665544432 344433233455433
Q ss_pred EEEeec----CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---ccCCceEEEEEcCCCcEEEEEcCCcE
Q 011970 264 KVFYHL----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 336 (474)
Q Consensus 264 ~tl~~h----~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---~h~~~v~sv~Fspdg~llaS~sD~tI 336 (474)
+....+ ...+..+.|.+ ++.+.+.+.++.|.. -...|+--+... +-....+.+.|.++++.++.+..|+|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcC--CCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 322211 13457788864 445677777776653 334555443332 11235677889999999998888888
Q ss_pred EEEeC
Q 011970 337 AVWNF 341 (474)
Q Consensus 337 klWd~ 341 (474)
--|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 76663
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.17 E-value=7.9 Score=42.76 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.5
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecC------CCeEEEEeCCCcEEEEECCC-Cc-eEEeccccCC----ce
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVRN-AE-LMEVSRTEFM----TP 316 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~------~~~ll~~~~D~tIkIWDv~t-g~-~~~~l~~h~~----~v 316 (474)
...++=.||+.|+++-+..-|-. |.=|++.+.+ .++.++|=.|..|--||.+- |+ .+.+-.+|+- --
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35688899999999988876544 5556654322 24556666888899999872 33 3444444431 22
Q ss_pred EEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE-EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 317 SAFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s-D~tIklWd~~G~ll-~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.+++-.-+| .+|.|| +|-|||+|--|..- +-|.|-... |..|..|.||++|+..| +.++-
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc------------~tyLl 495 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATC------------KTYLL 495 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEec------------ccEEE
Confidence 344445566 455666 99999999755543 345554444 67899999999999887 57777
Q ss_pred EEeC
Q 011970 395 VSSI 398 (474)
Q Consensus 395 lWdi 398 (474)
|-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 7664
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=37 Score=35.08 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEE-EECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 347 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkI-WDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~ 347 (474)
..+..+.+.+ ++.+++.+..|.+.. +| ..++ -.....+-...+.++++.|++++++.+..|.+.+=..+ |+--+
T Consensus 173 g~~~~i~~~~--~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSP--DGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECC--CCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 3557777753 455666666666543 33 2223 22333344467889999999999988878877543333 55332
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
...-+.. .....+.+++|.|++++++.+. +|.|.. ....|+--+.++.+...|
T Consensus 250 ~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~------------~G~v~~-S~d~G~tW~~~~~~~~~~------------- 302 (334)
T PRK13684 250 KPIIPEI-TNGYGYLDLAYRTPGEIWAGGG------------NGTLLV-SKDGGKTWEKDPVGEEVP------------- 302 (334)
T ss_pred cccCCcc-ccccceeeEEEcCCCCEEEEcC------------CCeEEE-eCCCCCCCeECCcCCCCC-------------
Confidence 2221100 0001257899999999888652 676644 334555544443222111
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
...+.+.|-.+++.++.| ..|+|--|
T Consensus 303 ------------------~~~~~~~~~~~~~~~~~G-~~G~il~~ 328 (334)
T PRK13684 303 ------------------SNFYKIVFLDPEKGFVLG-QRGVLLRY 328 (334)
T ss_pred ------------------cceEEEEEeCCCceEEEC-CCceEEEe
Confidence 157778888777766654 46666443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=87.46 E-value=30 Score=33.79 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCeEEEEecCCCcEEEeecC-CCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEE--------
Q 011970 197 NGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-------- 266 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl-------- 266 (474)
.|+.|+-|.+|| +-++++. ........+...|..+..-| -++|++-+ |+.+.+.++.+-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccccc
Confidence 577888899999 7788883 33344444445699999887 33444432 588999988764443311
Q ss_pred ---eecCcceeEEEEEe----cCCCeEEEEeCCCcEEEEECCCC-----ceEEeccccCCceEEEEEcCCCcEEEEEcCC
Q 011970 267 ---YHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDVRNA-----ELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (474)
Q Consensus 267 ---~~h~~~v~~V~F~~----~~~~~ll~~~~D~tIkIWDv~tg-----~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~ 334 (474)
.........+.|.. +.+...++....++|.||..... +..+.+. -...+.+++|. ++.++-+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11122233344433 34556666666669999987763 2222222 22578889888 4445555445
Q ss_pred cEEEEeCC-CcEEE
Q 011970 335 TVAVWNFR-GELVT 347 (474)
Q Consensus 335 tIklWd~~-G~ll~ 347 (474)
...+-|++ |+...
T Consensus 158 ~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 158 GFYLIDLNTGSPSE 171 (275)
T ss_pred ceEEEecCCCCceE
Confidence 57788986 66543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.42 E-value=0.1 Score=59.82 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=84.4
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecC-CCe----EEEEEc--C-C-cEEEEEEcCCc---------eEEEEecCCCCccEE
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--D-K-HVQEIKISPGI---------MLLIFNRSSSHVPLK 253 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~----~l~tl~--~-~-~V~~vafSpg~---------~la~~s~~s~D~tIk 253 (474)
+.| |||+++|.+..||.++.|.+. +|+ |++... + + .|-.+ |.... .+.+... .-...+|
T Consensus 242 ~lS-pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Ittt-d~nre~k 318 (1283)
T KOG1916|consen 242 SLS-PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTT-DVNREEK 318 (1283)
T ss_pred eeC-CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecc-cCCccee
Confidence 355 899999999999999999864 444 554443 1 1 23222 33211 2223211 1224599
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCe------------EEEEeCCCcEEEEECCCCceEEeccccC-CceEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK------------LLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFI 320 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~------------ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~ 320 (474)
+|.-.--+|+ +...-+.+..|. +++++- ++..+.|++|+||.=+--...-++..|. +.|.+-+
T Consensus 319 ~w~~a~w~Cl--l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i 394 (1283)
T KOG1916|consen 319 FWAEAPWQCL--LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDGHPVLSAI 394 (1283)
T ss_pred Eeeccchhhh--hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhcceecccc
Confidence 9998888888 222223444555 444432 2234689999999644333223333332 3555555
Q ss_pred E--c---CCCcEEEEEc--CCcEEEEeCCCc
Q 011970 321 F--L---YENQLFLTFR--NRTVAVWNFRGE 344 (474)
Q Consensus 321 F--s---pdg~llaS~s--D~tIklWd~~G~ 344 (474)
| | |+---+.++. ++.+++|-+.|+
T Consensus 395 ~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~ 425 (1283)
T KOG1916|consen 395 FVTSPERPDHIELITGGPLNRELKIWVSAGE 425 (1283)
T ss_pred ccccCCCccccccccCCcchhhhhhhhhccc
Confidence 5 3 3444566665 889999998654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.2 Score=33.30 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=25.3
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|..+.|+|....||.|+.||.|.|++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 799999999999999999999998865
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=86.63 E-value=9.8 Score=42.56 Aligned_cols=149 Identities=11% Similarity=0.139 Sum_probs=90.4
Q ss_pred cCCCeEEEEE----cC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC---Ce
Q 011970 215 LKNYTMLYSI----SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN---EK 285 (474)
Q Consensus 215 l~tg~~l~tl----~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~---~~ 285 (474)
|-.|++++|. ++ +.|..||+.+|..++...-.-..+.+|.=| -+.+..|+ +|..|.|.|+.. -.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~pa 74 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPA 74 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCc
Confidence 3346666654 32 689999999877655442111112233222 24556665 588888876532 37
Q ss_pred EEEEeCCCcEEEEECCC-----CceEEecccc---C--CceEEEEEcCCCcEEEEEc--CCcEEEEeCC--CcE-EEEec
Q 011970 286 LLVKQENENLQILDVRN-----AELMEVSRTE---F--MTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GEL-VTSFE 350 (474)
Q Consensus 286 ll~~~~D~tIkIWDv~t-----g~~~~~l~~h---~--~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G~l-l~tl~ 350 (474)
|||-+..+.|-+|.+.- ++++..-.-| . .-+-.+.|.|....|+.-. |-.| +.+++ +.. ...++
T Consensus 75 LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 75 LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc
Confidence 89999999999999872 3332211111 1 1223466788888776654 5555 67774 333 44666
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
++.. |-..+|++||+.|+-+=
T Consensus 154 ~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 154 TSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred CCce------EEEEEecCcCCEEEEEe
Confidence 6554 56788999999998764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=86.49 E-value=72 Score=37.18 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCcEEEEeC-CCcEEEEec--cCCCCcCCCCeeEEE--EC-CCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 333 NRTVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIY--IT-SDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 333 D~tIklWd~-~G~ll~tl~--gH~~~~~~~~v~sva--fS-pDg~---~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.++|---|. +|+.+-.++ .|..|.+|..-..+- +. .||+ .++.+++ +|.+.+.|-.|||.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEP 481 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCE
Confidence 345566777 488766554 466676554322222 22 2774 7777776 99999999999999
Q ss_pred EEEecC
Q 011970 404 LAKINA 409 (474)
Q Consensus 404 l~tl~g 409 (474)
+...+.
T Consensus 482 l~~~~e 487 (764)
T TIGR03074 482 IVPVEE 487 (764)
T ss_pred Eeecee
Confidence 987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=86.42 E-value=6.2 Score=42.50 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=62.8
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC----------------
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---------------- 369 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD---------------- 369 (474)
.+....-.+.+++.+|.++++|... =|-|-|+|+. |..++-++|=.+.. |. |--...+.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~-wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CG-WIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EE-EEEeecccccccccccccCCCCcc
Confidence 3444555677889999999998876 6789999994 98888888754421 10 11111111
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..+|+-+.. .-|.|.||++++|..++.++-
T Consensus 379 ~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 346777753 589999999999999999865
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.22 E-value=3.4 Score=40.43 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=53.8
Q ss_pred ccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeE-------eec------CCCceEEEEEEeeCCCEEEEE
Q 011970 81 VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF-------LNV------SPDEVIRSLFYNKNNDSLITV 147 (474)
Q Consensus 81 ~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~-------l~g------~~~~~i~sv~fspdg~~Lis~ 147 (474)
..|+|.-.++|.-+...++.|.+...+|.+.+||+.+++++.. |+. .....|.++.++.+|.-||+-
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 3677888888888888899999999999999999999887543 331 244668888888888877764
Q ss_pred E
Q 011970 148 S 148 (474)
Q Consensus 148 S 148 (474)
|
T Consensus 85 s 85 (219)
T PF07569_consen 85 S 85 (219)
T ss_pred e
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=86.21 E-value=5.9 Score=42.62 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=55.1
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC----------------
Q 011970 222 YSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN---------------- 283 (474)
Q Consensus 222 ~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~---------------- 283 (474)
+.|.+ ..+.+|..+|.+.||+.+ .+-+-|-|+|+.+|..++-++| .+--.+.|++-..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKG--YRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKG--YRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhcc--CccceEEEEEeecccccccccccccCCCC
Confidence 34444 358899999988887774 2346899999999999998886 3344445543211
Q ss_pred --C-eEEE-EeCCCcEEEEECCCCceE
Q 011970 284 --E-KLLV-KQENENLQILDVRNAELM 306 (474)
Q Consensus 284 --~-~ll~-~~~D~tIkIWDv~tg~~~ 306 (474)
- .|++ .-.-+.|.||++++|..+
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEE
Confidence 1 2223 446788999999888754
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=86.20 E-value=37 Score=33.64 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=81.7
Q ss_pred cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEE-ECCCCc
Q 011970 228 HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNAE 304 (474)
Q Consensus 228 ~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW-Dv~tg~ 304 (474)
.+.+.++|| |..+|..........+.++. .|..... +.+ .......|. +++..+.+...+...+++ +..+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999997 55565554112223455555 3433333 333 355666775 444445555566666666 344554
Q ss_pred eE--EeccccCC-ceEEEEEcCCCcEEEEEc----CCcEEEEeC----CCc------EEEEeccCCCCcCCCCeeEEEEC
Q 011970 305 LM--EVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE------LVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 305 ~~--~~l~~h~~-~v~sv~Fspdg~llaS~s----D~tIklWd~----~G~------ll~tl~gH~~~~~~~~v~svafS 367 (474)
.. .+-..... .|.+|.+||||..+|--. ++.|.|=-+ .|. .+........ .+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-----~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-----DVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-----cceeeeec
Confidence 33 33222222 899999999999988765 566666544 241 1111111111 26799999
Q ss_pred CCCCEEEEEec
Q 011970 368 SDQDLIISYCK 378 (474)
Q Consensus 368 pDg~~LaS~s~ 378 (474)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999998764
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.52 E-value=25 Score=39.88 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=69.3
Q ss_pred EEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEE-EecCCCeEEEEeCCCcEEEEECC-----CC
Q 011970 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDF-IEQFNEKLLVKQENENLQILDVR-----NA 303 (474)
Q Consensus 231 ~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F-~~~~~~~ll~~~~D~tIkIWDv~-----tg 303 (474)
-+.-|.=+++|+..++ -.++.|||...|.+...-. ...+.|..++| +.|+++.+++-|..+.|.|+--. +.
T Consensus 34 li~gss~~k~a~V~~~--~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSS--RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCcEEEEECC--CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444433344554322 3579999999988654322 23478889998 45778888888999999998532 11
Q ss_pred ----ceEEe--ccccC-CceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 304 ----ELMEV--SRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 304 ----~~~~~--l~~h~-~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
..++. ...|+ ..|...+|.+||.+++.++ +.+-|.|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 12221 23444 5788999999998876543 45556664
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=85.02 E-value=58 Score=34.80 Aligned_cols=264 Identities=15% Similarity=0.094 Sum_probs=123.8
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEe--eCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYN--KNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fs--pdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
.|..|.|+ .--||.+-.+|-|-||....++.-. +.+.=..+.++ +.. ..+ -+..-+.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-----~~~~~~~~~~~~~~~~----------~~~---~~~~l~di 64 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-----NREQPPDLDYNFRRFS----------LNN---SPGKLTDI 64 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------------GGG---SS-SEEE-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-----ccCCCcccCccccccc----------ccC---CCcceEEe
Confidence 47888888 3357888899999999887655322 01111111111 100 000 00112222
Q ss_pred eEeccCCCCCccc---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C--------CcEEEE
Q 011970 166 EYIRRGKPDSGFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KHVQEI 232 (474)
Q Consensus 166 w~i~~G~~~~~~~---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~--------~~V~~v 232 (474)
-+.....+-++|. |.+.. .+.+-.++.|+ =| .+|-|.+||++.|-|+.....+|.-+ + ..|..+
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~-~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAK-QGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp GGG--TT-SEEEEEEEEE----S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred hhhCCcccccccCchhheecc-CCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 2222233222221 22222 45566788873 36 89999999999999999999888743 1 358888
Q ss_pred EEcC-----C----ceEEEEecCCCCccEEEEecC---CCeEEEEEe----ecCcceeEEEEEecCCC------------
Q 011970 233 KISP-----G----IMLLIFNRSSSHVPLKILSIE---DGTVLKVFY----HLLHRNKKVDFIEQFNE------------ 284 (474)
Q Consensus 233 afSp-----g----~~la~~s~~s~D~tIkLWdi~---tG~~L~tl~----~h~~~v~~V~F~~~~~~------------ 284 (474)
.|+- + ..|+++.. .+.+.++.|- .|.-...|. .+...+.++.....+.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred EEEEEecCCCcccceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 8881 1 23333322 2444444332 122222222 23345555553321111
Q ss_pred --------eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE-----cCCCcEEEEEc-CCcEEEEeC-CCcEEEEe
Q 011970 285 --------KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----LYENQLFLTFR-NRTVAVWNF-RGELVTSF 349 (474)
Q Consensus 285 --------~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-----spdg~llaS~s-D~tIklWd~-~G~ll~tl 349 (474)
.+++...+..|||...-++++............++.| ...+..|++-. ||.|+++.+ .=+.+..+
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 2444455788999999988877543333234445555 34677777776 999999999 65655555
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.=+.... .-.+....|+++|+.+.=.+.
T Consensus 299 ~l~~~~d-~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 299 SLPPPLD-SRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp E-SS----HHHHTT-EE-TTS-EEEE-SS
T ss_pred cCCCccc-cccccccEECCCCCEEEEeCc
Confidence 4322100 001356788999998876553
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=84.29 E-value=14 Score=37.00 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=51.1
Q ss_pred EEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCC---cEE-EEec---cCCCCcCCCCeeEE
Q 011970 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRG---ELV-TSFE---DHLLWHPDCNTNNI 364 (474)
Q Consensus 296 kIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G---~ll-~tl~---gH~~~~~~~~v~sv 364 (474)
-+||+.+++.............+=+|.|||++|.+|. || .|++.+... .|- .... ...-|- .++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-----pT~ 123 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-----PTA 123 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-----ccc
Confidence 3789998877654344455666667999999999986 43 688888522 221 1111 112352 457
Q ss_pred EECCCCCEEEEEec
Q 011970 365 YITSDQDLIISYCK 378 (474)
Q Consensus 365 afSpDg~~LaS~s~ 378 (474)
..-|||+.|+.|+.
T Consensus 124 ~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 124 TTLPDGRVLIVGGS 137 (243)
T ss_pred eECCCCCEEEEeCc
Confidence 77899999998864
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=83.10 E-value=59 Score=33.35 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred ccEEEEecCCCeEEEEEe--ecC-------------------------cceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 250 VPLKILSIEDGTVLKVFY--HLL-------------------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~--~h~-------------------------~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
..+.--|++||++|.... .|. -++.+|+.. .+|.+|++.=.=.+|-+.|-++
T Consensus 96 ~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 96 DVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKD-DDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred ceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeec-CCccEEEEecccCEEEEEECCC
Confidence 456677899999987544 111 134555543 2344554444668899999999
Q ss_pred CceEEecccc
Q 011970 303 AELMEVSRTE 312 (474)
Q Consensus 303 g~~~~~l~~h 312 (474)
|+.+-.+.|.
T Consensus 175 G~I~W~lgG~ 184 (299)
T PF14269_consen 175 GKIIWRLGGK 184 (299)
T ss_pred CcEEEEeCCC
Confidence 9998887665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=59 Score=36.19 Aligned_cols=194 Identities=8% Similarity=0.050 Sum_probs=100.3
Q ss_pred CCeEEEEecCC------CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCceEEEEecCCC--CccEEEEecCCCeEEE-
Q 011970 197 NGKVLTYSAQD------SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLK- 264 (474)
Q Consensus 197 nGk~LaS~s~D------~tiKlWdl~tg~~l--~tl~~~-~V~~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~~L~- 264 (474)
+|++.+.|+.+ .++-.+|..+.+-. ..+... .-.+++.-.|...++++..+. -.++..+|.++.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 68888888854 23556676665421 111111 111333335666666543221 1358889988764322
Q ss_pred -EEeecCcceeEEEEEecCCCeEEEEeCC-----------------------CcEEEEECCCCceEEeccccCCceEEEE
Q 011970 265 -VFYHLLHRNKKVDFIEQFNEKLLVKQEN-----------------------ENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 265 -tl~~h~~~v~~V~F~~~~~~~ll~~~~D-----------------------~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
.+...... ..++- -+|...++||.+ .++..+|.++.+-.....-......+-+
T Consensus 383 ~~mp~~r~~-~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSS-YGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCccccc-ccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 22211111 12221 224444446654 3577899988776543221111112222
Q ss_pred EcCCCcEEEEEc-C------CcEEEEeCCC-c---EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 321 FLYENQLFLTFR-N------RTVAVWNFRG-E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 321 Fspdg~llaS~s-D------~tIklWd~~G-~---ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
-.-+|++.+.|+ + .+|..+|.+. + .+..+.-.... ...+++ +|++.+.|+.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-----~~~~~~--~~~iyv~Gg~----------- 521 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-----LHTILH--DNTIMMLHCY----------- 521 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-----ceeEEE--CCEEEEEeee-----------
Confidence 345678888876 4 2467788743 2 33444332221 233433 8899998876
Q ss_pred CC--eEEEEeCCCCeEEEEecCCC
Q 011970 390 AG--SINVSSILTGKCLAKINATN 411 (474)
Q Consensus 390 Dg--tIklWdi~tG~cl~tl~gH~ 411 (474)
|+ ++..+|+.|++--..-..|+
T Consensus 522 ~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 522 ESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cceeehhhcCcccccccchhhhcC
Confidence 44 78888888877554444444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=68 Score=35.67 Aligned_cols=202 Identities=7% Similarity=-0.014 Sum_probs=99.8
Q ss_pred eeccEEEEeeCC------CeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 96 AARDIVFALAHS------GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 96 ~s~~~las~s~d------gtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
..+.+.+.|+.+ .++-.+|..+++ .+..++. ..-...+-.-+|...|.++..+.. ...++..+|
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~---~R~~~~~~~~~g~IYviGG~~~~~-----~~~sve~Yd 373 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK---NRCRFSLAVIDDTIYAIGGQNGTN-----VERTIECYT 373 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc---hhhceeEEEECCEEEEECCcCCCC-----CCceEEEEE
Confidence 347777887754 245667776654 2222221 111112223466666665432211 124577778
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-----------------------cEEEeecCCCe--EEE
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--MLY 222 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~-----------------------tiKlWdl~tg~--~l~ 222 (474)
..+.+....-++-.. ......+++ +|++.+.|+.++ ++-.+|..+.+ .+.
T Consensus 374 p~~~~W~~~~~mp~~--r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 374 MGDDKWKMLPDMPIA--LSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCCCeEEECCCCCcc--cccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 766654111111111 111223444 699999998763 35566666554 122
Q ss_pred EEcCCcEE-EEEEcCCceEEEEecCCC---CccEEEEecCC-C--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCC--
Q 011970 223 SISDKHVQ-EIKISPGIMLLIFNRSSS---HVPLKILSIED-G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-- 293 (474)
Q Consensus 223 tl~~~~V~-~vafSpg~~la~~s~~s~---D~tIkLWdi~t-G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~-- 293 (474)
.+...... +++.-.|.+.++++.... ...+..+|.++ . +.+..+.........+. -+|...++|+.|+
T Consensus 449 ~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~---~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 449 NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL---HDNTIMMLHCYESYM 525 (557)
T ss_pred CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE---ECCEEEEEeeeccee
Confidence 22211111 223334555555532211 12467889886 3 34444543222222222 2345555688787
Q ss_pred cEEEEECCCCceEEeccccC
Q 011970 294 NLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~ 313 (474)
++..+|+.+.+-..+-..|.
T Consensus 526 ~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 526 LQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ehhhcCcccccccchhhhcC
Confidence 88899999888765544454
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=81.95 E-value=84 Score=34.30 Aligned_cols=149 Identities=17% Similarity=0.089 Sum_probs=75.3
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccccC-CceEEEEEcCCC
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF-MTPSAFIFLYEN 325 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~-~~v~sv~Fspdg 325 (474)
...+-+.|. +|.+...+.....+...+.+ -.++.|++++. ..++..|+. |+.+.. +.++. ..=-.+.+.|+|
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEECC-CccEEEEEccCccccceeeE--cCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 345778884 78888777632222211333 34677777655 788888864 554332 22210 000136688999
Q ss_pred cEEEEEc--------------CCcEEEEeCCCcEEEE--eccCCCCcCC--------------------CCeeEEEECC-
Q 011970 326 QLFLTFR--------------NRTVAVWNFRGELVTS--FEDHLLWHPD--------------------CNTNNIYITS- 368 (474)
Q Consensus 326 ~llaS~s--------------D~tIklWd~~G~ll~t--l~gH~~~~~~--------------------~~v~svafSp- 368 (474)
++|+.+. ...|-..|.+|+.+.. +.+|...... .=+|+|.+.|
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 9988655 2234445545777664 3344321110 1278999988
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
|+.+|+|.=. -..|-..|..||+....|-+|...
T Consensus 282 dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 282 DDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 7788887532 346767788899999999888763
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=81.50 E-value=46 Score=38.06 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=96.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccc--cceeeEeecCCC-ceEEEEEEe----eC-CCEEEEEEeecCCCcc
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET--NRRICFLNVSPD-EVIRSLFYN----KN-NDSLITVSVYASDNFS 156 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~t--g~~l~~l~g~~~-~~i~sv~fs----pd-g~~Lis~S~~~s~d~s 156 (474)
-..+|..|-|. +..|+...++|.|++|+.+. .+.+-++...+. ..+++-|.+ .+ .+.+.+++.-.+..
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k-- 205 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK-- 205 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc--
Confidence 47789999998 89999999999999999832 222223333332 345553322 22 24566666422233
Q ss_pred ceeeeEEEEeEe-ccCCCCCccceeeec----cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc------
Q 011970 157 SLKCRSTKIEYI-RRGKPDSGFALFESE----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------ 225 (474)
Q Consensus 157 ~Lk~~~~~iw~i-~~G~~~~~~~lf~~~----~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~------ 225 (474)
...|+..+ ..+. +.++-. +.--+..-.|...+|++.-. .+++|-+|++.+-+..++++
T Consensus 206 ----~~ykL~~l~~~~~-----~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~ 274 (670)
T PF10395_consen 206 ----LSYKLISLSNESS-----SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIID 274 (670)
T ss_pred ----EEEEEEEeccCCc-----ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhc
Confidence 34444444 1111 122221 00011123344358987766 67899999999888888775
Q ss_pred CC--cEEE-EEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 226 DK--HVQE-IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 226 ~~--~V~~-vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.. .+.+ .+.||+..|++. ..+|.|.|+.-..+|.+++
T Consensus 275 ~~~~~~vSl~~~s~nRvLLs~-----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 275 KESDDLVSLKPPSPNRVLLSV-----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cccccceEeecCCCCeEEEEc-----CCEEEEEeehhhhhhhhhh
Confidence 11 2222 333457776654 4689999998877887776
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=81.45 E-value=23 Score=36.93 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=68.1
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIF 243 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~ 243 (474)
+.||++++... + + +..|.+-.|. ||++-++-+..+++.-+|.++|+..-... .+....++|. |.++.++
T Consensus 189 vidv~s~evl~-----~-G-LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~-G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVA-----S-G-LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA-GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEE-----c-C-ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee-CCEEEEE
Confidence 56777776522 1 1 3333344553 79999999999999999998887443332 3467778887 6666555
Q ss_pred ecCCC-C----------------ccEEEEecCCCeEEEEEe--ecCcceeEEEEEe
Q 011970 244 NRSSS-H----------------VPLKILSIEDGTVLKVFY--HLLHRNKKVDFIE 280 (474)
Q Consensus 244 s~~s~-D----------------~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~ 280 (474)
-+... + .-|.+-|+.||.++..|+ +-...++.|+..|
T Consensus 259 mSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 259 LSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred eccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence 44322 1 236777888988887765 3445556666664
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.92 E-value=25 Score=35.48 Aligned_cols=135 Identities=8% Similarity=0.056 Sum_probs=79.7
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE-EEEecCCCcEE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYK 211 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~-LaS~s~D~tiK 211 (474)
+.--.+|+|++.+-.=++-+++|....|-- +.|- ..+|... .|.. +.-+..++++ .|.|. -..-|.+.+|+
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~L-y~~~-~~h~v~~---i~~~--v~IsNgl~Wd-~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGEL-YSWL-AGHQVEL---IWNC--VGISNGLAWD-SDAKKFYYIDSLNYEVD 183 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEE-EEec-cCCCcee---eehh--ccCCcccccc-ccCcEEEEEccCceEEe
Confidence 334457999986655556666655444322 2222 4444421 3433 3444567887 45554 45677888999
Q ss_pred Eee--cCCCeE-----EEEEcC-----CcE-EEEEEcC-Cc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 212 VFD--LKNYTM-----LYSISD-----KHV-QEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 212 lWd--l~tg~~-----l~tl~~-----~~V-~~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
-|| ..||.. ++.+.. +.. -..++-. |. .+|+++ -++|.-.|..||+.|+++.-....+.++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 999 667764 233321 111 0122221 22 223332 2588889999999999999878899999
Q ss_pred EEE
Q 011970 277 DFI 279 (474)
Q Consensus 277 ~F~ 279 (474)
+|-
T Consensus 260 cFg 262 (310)
T KOG4499|consen 260 CFG 262 (310)
T ss_pred Eec
Confidence 995
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=80.43 E-value=91 Score=38.36 Aligned_cols=248 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC----------------CCccceeeeccccCceEEEEeCC
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP----------------DSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~----------------~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
+.++|+++|.+-.. |. ..||.-| .+|-. .++.+|-+. ++.||..++.+|-
T Consensus 478 kGIa~dk~g~lYfa------D~------t~IR~iD-~~giIstlig~~~~~~~p~~C~~~~kl~~~-~leWPT~LaV~Pm 543 (1899)
T KOG4659|consen 478 KGIAFDKMGNLYFA------DG------TRIRVID-TTGIISTLIGTTPDQHPPRTCAQITKLVDL-QLEWPTSLAVDPM 543 (1899)
T ss_pred CceeEccCCcEEEe------cc------cEEEEec-cCceEEEeccCCCCccCccccccccchhhe-eeecccceeecCC
Q ss_pred CCeEEEEecC-------CCcEEEeecCCCeEEEEEcCC---------------cEEEEEEcCCceEEEEecCCCCccEEE
Q 011970 197 NGKVLTYSAQ-------DSIYKVFDLKNYTMLYSISDK---------------HVQEIKISPGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 197 nGk~LaS~s~-------D~tiKlWdl~tg~~l~tl~~~---------------~V~~vafSpg~~la~~s~~s~D~tIkL 254 (474)
|+.+++--.. ++-|+ +--|.+++---.+ --++|+|++.+.|.++-+++
T Consensus 544 dnsl~Vld~nvvlrit~~~rV~---Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~------- 613 (1899)
T KOG4659|consen 544 DNSLLVLDTNVVLRITVVHRVR---IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG------- 613 (1899)
T ss_pred CCeEEEeecceEEEEccCccEE---EEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc-------
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe----CCCcEEE-EECCCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQI-LDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkI-WDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
.++..|.-..-+++.-+.++ -|+-+.- -|.-+++-..-...|...++++|.+|||.+.+
T Consensus 614 ----------------rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~I 677 (1899)
T KOG4659|consen 614 ----------------RRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVII 677 (1899)
T ss_pred ----------------hhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEE
Q ss_pred EEc-CCcEE----------------EEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE---ecCCCccccccCC
Q 011970 330 TFR-NRTVA----------------VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY---CKAEPEDQWMEGS 389 (474)
Q Consensus 330 S~s-D~tIk----------------lWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~---s~~~~~~~~~~s~ 389 (474)
.-+ +-.|| +-+..-+.+.+|.-|..-.. +.++ ++-+--+-.+| +.
T Consensus 678 AD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~s---Tvsl-iTget~ynFtY~v~ss----------- 742 (1899)
T KOG4659|consen 678 ADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSS---TVSL-ITGETFYNFTYQVDSS----------- 742 (1899)
T ss_pred ecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeee---eEEE-EeceeEEEEEEecCCC-----------
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCc
Q 011970 390 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGL 468 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~Dgt 468 (474)
+|.|-=---.+|..++.++..+ ...-..-.|+||. +.+-+.||+
T Consensus 743 ~~~lsei~~a~Gn~l~ilrd~~-----------------------------------s~~~~~~~~~~q~~~l~~~~~g~ 787 (1899)
T KOG4659|consen 743 IGMLSEITDASGNVLRVLRDND-----------------------------------SLFDLETTLGGQTTLLMSAYDGT 787 (1899)
T ss_pred cchhhhhhhcCCcEEEEEecCC-----------------------------------CCcceeecCCCcEEEEEEecCCc
Q ss_pred EE
Q 011970 469 VH 470 (474)
Q Consensus 469 Vk 470 (474)
++
T Consensus 788 L~ 789 (1899)
T KOG4659|consen 788 LE 789 (1899)
T ss_pred ee
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.42 E-value=21 Score=37.80 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.+|..++..+.||+-..+|+|++|+.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 5999999999999999999999999973
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 474 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 7e-09
Identities = 72/431 (16%), Positives = 134/431 (31%), Gaps = 128/431 (29%)
Query: 16 SGRRVLAKKRVRSDG----FVNSV---------------KKLQR------REICSKRDRA 50
SG+ +A S + + LQ+ S+ D +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 51 FSIS----NAQERFRNMHLVEEY--------DTHDPK------GHCPFVLPFLMKRTK-V 91
+I + Q R + + Y + + K C +L L R K V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-IL--LTTRFKQV 277
Query: 92 IEIV-AARDIVFALAHSGVCAAFSRETNRRIC--FLNVS----PDEVIR------SLFYN 138
+ + AA +L H + + + + +L+ P EV+ S+
Sbjct: 278 TDFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 139 KNNDSLITVSVYASDNFSSL-KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEF-DDV 196
D L T + N L + + + +P +F+ F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDR-------LSVFPPSA 385
Query: 197 N--GKVL-TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLK 253
+ +L V + N YS+ +K +E IS I + ++ LK
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSI-------YLELK 436
Query: 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD-------------V 300
+ + LHR+ ++ +N ++ LD +
Sbjct: 437 VKLENEYA--------LHRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 360
+ E M + R F+ F FL E ++ R+ + A WN G ++ + + + P
Sbjct: 485 EHPERMTLFRMVFLD---FRFL-EQKI----RHDSTA-WNASGSILNTLQQLKFYKP--- 532
Query: 361 TNNIYITSDQD 371
YI D D
Sbjct: 533 ----YIC-DND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 56/318 (17%), Positives = 104/318 (32%), Gaps = 111/318 (34%)
Query: 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI-SDKHVQEIKISPGIMLLIFNRSSSH 249
E +L+ +D+ FD K+ M SI S + + I +S
Sbjct: 13 EHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD------------ 59
Query: 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309
L++F+ LL + +++ +++F E++L + N LM
Sbjct: 60 --------AVSGTLRLFWTLLSKQEEM--VQKFVEEVL--RINYKF---------LMSPI 98
Query: 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWN----F------RGELVTSFEDHLLWHPDC 359
+TE PS +Y Q R+R +N F R + LL
Sbjct: 99 KTEQRQPSMMTRMYIEQ-----RDRL---YNDNQVFAKYNVSRLQPYLKLRQALL----- 145
Query: 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNC-SPKVD 417
+ ++++I +G GS GK +A C S KV
Sbjct: 146 -----ELRPAKNVLI------------DGVLGS--------GKTWVA---LDVCLSYKVQ 177
Query: 418 DE---------LGSSSTGKS--KKLNKSSYIRSTVGEALEDITS---LFYDEERNEI--- 460
+ L + ++ ++ + L K Y + D +S L + E+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 461 --YTGNRHGLV---HVWS 473
+ L+ +V +
Sbjct: 238 LKSKPYENCLLVLLNVQN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.91 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.91 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.9 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.9 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.89 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.84 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.79 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.78 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.78 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.71 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.69 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.64 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.58 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.57 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.56 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.54 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.52 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.52 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.51 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.45 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.43 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.43 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.42 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.41 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.29 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.24 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.21 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.09 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.03 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.03 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.02 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.94 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.93 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.93 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.93 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.89 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.87 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.81 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.81 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.78 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.78 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.69 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.64 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.62 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.6 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.58 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.57 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.52 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.49 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.47 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.43 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.4 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.38 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.34 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.32 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.3 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.25 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.24 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.23 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.21 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.17 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.14 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.13 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.96 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.91 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.81 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.73 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.67 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.67 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.64 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.6 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.58 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.38 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.29 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.26 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.17 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.82 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.37 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.32 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.04 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.02 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.93 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.83 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.61 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.59 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.47 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.21 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.88 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.76 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.57 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 91.57 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.3 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.19 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.08 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 91.05 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 90.21 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 89.16 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 88.72 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.63 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 88.27 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.2 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 87.94 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.02 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.85 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.85 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.21 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.89 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 83.3 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.36 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=454.96 Aligned_cols=320 Identities=12% Similarity=0.129 Sum_probs=267.1
Q ss_pred ccccEEEEEee--cc-EEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 87 KRTKVIEIVAA--RD-IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 87 ~~~~V~~i~~s--~~-~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
|...|..+.|+ +. .||+++.|++|++||..+++++.+|.+ |...|++|+|+|||++|||+| .| +++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s----~D------~~i 214 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTG----GD------GTI 214 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEE----CC------CcE
Confidence 66789999999 43 699999999999999999999999997 888999999999999999976 55 699
Q ss_pred EEeEeccCCCCCccc---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE----------------
Q 011970 164 KIEYIRRGKPDSGFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------------- 224 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl---------------- 224 (474)
+||++.+|++...+. +....|...|.+|+|+ |||++||+++.|++|||||+.+++++.++
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 999999998743211 0001355678899998 79999999999999999999999876654
Q ss_pred -----------------------------cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEE-eec----
Q 011970 225 -----------------------------SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHL---- 269 (474)
Q Consensus 225 -----------------------------~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h---- 269 (474)
|...|.+++||| |.+|+++ +.|++|++||+++|+++..+ .+|
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~---s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA---DAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE---eCCCcEEEEECCCCceeeecccCCcceE
Confidence 234699999998 5556655 55899999999998876554 122
Q ss_pred -----------------------------------------------------------------------------Ccc
Q 011970 270 -----------------------------------------------------------------------------LHR 272 (474)
Q Consensus 270 -----------------------------------------------------------------------------~~~ 272 (474)
...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence 123
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE--EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEE
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVT 347 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~--~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~ 347 (474)
+.+|+|+ |++..|++++.|++|+|||+.++++. .. .+|...|.+++|||||++|++++ |++|++||+. ++++.
T Consensus 451 v~~va~s-pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 451 SSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred ceEEEEe-CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 4567776 67888888999999999999887653 44 68999999999999999999999 9999999994 77766
Q ss_pred E--eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EE-EEecCC-CCCCCCccccCC
Q 011970 348 S--FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CL-AKINAT-NCSPKVDDELGS 422 (474)
Q Consensus 348 t--l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~-cl-~tl~gH-~~~~~~~~~~~~ 422 (474)
+ +.+|... |++|+|||||++|||+|. |++|||||+.+++ ++ ..+.+| ..
T Consensus 529 ~~~~~~H~~~-----V~~v~fspdg~~lasgs~-----------D~~v~lW~~~~~~~~~~~~~~~h~~~---------- 582 (611)
T 1nr0_A 529 TNSWTFHTAK-----VACVSWSPDNVRLATGSL-----------DNSVIVWNMNKPSDHPIIIKGAHAMS---------- 582 (611)
T ss_dssp CCCCCCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTCTTSCCEEETTSSTTS----------
T ss_pred eeeeeecccc-----eeEEEECCCCCEEEEEEC-----------CCcEEEEECCCcccccchhhccCccc----------
Confidence 5 4459887 799999999999999987 9999999998876 44 788899 54
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 423 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|+|||+ ||||+.|++||||+.
T Consensus 583 ------------------------~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 583 ------------------------SVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ------------------------CEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ------------------------CeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 899999999999 999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=452.89 Aligned_cols=327 Identities=12% Similarity=0.101 Sum_probs=260.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC--------
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN-------- 154 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d-------- 154 (474)
|...|..++|+ |++||+++.||+|+|||+.+++ ++.++.+ |.+.|++|+|+|||+.|++++.+....
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~-~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc-cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 44455556665 9999999999999999987654 4557776 678899999999999888776321000
Q ss_pred ------------------cc---c--e----eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 155 ------------------FS---S--L----KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 155 ------------------~s---~--L----k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|+ . | .-.+++||+...+++.. .+. +|..+|.+|+|+ |||++||+++.|
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---~l~-~H~~~V~~v~fs-pdg~~las~s~D 211 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFG-EHTKFVHSVRYN-PDGSLFASTGGD 211 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EEC-CCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee---eec-cccCceEEEEEC-CCCCEEEEEECC
Confidence 00 0 0 00456777766665432 122 356678899998 799999999999
Q ss_pred CcEEEeecCCCeEEEEE---------cCCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEE-----------
Q 011970 208 SIYKVFDLKNYTMLYSI---------SDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVF----------- 266 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl---------~~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl----------- 266 (474)
++|||||+.+|+++.++ |...|.+|+|||+ .+||++ +.|++|||||+++|++++++
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~---s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE---eCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999999887 3457999999985 556655 55899999999999887655
Q ss_pred --------------------------------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-ccc-
Q 011970 267 --------------------------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTE- 312 (474)
Q Consensus 267 --------------------------------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h- 312 (474)
.+|...|.+++|+ |++.+|++++.|++|++||+.++++...+ .+|
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 4688889999998 67889999999999999999998776543 112
Q ss_pred --------------------------------------------------------------------------------
Q 011970 313 -------------------------------------------------------------------------------- 312 (474)
Q Consensus 313 -------------------------------------------------------------------------------- 312 (474)
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
...+.+++|+|||++||+++ |++|+|||++ +++ +.+ .+|... |++|+|||||++||+++.
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~-----v~~v~fspdg~~las~s~---------- 511 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE-----ITSVAFSNNGAFLVATDQ---------- 511 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC-----EEEEEECTTSSEEEEEET----------
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc-----eEEEEECCCCCEEEEEcC----------
Confidence 23467899999999999999 9999999996 443 345 688876 799999999999999987
Q ss_pred CCCeEEEEeCCC-CeEEEE--ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 389 SAGSINVSSILT-GKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 389 ~DgtIklWdi~t-G~cl~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
|++|+|||+.+ ++++.+ +.+|+. .|++|+|||||++|||||.
T Consensus 512 -d~~v~~w~~~~~~~~~~~~~~~~H~~----------------------------------~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 512 -SRKVIPYSVANNFELAHTNSWTFHTA----------------------------------KVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp -TSCEEEEEGGGTTEESCCCCCCCCSS----------------------------------CEEEEEECTTSSEEEEEET
T ss_pred -CCCEEEEEcCCCCceeeeeeeeeccc----------------------------------ceeEEEECCCCCEEEEEEC
Confidence 99999999988 888765 344875 8999999999999999999
Q ss_pred CCcEEEccC
Q 011970 466 HGLVHVWSN 474 (474)
Q Consensus 466 DgtVklWd~ 474 (474)
|++|||||.
T Consensus 557 D~~v~lW~~ 565 (611)
T 1nr0_A 557 DNSVIVWNM 565 (611)
T ss_dssp TSCEEEEET
T ss_pred CCcEEEEEC
Confidence 999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=430.99 Aligned_cols=312 Identities=13% Similarity=0.240 Sum_probs=276.4
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.|..+|..|.|+ ++.|++++.|+++++|+. +++++.++.+ |...|++++|+|||+.|++++ .| .++
T Consensus 260 ~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~~----~d------~~i 327 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS----DD------KTV 327 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCE
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec-CCCCeEEEEECCCCCEEEEEe----CC------CeE
Confidence 477788999988 889999999999999996 5899999997 778899999999999999976 45 689
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIML 240 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~l 240 (474)
++|++...++ . .+. .+...+..++|+ |||++||+++.|++|+|||. +++++.++. ...|.+++||| +..|
T Consensus 328 ~~w~~~~~~~-~---~~~-~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 328 KLWNRNGQHL-Q---TLT-GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp EEEETTSCEE-E---EEC-CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEEeCCCCee-E---EEe-CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 9999644332 1 122 234556689998 79999999999999999995 778888875 46899999998 4556
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEE
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
+++ +.|++|+|||. +|++++++.+|...+..++|+ |++..|++++.|++|++||+ +++++..+.+|...|.+++
T Consensus 401 ~~~---~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 401 ASA---SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 474 (577)
T ss_dssp EEE---ETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE
T ss_pred EEE---eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEE
Confidence 655 45899999995 789999999999999999997 67888888999999999995 7888999999999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+|||++||+++ |++|+|||.+|+++++|++|... |++|+|+|||++||+++. |++|+|||.
T Consensus 475 ~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~-----------dg~v~lwd~- 537 (577)
T 2ymu_A 475 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWNR- 537 (577)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSEEEEECT-
T ss_pred EcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCC-----EEEEEEcCCCCEEEEEEC-----------cCEEEEEeC-
Confidence 999999999999 99999999999999999999987 799999999999999987 999999995
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+|++++++.+|+. .|++|+|+|||++|+||+.|++|+|||
T Consensus 538 ~~~~~~~~~~h~~----------------------------------~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 NGQLLQTLTGHSS----------------------------------SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSCEEEEEECCSS----------------------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEcCCCC----------------------------------CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8999999999996 899999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=405.38 Aligned_cols=288 Identities=16% Similarity=0.185 Sum_probs=254.0
Q ss_pred cceeeEeecCCCceEEEEEEeeC----CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEE
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVE 192 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspd----g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~ 192 (474)
|..++.+++ |.+.|++|+|+|+ +++|+|+| .| ++++||++..+++.. .+.. +|...+.+|+
T Consensus 22 g~~~~~~~~-H~~~V~~v~~~~~~~~~~~~l~tgs----~D------~~v~vW~~~~~~~~~---~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 22 GILFKQEQA-HDDAIWSVAWGTNKKENSETVVTGS----LD------DLVKVWKWRDERLDL---QWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEEEEETTS-SSSCEEEEEEC-------CEEEEEE----TT------SCEEEEEEETTEEEE---EEEECCCSSCEEEEE
T ss_pred hheeeeccc-CCCcEEEEEEecCCCCCCCEEEEEc----CC------CCEEEEECCCCCeee---eeeeccCCCCEEEEE
Confidence 455566675 8899999999985 67899976 55 699999998776422 1221 3556677999
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
|+ +++++|++++.|++|||||+.+++++.++.. ..|+.++|+|+ .+|+++ +.|++|++||+++|+.+.++..|
T Consensus 88 ~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g---~~dg~v~i~~~~~~~~~~~~~~~ 163 (321)
T 3ow8_A 88 IS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG---THVGKVNIFGVESGKKEYSLDTR 163 (321)
T ss_dssp EC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE---CTTSEEEEEETTTCSEEEEEECS
T ss_pred EC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCcEEEEEcCCCceeEEecCC
Confidence 98 7999999999999999999999999998864 57899999984 555554 55899999999999999999999
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 347 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~ 347 (474)
...+.+++|+ |++..|++++.|++|+|||+++++++.++.+|...|.+++|+||+++|++++ |++|+|||++ ++++.
T Consensus 164 ~~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 164 GKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred CceEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 8999999997 6788899999999999999999999999999999999999999999999999 9999999995 99999
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
++.+|..+ |.+++|+|||++|+|++. |++|+|||+.+++|++++.+|+.
T Consensus 243 ~~~~h~~~-----v~~~~~sp~~~~l~s~s~-----------D~~v~iwd~~~~~~~~~~~~h~~--------------- 291 (321)
T 3ow8_A 243 TLSGHASW-----VLNVAFCPDDTHFVSSSS-----------DKSVKVWDVGTRTCVHTFFDHQD--------------- 291 (321)
T ss_dssp EECCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEECCCSS---------------
T ss_pred EEcCCCCc-----eEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEcCCCC---------------
Confidence 99999987 789999999999999987 99999999999999999999986
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|+|||+.|+||+.||+|+|||.
T Consensus 292 -------------------~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 292 -------------------QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -------------------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred -------------------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-51 Score=417.37 Aligned_cols=294 Identities=17% Similarity=0.270 Sum_probs=261.2
Q ss_pred EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCce
Q 011970 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (474)
Q Consensus 110 iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~ 189 (474)
.+.|... .....+|.+ |...|++++|+|+++.|+++| .| .+++|||+.+|++... +. +|...+.
T Consensus 91 ~~~~~~~-~~~~~~l~g-h~~~V~~~~~~p~~~~l~s~s----~D------g~i~vwd~~~~~~~~~---l~-~h~~~V~ 154 (410)
T 1vyh_C 91 PKEWIPR-PPEKYALSG-HRSPVTRVIFHPVFSVMVSAS----ED------ATIKVWDYETGDFERT---LK-GHTDSVQ 154 (410)
T ss_dssp -CCCCCC-SSCSCEEEC-CSSCEEEEEECSSSSEEEEEE----SS------SCEEEEETTTCCCCEE---EC-CCSSCEE
T ss_pred ccccccC-CCceEeecc-cCCcEEEEEEcCCCCEEEEEe----CC------CeEEEEECCCCcEEEE---Ee-ccCCcEE
Confidence 3445432 445667886 789999999999999999976 45 6999999999997542 22 2456778
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
.|+|+ |+|++|++|+.|++|||||+.+++++.++. ...|.+++|+| +..|+++ +.|++|++||+++|+++++|
T Consensus 155 ~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 155 DISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp EEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEE
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECCCCcEEEEE
Confidence 99998 799999999999999999999999999886 46899999998 4566655 45899999999999999999
Q ss_pred eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCC--------------------Cc
Q 011970 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--------------------NQ 326 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd--------------------g~ 326 (474)
.+|...+..++|+ +++..+++++.|++|+|||+.++++...+.+|...|.+++|+|+ |+
T Consensus 231 ~~h~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 231 TGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp ECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred eCCCccEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 9999999999997 67788888999999999999999999999999999999999997 77
Q ss_pred EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 327 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 327 llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+|++++ |++|+|||++ |+++.++.+|..+ |++++|+|+|++|+|++. |++|+|||+.+++|+
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~g~~l~s~s~-----------D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCM 373 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCC
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEECCCCc-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceE
Confidence 899999 9999999995 9999999999988 799999999999999987 999999999999999
Q ss_pred EEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 405 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 405 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.++.+|.. .|++|+|+|+++.|||||.||+|+||+.
T Consensus 374 ~~~~~h~~----------------------------------~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 KTLNAHEH----------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECCSS----------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCC----------------------------------cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999986 8999999999999999999999999984
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=398.45 Aligned_cols=288 Identities=12% Similarity=0.167 Sum_probs=253.4
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.++..+|.| |.+.|++++|+|||+.|+++| .| .+++|||+.+++.... +. .+..++..++|+ |+
T Consensus 45 ~~~~~~l~g-H~~~v~~~~~s~d~~~l~s~s----~D------g~v~iWd~~~~~~~~~---~~-~~~~~v~~~~~s-~~ 108 (340)
T 1got_B 45 MRTRRTLRG-HLAKIYAMHWGTDSRLLLSAS----QD------GKLIIWDSYTTNKVHA---IP-LRSSWVMTCAYA-PS 108 (340)
T ss_dssp CCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------TEEEEEETTTCCEEEE---EE-CSSSCEEEEEEC-TT
T ss_pred chhheeecC-CCCceEEEEECCCCCEEEEEe----CC------CcEEEEECCCCCcceE---ee-cCCccEEEEEEC-CC
Confidence 455678887 789999999999999999976 55 6999999999886432 22 234567799998 79
Q ss_pred CeEEEEecCCCcEEEeecCCCe----EEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~----~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
|++||+|+.|++|++||+.+++ +...+. ...|..++|+|++.++++ +.|++|+|||+++|+++.+|.+|..
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~---s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEE---ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEE---ECCCcEEEEECCCCcEEEEEcCCCC
Confidence 9999999999999999998763 445554 468999999998888876 4589999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
.+.+++|+ |++..+++++.|++|+|||+++++++.++.+|...|.+++|+|+|++|++++ |++|+|||++ ++++.++
T Consensus 186 ~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 186 DVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999998 5677888899999999999999999999999999999999999999999999 9999999995 8888887
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
..+... +.|.+++|+|||++|++|+. |++|+|||+.+++++.++.+|..
T Consensus 265 ~~~~~~---~~v~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~~~~h~~----------------- 313 (340)
T 1got_B 265 SHDNII---CGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN----------------- 313 (340)
T ss_dssp CCTTCC---SCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ccCCcc---cceEEEEECCCCCEEEEECC-----------CCeEEEEEcccCcEeeEeecCCC-----------------
Confidence 643221 23799999999999999987 99999999999999999999996
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|+|+|||+.|||||.|++|+|||
T Consensus 314 -----------------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 -----------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-49 Score=411.63 Aligned_cols=311 Identities=14% Similarity=0.261 Sum_probs=275.1
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|...|..+.|+ ++.|++++.|+++++|+. +++++.++.+ |...|.+++|+|||+.|++++ .| .+++
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~-~~~~v~~v~~~~d~~~l~~~~----~d------~~i~ 287 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVNGVAFRPDGQTIASAS----DD------KTVK 287 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEec-CCCCEEEEEEcCCCCEEEEEe----CC------CEEE
Confidence 67788999998 889999999999999995 5999999997 778899999999999999876 45 6889
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLL 241 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la 241 (474)
+|+ ..+++.. .+. +|...+..++|+ |||++|++++.|++|++||+.+ ..+.++. ...|.+++|+|+ ..|+
T Consensus 288 ~w~-~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 288 LWN-RNGQLLQ---TLT-GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp EEE-TTSCEEE---EEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEe-CCCcEEE---EEe-cCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 999 4566532 122 245567789998 7999999999999999999754 5555564 568999999984 5555
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
++ +.|++|++||. +|+++.++.+|...+.+++|+ |++..|++++.|++|+||| .++++++++.+|...|.+++|
T Consensus 361 ~~---~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 361 SA---SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EE---ETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEEC-TTCCEEEEEECCSSCEEEEEE
T ss_pred EE---eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEe-CCCCEEEEecCCCCCeEEEEE
Confidence 54 44789999995 789999999999999999997 6788899999999999999 578899999999999999999
Q ss_pred cCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 322 LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+||+++|++++ |++|++||.+++++.++.+|... |.+++|+|||++||+++. |++|+||| .+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----v~~~~~spd~~~las~~~-----------d~~i~iw~-~~ 497 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWN-RN 497 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSCEEEEEET-----------TSEEEEEE-TT
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC-----------CCEEEEEc-CC
Confidence 99999999999 99999999999999999999886 799999999999999987 99999999 58
Q ss_pred CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 401 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 401 G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|++++++.+|.. .|++|+|||||++||||+.||+|+|||
T Consensus 498 ~~~~~~~~~h~~----------------------------------~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 498 GQLLQTLTGHSS----------------------------------SVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp SCEEEEEECCSS----------------------------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEeCCCC----------------------------------CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 999999999986 899999999999999999999999998
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=403.26 Aligned_cols=309 Identities=12% Similarity=0.110 Sum_probs=230.5
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCC--CccceeeeEEEEeEeccCCCCCc
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD--NFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~--d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
..+++++.+...+.|++..... ..|+..|++|+|||||++|||+|.+... | .++++|+..+|.....
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd------~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSSRTWG------GSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCC------EEEEEESSCC---CGG
T ss_pred ceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCCcccc------CeEEEEECCCCCccee
Confidence 4556667788889999875543 2488899999999999999998854321 3 5788999888876554
Q ss_pred cceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE----E--cCCcEEEEEEcCC-ceEEEEecCCCC
Q 011970 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----I--SDKHVQEIKISPG-IMLLIFNRSSSH 249 (474)
Q Consensus 177 ~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t----l--~~~~V~~vafSpg-~~la~~s~~s~D 249 (474)
......++...+..|+|+ |+|++|+ ++.|++|||||+.+++++.. . +...|.+|+|+|+ .+|+++ +.|
T Consensus 86 ~~~~~~~~~~~V~~~~~s-~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg---s~d 160 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWV-SEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG---GKD 160 (357)
T ss_dssp GCSEEEECSSCEEEEEEE-TTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE---ETT
T ss_pred EecccCCCCCCEEEEEEc-CCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE---eCC
Confidence 332222344567799999 6887665 67799999999999886532 2 2468999999985 556655 458
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--cccCCceEEEEEcCC-Cc
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYE-NQ 326 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspd-g~ 326 (474)
++|+|||+++|+++.+|++|...+.+|+|++..+..+++++.|++|+|||+++++++..+ ..|...+.+++|+|+ ++
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 999999999999999999999999999998543456778899999999999999987654 457778999999997 57
Q ss_pred EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 327 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 327 llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
+|++++ |++|+|||++ +++++++.+|... |++++|+||| ++|||++. |++|+|||+.+|++
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~~lasgs~-----------D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQN-----ITGLAYSYHSSPFLASISE-----------DCTVAVLDADFSEV 304 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTSCEE
T ss_pred eEEEeecccceeEEECCCCcEeEEEecccee-----EEEEEEcCCCCCEEEEEeC-----------CCEEEEEECCCCcE
Confidence 899998 9999999995 9999999999987 7999999998 68999886 99999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEEcCCCcEEEccC
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtVklWd~ 474 (474)
++++ +|++ .|++|+||| |+++|||||.||+|++|+.
T Consensus 305 ~~~~-~H~~----------------------------------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 305 FRDL-SHRD----------------------------------FVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEC-CCSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred eEEC-CCCC----------------------------------CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 9876 8986 899999999 8999999999999999984
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=390.96 Aligned_cols=288 Identities=11% Similarity=0.170 Sum_probs=250.0
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+...+|.| |.+.|++++|+|||+.|+|+| .| .+++|||..+++.... +. .+..++..++|+ |+|
T Consensus 55 ~~~~~l~g-H~~~V~~~~~s~d~~~l~s~s----~D------g~v~vWd~~~~~~~~~---~~-~~~~~v~~~~~s-p~g 118 (354)
T 2pbi_B 55 KTRRTLKG-HGNKVLCMDWCKDKRRIVSSS----QD------GKVIVWDSFTTNKEHA---VT-MPCTWVMACAYA-PSG 118 (354)
T ss_dssp CEEEEEEC-CSSCEEEEEECTTSSEEEEEE----TT------SEEEEEETTTCCEEEE---EE-CSSSCCCEEEEC-TTS
T ss_pred EEEEEecC-CCCeEEEEEECCCCCEEEEEe----CC------CeEEEEECCCCCcceE---Ee-cCCCCEEEEEEC-CCC
Confidence 45668887 889999999999999999976 55 6999999988886332 22 234577899998 799
Q ss_pred eEEEEecCCCcEEEeecCCC------eEEE--EEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 199 KVLTYSAQDSIYKVFDLKNY------TMLY--SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg------~~l~--tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
++||+++.|+++++|++... .... ..+...|..++|+| +..|+++ +.|++|+|||+++|+++++|.+|
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEEeCCCCeEEEEEcCC
Confidence 99999999999999998643 1223 34567899999998 4566665 45899999999999999999999
Q ss_pred CcceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE
Q 011970 270 LHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 346 (474)
Q Consensus 270 ~~~v~~V~F~~~-~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll 346 (474)
...+..++|.+. ++..+++++.|++|++||++++++++++.+|...|.+++|+|++++|+|++ |++|+|||++ ++++
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999753 356788899999999999999999999999999999999999999999999 9999999996 8888
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
..+..+... ..+.+++|+|||++|++++. |++|+|||+.+|+++.++.+|..
T Consensus 276 ~~~~~~~~~---~~~~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~l~~h~~-------------- 327 (354)
T 2pbi_B 276 AIYSKESII---FGASSVDFSLSGRLLFAGYN-----------DYTINVWDVLKGSRVSILFGHEN-------------- 327 (354)
T ss_dssp EEECCTTCC---SCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCSEEEEECCCSS--------------
T ss_pred EEEcCCCcc---cceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCceEEEEECCCC--------------
Confidence 888765432 13789999999999999987 99999999999999999999986
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|+|||||+.||||+.|++|+||+
T Consensus 328 --------------------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 --------------------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --------------------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=396.54 Aligned_cols=299 Identities=12% Similarity=0.113 Sum_probs=230.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC--CCCCccceeeecccc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLK 186 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~~~~~~~lf~~~~~~ 186 (474)
..|.|++..+... .++..|.+++|||||+.|+++| ++ ++++|...+|..... ....+......++..
T Consensus 15 ~~r~w~~~~~~~~-----~~~~~v~~~~fs~dG~~l~~~s----d~--~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (344)
T 4gqb_B 15 AAREWNLPPNAPA-----CMERQLEAARYRSDGALLLGAS----SL--SGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA 83 (344)
T ss_dssp --------CCSCS-----SCCSEEEEEEECTTSCEEEEEE----CC--SSSCCCEEEEEESSGGGTTCGGGCSEEEEESS
T ss_pred cccccCCCCCCcc-----cccCCEEEEEECCCCCEEEEEe----CC--ceEEeeceeeeeccccccCCcceeeeeeccCC
Confidence 3577887755432 2556799999999999998865 33 455565555544221 111111111112234
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE------cCCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCC
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl------~~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~t 259 (474)
.+..|+|+ ||+ .|++|+.|++|||||+.+++++.++ |.+.|.+|+|||+ .+|+++ +.|++|+|||+++
T Consensus 84 ~v~~~~~s-~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iwd~~~ 158 (344)
T 4gqb_B 84 GVADLTWV-GER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVWDLAQ 158 (344)
T ss_dssp CEEEEEEE-TTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTT
T ss_pred CEEEEEEe-CCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEEECCC
Confidence 56789999 677 5778999999999999999865433 3468999999985 555554 5589999999999
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcC-CCcEEEEEc-CCc
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY-ENQLFLTFR-NRT 335 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fsp-dg~llaS~s-D~t 335 (474)
|+++++|.+|...|..++|++.....+++++.|++|+|||+++++++..+. .|...+.+++|+| ++++|++++ |++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999999999999999985433466778999999999999999988764 4666899999998 577899998 999
Q ss_pred EEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 336 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 336 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
|+|||++ |+++.+|++|... |++|+|+||| ++|||||. |++|+|||+.+|+++ ++.+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~g~~~lasgs~-----------D~~i~vwd~~~~~~~-~~~~H~~- 300 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQC-----VTGLVFSPHSVPFLASLSE-----------DCSLAVLDSSLSELF-RSQAHRD- 300 (344)
T ss_dssp EEEEESCC--CCEEEECCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTCCEEE-EECCCSS-
T ss_pred EEEEECCCCcEEEEEcCCCCC-----EEEEEEccCCCeEEEEEeC-----------CCeEEEEECCCCcEE-EEcCCCC-
Confidence 9999995 9999999999987 7999999998 68999987 999999999999876 5789986
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcCCCcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~DgtVklWd~ 474 (474)
.|++|+|||||+ .|+|||.|++|++|+.
T Consensus 301 ---------------------------------~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 ---------------------------------FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ---------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ---------------------------------CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999999997 5789999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-50 Score=403.04 Aligned_cols=304 Identities=12% Similarity=0.153 Sum_probs=259.0
Q ss_pred CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc
Q 011970 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~ 186 (474)
+.++..|+..+.++.++|.| |.+.|++|+|+|+|+.|+|+| .| ++++|||+.+++.... +. .|..
T Consensus 45 ~~~~~~~~~~~~~~~~~l~g-H~~~V~~~~~sp~~~~l~s~s----~D------~~v~iWd~~~~~~~~~---~~-~h~~ 109 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQG-HSGKVYSLDWTPEKNWIVSAS----QD------GRLIVWNALTSQKTHA---IK-LHCP 109 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECC-CSSCEEEEEECTTSSCEEEEE----TT------SEEEEEETTTTEEEEE---EE-CCCT
T ss_pred cccccccccceeEEeecccc-cccEEEEEEEcCCCCEEEEEe----CC------CeEEEEECCCCccceE---Ee-cCCC
Confidence 34555688788889999997 889999999999999999976 55 6999999988886432 22 2456
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-------EEEEE--cCCcEEEEEEcC--CceEEEEecCCCCccEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSI--SDKHVQEIKISP--GIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-------~l~tl--~~~~V~~vafSp--g~~la~~s~~s~D~tIkLW 255 (474)
++..++|+ |||++||+|+.|++|+|||+.+.. +..++ +...|.+++|+| +..|+++ +.|++|+||
T Consensus 110 ~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~---s~D~~i~~w 185 (380)
T 3iz6_a 110 WVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG---SGDQTCVLW 185 (380)
T ss_dssp TCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE---CTTSCEEEE
T ss_pred CEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE---CCCCcEEEE
Confidence 77799998 799999999999999999987532 22333 346799999997 3457765 568999999
Q ss_pred ecCCCeEEEEE-----eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 256 SIEDGTVLKVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 256 di~tG~~L~tl-----~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
|+++|+++.++ .+|...+.+++|.++++..+++++.|++|+|||++ ++++++++.+|...|.+++|+|+|++|+
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE
Confidence 99999999998 57888999999987778888889999999999998 5688899999999999999999999999
Q ss_pred EEc-CCcEEEEeCC-CcEEEEeccCCCCcC--CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFEDHLLWHP--DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~gH~~~~~--~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
|++ |++|+|||++ |++++++..|..... ...|.+++|+|+|++|++|+. ||+|+|||+.+++++.
T Consensus 266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------NGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------TSCEEEEETTTCCEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------CCCEEEEECCCCceEE
Confidence 999 9999999995 999999987643210 123689999999999999876 9999999999999999
Q ss_pred Ee----cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 406 KI----NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 406 tl----~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
++ .+|.. .|++|+|||||+.|||||.|++|+||+.
T Consensus 335 ~~~~~~~~h~~----------------------------------~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 335 NLGTLQNSHEG----------------------------------RISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp EECCSCSSCCC----------------------------------CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEecccCCCCC----------------------------------ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 98 67775 8999999999999999999999999984
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=379.95 Aligned_cols=285 Identities=12% Similarity=0.097 Sum_probs=244.7
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+..++|.+ |.+.|.+|+|+|||+.|++++ .| .+++||++.++++... +. .+...+..++|+ |+|
T Consensus 4 ~~~~~~~~-h~~~V~~~~fsp~~~~l~s~~----~d------g~v~lWd~~~~~~~~~---~~-~~~~~v~~~~~~-~~~ 67 (304)
T 2ynn_A 4 DIKKTFSN-RSDRVKGIDFHPTEPWVLTTL----YS------GRVELWNYETQVEVRS---IQ-VTETPVRAGKFI-ARK 67 (304)
T ss_dssp CCEEEEEE-ECSCEEEEEECSSSSEEEEEE----TT------SEEEEEETTTTEEEEE---EE-CCSSCEEEEEEE-GGG
T ss_pred eeEEeecC-CCCceEEEEECCCCCEEEEEc----CC------CcEEEEECCCCceeEE---ee-ccCCcEEEEEEe-CCC
Confidence 34567887 778899999999999999976 55 6999999998876432 22 133456789998 799
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCC-eEEEEEeecCccee
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 274 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~ 274 (474)
++|++|+.|++|+|||+++++++.++. .+.|.+|+|+|+ .+|+++ +.|++|+|||++++ .+.+++.+|.+.|.
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEE---CCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence 999999999999999999999998886 467999999985 555554 55899999999988 56688999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-cccCCceEEEEEcC--CCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fsp--dg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
+++|+|.++..|++++.|++|+|||++++++...+ .+|...+..+.|+| ++++|+|++ |++|+|||++ ++++.+|
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 99998656778888999999999999988876554 46767889999975 889999999 9999999995 9999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
++|... |..++|+|++++|||++. ||+|+|||+.++++++++.+|..
T Consensus 225 ~~h~~~-----v~~~~~~p~~~~l~s~s~-----------Dg~i~iWd~~~~~~~~~~~~~~~----------------- 271 (304)
T 2ynn_A 225 EGHMSN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE----------------- 271 (304)
T ss_dssp ECCSSC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEECCSSS-----------------
T ss_pred CCCCCC-----EEEEEECCCCCEEEEEcC-----------CCeEEEEECCCCceeeeccCCCc-----------------
Confidence 999987 789999999999999987 99999999999999999999975
Q ss_pred cccccccccccccccccCEEEEEEcCCCC--EEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~--~LaSgs~DgtVklWd 473 (474)
.|++++|+|+|. .||+|+.||.+ +|+
T Consensus 272 -----------------~~~~~~~~~~~~~~~~asg~~~g~~-~~~ 299 (304)
T 2ynn_A 272 -----------------RSWCIATHPTGRKNYIASGFDNGFT-VLS 299 (304)
T ss_dssp -----------------SEEEEEECTTCGGGCEEEEETTEEE-EEE
T ss_pred -----------------cEEEEEECCCCCceEEEEecCCceE-EEE
Confidence 899999999986 58999888754 553
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=374.13 Aligned_cols=296 Identities=10% Similarity=0.124 Sum_probs=246.0
Q ss_pred ceeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~ 196 (474)
++..+|.| |.+.|.+|+|+|++ ++|+|+| .| +++++|++...+...+.++... +|...+..++|+ |
T Consensus 8 ~l~~~l~g-H~~~V~~l~~~~~~~~~l~s~s----~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~ 75 (319)
T 3frx_A 8 VLRGTLEG-HNGWVTSLATSAGQPNLLLSAS----RD------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-A 75 (319)
T ss_dssp EEEEEECC-CSSCEEEEEECSSCTTEEEEEE----TT------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-T
T ss_pred EEEEEEcc-ccceEEEEEccCCCccEEEEec----CC------ccEEEecCCCCCccccccceEEeCCcccEEEEEEC-C
Confidence 44568887 88999999999976 7899976 55 6999999865443222222221 356677789998 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
||++|++|+.|++|||||+.+++++.++. ...|.+++|+|+ .+++++ +.|++|+|||++ ++++.++.+|...+
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd~~-~~~~~~~~~h~~~v 151 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWTIK-GQCLATLLGHNDWV 151 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEECC-CCeEEEEeccCCcE
Confidence 99999999999999999999999998886 468999999984 556655 558999999985 68999999999999
Q ss_pred eEEEEEec-----CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE
Q 011970 274 KKVDFIEQ-----FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 346 (474)
Q Consensus 274 ~~V~F~~~-----~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll 346 (474)
..+.|.+. ++..+++++.|++|++||++++++...+.+|...|.+++|+|+|++|+|++ |++|+|||+. ++++
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999752 234788889999999999999999999999999999999999999999999 9999999995 9999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
.++..|.. |.+++|+|||++|++++ ++.|++|++.++.++..+..+... .
T Consensus 232 ~~~~~~~~------v~~~~~sp~~~~la~~~------------~~~i~v~~~~~~~~~~~~~~~~~~-~----------- 281 (319)
T 3frx_A 232 YTLSAQDE------VFSLAFSPNRYWLAAAT------------ATGIKVFSLDPQYLVDDLRPEFAG-Y----------- 281 (319)
T ss_dssp EEEECCSC------EEEEEECSSSSEEEEEE------------TTEEEEEEETTEEEEEEECCCCTT-C-----------
T ss_pred EEecCCCc------EEEEEEcCCCCEEEEEc------------CCCcEEEEeCcCeeeeccCccccc-c-----------
Confidence 99987643 78999999999999876 567999999999999988765420 0
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
...+-..|.+|+|||||++|+||+.||+|+|||.
T Consensus 282 --------------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 282 --------------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp --------------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --------------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 0001127899999999999999999999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=380.57 Aligned_cols=292 Identities=13% Similarity=0.145 Sum_probs=242.4
Q ss_pred ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC
Q 011970 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 117 tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
.-+++.+|.+++...|++|+|||||+.||++| .| ++++||++..++.... ..+..+|...+..|+|+ |
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~----~D------~~i~iw~~~~~~~~~~-~~~~~~h~~~v~~~~~s-p 71 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCG----GD------RRIRIWGTEGDSWICK-SVLSEGHQRTVRKVAWS-P 71 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEE----TT------SCEEEEEEETTEEEEE-EEECSSCSSCEEEEEEC-T
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEc----CC------CeEEEEEcCCCcceee-eeeccccCCcEEEEEEC-C
Confidence 34678899985544899999999999999976 55 6999999987764211 11222356678899998 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC---eEEEEEee
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYH 268 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG---~~L~tl~~ 268 (474)
||++||+|+.|++|+|||+.++. ++.++. ...|.+|+|+| +.+||++ +.|++|+|||+.++ +++.++.+
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999999999999998774 677776 46899999998 5556655 45899999999877 56788899
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc--eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-C--
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R-- 342 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~-- 342 (474)
|...+..++|+ |++..|++++.|++|+|||+++++ +..++.+|...|++++|+|+|++|+|++ |++|+|||. .
T Consensus 149 h~~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 149 HTQDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227 (345)
T ss_dssp CCSCEEEEEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred cCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence 99999999998 678889999999999999999886 5578899999999999999999999999 999999995 1
Q ss_pred -------------CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe------
Q 011970 343 -------------GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK------ 402 (474)
Q Consensus 343 -------------G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~------ 402 (474)
++|+.++.+ |... |++++|+|++.+||++|. |++|+||++.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~-----------d~~i~vw~~~~~~~~~~~~ 291 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGFHSRT-----IYDIAWCQLTGALATACG-----------DDAIRVFQEDPNSDPQQPT 291 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSSCSSC-----EEEEEECTTTCCEEEEET-----------TSCEEEEEECTTSCTTSCC
T ss_pred CCccceeeccCCccceeEEecCCCCCc-----EEEEEEecCCCEEEEEeC-----------CCeEEEEEeCCCCCcceee
Confidence 256778887 6655 799999999999999987 9999999987653
Q ss_pred ---EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 403 ---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 403 ---cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
....+.+|.. .|++|+|+|++ ..|||||.||+|+||+.
T Consensus 292 ~~~~~~~~~~h~~----------------------------------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 292 FSLTAHLHQAHSQ----------------------------------DVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEEEEEETTSSSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEEEeeecccccC----------------------------------cEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 1233467774 89999999998 49999999999999973
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=392.07 Aligned_cols=278 Identities=10% Similarity=0.145 Sum_probs=248.6
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.|+.+|..+.|+ +.+||+++.||+|++||..+|++++++.+ |.+.|.+|+|+|+|+.|+++| .| .++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs----~D------~~i 174 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS----AD------MTI 174 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe----CC------CeE
Confidence 388999999999 89999999999999999999999999997 778999999999999999976 45 588
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-ML 240 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~l 240 (474)
+|||+..+++...+ . +|...+.+|+|+ |+|++|++|+.|++|++||+.+++++.++. ...|..++|+|++ .+
T Consensus 175 ~iwd~~~~~~~~~~--~--~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 175 KLWDFQGFECIRTM--H--GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp CEEETTSSCEEECC--C--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEeCCCCceeEEE--c--CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 99999888874422 1 234567799998 799999999999999999999999999886 4589999999855 55
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC-------------------CCeEEEEeCCCcEEEEECC
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------------NEKLLVKQENENLQILDVR 301 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~-------------------~~~ll~~~~D~tIkIWDv~ 301 (474)
+++ +.|++|+|||+.+++++.+|.+|.+.+.+++|+|.. +..|++++.|++|+|||++
T Consensus 250 ~s~---s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 250 ASC---SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEE---ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEE---cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 554 458999999999999999999999999999998531 4578889999999999999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+++++.++.+|...|.+++|+|+|++|+|++ |++|+|||+. ++++.++.+|... |.+++|+|++++|||||.
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~sgs~- 400 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV- 400 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET-
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999999999999 9999999995 9999999999987 799999999999999987
Q ss_pred CCccccccCCCCeEEEEeC
Q 011970 380 EPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi 398 (474)
|++|+|||+
T Consensus 401 ----------D~~i~vW~~ 409 (410)
T 1vyh_C 401 ----------DQTVKVWEC 409 (410)
T ss_dssp ----------TSEEEEEC-
T ss_pred ----------CCcEEEEeC
Confidence 999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=383.96 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=243.4
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee--------------cccc
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--------------ESLK 186 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~--------------~~~~ 186 (474)
+.++. |...|.+++|||||++||+++ + .+++||++.+|++...+..... .+-.
T Consensus 58 ~~~~~--h~~~V~~v~fspdg~~la~g~----~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
T 1erj_A 58 HKSLD--HTSVVCCVKFSNDGEYLATGC----N-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 124 (393)
T ss_dssp EEEEE--CSSCCCEEEECTTSSEEEEEC----B-------SCEEEEETTTCCEEEEECC-----------------CCCC
T ss_pred EEecC--CCCEEEEEEECCCCCEEEEEc----C-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCce
Confidence 34453 778999999999999999843 3 4789999999886332111100 0112
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
++.+|+|+ |||++||+|+.|++|+|||+.+++++.++. ...|.+++|+| +..|+++ +.|++|+|||+++|+++
T Consensus 125 ~v~~v~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 125 YIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp BEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEE
T ss_pred eEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEEEEECCCCeeE
Confidence 46789998 799999999999999999999999998886 45799999998 5566655 55899999999999999
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-------cccCCceEEEEEcCCCcEEEEEc-CCc
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR-NRT 335 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-------~~h~~~v~sv~Fspdg~llaS~s-D~t 335 (474)
.++.++ ..+..++|++.++..+++++.|++|+|||++++++++.+ .+|...|.+++|+|+|++|++++ |++
T Consensus 201 ~~~~~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 201 LTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 998754 678999998667888888999999999999999988776 67999999999999999999999 999
Q ss_pred EEEEeCC-------------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 336 VAVWNFR-------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 336 IklWd~~-------------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
|+|||++ +.|..++.+|..+ |.+++|+|+|++|+||+. |++|+|||+.+|+
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~sgs~-----------D~~v~iwd~~~~~ 343 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK-----------DRGVLFWDKKSGN 343 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-----------TSEEEEEETTTCC
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCe
Confidence 9999984 4577899999987 789999999999999987 9999999999999
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC------CCCEEEEEcCCCcEEEcc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE------ERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp------Dg~~LaSgs~DgtVklWd 473 (474)
++.++++|.. .|++++|+| +++.||||+.||+|+||+
T Consensus 344 ~~~~l~~h~~----------------------------------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 344 PLLMLQGHRN----------------------------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEEECCSS----------------------------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEECCCCC----------------------------------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 9999999986 899999986 789999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=374.97 Aligned_cols=317 Identities=11% Similarity=0.071 Sum_probs=270.9
Q ss_pred cccEEEEEee--cc-EEEEeeCCCeEEeeec----cccc------eeeEeec---------CCCceEEEEEEeeCCCEEE
Q 011970 88 RTKVIEIVAA--RD-IVFALAHSGVCAAFSR----ETNR------RICFLNV---------SPDEVIRSLFYNKNNDSLI 145 (474)
Q Consensus 88 ~~~V~~i~~s--~~-~las~s~dgtiklW~~----~tg~------~l~~l~g---------~~~~~i~sv~fspdg~~Li 145 (474)
..+|..+.|+ ++ +||+++.||+|++|++ .+|+ ....+.. +|...|.+++|+|+|+.|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 3445555555 77 9999999999999999 9898 5665553 1567899999999999999
Q ss_pred EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 146 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 146 s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
+++ .| ..++||+ .+|+.... +. .+...+..++|+ |+|++|++++.|++|++||+.+++++..+.
T Consensus 125 ~~~----~d------g~i~i~~-~~~~~~~~---~~-~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 125 TGV----EN------GELRLWN-KTGALLNV---LN-FHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EEE----TT------SCEEEEE-TTSCEEEE---EC-CCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEe----CC------CeEEEEe-CCCCeeee---cc-CCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 976 44 5899999 66765331 22 244567789998 799999999999999999999999998886
Q ss_pred C--Cc---------------EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 226 D--KH---------------VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 226 ~--~~---------------V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
. .. |.+++|+|++.++++ +.|+.|++||+++++++.++..|...+..++|+ |++..|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~ 264 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP---GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLLS 264 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEE---CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEE---cCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEEE
Confidence 3 23 889999998888876 457999999999999999999999999999998 56788888
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
++.|++|+|||+++++++..+.+|...+.+++|+|++ +|++++ |++|++||++ ++++..+.+|... |.+++|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~ 338 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGRI 338 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEEE
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEEE
Confidence 9999999999999999999999999999999999999 888888 9999999995 9999999999876 789999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--------------------EEEEecCCCCCCCCccccCCCCCC
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------------------CLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~--------------------cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
+|||++||+++. ||+|+|||+.+++ ++.++.+|..
T Consensus 339 s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 393 (425)
T 1r5m_A 339 SQDGQKYAVAFM-----------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD-------------- 393 (425)
T ss_dssp CTTSSEEEEEET-----------TSCEEEEECHHHHC--------------CEECCEEEEECCTTC--------------
T ss_pred cCCCCEEEEEEC-----------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc--------------
Confidence 999999999986 9999999999999 8999999853
Q ss_pred cccccccccccccccccccc-CEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 427 KSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~-~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
. .|++++|+|||+.||+|+.||+|++|+.
T Consensus 394 -------------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 394 -------------------NDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp -------------------CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred -------------------CCceEEEEccCCCceEEEEecCceEEEEee
Confidence 1 6999999999999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=372.62 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=242.4
Q ss_pred ccccEEEEEee------ccEEEEeeCCCeEEeeeccccce--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s------~~~las~s~dgtiklW~~~tg~~--l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|.+|.|+ +++||+++.|++||+|+..+++. ..++.| |...|.+++|+|++..|+++| .|
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s----~D---- 101 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSS----LD---- 101 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEE----TT----
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEe----CC----
Confidence 66777777775 46899999999999999987764 446776 788999999999999999976 55
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP 236 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp 236 (474)
++++|||+.+|++... +.. +...+..++|+ |||++|++++.|++|++||++++++.+++. ...|.+++|+|
T Consensus 102 --~~i~lWd~~~~~~~~~---~~~-~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 102 --AHIRLWDLENGKQIKS---IDA-GPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp --SEEEEEETTTTEEEEE---EEC-CTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT
T ss_pred --CcEEEEECCCCCEEEE---EeC-CCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC
Confidence 6999999999986432 222 23345589998 799999999999999999999999988886 46799999998
Q ss_pred C-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCc
Q 011970 237 G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 315 (474)
Q Consensus 237 g-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~ 315 (474)
+ .+||++ +.|++|+|||+++|+++.++++|...+.+++|+ |++..|++++.|++|+|||+++++++.++.+|...
T Consensus 175 dg~~lasg---~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 175 DGKYLASG---AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp TSSEEEEE---ETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCEEEEE---cCCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 4 555554 458999999999999999999999999999998 67888888999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 316 PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|.+++|+|+|++|+|++ |++|+|||+. ++++++|.+|... |++++|+|||++|+|++. |++|
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~s~~~-----------d~~i 314 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGNGSKIVSVGD-----------DQEI 314 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCCE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCCCCEEEEEeC-----------CCeE
Confidence 99999999999999999 9999999995 9999999999987 799999999999999987 9999
Q ss_pred EEEeC
Q 011970 394 NVSSI 398 (474)
Q Consensus 394 klWdi 398 (474)
+|||.
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=368.71 Aligned_cols=277 Identities=9% Similarity=0.144 Sum_probs=239.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|.++.|+ +++||+++.||+|++||..+++++.++.+ |...|.+++|+|+|+.|++++ .| ..++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~----~d------~~v~ 122 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG----LD------NICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE----TT------CEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe----CC------CeEE
Confidence 56677777777 88999999999999999999999999996 778899999999999999976 55 6999
Q ss_pred EeEeccCCCCCccc-eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eE
Q 011970 165 IEYIRRGKPDSGFA-LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-ML 240 (474)
Q Consensus 165 iw~i~~G~~~~~~~-lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~l 240 (474)
||++..++...... .+. +|...+..+.|+ ++++ |++++.|++|+|||+.+++++.++. ...|.+++|+|++ .+
T Consensus 123 iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-GHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-CCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECccCCCcceeEEEec-CCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 99997765321111 111 345667789998 6776 7889999999999999999999886 4579999999855 45
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc--cCCceEE
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSA 318 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~--h~~~v~s 318 (474)
+++ +.|++|+|||+++|+++.+|.+|...+.+|+|+ |++..|++++.|++|+|||+++++++..+.. +...|.+
T Consensus 200 ~sg---~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 200 VSG---ACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEE---ETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEE---eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 554 458999999999999999999999999999998 6788899999999999999999998877653 3357999
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
++|+|+|++|++++ |++|+|||+. ++++.+|.+|... |.+++|+|||++||||+. |++|+||
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~s~-----------D~~i~iW 339 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIW 339 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-----EEEEEEcCCCCEEEEEcC-----------CccEEec
Confidence 99999999999999 9999999994 9999999999987 799999999999999987 9999999
Q ss_pred e
Q 011970 397 S 397 (474)
Q Consensus 397 d 397 (474)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=363.38 Aligned_cols=289 Identities=13% Similarity=0.129 Sum_probs=243.9
Q ss_pred cccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC
Q 011970 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (474)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~ 142 (474)
+.++..|..|..++.++.|.|+ +++||+++.||+|++||.+++++++++++ |...|+++.|+|+|+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKN 68 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-------------SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT
T ss_pred ceeEEeecCCCCceEEEEECCC-------------CCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCC
Confidence 4455666666665555555555 99999999999999999999999999997 778899999999999
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC-eEE
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML 221 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg-~~l 221 (474)
.|+++| .| .+++|||+.+|++... +. .|...+.+|+|+ |+|++|++|+.|++|||||+.++ .+.
T Consensus 69 ~l~s~s----~d------~~i~vwd~~~~~~~~~---~~-~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 69 WIIVGS----DD------FRIRVFNYNTGEKVVD---FE-AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp EEEEEE----TT------SEEEEEETTTCCEEEE---EE-CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred EEEEEC----CC------CEEEEEECCCCcEEEE---Ee-CCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchh
Confidence 999976 56 6999999999987432 22 255677899998 79999999999999999999987 455
Q ss_pred EEEc--CCcEEEEEEcC-C-ceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEe-cCCCeEEEEeCCCcE
Q 011970 222 YSIS--DKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIE-QFNEKLLVKQENENL 295 (474)
Q Consensus 222 ~tl~--~~~V~~vafSp-g-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~-~~~~~ll~~~~D~tI 295 (474)
.++. ...|.+++|+| + ..||++ +.|++|+|||+.++++..++. +|...+..++|.+ +++..|++++.|++|
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sg---s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i 210 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEE---ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEE---eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE
Confidence 6665 46799999998 4 466665 558999999999988877776 5567889999975 345678889999999
Q ss_pred EEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC--
Q 011970 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-- 371 (474)
Q Consensus 296 kIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-- 371 (474)
+|||+++++++.++.+|...|.+++|+|++++|+|++ |++|+|||.+ ++++++|..|... +++++|+|+|.
T Consensus 211 ~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKN 285 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSS-----EEEEEECTTCGGG
T ss_pred EEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCcc-----EEEEEECCCCCce
Confidence 9999999999999999999999999999999999999 9999999995 9999999999876 78999999985
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+||+|+ |..+.+|++.+
T Consensus 286 ~~asg~------------~~g~~~~~~~~ 302 (304)
T 2ynn_A 286 YIASGF------------DNGFTVLSLGN 302 (304)
T ss_dssp CEEEEE------------TTEEEEEECC-
T ss_pred EEEEec------------CCceEEEEecc
Confidence 688876 56677998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=355.80 Aligned_cols=290 Identities=14% Similarity=0.185 Sum_probs=249.7
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.+...+|.+ |.+.|.+++|+|+|+.|++++ .| ++++||++.+|++... +. +|...+..++|+ |+
T Consensus 13 ~~~~~~~~g-h~~~v~~~~~s~~~~~l~s~~----~d------g~i~iw~~~~~~~~~~---~~-~h~~~v~~~~~~-~~ 76 (312)
T 4ery_A 13 YALKFTLAG-HTKAVSSVKFSPNGEWLASSS----AD------KLIKIWGAYDGKFEKT---IS-GHKLGISDVAWS-SD 76 (312)
T ss_dssp CEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCEEEEETTTCCEEEE---EC-CCSSCEEEEEEC-TT
T ss_pred ceeEEEEcc-cCCcEEEEEECCCCCEEEEee----CC------CeEEEEeCCCcccchh---hc-cCCCceEEEEEc-CC
Confidence 345567786 788999999999999999976 45 5899999998886432 22 244567789998 79
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCccee
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
|++|++++.|++|+|||+.+++++.++. ...|..++|+| +..++++ +.|++|++||++++++++++..|...+.
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence 9999999999999999999999998886 46799999998 5556555 4589999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 351 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g 351 (474)
.++|+ |++..+++++.|++|++||+++++++..+ ..|...+..++|+|++++|++++ |++|++||++ ++++.++.+
T Consensus 154 ~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 154 AVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp EEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 99997 67788888999999999999999988765 45667889999999999999999 9999999995 999999999
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|..... + +......+++++|++|+. ||+|+|||+.++++++++++|..
T Consensus 233 ~~~~~~-~-~~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h~~------------------- 280 (312)
T 4ery_A 233 HKNEKY-C-IFANFSVTGGKWIVSGSE-----------DNLVYIWNLQTKEIVQKLQGHTD------------------- 280 (312)
T ss_dssp SCCSSS-C-CCEEEECSSSCEEEECCT-----------TSCEEEEETTTCCEEEEECCCSS-------------------
T ss_pred cCCceE-E-EEEEEEeCCCcEEEEECC-----------CCEEEEEECCCchhhhhhhccCC-------------------
Confidence 987532 1 234445678999999876 99999999999999999999986
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEc--CCCcEEEccC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 474 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs--~DgtVklWd~ 474 (474)
.|.+++|+|+++.|+|++ .|++|++|+.
T Consensus 281 ---------------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 281 ---------------VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ---------------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ---------------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999997 6999999973
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=367.49 Aligned_cols=289 Identities=19% Similarity=0.178 Sum_probs=234.7
Q ss_pred ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeec-cccCceEEEEeC
Q 011970 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDD 195 (474)
Q Consensus 117 tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~ 195 (474)
+.+++++|.+ |.+.|++++|+|+ .||++| .| ++++||++..++... ...+... |...+.+|+|+
T Consensus 3 ~~~~~~~~~~-h~~~v~~~~~s~~--~las~~----~D------~~i~lw~~~~~~~~~-~~~~~~~~h~~~v~~v~~s- 67 (330)
T 2hes_X 3 SINLIKSLKL-YKEKIWSFDFSQG--ILATGS----TD------RKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAWR- 67 (330)
T ss_dssp CCEEEEEEEC-CSSCEEEEEEETT--EEEEEE----SS------SCEEEEECSSSCCEE-EEEECTTCCCSCEEEEEEC-
T ss_pred ccccceeecc-CCCceeeeccCCC--EEEEEc----CC------CEEEEEEecCCCeEE-EEEEecCCccCCEEEEEEC-
Confidence 4678889997 8899999999997 888876 55 699999998765311 1122112 55668899998
Q ss_pred CCCeEEEEecCCCcEEEeecC-------CCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecC-C---Ce
Q 011970 196 VNGKVLTYSAQDSIYKVFDLK-------NYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE-D---GT 261 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~-------tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~-t---G~ 261 (474)
|+|++||+|+.|++|||||+. +++++.++. ...|.+|+||| |.+||++ +.|++|+|||+. . .+
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEEECCTTCCCCE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEEeccCCCCCeE
Confidence 799999999999999999984 345677775 46899999998 4556655 558999999994 2 37
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--ceEEeccccCCceEEEEEcCC--CcEEEEEc-CCcE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTV 336 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg--~~~~~l~~h~~~v~sv~Fspd--g~llaS~s-D~tI 336 (474)
++.++.+|...|..|+|+ |++..|++++.|++|+|||+.++ +++.++.+|...|++++|+|+ +.+|+|++ |++|
T Consensus 145 ~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp EEEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred EEEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 889999999999999998 57888888999999999999877 788999999999999999999 78999999 9999
Q ss_pred EEEeCC-C--------cEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--EE
Q 011970 337 AVWNFR-G--------ELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CL 404 (474)
Q Consensus 337 klWd~~-G--------~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~--cl 404 (474)
+|||+. + +++.++.+ |..+ |.+++|+|++ +|||++. ||+|+|||+.+|+ ++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~~-~l~s~~~-----------dg~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQ-----VYNVAWGFNG-LIASVGA-----------DGVLAVYEEVDGEWKVF 286 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSC-----EEEEEECTTS-CEEEEET-----------TSCEEEEEEETTEEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccc-----eEEEEEcCCC-EEEEEeC-----------CCEEEEEEcCCCceEEE
Confidence 999985 4 56778876 8776 7999999776 7888876 9999999998884 44
Q ss_pred EE-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC--CCCEEEEEcCCCcEEEccC
Q 011970 405 AK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 405 ~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp--Dg~~LaSgs~DgtVklWd~ 474 (474)
.+ +.+|.. ..|++|+|+| ||+.||||+.||+|+|||.
T Consensus 287 ~~~~~~h~~---------------------------------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 287 AKRALCHGV---------------------------------YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEESCTTTT---------------------------------SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ecccccccc---------------------------------ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 44 367763 1699999999 7999999999999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-48 Score=383.02 Aligned_cols=345 Identities=14% Similarity=0.108 Sum_probs=260.6
Q ss_pred EEEEEee--cc-EEEEe----------eCCCeEEeeeccccc---eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC
Q 011970 91 VIEIVAA--RD-IVFAL----------AHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (474)
Q Consensus 91 V~~i~~s--~~-~las~----------s~dgtiklW~~~tg~---~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d 154 (474)
|..+.|+ ++ +||++ +.||++++|++.+++ ++..+. |...|.+++|+|+|+.|++++ .|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~----~d 88 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ--VDSKFNDLDWSHNNKIIAGAL----DN 88 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC--CSSCEEEEEECSSSSCEEEEE----SS
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe--cCCceEEEEECCCCCeEEEEc----cC
Confidence 3334444 55 88888 899999999999886 555553 678899999999999999976 45
Q ss_pred ccceeeeEEEEeEeccC----CCCCccceeeeccccCceEEEEeCCC-CeEEEEecCCCcEEEeecCCCe------EEEE
Q 011970 155 FSSLKCRSTKIEYIRRG----KPDSGFALFESESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT------MLYS 223 (474)
Q Consensus 155 ~s~Lk~~~~~iw~i~~G----~~~~~~~lf~~~~~~~~~~V~Fs~~n-Gk~LaS~s~D~tiKlWdl~tg~------~l~t 223 (474)
..++||++... ++.. .+. .|...+..++|+ |+ +++|++++.|++|+|||+.+++ ....
T Consensus 89 ------g~v~vw~~~~~~~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 89 ------GSLELYSTNEANNAINSMA---RFS-NHSSSVKTVKFN-AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp ------SCEEEECCSSTTSCCCEEE---ECC-CSSSCCCEEEEC-SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred ------CeEEEeecccccccccchh---hcc-CCccceEEEEEc-CCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 68999998772 2211 111 245567799998 56 8999999999999999999887 4443
Q ss_pred E-----cCCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeec------CcceeEEEEEecCC-CeEEEE
Q 011970 224 I-----SDKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFN-EKLLVK 289 (474)
Q Consensus 224 l-----~~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~~~v~~V~F~~~~~-~~ll~~ 289 (474)
+ +...|.+++|+|+ .+++++ +.|++|++||+++++++.++..| ...+..++|++ ++ ..++++
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 233 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASA---GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP-KNSTRVATA 233 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEE---SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS-SCTTEEEEE
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEE---cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC-CCCCEEEEE
Confidence 3 3468999999984 455554 55899999999999999999876 67899999984 45 467778
Q ss_pred eCCC---cEEEEECCCC-ceEEecc-ccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCe
Q 011970 290 QENE---NLQILDVRNA-ELMEVSR-TEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 361 (474)
Q Consensus 290 ~~D~---tIkIWDv~tg-~~~~~l~-~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v 361 (474)
+.|+ +|++||++++ +++..+. +|...|.+++|+| ++++|++++ |++|+|||++ ++++.++.+|..+ |
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v 308 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----C 308 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----C
T ss_pred ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----e
Confidence 8898 9999999997 6778888 9999999999999 999999999 9999999995 9999999999987 6
Q ss_pred eEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC---CCCCccccCCCCCCccccccccccc
Q 011970 362 NNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC---SPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 362 ~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
.+++|+||| ++|++++. |++|+|||+.+++.......... .+..... ......+...+.....+
T Consensus 309 ~~~~~s~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASF-----------DNKIEVQTLQNLTNTLDEQETETKQQESETDFW-NNVSREESKEKPSVFHL 376 (416)
T ss_dssp CCEEECTTCTTEEEECCS-----------SSEEEEEESCCCCCSSCC-----------------------CCSCCCSSCC
T ss_pred EEEEECCCCCCEEEEEec-----------CCcEEEEEccCCCCCcccccccccccCCccccc-ccccccccccccccccc
Confidence 899999999 89999876 99999999998876544322000 0000000 00000000001111111
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
....-....|++++|||||++||+|+.|++|+||+.
T Consensus 377 -~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 377 -QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp -CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred -cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 111124457889999999999999999999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=351.99 Aligned_cols=314 Identities=12% Similarity=0.120 Sum_probs=246.4
Q ss_pred EeeCCCeEEe----eeccccceeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 103 ALAHSGVCAA----FSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 103 s~s~dgtikl----W~~~tg~~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+|...|+-.+ +..++.++..+|.| |.+.|++|+|+|+ +++|||+| .| ++++||++..++.....
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~G-H~~~V~~v~~sp~~~~~l~S~s----~D------~~i~vWd~~~~~~~~~~ 77 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKG-HNGWVTQIATTPQFPDMILSAS----RD------KTIIMWKLTRDETNYGI 77 (340)
T ss_dssp -----------------CEEEEEEEECC-CSSCEEEEEECTTCTTEEEEEE----TT------SCEEEEEECCSSSCSEE
T ss_pred cccCCCCccEEEEEccCCceEEEEEECC-ccCCEEEEEEeCCCCCEEEEEc----CC------CeEEEEECCCCCcccce
Confidence 3444454333 33455567779997 8899999999998 68999976 55 69999999888765443
Q ss_pred ceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEE
Q 011970 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 178 ~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIk 253 (474)
++... +|...|..++|+ |||++|++++.|++|++|+...+....... ...+..+.++| +..++++ +.|+.++
T Consensus 78 ~~~~l~~h~~~V~~~~~s-~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~ 153 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIK 153 (340)
T ss_dssp EEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEE
T ss_pred eeEEEeCCCCCEEEEEEC-CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceee---cCCCeEE
Confidence 33322 355678899998 799999999999999999999988776654 46788899997 6666665 4589999
Q ss_pred EEecCCCeEEE-EEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 254 ILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 254 LWdi~tG~~L~-tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
+||+....... .+.+|...+..++|.+.... .+++++.|++|++||+++++++..+.+|...|.+++|+|+|++|+++
T Consensus 154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence 99998765543 34578889999999754434 45567899999999999999999999999999999999999999999
Q ss_pred c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 332 R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 332 s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
+ |++|+|||++ ++++..+.+|.. |..++|+|++.+++++. |++|+|||+.+++++.+++.
T Consensus 234 s~Dg~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 234 GKDGQAMLWDLNEGKHLYTLDGGDI------INALCFSPNRYWLCAAT------------GPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp ETTCEEEEEETTTTEEEEEEECSSC------EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECC
T ss_pred eCCCeEEEEEeccCceeeeecCCce------EEeeecCCCCceeeccC------------CCEEEEEECCCCeEEEeccc
Confidence 9 9999999995 999999987753 78999999998887653 89999999999999999876
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.... ....+...|++|+|+|||++||||+.||+|+|||.
T Consensus 296 ~~~~~-------------------------~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 296 EVIST-------------------------SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp C--------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred cceee-------------------------eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 54200 00011238999999999999999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=381.77 Aligned_cols=317 Identities=11% Similarity=0.123 Sum_probs=271.4
Q ss_pred ccccEEEEEee--cc-EEEEeeCCCeEEeeeccccceeeEeecCCCc---eEEEEEEeeC-CCEEEEEEeecCCCcccee
Q 011970 87 KRTKVIEIVAA--RD-IVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKN-NDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 87 ~~~~V~~i~~s--~~-~las~s~dgtiklW~~~tg~~l~~l~g~~~~---~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk 159 (474)
|...|..+.|+ ++ +|++++.||++++||..+++++.++.+ |.. .|.+++|+|+ |+.|++++ .|
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~----~d----- 228 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVG----SD----- 228 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEE----TT-----
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEe----CC-----
Confidence 56778999999 44 899999999999999999999999997 667 8999999999 99999976 45
Q ss_pred eeEEEEeEeccCCCCCccceeee---ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC------CcEE
Q 011970 160 CRSTKIEYIRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQ 230 (474)
Q Consensus 160 ~~~~~iw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~------~~V~ 230 (474)
..+++|++.+|++... +.. .+...+..++|+ +|++|++++.|++|++||+.+++++.++.. ..+.
T Consensus 229 -g~i~vwd~~~~~~~~~---~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 229 -RKISCFDGKSGEFLKY---IEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp -CCEEEEETTTCCEEEE---CCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred -CeEEEEECCCCCEeEE---ecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 6899999999987442 211 344567789997 899999999999999999999999988863 4688
Q ss_pred EEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec-----------------------------
Q 011970 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ----------------------------- 281 (474)
Q Consensus 231 ~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~----------------------------- 281 (474)
.+.|+++..+++++ .|+.|++||+.+++++.++.+|...+..++| +.
T Consensus 303 ~~~~~~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 303 GVVATGNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEEEEETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred EEEeCCCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 99998788888774 4789999999999999999877666665555 21
Q ss_pred ---C-------------------------------------------------------------------------CCe
Q 011970 282 ---F-------------------------------------------------------------------------NEK 285 (474)
Q Consensus 282 ---~-------------------------------------------------------------------------~~~ 285 (474)
. +..
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 0 233
Q ss_pred EEEEeC-CCcEEEEECCCCceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc-CCCCcCCCC
Q 011970 286 LLVKQE-NENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCN 360 (474)
Q Consensus 286 ll~~~~-D~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g-H~~~~~~~~ 360 (474)
+++++. |++|++||+.++++. ..+.+|...|.+++|+|||++|++++ |++|+|||+. ++++.++.+ |...
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~----- 533 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK----- 533 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-----
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-----
Confidence 444555 777788887777665 67788999999999999999999999 9999999994 999999998 9876
Q ss_pred eeEEEECC----------CCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 361 TNNIYITS----------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 361 v~svafSp----------Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
|++++|+| ||++||+++. ||+|+|||+.++ +++.++.+|..
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~h~~----------------- 585 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD----------------- 585 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT-----------------
T ss_pred eeEEEEcCccccccccccCCCEEEEEcC-----------CCcEEEEECCCCceechhhhcCcc-----------------
Confidence 79999999 9999999987 999999999998 89999999986
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|+|||+ |+|++.||+|++|+.
T Consensus 586 -----------------~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 -----------------GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp -----------------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred -----------------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 899999999999 999999999999984
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=362.00 Aligned_cols=299 Identities=12% Similarity=0.110 Sum_probs=235.1
Q ss_pred cceeeEeecCCCceEEEEEE-----ee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc--cceeee-ccccCc
Q 011970 118 NRRICFLNVSPDEVIRSLFY-----NK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFES-ESLKWP 188 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~f-----sp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~--~~lf~~-~~~~~~ 188 (474)
.+++.+|.| |.+.|++|+| +| ||+.|||+| .| ++++||++..++.... .++... +|...+
T Consensus 11 ~~~~~~l~g-H~~~V~~~~~~~s~~~~~d~~~l~sgs----~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILEG-HSDWVTSIVAGFSQKENEDSPVLISGS----RD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEEEEC-CSSCEEEEEECCCSSTTCCCCEEEEEE----TT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE
T ss_pred eeeeeeecc-chhhhhheeeEEEeecCCCCCEEEEEc----CC------CEEEEEECCcCCcccccccccchhccCCCce
Confidence 456778997 8899999999 76 999999976 55 6999999976653211 111111 355677
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
..|+|+ |+|++|++|+.|++|||||+.+++++.++. ...|.+|+|+| +..|+++ +.|++|+|||+. +++...
T Consensus 80 ~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~wd~~-~~~~~~ 154 (343)
T 2xzm_R 80 SDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLWNIL-GECKFS 154 (343)
T ss_dssp EEEEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEEESS-SCEEEE
T ss_pred EEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEEecc-CCceee
Confidence 899998 799999999999999999999999998885 46899999998 4566655 458999999997 555555
Q ss_pred Ee---ecCcceeEEEEEecC---------CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 266 FY---HLLHRNKKVDFIEQF---------NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 266 l~---~h~~~v~~V~F~~~~---------~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
+. +|...+..++|++.. +..+++++.|++|+||| .++++..++.+|...|.+++|+|||++|+|++
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 54 688889999998532 25788899999999999 56778888899999999999999999999999
Q ss_pred CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE--Eec
Q 011970 333 NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA--KIN 408 (474)
Q Consensus 333 D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~--tl~ 408 (474)
|++|+|||+ + +.+...+. |... |++++|+||+++|++++ |++|+|||+.+++++. ++.
T Consensus 234 dg~v~iwd~~~~~~~~~~~~-~~~~-----v~~v~~sp~~~~la~~~------------d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFD-AGST-----INQIAFNPKLQWVAVGT------------DQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEE-CSSC-----EEEEEECSSSCEEEEEE------------SSCEEEEESSSCCSCSEEECC
T ss_pred CCeEEEEECCCCcccceeec-CCCc-----EEEEEECCCCCEEEEEC------------CCCEEEEEeCCCCCCceEEee
Confidence 999999999 4 55566664 3222 79999999999998664 8899999999988765 554
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+.. .+. .....+...|++|+|+|||+.||+|+.||+|++|+.
T Consensus 296 ~~~~---~~~--------------------~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 296 AEPI---TKA--------------------EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCSG---GGB--------------------TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred cCcc---hhh--------------------hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 2210 000 000001127999999999999999999999999973
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=369.98 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=226.8
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccc------------cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecC
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET------------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS 152 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~t------------g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s 152 (474)
+...|.++.|+ |++|++++ |+++|+||... +.+...+. ++..|.+|+|+||+ .|++++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~-~l~~~s---- 100 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ--TEAGVADLTWVGER-GILVAS---- 100 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEE--ESSCEEEEEEETTT-EEEEEE----
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeec--cCCCEEEEEEeCCC-eEEEEE----
Confidence 44568888998 89999888 88999997321 22222222 45679999999997 477765
Q ss_pred CCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEE
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQ 230 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~ 230 (474)
.| .+|+|||+.+|+..........+|...|.+|+|+ |||++||+|+.|++|||||++++++++++. .+.|.
T Consensus 101 ~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 101 DS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp TT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 55 6999999999987543332222456778899998 799999999999999999999999999996 46899
Q ss_pred EEEEcC-Cc-eEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 231 EIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 231 ~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
+++|+| +. +|+++ +.|++|+|||+++|+++.++. .|.+.+.+++|++.++..+++++.|++|+|||+++++++
T Consensus 174 ~~~~~~~~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 174 CVAASPHKDSVFLSC---SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250 (344)
T ss_dssp EEEECSSCTTEEEEE---ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred EEEecCCCCCceeee---ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence 999997 43 45655 558999999999999999886 455678999998655556677899999999999999999
Q ss_pred EeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCc
Q 011970 307 EVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPE 382 (474)
Q Consensus 307 ~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~ 382 (474)
.++.+|...|++++|+|+| ++|||++ |++|+|||++ |+++ .+.+|... |++|+|+|||+ +|+|++.
T Consensus 251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-----V~~v~~sp~~~~llas~s~---- 320 (344)
T 4gqb_B 251 LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-----VRDATWSPLNHSLLTTVGW---- 320 (344)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-----EEEEEECSSSTTEEEEEET----
T ss_pred EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-----EEEEEEeCCCCeEEEEEcC----
Confidence 9999999999999999998 5899999 9999999996 7665 57899987 79999999986 6778876
Q ss_pred cccccCCCCeEEEEeCCCCeE
Q 011970 383 DQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~c 403 (474)
|++|++|++.+...
T Consensus 321 -------D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 -------DHQVVHHVVPTEPL 334 (344)
T ss_dssp -------TSCEEEEECCC---
T ss_pred -------CCeEEEEECCCCCC
Confidence 99999999977543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=365.37 Aligned_cols=278 Identities=12% Similarity=0.169 Sum_probs=239.0
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|.++.|+ +.+||+++.||+|++||..++++...+.. |...|.+++|+|+|+.|++++ .| ..++
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~----~d------~~i~ 131 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGG----LD------NKCS 131 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEES----TT------SEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEee----CC------CCEE
Confidence 55556666665 89999999999999999999999999997 778899999999999999854 55 6899
Q ss_pred EeEeccCCCCCc---cceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC---
Q 011970 165 IEYIRRGKPDSG---FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--- 236 (474)
Q Consensus 165 iw~i~~G~~~~~---~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp--- 236 (474)
+|++..++.... ...+. .|...+..++|+ |+++.|++++.|++|||||+++++++.++. ...|..++|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVA-MHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEE-ECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEeccccccccccceeee-ccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999865532111 01121 245667789998 799999999999999999999999999886 45799999986
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc--CC
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FM 314 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h--~~ 314 (474)
|..|+++ +.|++|++||+++|++++++.+|...|.+|+|+ |++..|++++.|++|+|||+++++++..+..+ ..
T Consensus 210 g~~l~sg---s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 210 GNTFVSG---GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp CCEEEEE---ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCEEEEE---eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 4567766 458999999999999999999999999999998 67888999999999999999999888776543 35
Q ss_pred ceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 315 TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
.+.+++|+|+|++|++++ |++|+|||+ +|+++.++.+|..+ |++++|+|||++||||+. |++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-----v~~l~~spdg~~l~sgs~-----------D~~ 349 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-----VSTLRVSPDGTAFCSGSW-----------DHT 349 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-----EEEEEECCCCCEEEEEcC-----------CCC
Confidence 788999999999999999 999999999 59999999999987 799999999999999987 999
Q ss_pred EEEEe
Q 011970 393 INVSS 397 (474)
Q Consensus 393 IklWd 397 (474)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=346.11 Aligned_cols=319 Identities=11% Similarity=0.054 Sum_probs=265.7
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
+..+|..++++ |+.+|++..++.+..|............+ |.+.|.+++|+|+|+.|++++ | ..++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-----d------g~i~ 75 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-----K------GCVK 75 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEECSSSSEEEEEC-----B------SEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEecCCcEEEEcC-----C------CeEE
Confidence 45567777777 99998888888777777665544444444 889999999999999998853 3 5899
Q ss_pred EeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC-c
Q 011970 165 IEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPG-I 238 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg-~ 238 (474)
||++..++....+..+.. .+...+..++|+ |+|++|++++.|++|++||+.+++ +...+. ...|.+++|+|+ .
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC
Confidence 999988876443333321 244567789998 799999999999999999999887 555554 467999999985 4
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEE
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 318 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~s 318 (474)
.++++ +.|+.|++||+++++++.++.+|...+..++|+ |++..+++++.|++|++||+++++++..+. |...+.+
T Consensus 155 ~l~~~---~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~ 229 (337)
T 1gxr_A 155 VCFSC---CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFS 229 (337)
T ss_dssp EEEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred EEEEE---eCCCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEE
Confidence 55555 447899999999999999999999999999997 577888889999999999999999988764 6678999
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
++|+|++++|++++ |++|++||++......+.+|... |.+++|+|||++|++++. ||+|++||
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~i~~~~ 293 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWR 293 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc-----eeEEEECCCCCEEEEecC-----------CCcEEEEE
Confidence 99999999999999 99999999974445578888876 789999999999999986 99999999
Q ss_pred CCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 398 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 398 i~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.+++++..+ .|.. .|++++|+|||+.|++|+.||+|++|+.
T Consensus 294 ~~~~~~~~~~-~~~~----------------------------------~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 294 TPYGASIFQS-KESS----------------------------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTTCCEEEEE-ECSS----------------------------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCeEEEEe-cCCC----------------------------------cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999998664 4553 8999999999999999999999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=418.34 Aligned_cols=321 Identities=12% Similarity=0.093 Sum_probs=252.8
Q ss_pred cccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 86 MKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 86 ~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
.+..+|..|.|+ +++||+++.|++|++||+.++++++++. |.+.|.+++|+|+|+.|++++ .| .+++
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs----~d------g~V~ 123 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGL----QN------GSMI 123 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEE----TT------SCEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEc----CC------CcEE
Confidence 367889999999 8899999999999999999999999997 457899999999999999976 45 6899
Q ss_pred EeEeccCCCCCccce-------ee-eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----------
Q 011970 165 IEYIRRGKPDSGFAL-------FE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------- 226 (474)
Q Consensus 165 iw~i~~G~~~~~~~l-------f~-~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---------- 226 (474)
|||+.++++. .+.+ .. .+|...|.+|+|+|.++.+|++|+.|++| |||++++++++++..
T Consensus 124 lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 124 VYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp EEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST
T ss_pred EEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc
Confidence 9999888752 1110 00 12456788999994356799999999999 999999999988853
Q ss_pred ----------CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE--Ee---ec-------------CcceeEEE
Q 011970 227 ----------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV--FY---HL-------------LHRNKKVD 277 (474)
Q Consensus 227 ----------~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t--l~---~h-------------~~~v~~V~ 277 (474)
..|.+|+||| |.+||++ +.|++|+|||+++|+++.. +. .| ...|.+|+
T Consensus 202 ~~~~~~~~h~~~V~~v~fspdg~~lasg---s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~ 278 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHPNSLHIITI---HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVY 278 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECTTSSEEEEE---ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEE
T ss_pred cccccccccCCCeEEEEEcCCCCEEEEE---ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEE
Confidence 4599999998 4556665 5589999999999999874 31 12 34688888
Q ss_pred EEe---cCCCeE--------------------------------------------------------------------
Q 011970 278 FIE---QFNEKL-------------------------------------------------------------------- 286 (474)
Q Consensus 278 F~~---~~~~~l-------------------------------------------------------------------- 286 (474)
|++ |++..+
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~ 358 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYF 358 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHH
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCc
Confidence 863 221222
Q ss_pred ---------EEEeCCCcEEEEECCCCceEE-----------------------------------------eccccCCce
Q 011970 287 ---------LVKQENENLQILDVRNAELME-----------------------------------------VSRTEFMTP 316 (474)
Q Consensus 287 ---------l~~~~D~tIkIWDv~tg~~~~-----------------------------------------~l~~h~~~v 316 (474)
++.+.|++|++||+.+|.... .+.||...+
T Consensus 359 ~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v 438 (902)
T 2oaj_A 359 AGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTK 438 (902)
T ss_dssp HHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCC
T ss_pred CCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCC
Confidence 233345667777776664221 134555566
Q ss_pred EEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE--E----Eec-----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 011970 317 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELV--T----SFE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll--~----tl~-----gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~ 383 (474)
.+++|+|||++|||++ |+|||+||++ |++. . .+. +|..+ |++|+|+|||++||+|+.
T Consensus 439 ~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~-----V~svafspdg~~LAsgs~----- 508 (902)
T 2oaj_A 439 RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA-----VDKISFAAETLELAVSIE----- 508 (902)
T ss_dssp CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC-----EEEEEEETTTTEEEEEET-----
T ss_pred CcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCc-----eeEEEecCCCCeEEEEec-----
Confidence 6677789999999999 9999999995 6431 1 122 78776 799999999999999987
Q ss_pred ccccCCCCeEEEEeCCCC---------------------------------------------eEEEEecCCCCCCCCcc
Q 011970 384 QWMEGSAGSINVSSILTG---------------------------------------------KCLAKINATNCSPKVDD 418 (474)
Q Consensus 384 ~~~~s~DgtIklWdi~tG---------------------------------------------~cl~tl~gH~~~~~~~~ 418 (474)
||+|||||+.++ +|+++|++|+.
T Consensus 509 ------DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------ 576 (902)
T 2oaj_A 509 ------TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------ 576 (902)
T ss_dssp ------TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC------
T ss_pred ------CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC------
Confidence 999999999877 46788888875
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+||||| +||+|+.|++|+|||.
T Consensus 577 ----------------------------~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 577 ----------------------------KTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp ----------------------------SEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ----------------------------cEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 89999999999 9999999999999984
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-46 Score=374.26 Aligned_cols=284 Identities=11% Similarity=0.150 Sum_probs=239.4
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|.++.|+ +++||+++.||+|++||..+++++.++.+ |...|.+++|+|+|+.|++++ .| .+++
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~----~d------~~v~ 133 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGG----LD------SACS 133 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECC----SS------SCCE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEee----CC------CcEE
Confidence 66677777777 89999999999999999999999999997 778899999999999999854 56 6899
Q ss_pred EeEeccCCCCC-ccc---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-------cCCcEEEEE
Q 011970 165 IEYIRRGKPDS-GFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-------SDKHVQEIK 233 (474)
Q Consensus 165 iw~i~~G~~~~-~~~---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-------~~~~V~~va 233 (474)
||++..+.... ..+ .+. +|...+..++|+|.++..|++|+.|++|+|||+.+++++.++ +...|.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 99986543211 011 122 245566789998655678999999999999999999998877 235799999
Q ss_pred EcC--CceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc
Q 011970 234 ISP--GIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 234 fSp--g~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~ 310 (474)
|+| +.+++++ +.|++|+|||++ ++++++++.+|...|.+|+|+ |++..|++++.|++|+|||++++++++++.
T Consensus 213 ~~~~~~~~l~sg---s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 213 INSLNANMFISG---SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp ECSSSCCEEEEE---ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred eecCCCCEEEEE---ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 985 4566665 558999999998 568899999999999999998 678889999999999999999999998876
Q ss_pred ccCC-------ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe----ccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 311 TEFM-------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 311 ~h~~-------~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl----~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.|.. .|.+++|+|+|++|++++ |++|+|||.. ++++.++ .+|... |++++|+|||++|||||
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-----CCEEEECSSSSEEEEEC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-----eEEEEECCCCCEEEEee
Confidence 5432 488999999999999999 9999999994 9999888 688876 68999999999999998
Q ss_pred cCCCccccccCCCCeEEEEeCCCCe
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
. |++|+||++..++
T Consensus 364 ~-----------D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 364 W-----------DKNLKIWAFSGHR 377 (380)
T ss_dssp T-----------TSCEEEEECCSSS
T ss_pred C-----------CCCEEEEecCCCc
Confidence 7 9999999986543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=357.69 Aligned_cols=282 Identities=9% Similarity=0.109 Sum_probs=234.4
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccc-----cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-----g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|.+|.|+ +++||+++.|++|++|++.+ +.++.++.+ |...|.+++|+|||+.|+++| .|
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s----~D---- 86 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSAS----WD---- 86 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEE----TT----
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEEe----CC----
Confidence 33445555554 37999999999999999864 557888997 789999999999999999976 55
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP 236 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp 236 (474)
++++|||+.+|++... |. +|...+.+|+|+ |+|++|++|+.|++|||||++ ++++.++. ...|..++|+|
T Consensus 87 --~~v~~wd~~~~~~~~~---~~-~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 --KTLRLWDVATGETYQR---FV-GHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp --SEEEEEETTTTEEEEE---EE-CCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECC
T ss_pred --CEEEEEECCCCCeeEE---Ec-cCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEcc
Confidence 6999999999986432 22 245667799998 799999999999999999986 56777775 46899999998
Q ss_pred Cc-------eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 237 GI-------MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 237 g~-------~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
.. .++++ +.|++|++||++++++..++.+|...+..++|+ |++..|++++.|++|+|||+.+++++.++
T Consensus 159 ~~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 159 NEKADDDSVTIISA---GNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp C------CCEEEEE---ETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CCCCCCCccEEEEE---eCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 43 45655 558999999999999999999999999999998 67888889999999999999999999988
Q ss_pred cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCc---CCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~---~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.+| ..|.+++|+|++++|+++++..|++|+++ +.++..+..+.... ....+.+++|||||++|++|+.
T Consensus 235 ~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~------- 306 (319)
T 3frx_A 235 SAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT------- 306 (319)
T ss_dssp ECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-------
T ss_pred cCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-------
Confidence 765 58999999999999999988889999996 77777776442210 0123689999999999999987
Q ss_pred ccCCCCeEEEEeCCCC
Q 011970 386 MEGSAGSINVSSILTG 401 (474)
Q Consensus 386 ~~s~DgtIklWdi~tG 401 (474)
|++|+|||+.|+
T Consensus 307 ----Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 ----DNVIRVWQVMTA 318 (319)
T ss_dssp ----TSCEEEEEEEEC
T ss_pred ----CceEEEEEEeec
Confidence 999999999775
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=372.43 Aligned_cols=340 Identities=14% Similarity=0.090 Sum_probs=255.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEecc---CCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR---GKP 173 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~---G~~ 173 (474)
++.+++++ .|+ .+|+++.+|..+|.+.|.+|+|+| +|+.|||+| .| ++++||++.+ ++.
T Consensus 39 ~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s----~d------g~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 39 QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS----DQ------GVIKIWNLKEIIVGEV 101 (437)
T ss_dssp CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE----TT------SEEEEEEHHHHHTTCC
T ss_pred cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec----CC------ceEEEeECcccccCcc
Confidence 55555554 498 569999999445889999999999 999999976 55 6999999977 653
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC---CCeEEEEEcCCcEEEEEEc---------------
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKHVQEIKIS--------------- 235 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~---tg~~l~tl~~~~V~~vafS--------------- 235 (474)
... .+...|...+.+|+|+ |+|++|++++.|++|+|||+. +++++..+..+.|..+.|+
T Consensus 102 ~~~--~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 102 YSS--SLTYDCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp CSC--SEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred cce--eeeccCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 321 2222245677899998 799999999999999999994 7777776655556666544
Q ss_pred -C-CceEEEEecCCCCccEEEEecCCCeEEEEEee--cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-
Q 011970 236 -P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR- 310 (474)
Q Consensus 236 -p-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~--h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~- 310 (474)
| +.+++++ +.|++|++||+++++++.++.+ |...+.+++|+ |++..|++++.|++|+|||+++++++..+.
T Consensus 179 ~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 179 NEEKSLLVAL---TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CSSCEEEEEE---ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred cCCCCEEEEE---eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 3 5566665 4589999999999999999998 88899999997 668888889999999999999999998875
Q ss_pred ccCCceEEEE----EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcC---------------------CCCeeE
Q 011970 311 TEFMTPSAFI----FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP---------------------DCNTNN 363 (474)
Q Consensus 311 ~h~~~v~sv~----Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~---------------------~~~v~s 363 (474)
+|...|.+++ |+|++++|++++ |++|+|||++ |+++.++.+|...+. ...|++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 7778999994 556899999999 9999999995 999999998853221 112678
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc--cccccccc-cccc
Q 011970 364 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS--KKLNKSSY-IRST 440 (474)
Q Consensus 364 vafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 440 (474)
++|+ ++++|++++. |++|++||+.+|+++.++.+|...........-...+.. ......+. ....
T Consensus 335 l~~~-~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 335 ISVS-NDKILLTDEA-----------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp EEEE-TTEEEEEEGG-----------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred EEEC-CceEEEecCC-----------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 9999 8899999887 999999999999999999998641000000000000000 00000000 0011
Q ss_pred ccccccCEEEEEEcCC--CCEEEEEcCCCcEEEcc
Q 011970 441 VGEALEDITSLFYDEE--RNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 441 ~~~~l~~V~slafSpD--g~~LaSgs~DgtVklWd 473 (474)
...+.+.|++|+|+|+ +..|+||+.||+|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 1235669999999999 88999999999999996
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=402.63 Aligned_cols=311 Identities=13% Similarity=0.029 Sum_probs=229.4
Q ss_pred cEEEEeeCCCeEEeeecccccee----eEeecCCCceEEEEEEeeC------CCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 99 DIVFALAHSGVCAAFSRETNRRI----CFLNVSPDEVIRSLFYNKN------NDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l----~~l~g~~~~~i~sv~fspd------g~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+++|+++.|++|+||++.++++. .++.+ |...|++|+|+|+ +++||++| .| .+++||++
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~s----~D------gtvrlWd~ 242 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFVS----QE------GTINFLEI 242 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEEE----TT------SCEEEEEC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEEe----cC------CeEEEEEc
Confidence 35788889999999999988863 34554 6678999999997 57999977 45 69999999
Q ss_pred ccCCCCCc------cceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEE--cCCcEEEE--EEcC
Q 011970 169 RRGKPDSG------FALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKHVQEI--KISP 236 (474)
Q Consensus 169 ~~G~~~~~------~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl--~~~~V~~v--afSp 236 (474)
..++.... .+.+.. .+...+.+|+|+ +++ .||+|+.|++|+|||+.++. ++.++ |...|.+| +|+|
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEec-CCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 88764211 111121 244677899998 444 79999999999999999875 33444 56789999 5677
Q ss_pred C--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCc--ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc
Q 011970 237 G--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 312 (474)
Q Consensus 237 g--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~--~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h 312 (474)
+ .+||++ +.|++|||||++++++++++.+|.. .+.+|+|+ |++..+++++.|++|+|||++++.++.++.+|
T Consensus 321 ~g~~~laS~---S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 321 FEDTVVSTV---AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp TSCCEEEEE---ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred CCCeEEEEe---ccCCeEEEEECCCCCcccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 5 466766 5589999999999999999988764 57899998 66788888999999999999999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
...|++++|||+|++|+|++ |++|+|||+.+.++++++.+..++....+++++|+|||+.+.. +.
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--------------~~ 462 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--------------DS 462 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--------------CC
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--------------cC
Confidence 99999999999999999999 9999999997655544433222322223689999999997643 23
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC---EEEEEcCCC
Q 011970 392 SINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN---EIYTGNRHG 467 (474)
Q Consensus 392 tIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~---~LaSgs~Dg 467 (474)
.+++|+.. +|+|+.+|.+|.. .|++|+||||++ .||+|+.||
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~----------------------------------~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGI----------------------------------NITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp CCCCCC-------------CCC----------------------------------SCCCEEECCSTTTTTEEEEECTTS
T ss_pred CceecccccCCcceeeecCCCc----------------------------------eEEEEECCCCCCccHHHHhhccCc
Confidence 45555543 7999999999986 899999999965 999999999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
+||||+.
T Consensus 509 ~vrlw~l 515 (524)
T 2j04_B 509 LLTLEYL 515 (524)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 9999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=417.75 Aligned_cols=323 Identities=11% Similarity=0.113 Sum_probs=249.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeecccccee-----------eEeecCCCceEEEEEEeeCC-CEEEEEEeecC
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI-----------CFLNVSPDEVIRSLFYNKNN-DSLITVSVYAS 152 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l-----------~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s 152 (474)
+...|..+.|+ +++||+++.||+|++||+.++++. .++.+ |...|++|+|+|++ ..|+++ +
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g----~ 171 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLIS----Y 171 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEE----C
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc-CCCCeEEEEEccCCCCEEEEE----e
Confidence 55678899998 999999999999999999988865 23444 77899999999974 567764 3
Q ss_pred CCccceeeeEEEEeEeccCCCCCcccee--------------eeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALF--------------ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY 218 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf--------------~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg 218 (474)
.| .++ |||++.+++...+... ...|...+.+|+|+ |||++||+++.|++|+|||+++|
T Consensus 172 ~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 172 EY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp SS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTC
T ss_pred CC------CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCC
Confidence 56 689 9999988864322211 00123567899998 79999999999999999999999
Q ss_pred eEEEE--E-----c-------------CCcEEEEEEc----CC--ceEEEEecC--------------------------
Q 011970 219 TMLYS--I-----S-------------DKHVQEIKIS----PG--IMLLIFNRS-------------------------- 246 (474)
Q Consensus 219 ~~l~t--l-----~-------------~~~V~~vafS----pg--~~la~~s~~-------------------------- 246 (474)
+++.. + + ...|.+|+|+ |+ .++++++..
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 323 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG 323 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence 98764 3 1 1269999995 43 334443211
Q ss_pred -----------------------------------------------CCCccEEEEecCCCeEEEE--------------
Q 011970 247 -----------------------------------------------SSHVPLKILSIEDGTVLKV-------------- 265 (474)
Q Consensus 247 -----------------------------------------------s~D~tIkLWdi~tG~~L~t-------------- 265 (474)
+.|++|++||+.+|+.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence 0135678888777754322
Q ss_pred ---------------------------EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE-----Ee-c---
Q 011970 266 ---------------------------FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-----EV-S--- 309 (474)
Q Consensus 266 ---------------------------l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-----~~-l--- 309 (474)
|.+|...+.+|+|+ |++..|++++.|++|||||+.++++. .. +
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 22333334445554 46677888899999999999998532 11 1
Q ss_pred --cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C------------------------------------------
Q 011970 310 --RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G------------------------------------------ 343 (474)
Q Consensus 310 --~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G------------------------------------------ 343 (474)
.+|...|++++|+|||++||+++ |++|+|||+. +
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 28999999999999999999999 9999999995 5
Q ss_pred ---cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE--E---ec-CCCCCC
Q 011970 344 ---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA--K---IN-ATNCSP 414 (474)
Q Consensus 344 ---~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~--t---l~-gH~~~~ 414 (474)
+++.+|++|..+ |++|+||||| +||+|+. |++|+|||+.+++.+. + +. +|+.
T Consensus 563 ~g~~~~~~l~~h~~~-----V~svafSpdG-~lAsgs~-----------D~tv~lwd~~~~~~~~~~~~~~~~~gh~~-- 623 (902)
T 2oaj_A 563 QGFMPSTAVHANKGK-----TSAINNSNIG-FVGIAYA-----------AGSLMLIDRRGPAIIYMENIREISGAQSA-- 623 (902)
T ss_dssp EEEEEEEEECCCSCS-----EEEEEECBTS-EEEEEET-----------TSEEEEEETTTTEEEEEEEGGGTCSSCCC--
T ss_pred CccceeEEEEcCCCc-----EEEEEecCCc-EEEEEeC-----------CCcEEEEECCCCeEEEEeehhHhcccccc--
Confidence 358899999987 7999999999 9999987 9999999998887765 2 32 7775
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEc-----CCC---CEEEEEcCCCcEEEccC
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-----EER---NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS-----pDg---~~LaSgs~DgtVklWd~ 474 (474)
+|++|+|| ||| ++|+||+.|++|++||.
T Consensus 624 --------------------------------~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 624 --------------------------------CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp --------------------------------CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred --------------------------------ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 89999999 886 89999999999999983
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=366.66 Aligned_cols=283 Identities=12% Similarity=0.116 Sum_probs=226.1
Q ss_pred cccccEEEEEee--ccEEEEeeC------CCeEEeeeccccceee----EeecCCCceEEEEEEeeCCCEEEEEEeecCC
Q 011970 86 MKRTKVIEIVAA--RDIVFALAH------SGVCAAFSRETNRRIC----FLNVSPDEVIRSLFYNKNNDSLITVSVYASD 153 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~------dgtiklW~~~tg~~l~----~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~ 153 (474)
.|...|.+|.|+ |.+||++|. |+++++|+..+|+... ... .|...|.+|+|+|++..| +++ .
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~d~~~l-~~s----~ 113 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGV-QTEAGVTDVAWVSEKGIL-VAS----D 113 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEE-ECSSCEEEEEEETTTEEE-EEE----T
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccC-CCCCCEEEEEEcCCCCEE-EEE----C
Confidence 478889999999 999999998 7889999988776432 233 367889999999999754 444 4
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEE
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQE 231 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~ 231 (474)
| .+++|||+.+|+......+-..+|...|.+|+|+ |||++|++|+.|++|+|||+.+++++.++. ...|.+
T Consensus 114 d------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 114 S------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp T------SCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred C------CEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 4 5899999999886443232222355678899998 799999999999999999999999999886 468999
Q ss_pred EEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 232 IKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 232 vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
|+|+|+ ..++++ +.|++|+|||+++|+++..+. .|...+.+|+|+|..+..+++++.|++|+|||++++++++
T Consensus 187 v~~s~~~~~~~~s~---~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 187 VAACPGKDTIFLSC---GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp EEECTTCSSCEEEE---ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE
T ss_pred EEEccCCCceeeee---ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE
Confidence 999973 356665 458999999999999887765 3556789999985444556668899999999999999999
Q ss_pred eccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCcc
Q 011970 308 VSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPED 383 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~ 383 (474)
++.+|...|.+++|+|++ ++|||++ |++|+|||++ |++++.+ +|... |++|+|+| |+++|||+|.
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-----V~~vafsP~d~~~l~s~s~----- 332 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-----VTGVAWSPLDHSKFTTVGW----- 332 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-----EEEEEECSSSTTEEEEEET-----
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-----EEEEEEeCCCCCEEEEEcC-----
Confidence 999999999999999987 6789998 9999999996 8888766 79887 79999999 8999999987
Q ss_pred ccccCCCCeEEEEeCCCC
Q 011970 384 QWMEGSAGSINVSSILTG 401 (474)
Q Consensus 384 ~~~~s~DgtIklWdi~tG 401 (474)
||+|++||+.+.
T Consensus 333 ------Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 ------DHKVLHHHLPSE 344 (357)
T ss_dssp ------TSCEEEEECC--
T ss_pred ------CCeEEEEECCCC
Confidence 999999999653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=406.42 Aligned_cols=364 Identities=15% Similarity=0.179 Sum_probs=293.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|...|..+.|+ +++||+++.||+|++||..+|+++.++.+ |...|.+++|+|||+.||+++ .| ++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~----~d------~~v~ 682 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCS----AD------KKVK 682 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEe----CC------CeEE
Confidence 78899999999 99999999999999999999999999996 788999999999999999976 45 6899
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIML 240 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~l 240 (474)
|||+.+|++... +. ++...+..++|++. ++.+|++|+.|++|++||+.+++++.++. ...|.+++|+| +..+
T Consensus 683 vwd~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 683 IWDSATGKLVHT---YD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EEETTTCCEEEE---EE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred EEECCCCceEEE---Ec-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence 999999987442 22 24566779999832 56799999999999999999999999886 46899999998 5566
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEe-----------------------------------------------------
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFY----------------------------------------------------- 267 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~----------------------------------------------------- 267 (474)
+++ +.|++|++||+.+++++.++.
T Consensus 759 ~s~---s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 759 ASC---SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp EEE---ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEE---ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 665 458999999999888776653
Q ss_pred --ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC---
Q 011970 268 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--- 341 (474)
Q Consensus 268 --~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--- 341 (474)
+|...+..++|+ |++..+++++.|++|++||+.+++++..+.+|...|.+++|+|+|++|++++ |++|++||+
T Consensus 836 ~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp ECSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 566778899997 6788888899999999999999999999999999999999999999999998 999999873
Q ss_pred -----------------------------------------------------------------------------CCc
Q 011970 342 -----------------------------------------------------------------------------RGE 344 (474)
Q Consensus 342 -----------------------------------------------------------------------------~G~ 344 (474)
+|+
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 245
Q ss_pred EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC----------------------------cc-ccccCCCCeEEE
Q 011970 345 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP----------------------------ED-QWMEGSAGSINV 395 (474)
Q Consensus 345 ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~----------------------------~~-~~~~s~DgtIkl 395 (474)
++.++.+|... |.+++|+|||++|++++.... +. -++++.|++|++
T Consensus 995 ~~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 995 VFSSGVGHKKA-----VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CEEECCCCSSC-----CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEE
T ss_pred eeeecccCCCc-----eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEE
Confidence 56677788876 689999999999999875211 00 045667889999
Q ss_pred EeCCCCeEEEEecCCCCCCCCccccCCCCCCcc---cccccccccccccc-----ccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 396 SSILTGKCLAKINATNCSPKVDDELGSSSTGKS---KKLNKSSYIRSTVG-----EALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
||+.+|+++.++.+|......-..++.+...++ .....+|++....+ .+...|++++|||||+.||||+.||
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999862221122222222222 22344555433222 3445899999999999999999999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
+|+|||.
T Consensus 1150 ~i~vwd~ 1156 (1249)
T 3sfz_A 1150 EIRIWNV 1156 (1249)
T ss_dssp CCCEEES
T ss_pred EEEEEEC
Confidence 9999984
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=364.18 Aligned_cols=286 Identities=10% Similarity=0.084 Sum_probs=219.5
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee------ccccCceEEEEeCCCCeEEEE
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES------ESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~------~~~~~~~~V~Fs~~nGk~LaS 203 (474)
-+|++|+|+|||+.|++++.+.+.. .+. ..++||++..+.......+... .+-.+|.+++|+ +..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~s--Gi~-N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNN--GIP-NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSS--SCC-EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCcccc--CCC-CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence 3599999999999999987433210 110 4789999876654221111110 123455567765 445544
Q ss_pred -----------ecCCCcEEEeecCCCeE-E---EEEc-------CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 204 -----------SAQDSIYKVFDLKNYTM-L---YSIS-------DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 204 -----------~s~D~tiKlWdl~tg~~-l---~tl~-------~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
++.|+++|+|++.++.. + .... +..|..|+|||++.+++.++++.|++|||||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 45689999999876542 2 2221 246999999995554433335679999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CC----
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 334 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~---- 334 (474)
++.++. |.+.|.+|+|+ |++..+++++ |+++++|+..+++++. +..+|...|++++|+|||+++++++ |+
T Consensus 169 ~~~~~~-~~~~V~~v~fs-pdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 169 EKFEIE-TRGEVKDLHFS-TDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEE-CSSCCCEEEEC-TTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred EEEEeC-CCCceEEEEEc-cCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 999997 55789999998 5666665555 6677888888888764 4677999999999999999999998 77
Q ss_pred cEEEEeCC-CcE----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-c
Q 011970 335 TVAVWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-N 408 (474)
Q Consensus 335 tIklWd~~-G~l----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~ 408 (474)
++++||+. ++. ...+.+|... |++++|||||++||+|+. |++|+|||+.+|++++++ +
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~~Spdg~~lasgs~-----------D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKG-----ITSMDVDMKGELAVLASN-----------DNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSC-----EEEEEECTTSCEEEEEET-----------TSCEEEEETTTTEEEEEETT
T ss_pred EEeecccccceecceeeeeecCCCCC-----eEeEEECCCCCceEEEcC-----------CCEEEEEECCCCcEEEEecC
Confidence 78999984 443 4578899887 799999999999999987 999999999999999985 7
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+|.. .|++|+|||||++|||||.|+||||||+
T Consensus 310 gH~~----------------------------------~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSF----------------------------------AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSSS----------------------------------CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred cccC----------------------------------CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9996 8999999999999999999999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=355.58 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=226.4
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceee--EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~--~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
.|..+.|+ +++||+++.|++|++|+.++++.++ .+..+|...|++|+|+|+|++||++| .| .+++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s----~D------~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS----FD------ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE----TT------SCEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE----CC------CcEEE
Confidence 45555665 9999999999999999999887554 33345889999999999999999976 55 68999
Q ss_pred eEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEc--CCcEEEEEEcC-Cce
Q 011970 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GIM 239 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~--~~~V~~vafSp-g~~ 239 (474)
|++..++...- ..+. +|...+..|+|+ |+|++||+|+.|++|+|||+.++. ++..+. ...|.+++|+| +.+
T Consensus 88 w~~~~~~~~~~-~~~~-~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 88 WKKNQDDFECV-TTLE-GHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEECCC-EEEE-EEEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEccCCCeEEE-EEcc-CCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 99887753110 1122 245677899998 799999999999999999998763 556664 46799999998 556
Q ss_pred EEEEecCCCCccEEEEecCCCe--EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---------------
Q 011970 240 LLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------------- 302 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~--~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--------------- 302 (474)
||++ +.|++|+|||+++++ ++.++.+|...|.+|+|+ |++..|++++.|++|+|||+..
T Consensus 165 l~s~---s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 165 LASA---SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp EEEE---ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred EEEE---eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 6665 458999999999885 568899999999999998 6788899999999999999632
Q ss_pred CceEEeccc-cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc---------EEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 303 AELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 303 g~~~~~l~~-h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~---------ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
.+|+.++.+ |...|++++|+|++.+|++++ |++|++|+.+ +. ....+.+|... |++|+|+|++
T Consensus 241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~ 315 (345)
T 3fm0_A 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD-----VNCVAWNPKE 315 (345)
T ss_dssp EEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC-----EEEEEECSSS
T ss_pred cceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc-----EeEeEEeCCC
Confidence 245666665 899999999999999999999 9999999985 32 12345688876 7999999998
Q ss_pred -CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 371 -DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 371 -~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.+|||++. ||+|+||++.+++-+..+
T Consensus 316 ~~~laS~s~-----------Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 316 PGLLASCSD-----------DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTEEEEEET-----------TSCEEEEEECC-------
T ss_pred ceEEEEcCC-----------CCcEEEEEecCCCCcccc
Confidence 59999987 999999999988766544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=350.82 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=220.1
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeecccc--ceeeEee-cCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETN--RRICFLN-VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg--~~l~~l~-g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
|..+|.++.|+.++||+++.||+|++|++.++ +++.++. +.|...|++|+|+|+|+.|+++| .| +++
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s----~D------~~v 82 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS----FD------STV 82 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE----TT------SCE
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe----CC------CcE
Confidence 56678888999889999999999999999876 5677773 44889999999999999999976 55 689
Q ss_pred EEeEeccCCCC--Cc--cceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-C---CeEEEEEc--CCcEEEEE
Q 011970 164 KIEYIRRGKPD--SG--FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N---YTMLYSIS--DKHVQEIK 233 (474)
Q Consensus 164 ~iw~i~~G~~~--~~--~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-t---g~~l~tl~--~~~V~~va 233 (474)
+||++..+... .. ...+. +|...+..|+|+ |||++||+|+.|++|+|||+. . ++++.++. ...|.+|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEC-------CCCEEEEEEC-----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEcccCcCccccceeEEEEc-CCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 99998543211 00 01122 355677899998 799999999999999999994 2 35777775 46799999
Q ss_pred EcC-CceEEEEecCCCCccEEEEecCCC--eEEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCC------
Q 011970 234 ISP-GIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNA------ 303 (474)
Q Consensus 234 fSp-g~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg------ 303 (474)
|+| +.+|+++ +.|++|||||+.++ +++.++.+|...|++++|++.. +..|++++.|++|+|||+.++
T Consensus 161 ~~p~~~~l~s~---s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 161 WHPSEALLASS---SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp ECSSSSEEEEE---ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred ECCCCCEEEEE---cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 998 5556655 55899999999887 7899999999999999998533 346777899999999999876
Q ss_pred --ceEEeccc-cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--EEE-EeccCCC-CcCCCCeeEEEECC--CCCE
Q 011970 304 --ELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVT-SFEDHLL-WHPDCNTNNIYITS--DQDL 372 (474)
Q Consensus 304 --~~~~~l~~-h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--ll~-tl~gH~~-~~~~~~v~svafSp--Dg~~ 372 (474)
++...+.+ |...|++++|+|++ +|++++ |++|+|||.. |+ ++. .+.+|.. . |+.++|+| ||++
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~-----v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE-----INVVKWLELNGKTI 311 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC-----EEEEEEC-----CC
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccce-----EEEEEEecCCCceE
Confidence 56666665 99999999999877 677777 9999999994 63 443 3468876 4 79999999 7999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
||||+. ||+|+|||+.+
T Consensus 312 las~s~-----------Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGD-----------DGIVNFWSLEK 328 (330)
T ss_dssp EEEEET-----------TSEEEEEEC--
T ss_pred EEEecC-----------CCcEEEEEecc
Confidence 999987 99999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-43 Score=356.21 Aligned_cols=302 Identities=13% Similarity=0.176 Sum_probs=261.9
Q ss_pred EEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC
Q 011970 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (474)
Q Consensus 92 ~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G 171 (474)
..+.+.++.||+++.||+|++||..+|+++.++.+ |...|+++.|+ ++.|++++ .| +++++|++.+|
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~----~d------g~i~vwd~~~~ 189 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGS----TD------RTLKVWNAETG 189 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEE----TT------SCEEEEETTTT
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEe----CC------CeEEEEECCcC
Confidence 44556699999999999999999999999999997 78899999998 56898876 45 69999999999
Q ss_pred CCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCC
Q 011970 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSH 249 (474)
Q Consensus 172 ~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D 249 (474)
++... +. .+...+..++|+ ++.|++|+.|++|++||+.+++++.++. ...|.+++| .+..++++ +.|
T Consensus 190 ~~~~~---~~-~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~---~~d 258 (445)
T 2ovr_B 190 ECIHT---LY-GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSG---AYD 258 (445)
T ss_dssp EEEEE---EC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEE---ETT
T ss_pred cEEEE---EC-CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEE---cCC
Confidence 86432 22 234556688885 4689999999999999999999998886 468999999 56677776 447
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
++|++||+++++++.++.+|...+.+++| ++..+++++.|++|++||+++++++..+.+|...+.++.+ ++++|+
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 333 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILV 333 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEE
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEE
Confidence 99999999999999999999999999998 5788999999999999999999999999999999988766 567899
Q ss_pred EEc-CCcEEEEeCC-CcEEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~g---H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+++ |++|++||++ |+++.++.+ |... |.+++| ++++|++++. ||+|+|||+.+|+++
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~--~~~~l~s~~~-----------dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQF--NKNFVITSSD-----------DGTVKLWDLKTGEFI 395 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSC-----EEEEEE--CSSEEEEEET-----------TSEEEEEETTTCCEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCC-----EEEEEE--CCCEEEEEeC-----------CCeEEEEECCCCcee
Confidence 998 9999999994 999999997 5554 788888 4789999987 999999999999999
Q ss_pred EEec-----CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc----EEEccC
Q 011970 405 AKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 474 (474)
Q Consensus 405 ~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt----VklWd~ 474 (474)
.++. +|.. .|++++|+|+|..||+|+.||+ |.+||.
T Consensus 396 ~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 396 RNLVTLESGGSGG----------------------------------VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp EEEEECTTGGGTC----------------------------------EEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred eeeeccccCCCCc----------------------------------eEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 9993 4543 8999999999999999999998 999984
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=357.45 Aligned_cols=277 Identities=12% Similarity=0.129 Sum_probs=235.2
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCC-----------------CceEEEEEEeeCCCEEEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSP-----------------DEVIRSLFYNKNNDSLITV 147 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~-----------------~~~i~sv~fspdg~~Lis~ 147 (474)
|...|..+.|+ |++||+++ ++++++|+..+|+++..+.+.. ...|++++|+|||+.|+++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 55566666666 99999987 7899999999999999987532 1249999999999999997
Q ss_pred EeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C
Q 011970 148 SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 226 (474)
Q Consensus 148 S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~ 226 (474)
+ .| ++++|||+.++++.. .+. +|...+.+++|+ |+|++|++++.|++|+|||+.++++..++. .
T Consensus 142 ~----~d------~~i~iwd~~~~~~~~---~~~-~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 142 A----ED------RLIRIWDIENRKIVM---ILQ-GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp E----TT------SCEEEEETTTTEEEE---EEC-CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred c----CC------CeEEEEECCCCcEEE---EEc-cCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 6 55 699999999887633 222 245667799998 799999999999999999999999988886 5
Q ss_pred CcEEEEEEcC-C-ceEEEEecCCCCccEEEEecCCCeEEEEE-------eecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 227 KHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 227 ~~V~~vafSp-g-~~la~~s~~s~D~tIkLWdi~tG~~L~tl-------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
..|..++|+| + .+++++ +.|++|+|||+++|+++..+ .+|...+.+|+|+ |++..|++++.|++|+|
T Consensus 207 ~~v~~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp SCEEEEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEE
Confidence 6899999998 4 455554 45899999999999999888 5788899999997 67888999999999999
Q ss_pred EECCC------------CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeE
Q 011970 298 LDVRN------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 363 (474)
Q Consensus 298 WDv~t------------g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~s 363 (474)
||+++ +.|..++.+|...|.+++|+|++++|+|++ |++|++||.. |+++.++.+|... |.+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~-----v~~ 357 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VIS 357 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC-----EEE
Confidence 99986 456677889999999999999999999999 9999999995 9999999999987 789
Q ss_pred EEECC------CCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 364 IYITS------DQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 364 vafSp------Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++|+| ++++||||+. ||+|||||+.
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~-----------Dg~i~iW~~~ 388 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSG-----------DCKARIWKYK 388 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEET-----------TSEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECC-----------CCcEEECccc
Confidence 99886 7999999987 9999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=351.83 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=220.6
Q ss_pred ccEEEEeeCCCeEEeeeccc-------cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc
Q 011970 98 RDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~t-------g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
+++||+++.|++|++|++.+ ++++.+|.+ |...|.+++|+|+|..|+++| .| ++++|||+++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~s----~D------~~v~lwd~~~ 107 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSS----WD------KTLRLWDLRT 107 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEEE----TT------SEEEEEETTS
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEEc----CC------CcEEEEECCC
Confidence 78999999999999999864 467788887 778999999999999999976 55 6999999999
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-----CCcEEEEEEcCC--------
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKISPG-------- 237 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-----~~~V~~vafSpg-------- 237 (474)
|++... +. +|...+.+|+|+ |||++|++++.|++|+|||+. +.+...+. ...|.+++|+|.
T Consensus 108 ~~~~~~---~~-~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 108 GTTYKR---FV-GHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp SCEEEE---EE-CCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred CcEEEE---Ec-CCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccC
Confidence 987432 22 245667799998 799999999999999999997 44444432 457999999985
Q ss_pred ---ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccC
Q 011970 238 ---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEF 313 (474)
Q Consensus 238 ---~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~ 313 (474)
..++++ +.|++|+||| .+++++.++.+|...+.+++|+ |++.+|++++.|++|+|||+.+ +.+...+. +.
T Consensus 182 ~~~~~l~s~---~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~ 255 (343)
T 2xzm_R 182 PFAPYFASV---GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYPQREFD-AG 255 (343)
T ss_dssp SSCCEEEEE---ETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CS
T ss_pred CCCCEEEEE---cCCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCCCcccceeec-CC
Confidence 366665 4589999999 5779999999999999999998 6788899999999999999954 44444442 44
Q ss_pred CceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEE--Eec-----------cCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT--SFE-----------DHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~--tl~-----------gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
..|.+++|+|+++++++++|++|+|||+. ++++. +++ +|... |++++|+|||++||+|+.
T Consensus 256 ~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~sg~~- 329 (343)
T 2xzm_R 256 STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-----CTSLAWNALGKKLFAGFT- 329 (343)
T ss_dssp SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-----EEEEEECSSSCCEEEEET-
T ss_pred CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-----eEEEEECCCCCeEEEecC-
Confidence 56999999999999987779999999994 66543 555 66665 789999999999999987
Q ss_pred CCccccccCCCCeEEEEeCCCCe
Q 011970 380 EPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
||+|+|||+.+|+
T Consensus 330 ----------Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 330 ----------DGVIRTFSFETSA 342 (343)
T ss_dssp ----------TSEEEEEEEEEEE
T ss_pred ----------CceEEEEEEEccC
Confidence 9999999987764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=352.44 Aligned_cols=306 Identities=13% Similarity=0.074 Sum_probs=241.5
Q ss_pred eeccccceeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEE
Q 011970 113 FSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (474)
Q Consensus 113 W~~~tg~~l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V 191 (474)
|+..+.+.++++.+ |...|.+++|+|+| +.|++++ .| .+++||++..++....+.+. ++...+..+
T Consensus 58 ~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~----~d------g~i~iwd~~~~~~~~~~~~~--~h~~~v~~~ 124 (383)
T 3ei3_B 58 RSLKSYKLHRTASP-FDRRVTSLEWHPTHPTTVAVGS----KG------GDIILWDYDVQNKTSFIQGM--GPGDAITGM 124 (383)
T ss_dssp HHHTTCEEEEEECC-CSSCEEEEEECSSCTTEEEEEE----BT------SCEEEEETTSTTCEEEECCC--STTCBEEEE
T ss_pred ccccccceEEeccC-CCCCEEEEEECCCCCCEEEEEc----CC------CeEEEEeCCCcccceeeecC--CcCCceeEE
Confidence 34455667778886 77899999999999 8999976 44 68999999988864321111 245667799
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-----CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-----~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
+|+|.++++|++++.|++|+|||+.+ .++..+.. ..|.+++|+| +..|+++ +.|++|++||+ +++++.+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~-~~~~~~~ 199 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATG---DSTGRLLLLGL-DGHEIFK 199 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEE---ETTSEEEEEET-TSCEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEE---CCCCCEEEEEC-CCCEEEE
Confidence 99943889999999999999999985 55555542 5699999998 5555555 45799999999 6899999
Q ss_pred EeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCC----CceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEE
Q 011970 266 FYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN----AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAV 338 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~t----g~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIkl 338 (474)
+.+|...+.+++|+ |++. .+++++.|++|+|||+++ ++++..+ +|...|.+++|+| +|++|++++ |++|+|
T Consensus 200 ~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 200 EKLHKAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EECSSSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred eccCCCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 99999999999998 5566 788889999999999998 7787776 6999999999999 999999999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 339 WNFR-GELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~--~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
||++ ++++.++.+|...... ..+ .+.|+|++.+++.+.. ++.+.+++.|++|+|||+.+|+++.++.+|.. .
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~s--~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~--~ 352 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPI-KATWHPMYDLIVAGRY--PDDQLLLNDKRTIDIYDANSGGLVHQLRDPNA--A 352 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCC-CCEECSSSSEEEEECB--CCTTTCTTCCCCEEEEETTTCCEEEEECBTTB--C
T ss_pred EECCCCccccccccccccccccccce-EEeccCCCCceEEEec--CCcccccCCCCeEEEEecCCCceeeeecCCCC--C
Confidence 9995 9998888877632110 012 2456666665554432 22222456799999999999999999998642 0
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..|..++|+|||+.||+|+ |++|+|||.
T Consensus 353 ------------------------------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 353 ------------------------------GIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ------------------------------SCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ------------------------------ceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 1677789999999999998 999999984
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=411.24 Aligned_cols=316 Identities=12% Similarity=0.177 Sum_probs=275.1
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|...|..+.|+ +.++++++.||++++|+..+++++..+.+ |...|.+++|+|+|+.|++++. | ++++
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~s~s~----d------g~v~ 907 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSFLTASD----D------QTIR 907 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC-CccceEEEEECCCCCEEEEEeC----C------CeEE
Confidence 56677777777 99999999999999999999999999997 7789999999999999999773 3 3555
Q ss_pred EeEe----------------------------------------------------------------------------
Q 011970 165 IEYI---------------------------------------------------------------------------- 168 (474)
Q Consensus 165 iw~i---------------------------------------------------------------------------- 168 (474)
+|++
T Consensus 908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i 987 (1249)
T 3sfz_A 908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987 (1249)
T ss_dssp EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence 5553
Q ss_pred ---ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEe
Q 011970 169 ---RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFN 244 (474)
Q Consensus 169 ---~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s 244 (474)
.+|+... .+. .|...+..++|+ |||++|++++.|++|++||+.+++++.... ...|.+++|+|++.+++++
T Consensus 988 ~d~~~~~~~~---~~~-~h~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 988 IELPNNRVFS---SGV-GHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp EETTTTSCEE---ECC-CCSSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred EEcCCCceee---ecc-cCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 3333211 011 234556789998 799999999999999999999999875443 5789999999999888874
Q ss_pred cCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCC
Q 011970 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 324 (474)
Q Consensus 245 ~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd 324 (474)
.|++|++||+.+|+++.++.+|...+.+++|+ |++..+++++.|++|+|||+.+++++.++.+|...|.+++|+||
T Consensus 1063 ---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A 1063 ---FDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp ---SSSEEEEEETTTTCCCEEEECCSSCCCCEEEC-SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred ---CCCcEEEEECCCCceeEEEcccCCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCC
Confidence 47899999999999999999999999999998 67888999999999999999999999999999999999999999
Q ss_pred CcEEEEEc-CCcEEEEeCC-CcEEEEe---------ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 325 NQLFLTFR-NRTVAVWNFR-GELVTSF---------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~-G~ll~tl---------~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|++|++++ |++|+|||+. |+++.++ .+|..+ |.+++|||||++|+++ +|+|
T Consensus 1139 g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~fs~dg~~l~s~-------------~g~v 1200 (1249)
T 3sfz_A 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-----VTDVCFSPDSKTLVSA-------------GGYL 1200 (1249)
T ss_dssp SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC-----CCEEEECTTSSCEEEE-------------SSSE
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCce-----EEEEEECCCCCEEEEC-------------CCeE
Confidence 99999999 9999999995 9988776 678876 6899999999999986 5899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++||+.+|+++.++.+|.. .|++++|+|||+.|++++.||+|++|+
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~----------------------------------~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGT----------------------------------NLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSC----------------------------------CCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred EEEECCCCceeeeeeccCC----------------------------------cccEEEECCCCCEEEEecCCcEEEEEe
Confidence 9999999999999999985 789999999999999999999999998
Q ss_pred C
Q 011970 474 N 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 1247 l 1247 (1249)
T 3sfz_A 1247 V 1247 (1249)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=334.22 Aligned_cols=278 Identities=13% Similarity=0.149 Sum_probs=236.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|..+.|+ +++||+++.||++++|+..+++++..+.+ |...|.+++|+|+|+.|++++ .| .+++
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~----~d------~~i~ 90 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSAS----DD------KTLK 90 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEEC----CC------CEEE
Confidence 44455555555 89999999999999999999999999997 778899999999999999976 55 6999
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLL 241 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la 241 (474)
||++.++++... +. .+...+..++|+ |+|++|++|+.|++|++||+.+++++.++. ...|.+++|+|+ ..++
T Consensus 91 vwd~~~~~~~~~---~~-~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 91 IWDVSSGKCLKT---LK-GHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EEETTTCCEEEE---EE-CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcEEEE---Ec-CCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 999999987432 22 245567789998 799999999999999999999999999886 457999999984 5555
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE---
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--- 317 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~--- 317 (474)
++ +.|++|++||+++++++.++. .+...+..++|+ |++..+++++.|++|+|||+++++++..+.+|...+.
T Consensus 166 ~~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (312)
T 4ery_A 166 SS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241 (312)
T ss_dssp EE---ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCC
T ss_pred EE---eCCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEE
Confidence 55 458999999999999999886 456678899997 6788899999999999999999999999888876443
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
...+.+++++|++++ |++|++||++ +++++++++|... |.+++|+|++++|++++. +.|++|+|
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l~s~~~---------~~d~~i~~ 307 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-----VISTACHPTENIIASAAL---------ENDKTIKL 307 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECSSSSEEEEEEC---------TTTCCEEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-----EEEEeecCcCCceEEEEc---------cCCccEEE
Confidence 223448899999999 9999999995 9999999999987 789999999999999873 34999999
Q ss_pred EeC
Q 011970 396 SSI 398 (474)
Q Consensus 396 Wdi 398 (474)
|+.
T Consensus 308 W~~ 310 (312)
T 4ery_A 308 WKS 310 (312)
T ss_dssp EEC
T ss_pred ecC
Confidence 985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=350.73 Aligned_cols=312 Identities=13% Similarity=0.111 Sum_probs=254.6
Q ss_pred EEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc
Q 011970 93 EIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 93 ~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
.+.|+ ++.||+++.||++++|+..+++...++.+ + +.+...+|+|+|+.|++++ .| ..++||++..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~----~d------g~i~iwd~~~ 128 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-A-DYTAVDTAKLQMRRFILGT----TE------GDIKVLDSNF 128 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-C-CEEEEEEECSSSCEEEEEE----TT------SCEEEECTTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-C-CceEEEEEecCCCEEEEEE----CC------CCEEEEeCCC
Confidence 45555 99999999999999999999999888875 4 6677778999999999976 45 6899999988
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCC
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSS 247 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s 247 (474)
+++.. .+. .|...+..++|+ |+|++|++++.|++|+|||+.+++++.++. ...|.+++|+| +.+|+++ +
T Consensus 129 ~~~~~---~~~-~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~ 200 (420)
T 3vl1_A 129 NLQRE---IDQ-AHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA---S 200 (420)
T ss_dssp CEEEE---ETT-SSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE---E
T ss_pred cceee---ecc-cccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE---c
Confidence 87632 222 345677799998 799999999999999999999999888875 46899999998 5556655 4
Q ss_pred CCccEEEEecCCCeEEEEEee---cCcceeEEEEEe--------------------cCCCeEEEEeCCCcEEEEECCCCc
Q 011970 248 SHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIE--------------------QFNEKLLVKQENENLQILDVRNAE 304 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~---h~~~v~~V~F~~--------------------~~~~~ll~~~~D~tIkIWDv~tg~ 304 (474)
.|++|++||+++|+++.++.. |...+..++|.+ |++..+++++.|++|+|||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 589999999999999999985 455667777643 456678888999999999999998
Q ss_pred eEEe-ccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 305 LMEV-SRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 305 ~~~~-l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
.+.. ..+|...|.+++|+|+++ +|++++ |++|++||++ ++ ++.++.+|... .|+.++ +|+|++|++++.
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~-~~~~~~l~s~~~- 354 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT----PINNVY-FAAGALFVSSGF- 354 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS----CEEEEE-EETTEEEEEETT-
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC----CceEEE-eCCCCEEEEecC-
Confidence 7765 456889999999999999 999999 9999999995 65 48888885543 267775 468899999876
Q ss_pred CCccccccCCCCeEEEEeCCCCe---------EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 380 EPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
|++|+|||+.+++ ....+.+|.. .|.+
T Consensus 355 ----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~ 390 (420)
T 3vl1_A 355 ----------DTSIKLDIISDPESERPAIEFETPTFLVSNDD----------------------------------AVSQ 390 (420)
T ss_dssp ----------TEEEEEEEECCTTCCSCEECTTSCEEECCSSC----------------------------------CCCE
T ss_pred ----------CccEEEEeccCCCCCccceeccCccEEccCCc----------------------------------ceEE
Confidence 9999999987642 2223334432 8999
Q ss_pred EEEcCCCC---EEEEEcCCCcEEEccC
Q 011970 451 LFYDEERN---EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 451 lafSpDg~---~LaSgs~DgtVklWd~ 474 (474)
++|+|||+ .|++.+.+|.+++|++
T Consensus 391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 391 FCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred EEEccCCCCcceEEEEcCCceEEEEec
Confidence 99999999 7777888999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=334.18 Aligned_cols=298 Identities=14% Similarity=0.148 Sum_probs=243.8
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk 199 (474)
+...|.+ |.+.|.+++|+|+|+.|++++ .| ..++||++.+|++... +. .+...+.+++|+ |+|+
T Consensus 24 ~~~~l~~-h~~~v~~~~~s~~~~~l~~~~----~d------g~i~vwd~~~~~~~~~---~~-~h~~~v~~~~~~-~~~~ 87 (369)
T 3zwl_B 24 KAIKLTG-HERPLTQVKYNKEGDLLFSCS----KD------SSASVWYSLNGERLGT---LD-GHTGTIWSIDVD-CFTK 87 (369)
T ss_dssp EEEEEEC-CSSCEEEEEECTTSCEEEEEE----SS------SCEEEEETTTCCEEEE---EC-CCSSCEEEEEEC-TTSS
T ss_pred ccEEEEE-eeceEEEEEEcCCCCEEEEEe----CC------CEEEEEeCCCchhhhh---hh-hcCCcEEEEEEc-CCCC
Confidence 3445776 889999999999999999976 44 5899999999987432 22 245567799998 7999
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecC--CCCccEEEEecCCCe-----------EEE
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRS--SSHVPLKILSIEDGT-----------VLK 264 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~--s~D~tIkLWdi~tG~-----------~L~ 264 (474)
+|++++.|++|+|||+.+++++.++. ...|.+++|+| +..++++... ..++.|++||+.+++ .+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 99999999999999999999998886 56899999998 5555554321 122899999998874 344
Q ss_pred EEeecCc--ceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 265 VFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 265 tl~~h~~--~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.+..|.+ .+..++|+ |++..+++++.|++|++||+++ ++++..+..|...|.+++|+|++++|++++ |++|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 5555655 88999997 5678888899999999999999 788899999999999999999999999999 99999999
Q ss_pred CC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc---cccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 341 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ---WMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 341 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~---~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
++ ++++..+. |... +..++|+|+|++|++++..+.... ........|++||+.+++++.++.+|..
T Consensus 247 ~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 316 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCP-----LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG---- 316 (369)
T ss_dssp TTTCCEEEEEE-CSSC-----EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS----
T ss_pred CCCCceeeeec-CCCC-----ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC----
Confidence 95 99999998 3333 789999999999999876110000 0000011899999999999999999986
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++++|+|||+.||||+.||+|+||+.
T Consensus 317 ------------------------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 317 ------------------------------PLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ------------------------------CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ------------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999973
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=350.95 Aligned_cols=310 Identities=14% Similarity=0.164 Sum_probs=256.0
Q ss_pred cccc-EEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 87 KRTK-VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 87 ~~~~-V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
|..+ +..+.+.+++||+++.||+|++||+.+++++.++.+ |...|.+++|+|++ .|++++ .| ++++|
T Consensus 120 h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s----~d------g~i~v 187 (464)
T 3v7d_B 120 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGS----TD------RTVRV 187 (464)
T ss_dssp CSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT-EEEEEE----TT------SCEEE
T ss_pred CCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC-EEEEEe----CC------CCEEE
Confidence 4444 355666799999999999999999999999999997 78999999999999 888866 45 69999
Q ss_pred eEeccCCCCCccceeeeccccCceEEEEeC-CCCeEEEEecCCCcEEEeecCCCeE-----------------------E
Q 011970 166 EYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------L 221 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-~nGk~LaS~s~D~tiKlWdl~tg~~-----------------------l 221 (474)
|++.+|++.. .+. .|...+..++|++ +++++|++++.|++|++||+.+++. +
T Consensus 188 wd~~~~~~~~---~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 188 WDIKKGCCTH---VFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EETTTTEEEE---EEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EECCCCcEEE---EEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 9999998643 222 2455677888874 5889999999999999999998763 3
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 011970 222 YSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 299 (474)
Q Consensus 222 ~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWD 299 (474)
.++.+ ..|.++... +..++++ +.|++|++||+++++++.++.+|...+.+++|+ |++..+++++.|++|+|||
T Consensus 264 ~~~~~~~~~v~~~~~~-~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGH-GNIVVSG---SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEECCCSSCEEEEEEE-TTEEEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEE
T ss_pred EEccCccceEEEEcCC-CCEEEEE---eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEE
Confidence 34443 456666332 5666766 457999999999999999999999999999998 5788999999999999999
Q ss_pred CCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 300 VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 300 v~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
+++++++.++.+|...|.+++|+ +++|++++ |++|++||++ ++....+. |... +..++|+|+|++|++++
T Consensus 339 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 339 LENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNL-----SAITTFYVSDNILVSGS 410 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTC-----CCEEEEEECSSEEEEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCC-----ccEEEEEeCCCEEEEec
Confidence 99999999999999999999997 57899988 9999999995 77766664 3332 56799999999999975
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 456 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD 456 (474)
|++|+|||+.+|+++++ +.+|.. .|++|+|+ +
T Consensus 411 ------------dg~i~iwd~~~g~~~~~~~~~~~~----------------------------------~v~~v~~~-~ 443 (464)
T 3v7d_B 411 ------------ENQFNIYNLRSGKLVHANILKDAD----------------------------------QIWSVNFK-G 443 (464)
T ss_dssp ------------TTEEEEEETTTCCEEESCTTTTCS----------------------------------EEEEEEEE-T
T ss_pred ------------CCeEEEEECCCCcEEehhhccCCC----------------------------------cEEEEEec-C
Confidence 89999999999999986 666664 89999998 4
Q ss_pred CCEEEEEcCCCcEEEc
Q 011970 457 RNEIYTGNRHGLVHVW 472 (474)
Q Consensus 457 g~~LaSgs~DgtVklW 472 (474)
+..+++++.||.+.+|
T Consensus 444 ~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCeEEEE
Confidence 4566677778876554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=334.96 Aligned_cols=279 Identities=9% Similarity=0.100 Sum_probs=226.6
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccccc-----eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~-----~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|.+|+|+ +++|||+|.||+|++||+.+++ ++++|.+ |...|.+++|+|||+.|++++ .|
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s~~----~d---- 107 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQFALSGS----WD---- 107 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT----
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCCEEEEEc----cc----
Confidence 44455555555 5799999999999999987654 6778886 889999999999999999976 45
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-c--CCcEEEEEEc
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKHVQEIKIS 235 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-~--~~~V~~vafS 235 (474)
..+++|+...+.... .+. .+...+..+.|+ +++++|++++.|+.+++||+......... . ...|..++|+
T Consensus 108 --~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 108 --GTLRLWDLTTGTTTR---RFV-GHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp --SEEEEEETTTTEEEE---EEE-CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred --ccceEEeecccceee---eec-CCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence 589999987766522 111 123344467786 79999999999999999998776544332 2 4689999999
Q ss_pred CC---ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc
Q 011970 236 PG---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 312 (474)
Q Consensus 236 pg---~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h 312 (474)
++ ..++++ +.|++|++||+++++++.++.+|...|.+|+|+ |++..|++++.|++|+|||+++++++..+.++
T Consensus 181 ~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 181 PNSSNPIIVSC---GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp SCSSSCEEEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred cCCCCcEEEEE---cCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 63 334444 558999999999999999999999999999997 67888888999999999999999999888766
Q ss_pred CCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec---------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 313 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE---------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~---------gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
..+.+++|+|++.+++++.|++|+|||++ +.++.++. +|... |++++|+|||++||||+.
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~---- 326 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----CTSLAWSADGQTLFAGYT---- 326 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-----EEEEEECTTSSEEEEEET----
T ss_pred -ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-----EEEEEECCCCCEEEEEeC----
Confidence 47999999999998877779999999996 77777665 45554 799999999999999987
Q ss_pred cccccCCCCeEEEEeCCCCe
Q 011970 383 DQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~ 402 (474)
||+|+|||+.||+
T Consensus 327 -------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 327 -------DNLVRVWQVTIGT 339 (340)
T ss_dssp -------TSCEEEEEEEC--
T ss_pred -------CCEEEEEeCCCcC
Confidence 9999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=374.73 Aligned_cols=304 Identities=12% Similarity=0.161 Sum_probs=240.7
Q ss_pred eEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee-eccccCceEEEEeCCCCe
Q 011970 122 CFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 122 ~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~-~~~~~~~~~V~Fs~~nGk 199 (474)
..|++ |.+.|++|+|+|++ +.|+|+| .| ++++||++..++...+..... .+|...+..|+|+ |||+
T Consensus 376 ~~l~~-H~~~V~~v~~~~~~~~~l~s~s----~D------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~ 443 (694)
T 3dm0_A 376 GTMRA-HTDMVTAIATPIDNADIIVSAS----RD------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQ 443 (694)
T ss_dssp EEEEC-CSSCEEEEECCTTCCSEEEEEE----TT------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSS
T ss_pred hhccc-CCceeEEEEecCCCCCEEEEEe----CC------CcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCC
Confidence 46776 88999999999985 6888876 55 699999997655322211111 1356678899998 7999
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEE----eecCcc
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF----YHLLHR 272 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl----~~h~~~ 272 (474)
+|++|+.|++|||||+.+++++.++. ...|.+|+||| +..|+++ +.|++|+|||+.. .+..++ .+|...
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTLG-ECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECTTS-CEEEEECSSTTSCSSC
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEECCC-CcceeeccCCCCCCCc
Confidence 99999999999999999999998885 46799999998 5566665 4589999999865 444444 357788
Q ss_pred eeEEEEEecCC-CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 273 NKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 273 v~~V~F~~~~~-~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
+.+++|++... ..+++++.|++|+|||++++++..++.+|...|++++|+|+|++|+|++ |++|+|||+. |+++.++
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 99999985321 4678889999999999999999999999999999999999999999999 9999999995 9999998
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
+.|.. |.+++|+||+.+|++++ |+.|+|||+.+++++.++..|...... .+. ..+
T Consensus 600 ~~~~~------v~~~~~sp~~~~l~~~~------------~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~---~~~--- 654 (694)
T 3dm0_A 600 EANSV------IHALCFSPNRYWLCAAT------------EHGIKIWDLESKSIVEDLKVDLKAEAE-KAD---NSG--- 654 (694)
T ss_dssp BCSSC------EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred cCCCc------EEEEEEcCCCcEEEEEc------------CCCEEEEECCCCCChhhhccccccccc-ccc---ccc---
Confidence 87643 78999999999999875 778999999999999999876530000 000 000
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.....+..-.|++|+|||||+.|+||+.||+|+||++
T Consensus 655 --------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 655 --------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred --------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 0000112226899999999999999999999999985
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=339.87 Aligned_cols=288 Identities=12% Similarity=0.177 Sum_probs=237.4
Q ss_pred eEeecCCCceEEEEEEeeC---CC-EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCC
Q 011970 122 CFLNVSPDEVIRSLFYNKN---ND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 122 ~~l~g~~~~~i~sv~fspd---g~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~ 196 (474)
..+..+|.+.|.+|+|+|+ ++ .+++++ +++ .++||++.+++....+..+.. .+...+..++|+ |
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~---~~~-------~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 79 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATV---GSN-------RVTLYECHSQGEIRLLQSYVDADADENFYTCAWT-Y 79 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEE---ETT-------EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-E
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEEC---CCC-------EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-c
Confidence 3455468899999999984 55 333322 243 799999998876443332322 133457789998 6
Q ss_pred C----CeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-Cc-eEEEEecCCCCccEEEEecCCCeEEEEE--
Q 011970 197 N----GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVF-- 266 (474)
Q Consensus 197 n----Gk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl-- 266 (474)
+ |++|++|+.|++|+|||+.+++++.++. ...|.+++|+| ++ .|+++ +.|++|+|||+++++++..+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV---SKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE---eCCCeEEEEEeecCeEEEEecc
Confidence 7 7899999999999999999999998886 46899999998 54 55554 45899999999999999999
Q ss_pred -eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc----------------------------cCCceE
Q 011970 267 -YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----------------------------EFMTPS 317 (474)
Q Consensus 267 -~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~----------------------------h~~~v~ 317 (474)
.+|...+..++|+ |++..|++++.|++|++||+++++++..+.. |...|.
T Consensus 157 ~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 157 VEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred cccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 6888999999998 5788899999999999999999887654443 999999
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--------------EEEEeccCCCCcCCCCeeEEEECCC--CCEEEEEecC
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFR-GE--------------LVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKA 379 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~-G~--------------ll~tl~gH~~~~~~~~v~svafSpD--g~~LaS~s~~ 379 (474)
+++|+ +++|++++ |++|++||+. ++ ++.++.+|... |+.++|+|| |++|++++.
T Consensus 236 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~l~~~~~- 307 (366)
T 3k26_A 236 CVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD-----IWYMRFSMDFWQKMLALGNQ- 307 (366)
T ss_dssp EEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC-----SSCCCCEECTTSSEEEEECT-
T ss_pred EEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc-----EEEEEEcCCCCCcEEEEEec-
Confidence 99999 77999998 9999999984 54 48899999886 688999999 999999876
Q ss_pred CCccccccCCCCeEEEEeCCCCeE----EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKC----LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 455 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~c----l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp 455 (474)
||+|+|||+.++++ +.++.+|.. ...|++|+|+|
T Consensus 308 ----------dg~i~vwd~~~~~~~~~~~~~~~~~~~--------------------------------~~~v~~~~~s~ 345 (366)
T 3k26_A 308 ----------VGKLYVWDLEVEDPHKAKCTTLTHHKC--------------------------------GAAIRQTSFSR 345 (366)
T ss_dssp ----------TSCEEEEECCSSSGGGCEEEEECCTTC--------------------------------CSCEEEEEECT
T ss_pred ----------CCcEEEEECCCCCCccccceEEccccc--------------------------------CCceEEEEeCC
Confidence 99999999999874 458888841 01899999999
Q ss_pred CCCEEEEEcCCCcEEEccC
Q 011970 456 ERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 456 Dg~~LaSgs~DgtVklWd~ 474 (474)
||+.|++|+.||+|++||.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC
T ss_pred CCCeEEEEeCCCEEEEEEe
Confidence 9999999999999999984
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=321.92 Aligned_cols=278 Identities=13% Similarity=0.196 Sum_probs=239.8
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+.+.+|.+ |.+.|.+++| |+|+.|++++ .| ..++||++..+++.. .+. .+...+..++|+ |+|
T Consensus 9 ~~~~~l~~-h~~~v~~~~~-~~~~~l~s~~----~d------g~v~vw~~~~~~~~~---~~~-~~~~~v~~~~~~-~~~ 71 (313)
T 3odt_A 9 QLSATLKG-HDQDVRDVVA-VDDSKVASVS----RD------GTVRLWSKDDQWLGT---VVY-TGQGFLNSVCYD-SEK 71 (313)
T ss_dssp EEEEEECC-CSSCEEEEEE-EETTEEEEEE----TT------SEEEEEEESSSEEEE---EEE-ECSSCEEEEEEE-TTT
T ss_pred HHHHHhhC-CCCCcEEEEe-cCCCEEEEEE----cC------CcEEEEECCCCEEEE---Eee-cCCccEEEEEEC-CCC
Confidence 77888987 8899999999 9999999976 45 699999998877533 222 234567799998 799
Q ss_pred eEEEEecCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 199 KVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg---~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
++|++++.|++|++||+.+. +++.++. ...|.+++|+ +..++++ +.|++|++|| .++.+..+..|...+
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~---~~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISG---SWDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEE---ETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEE---eCCCCEEEEc--CCcEEEecccCCCce
Confidence 99999999999999998754 5666665 4689999995 5567766 4479999999 789999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 350 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~ 350 (474)
..+.|.++++..+++++.|++|++|| .++++..+.. |...+.+++|+|+++ +++++ |++|++||++ ++++.++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 99999987889999999999999999 5667777776 999999999999999 66777 9999999995 99999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
+|... |.+++|+|||+ |++++. ||+|+|||+.+++++.++.+|..
T Consensus 223 ~~~~~-----i~~~~~~~~~~-l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~------------------ 267 (313)
T 3odt_A 223 GHESF-----VYCIKLLPNGD-IVSCGE-----------DRTVRIWSKENGSLKQVITLPAI------------------ 267 (313)
T ss_dssp CCSSC-----EEEEEECTTSC-EEEEET-----------TSEEEEECTTTCCEEEEEECSSS------------------
T ss_pred cCCce-----EEEEEEecCCC-EEEEec-----------CCEEEEEECCCCceeEEEeccCc------------------
Confidence 99887 79999999995 777776 99999999999999999999985
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++++|+|||+ |++|+.||+|++||.
T Consensus 268 ----------------~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 268 ----------------SIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ----------------CEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ----------------eEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 899999999999 667999999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=355.81 Aligned_cols=345 Identities=12% Similarity=0.058 Sum_probs=275.7
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeecccc----ceeeEeecCCCce-EEEEEEee--CCCEEEEEEeecCCCccc
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEV-IRSLFYNK--NNDSLITVSVYASDNFSS 157 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg----~~l~~l~g~~~~~-i~sv~fsp--dg~~Lis~S~~~s~d~s~ 157 (474)
++..|..+.|+ +++||+++ ++.+++|+++++ +++..+.+ |.+. |.+++|+| ||+.|++++ .|
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~----~d--- 87 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGD----ES--- 87 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEE----TT---
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEec----CC---
Confidence 45566666676 88999998 899999999999 99999997 7788 99999999 999999976 45
Q ss_pred eeeeEEEEeEeccC--------CCCCccceeeeccccCceEEEEeCCCCeEEEEecCC----CcEEEeecCCCeEEEEEc
Q 011970 158 LKCRSTKIEYIRRG--------KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 158 Lk~~~~~iw~i~~G--------~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D----~tiKlWdl~tg~~l~tl~ 225 (474)
.+++||++.+| ++.. .+. .+...+..++|+ |||++|++++.| +.|++|| +++++.++.
T Consensus 88 ---g~v~vw~~~~~~~~~~~~~~~~~---~~~-~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 88 ---GKVIVWGWTFDKESNSVEVNVKS---EFQ-VLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp ---SEEEEEEEEEEGGGTEEEEEEEE---EEE-CCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred ---CEEEEEeCCCCcccccccccccc---hhh-cccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 68999999766 2211 122 134567789998 799999999988 6899998 677888776
Q ss_pred --CCcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCeEEEEEeecCc---ceeEEEEEecC-CCeEEEEeCCCcEEE
Q 011970 226 --DKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---RNKKVDFIEQF-NEKLLVKQENENLQI 297 (474)
Q Consensus 226 --~~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~---~v~~V~F~~~~-~~~ll~~~~D~tIkI 297 (474)
...|.+++|+|++ +++++ +.|++|++||+++++++.++.+|.. .+..++|+ |+ +..+++++.|++|++
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISC 233 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEE
T ss_pred cCCccEEEEEECCCCCcEEEEE---eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEE
Confidence 4689999999865 56665 4589999999999999999999988 99999998 56 788888999999999
Q ss_pred EECCCCceEEec-c---ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC
Q 011970 298 LDVRNAELMEVS-R---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 298 WDv~tg~~~~~l-~---~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~ 371 (474)
||+++++++..+ . +|...|.+++|+ ++++|++++ |++|++||++ ++++.++..|...+. ..+.++.|+ +++
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG-NQQVGVVAT-GNG 310 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG-GCEEEEEEE-ETT
T ss_pred EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc-CceeEEEeC-CCC
Confidence 999999999988 6 899999999999 999999999 9999999995 999999998843222 125778885 999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc---cccccccccccccccccCE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK---KLNKSSYIRSTVGEALEDI 448 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~V 448 (474)
+|++++. |++|++||+.+++++.++.+|......-.. +. .++. ....+|++......+...|
T Consensus 311 ~l~~~~~-----------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 311 RIISLSL-----------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp EEEEEET-----------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCE
T ss_pred eEEEEEC-----------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCce
Confidence 9999986 999999999999999999999851110000 10 1111 1222333221113445588
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 449 TSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 449 ~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++++| ++++.|++++.|++|++|+
T Consensus 376 ~~~~~-~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 376 VSLDN-SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp EEEEC-CSTTCCEEEETTTEEEETT
T ss_pred EEEEE-CCCcEEEEEeCCCCEEEEE
Confidence 89999 6678889999999999997
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=334.01 Aligned_cols=292 Identities=14% Similarity=0.124 Sum_probs=235.5
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC-
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN- 197 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n- 197 (474)
+.+..+..+|.+.|.+++|+|+|+.|++++.....| .+++||++..+++.. ....++...+.+++|+ |+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d------~~v~iw~~~~~~~~~---~~~~~~~~~v~~~~~~-~~~ 77 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT------GVIQLYEIQHGDLKL---LREIEKAKPIKCGTFG-ATS 77 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC------EEEEEEEECSSSEEE---EEEEEESSCEEEEECT-TCC
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC------cEEEEEeCCCCcccc---eeeecccCcEEEEEEc-CCC
Confidence 333333334889999999999998776544221126 799999999888632 2222345567799998 56
Q ss_pred --CeEEEEecCCCcEEEeecCCCe-EEEEEc--CCcEEEEE------EcC-CceEEEEecCCCCccEEEEecCCCe-EEE
Q 011970 198 --GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIK------ISP-GIMLLIFNRSSSHVPLKILSIEDGT-VLK 264 (474)
Q Consensus 198 --Gk~LaS~s~D~tiKlWdl~tg~-~l~tl~--~~~V~~va------fSp-g~~la~~s~~s~D~tIkLWdi~tG~-~L~ 264 (474)
|++|++++.|++|++||+.+++ ++.++. ...|.+++ |+| +..|+++ +.|++|++||+++++ ++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~---~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG---SRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE---ETTSCEEEECTTSCSSCSE
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEE---eCCCeEEEEeCCCCCCcce
Confidence 7999999999999999999988 777775 46799995 566 4566655 458999999999998 788
Q ss_pred EEeecCc----ceeEEEEEe---cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC---CCcEEEEEc-C
Q 011970 265 VFYHLLH----RNKKVDFIE---QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFR-N 333 (474)
Q Consensus 265 tl~~h~~----~v~~V~F~~---~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp---dg~llaS~s-D 333 (474)
++..|.. .+.+++|.+ +++..+++++.|++|++||+++++++.. ..|...|.+++|+| ++++|++++ |
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 8876544 788898633 6788888899999999999999998655 66788999999999 999999999 9
Q ss_pred CcEEEEeCC-CcEEEEec-----cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCC-----
Q 011970 334 RTVAVWNFR-GELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTG----- 401 (474)
Q Consensus 334 ~tIklWd~~-G~ll~tl~-----gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG----- 401 (474)
++|++||++ ++++..+. +|... |.+++|+|+|+ +|++++. ||+|+|||+.++
T Consensus 234 g~i~i~d~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFASVSEKAHKST-----VWQVRHLPQNRELFLTAGG-----------AGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEECCSSC-----EEEEEEETTEEEEEEEEET-----------TSEEEEEEEECCSCC--
T ss_pred CeEEEEeCcCCCcccceeeeccCCCcCC-----EEEEEECCCCCcEEEEEeC-----------CCcEEEeecCCCccccc
Confidence 999999995 66655544 89876 79999999999 8999886 999999999764
Q ss_pred --------------eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EEcCC
Q 011970 402 --------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRH 466 (474)
Q Consensus 402 --------------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La-Sgs~D 466 (474)
+++.++.+|.. .|++++|+|||+.|+ ||+.|
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQ----------------------------------PISSLDWSPDKRGLCVCSSFD 343 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSS----------------------------------CEEEEEECSSSTTEEEEEETT
T ss_pred ccCCCCccccccccceeeccccCCC----------------------------------CeeEEEEcCCCCeEEEEecCC
Confidence 57888888875 899999999999998 89999
Q ss_pred CcEEEccC
Q 011970 467 GLVHVWSN 474 (474)
Q Consensus 467 gtVklWd~ 474 (474)
|+|+|||.
T Consensus 344 ~~i~iw~~ 351 (357)
T 3i2n_A 344 QTVRVLIV 351 (357)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEC
Confidence 99999983
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=336.05 Aligned_cols=299 Identities=15% Similarity=0.170 Sum_probs=240.1
Q ss_pred CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEe----ccCCCCCc---cc
Q 011970 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI----RRGKPDSG---FA 178 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i----~~G~~~~~---~~ 178 (474)
...+.+|+.+.......... |...|.+++|+|+|+ .||+++ .| ..++||++ ..|+.... ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIV-KLDNIVSSTWNPLDESILAYGE----KN------SVARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp ----------CCCEECEEEE-ECSCCSEEEECSSCTTEEEEEE----TB------TEEEEEEEEEC------CEEEEEEE
T ss_pred ccccccccchhhhhheeeee-ccCceEEEEECCCCCcEEEEec----CC------ceEEEEEEecccCCccccccccccc
Confidence 34556787664443333232 557899999999999 999976 44 58999999 88883100 00
Q ss_pred eeee---------ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecC
Q 011970 179 LFES---------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRS 246 (474)
Q Consensus 179 lf~~---------~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~ 246 (474)
.+.+ .+...+..++|+ |||++|++++.|++|+||| .+++++..+. ...|.+++|+| +..|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--- 167 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISM--- 167 (425)
T ss_dssp EEECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEE---
T ss_pred cccccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEE---
Confidence 1111 023467789998 7999999999999999999 7888888886 46899999998 4556655
Q ss_pred CCCccEEEEecCCCeEEEEEeecCcc---------------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc
Q 011970 247 SSHVPLKILSIEDGTVLKVFYHLLHR---------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~~h~~~---------------v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
+.|++|++||+++|+++.++..+... +..++|++ ++.+++++.|+.|++||+.+++++..+.+
T Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 245 (425)
T 1r5m_A 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIG 245 (425)
T ss_dssp ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeecc
Confidence 44789999999999999999987666 89999985 57899999999999999999999999999
Q ss_pred cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 312 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|...|.+++|+|++++|++++ |++|++||++ ++++.++.+|... |.+++|+||| +|++++.
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~-~l~~~~~----------- 308 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS-----IVSASWVGDD-KVISCSM----------- 308 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC-----EEEEEEETTT-EEEEEET-----------
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc-----EEEEEECCCC-EEEEEeC-----------
Confidence 999999999999999999999 9999999995 9999999999876 7899999999 9998876
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 390 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
|++|++||+.+++++.++.+|.. .|++++|+|||+.||+|+.||+|
T Consensus 309 d~~i~i~d~~~~~~~~~~~~~~~----------------------------------~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 309 DGSVRLWSLKQNTLLALSIVDGV----------------------------------PIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp TSEEEEEETTTTEEEEEEECTTC----------------------------------CEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEECCCCcEeEecccCCc----------------------------------cEEEEEEcCCCCEEEEEECCCeE
Confidence 99999999999999999999985 89999999999999999999999
Q ss_pred EEccC
Q 011970 470 HVWSN 474 (474)
Q Consensus 470 klWd~ 474 (474)
++||.
T Consensus 355 ~i~~~ 359 (425)
T 1r5m_A 355 NVYDL 359 (425)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=355.28 Aligned_cols=302 Identities=13% Similarity=0.079 Sum_probs=236.7
Q ss_pred eeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 120 RICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
......+ |+..|.+|+|+| ++.+||+++ .| .+|+|||+..++......+. +|...|.+|+|+|.||
T Consensus 111 ~~~~~~~-~~~~V~~l~~~P~~~~~lasGs----~d------g~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 111 ILQKAAP-FDRRATSLAWHPTHPSTVAVGS----KG------GDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNT 177 (435)
T ss_dssp SCCEEEE-CSSCEEEEEECSSCTTCEEEEE----TT------SCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCT
T ss_pred ecccCCC-CCCCEEEEEEeCCCCCEEEEEe----CC------CEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCC
Confidence 3445555 778899999999 566888866 55 69999999888753322222 3556778999995589
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
++|+|||.|++|||||++++.+...... ..+.+++|+|+ .+|+++ +.|++|+|||++ |+++.++.+|...|
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~i~~wd~~-~~~~~~~~~h~~~v 253 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGNVILLNMD-GKELWNLRMHKKKV 253 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCcEeeeccC-cceeEEEecccceE
Confidence 9999999999999999987665443332 35789999984 555554 568999999985 67888999999999
Q ss_pred eEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEe---ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE
Q 011970 274 KKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 347 (474)
Q Consensus 274 ~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~---l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~ 347 (474)
.+|+|+| ++. .+++++.|++|+|||+++++.... ..+|...|.+++|+|||++|+|++ |++|+|||+. |++..
T Consensus 254 ~~v~~~p-~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 254 THVALNP-CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EEEEECT-TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred EeeeecC-CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 9999984 455 556688999999999999876543 467999999999999999999999 9999999995 99999
Q ss_pred EeccCCCCcCC-CCeeEEEECCCCCEEEEEecCCCccc-cccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCC
Q 011970 348 SFEDHLLWHPD-CNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSS 424 (474)
Q Consensus 348 tl~gH~~~~~~-~~v~svafSpDg~~LaS~s~~~~~~~-~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~ 424 (474)
.+.+|...... ..+..+.|+|++.++++++..+.... +.+..+++|+|||+.+|+++.++.+ |..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~------------ 400 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS------------ 400 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC------------
T ss_pred EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC------------
Confidence 99888753211 11345789999999998875443333 3344567999999999999999864 553
Q ss_pred CCccccccccccccccccccccCEEEE-EEcCCCCEEEEEcCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~sl-afSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.++ +|||||++||||+ |++|+||+.
T Consensus 401 ----------------------~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 401 ----------------------GISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ----------------------CCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred ----------------------cEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 67776 7999999999987 889999984
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.21 Aligned_cols=299 Identities=10% Similarity=0.029 Sum_probs=242.3
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc-eeee-ccccCceEEEEeCCC-
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-LFES-ESLKWPGFVEFDDVN- 197 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~-lf~~-~~~~~~~~V~Fs~~n- 197 (474)
..+|.+ |.+.|.+|+|+| +.|++++ .| .+++||++..++....+. +... .+...+..++|+ |+
T Consensus 9 ~~~~~~-h~~~i~~~~~~~--~~l~s~~----~d------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~ 74 (397)
T 1sq9_A 9 ANAGKA-HDADIFSVSACN--SFTVSCS----GD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QAI 74 (397)
T ss_dssp EEESSC-SSSCEEEEEECS--SEEEEEE----TT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EEE
T ss_pred hhhhhh-hhcCeEEEEecC--CeEEEEc----CC------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-ccc
Confidence 446665 889999999999 7899876 45 699999999888211111 1111 245567799998 68
Q ss_pred ---C---eEEEEecCCCcEEEeecCCCeE-----EEEEc-------CCcEEEEEEc----CC-ce-EEEEecCCCCccEE
Q 011970 198 ---G---KVLTYSAQDSIYKVFDLKNYTM-----LYSIS-------DKHVQEIKIS----PG-IM-LLIFNRSSSHVPLK 253 (474)
Q Consensus 198 ---G---k~LaS~s~D~tiKlWdl~tg~~-----l~tl~-------~~~V~~vafS----pg-~~-la~~s~~s~D~tIk 253 (474)
| ++|++++.|++|++||+.++++ +..+. ...|.+++|+ |+ .. |+++ +.|+.|+
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~---~~dg~i~ 151 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT---DVKGTTY 151 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE---ETTSCEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE---eCCCcEE
Confidence 9 9999999999999999998886 77775 2679999999 84 45 5554 4479999
Q ss_pred EEecCC------CeEEE-----EEee-------cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc---c
Q 011970 254 ILSIED------GTVLK-----VFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---E 312 (474)
Q Consensus 254 LWdi~t------G~~L~-----tl~~-------h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~---h 312 (474)
+||+++ ++++. ++.+ |...+.+++|+ |++ .+++++.|++|+|||+++++++..+.+ |
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 999999 88887 8854 78889999998 556 888889999999999999999999888 9
Q ss_pred ---CCceEEEEEcCCCcEEEEEc-C---CcEEEEeCC-CcEEEEecc-------------CCCCcCCCCeeEEEECCCCC
Q 011970 313 ---FMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFED-------------HLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 313 ---~~~v~sv~Fspdg~llaS~s-D---~tIklWd~~-G~ll~tl~g-------------H~~~~~~~~v~svafSpDg~ 371 (474)
...+.+++|+|++++|++++ | ++|++||+. ++++.++.+ |... |.+++|+|||+
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~ 304 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGE 304 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSS
T ss_pred cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc-----EEEEEECCCCC
Confidence 99999999999999999999 9 999999995 999999999 8876 79999999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec------CCCC-CCCCccccCCCCCCcccccccccccccccccc
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN------ATNC-SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 444 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~------gH~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (474)
+|++++. |++|+|||+.+++++.++. +|.. ...+... ....+
T Consensus 305 ~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------~~~~~ 353 (397)
T 1sq9_A 305 TLCSAGW-----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH--------------------GDSLA 353 (397)
T ss_dssp EEEEEET-----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT--------------------SCBCS
T ss_pred EEEEEeC-----------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccc--------------------ccccc
Confidence 9999986 9999999999999999999 7710 0000000 00001
Q ss_pred ccCEEEEEEcCCC----------CEEEEEcCCCcEEEccC
Q 011970 445 LEDITSLFYDEER----------NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 445 l~~V~slafSpDg----------~~LaSgs~DgtVklWd~ 474 (474)
-..|++++|+||| +.|++|+.||+|++|+.
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 1389999999999 79999999999999983
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=336.66 Aligned_cols=309 Identities=12% Similarity=0.154 Sum_probs=251.3
Q ss_pred eCCCeEEeeeccccceeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee--
Q 011970 105 AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-- 181 (474)
Q Consensus 105 s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~-- 181 (474)
+.++++++|+.++++....+.+ |.+.|.+++|+| +|+.||+++ .| .+++||++..++....+....
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERI-HGGGINTLDIEPVEGRYMLSGG----SD------GVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCC-CSSCEEEEEECTTTCCEEEEEE----TT------SCEEEEECCCCSSSSCEEECEEE
T ss_pred eccCcceeeccccCcceeeeec-cCCcEEEEEEecCCCCEEEEEc----CC------CeEEEEECCCCcccceEeccccc
Confidence 4567899999999999999987 889999999999 999999976 45 689999999888754322111
Q ss_pred -------eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC---c-eEEEEecCCCC
Q 011970 182 -------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG---I-MLLIFNRSSSH 249 (474)
Q Consensus 182 -------~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg---~-~la~~s~~s~D 249 (474)
..+...+..++|+|.++++|++++.|++|++||+.+++++..+. ...+..++|+|. + +++++ +.|
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 165 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVG---TRG 165 (408)
T ss_dssp EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEE---ESS
T ss_pred cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEE---cCC
Confidence 12455677899984488899999999999999999999988886 568999999972 2 55555 447
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCe-EEEEeCCCcEEEEECCCCc-eEEec---------------ccc
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAE-LMEVS---------------RTE 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~-ll~~~~D~tIkIWDv~tg~-~~~~l---------------~~h 312 (474)
+.|++||+++++++.++.+|...+..++|+ |++.+ +++++.|++|+|||+++++ ++..+ .+|
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 899999999999999999999999999998 55664 6678999999999999876 45544 678
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCe-eEEEECCCCCEEEEEecCCCccccccCC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT-NNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v-~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
...|.+++|+|+|++|++++ |++|++||+. ++.+..+.++........+ ..+...+.+.+++ ++.
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------- 312 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VPY----------- 312 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EEE-----------
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Eec-----------
Confidence 89999999999999999999 9999999995 8877666554332111111 2233333444444 444
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 390 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
|++|++||+.+|+++.++.+|.. .|++++|+|||+.|+||+.||+|
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYK----------------------------------TVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSS----------------------------------CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEECcCCcceeeeccCCC----------------------------------eEEEEEEcCCCCEEEEECCCCeE
Confidence 89999999999999999999986 89999999999999999999999
Q ss_pred EEccC
Q 011970 470 HVWSN 474 (474)
Q Consensus 470 klWd~ 474 (474)
++||.
T Consensus 359 ~iw~~ 363 (408)
T 4a11_B 359 LAWVP 363 (408)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99973
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=322.34 Aligned_cols=274 Identities=10% Similarity=0.087 Sum_probs=223.8
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
.+.|+|||+| .||++. | ++|+|||+.+|++...+.+. ++..+|.+|+|+ |+|++||+|+.|++|+
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D------~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----D------NSVYLWSASSGDILQLLQME--QPGEYISSVAWI-KEGNYLAVGTSSAEVQ 92 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----T------TEEEEEETTTCCEEEEEECC--STTCCEEEEEEC-TTSSEEEEEETTSEEE
T ss_pred ceEEEECCCC-EEEEEe-----C------CEEEEEECCCCCEEEEEEec--CCCCeEEEEEEC-CCCCEEEEEECCCcEE
Confidence 4568999987 666532 3 59999999999985532222 345678899998 7999999999999999
Q ss_pred EeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 212 VFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 212 lWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|||+++++++.++.++ .+..+++. +..++++ +.++.+++|+..++ ..+.++.+|...+..+.|. +.+..+++
T Consensus 93 iw~~~~~~~~~~~~~h~~~~~~~~~~-~~~l~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s 167 (318)
T 4ggc_A 93 LWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSG---SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLAS 167 (318)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEE-TTEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred EeecCCceeEEEecCccceEEEeecC-CCEEEEE---ecCCceEeeecCCCceeEEEEcCccCceEEEEEc-CCCCEEEE
Confidence 9999999999988754 45544444 4556655 44789999998876 5678889999999999986 66788888
Q ss_pred EeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEE---EEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCC
Q 011970 289 KQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLF---LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~ll---aS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~ 359 (474)
++.|++|+|||+++++. ......|...|.+++++|++..+ ++++ |++|+|||.+ ++.......+. .
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-~---- 242 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-Q---- 242 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS-C----
T ss_pred EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee-e----
Confidence 99999999999999874 34456788899999999876543 3556 9999999996 66666655443 3
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
+..+.|+|+++.+++++. +.|++|+|||+.+|+++++|+||..
T Consensus 243 -v~~~~~~~~~~~~~~~sg---------~~d~~i~iwd~~~~~~~~~l~gH~~--------------------------- 285 (318)
T 4ggc_A 243 -VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS--------------------------- 285 (318)
T ss_dssp -EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS---------------------------
T ss_pred -eeeeeecccccceEEEEE---------cCCCEEEEEECCCCcEEEEEcCCCC---------------------------
Confidence 689999999999998762 4599999999999999999999996
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|||||++|||||.||+|||||.
T Consensus 286 -------~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 286 -------RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp -------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=363.46 Aligned_cols=292 Identities=13% Similarity=0.123 Sum_probs=246.9
Q ss_pred cccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC
Q 011970 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (474)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~ 142 (474)
+.++..|..|..+..++.+.|+ +..||+++.||+|++||..+|++++++.+ |...|.+++|+|+|+
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-------------~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKN 68 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-------------SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT
T ss_pred cccceeeecCCCceEEEEECCC-------------CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCC
Confidence 4455666666666666555555 99999999999999999999999999996 778999999999999
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC-eEE
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML 221 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg-~~l 221 (474)
.|++++ .| ..++||++.+|+.... +. .+...+..++|+ |+|++|++++.|++|+|||+.++ .+.
T Consensus 69 ~l~~~~----~d------g~i~vw~~~~~~~~~~---~~-~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 69 WIIVGS----DD------FRIRVFNYNTGEKVVD---FE-AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp EEEEEE----TT------SEEEEEETTTCCEEEE---EE-CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred EEEEEe----CC------CeEEEEECCCCcEEEE---Ee-cCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 999976 45 6999999999986432 22 245667799998 79999999999999999999987 666
Q ss_pred EEEc--CCcEEEEEEcC-Cc-eEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEec-CCCeEEEEeCCCcE
Q 011970 222 YSIS--DKHVQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQ-FNEKLLVKQENENL 295 (474)
Q Consensus 222 ~tl~--~~~V~~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~-~~~~ll~~~~D~tI 295 (474)
.++. ...|.+++|+| ++ .++++ +.|++|++||+.+++...++..+. ..+..++|++. ++..+++++.|++|
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEE---eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 6665 46799999998 55 55554 457999999999999988888554 78999999852 67788889999999
Q ss_pred EEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC--
Q 011970 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-- 371 (474)
Q Consensus 296 kIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-- 371 (474)
++||+.+++++.++.+|...|.+++|+|+|++|++++ |++|++||+. ++++.++..|... ++.++|+|+|+
T Consensus 211 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKN 285 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-----EEEEEECTTCGGG
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-----EEEEEEccCCCce
Confidence 9999999999999999999999999999999999999 9999999995 9999999999876 79999999998
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++++++ |+.+.+|++.++..
T Consensus 286 ~~~~~~------------~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 286 YIASGF------------DNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEE------------TTEEEEEECSCCSC
T ss_pred EEEEEe------------CCCEEEEEcCCCCc
Confidence 577665 77888999765443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=331.04 Aligned_cols=236 Identities=13% Similarity=0.179 Sum_probs=201.2
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--CeEEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--g~~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIkLWd 256 (474)
|...|..++|+ |||++||+|+.|++|||||+++ ++++.++. ...|++|+|+| +.+||++ +.|++|+|||
T Consensus 8 h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~---s~D~~v~iWd 83 (297)
T 2pm7_B 8 HNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVMIWK 83 (297)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE---ETTTEEEEEE
T ss_pred CcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE---cCCCEEEEEE
Confidence 55677899998 7999999999999999999975 46778876 46899999985 5677776 4589999999
Q ss_pred cCCCe--EEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCce--EEeccccCCceEEEEEcCC-------
Q 011970 257 IEDGT--VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYE------- 324 (474)
Q Consensus 257 i~tG~--~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~~--~~~l~~h~~~v~sv~Fspd------- 324 (474)
+++|+ ++.++.+|...|.+|+|+|.. +..|++++.|++|+|||++++.. ...+.+|...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 99984 677888899999999998532 67888899999999999998742 4567899999999999997
Q ss_pred ------CcEEEEEc-CCcEEEEeCC-Cc----EEEEeccCCCCcCCCCeeEEEECCCC---CEEEEEecCCCccccccCC
Q 011970 325 ------NQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 325 ------g~llaS~s-D~tIklWd~~-G~----ll~tl~gH~~~~~~~~v~svafSpDg---~~LaS~s~~~~~~~~~~s~ 389 (474)
+++||+++ |++|+|||++ ++ ++.+|++|..+ |++|+|+|++ ++|||+|.
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~-----V~~v~~sp~~~~~~~las~s~----------- 227 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYMASVSQ----------- 227 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc-----eEEEEECCCCCCceEEEEEEC-----------
Confidence 57999999 9999999994 66 78899999988 7999999995 89999987
Q ss_pred CCeEEEEeCCCCe---EEEEe--cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 390 AGSINVSSILTGK---CLAKI--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 390 DgtIklWdi~tG~---cl~tl--~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
|++|+|||+.+++ ....+ .+|.. .|++++|+|||+.||+|+
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPD----------------------------------VLWRASWSLSGNVLALSG 273 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSS----------------------------------CEEEEEECSSSCCEEEEE
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCC----------------------------------cEEEEEECCCCCEEEEEc
Confidence 9999999997753 22334 34443 899999999999999999
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.|++|+||+
T Consensus 274 ~D~~v~lw~ 282 (297)
T 2pm7_B 274 GDNKVTLWK 282 (297)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=332.16 Aligned_cols=285 Identities=9% Similarity=0.049 Sum_probs=240.5
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccc------eeeEeecCCCceEEEEEEeeC----C---CEEEEEEeecCC
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKN----N---DSLITVSVYASD 153 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~------~l~~l~g~~~~~i~sv~fspd----g---~~Lis~S~~~s~ 153 (474)
|..+|.+|.|+.++||+++.||+|++|++.+++ ++..+.+ |...|.+++|+|+ | +.|++++ .
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~----~ 89 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS----F 89 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE----T
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEc----C
Confidence 677788888888899999999999999999998 8889986 7789999999999 9 9999876 4
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeee-cc-----ccCceEEEEeC---CCCeE-EEEecCCCcEEEeecCC------
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFES-ES-----LKWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------ 217 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~-----~~~~~~V~Fs~---~nGk~-LaS~s~D~tiKlWdl~t------ 217 (474)
| .++++|++..++......+... .+ ...+..++|++ |+|++ |++++.|++|++||+.+
T Consensus 90 d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 90 S------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp T------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred C------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 4 5899999998885111111111 12 25677899972 48999 99999999999999998
Q ss_pred CeEEE-----EE---------cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee---c---CcceeEEE
Q 011970 218 YTMLY-----SI---------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---L---LHRNKKVD 277 (474)
Q Consensus 218 g~~l~-----tl---------~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~---h---~~~v~~V~ 277 (474)
++++. ++ +...|.+++|+|++.++++ +.|+.|++||+++++++.++.. | ...+..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG---FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE---CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEE---eCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 76655 55 3567999999986655554 5589999999999999999998 8 89999999
Q ss_pred EEecCCCeEEEEeCC---CcEEEEECCCCceEEeccc-------------cCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 278 FIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 278 F~~~~~~~ll~~~~D---~tIkIWDv~tg~~~~~l~~-------------h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
|+ |++..|++++.| ++|+|||+++++++..+.+ |...|.+++|+|++++|++++ |++|+|||
T Consensus 241 ~~-~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 241 FS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EC-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EC-CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 97 578888889999 9999999999999999998 999999999999999999999 99999999
Q ss_pred CC-CcEEEEec------cC---------------CCCcCCCCeeEEEECCCC----------CEEEEEecCCCccccccC
Q 011970 341 FR-GELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 341 ~~-G~ll~tl~------gH---------------~~~~~~~~v~svafSpDg----------~~LaS~s~~~~~~~~~~s 388 (474)
+. ++++.++. +| ... |++++|+||| ++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~~g~~~~~~~~~~~~l~s~~~---------- 384 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLKKGWRSGMGADLNESLCCVCL---------- 384 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEECTTTSBSTTCTTSCEEEEEET----------
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEeccccccccccccccceEEEecC----------
Confidence 95 99999999 87 655 7999999999 79999987
Q ss_pred CCCeEEEEeCCCCe
Q 011970 389 SAGSINVSSILTGK 402 (474)
Q Consensus 389 ~DgtIklWdi~tG~ 402 (474)
||+|+|||+.+|+
T Consensus 385 -dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 385 -DRSIRWFREAGGK 397 (397)
T ss_dssp -TTEEEEEEEEC--
T ss_pred -CCcEEEEEcCCCC
Confidence 9999999998875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=345.55 Aligned_cols=283 Identities=10% Similarity=0.088 Sum_probs=237.9
Q ss_pred ceEEEEEEeeCCC-EEEEEEeec------CCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 130 EVIRSLFYNKNND-SLITVSVYA------SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 130 ~~i~sv~fspdg~-~Lis~S~~~------s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
+.|.+++|+|+|+ .|++++..| +.| .+++||++..++.......+. +...+..++|+ |||++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s-~~~~~l~ 83 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTD------SSLELWSLLAADSEKPIASLQ--VDSKFNDLDWS-HNNKIIA 83 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCC------CCCEEEESSSGGGCSCSCCCC--CSSCEEEEEEC-SSSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCC------CeEEEEEccCCCCCcEEEEEe--cCCceEEEEEC-CCCCeEE
Confidence 3578899999998 888865444 566 799999998886422112233 34457789998 7999999
Q ss_pred EecCCCcEEEeecCC----CeEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCe------EEE---E
Q 011970 203 YSAQDSIYKVFDLKN----YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT------VLK---V 265 (474)
Q Consensus 203 S~s~D~tiKlWdl~t----g~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~------~L~---t 265 (474)
+++.|++|+|||+.+ .+++.++. ...|.+++|+| +.+|+++ +.|++|+|||+++++ ... .
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG---GNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE---CSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE---cCCCeEEEEECCCCcccccccccccccc
Confidence 999999999999987 35777775 46899999998 4566655 558999999999987 333 3
Q ss_pred EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc------CCceEEEEEcCCC-cEEEEEc-CC---
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-QLFLTFR-NR--- 334 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h------~~~v~sv~Fspdg-~llaS~s-D~--- 334 (474)
+..|...+..++|++..+..+++++.|++|+|||+++++++..+..| ...+.+++|+|++ ++|++++ |+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 46788899999998433567777899999999999999999888776 7899999999997 6899988 88
Q ss_pred cEEEEeCC-C-cEEEEec-cCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 335 TVAVWNFR-G-ELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 335 tIklWd~~-G-~ll~tl~-gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+|++||++ + +++.++. +|... |.+++|+| |+++|++++. |++|+|||+.+++++.++.+|
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~-----------dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQKG-----ILSLDWCHQDEHLLLSSGR-----------DNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSSC-----EEEEEECSSCSSCEEEEES-----------SSEEEEECSSSCCEEEEEECS
T ss_pred eEEEEeCCCCCCCcEEeecCccCc-----eeEEEeCCCCCCeEEEEeC-----------CCCEEEeeCCCCccceeecCC
Confidence 99999995 5 7888998 99876 79999999 9999999987 999999999999999999999
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.. .|++++|+||| +.|++|+.|++|+|||.
T Consensus 305 ~~----------------------------------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 305 GN----------------------------------WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp SS----------------------------------CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CC----------------------------------ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 86 89999999999 89999999999999984
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=339.28 Aligned_cols=273 Identities=11% Similarity=0.117 Sum_probs=231.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
+..|+||++| .||.+. | .+|+|||+.+|++.. +++. ++..+|.+|+|+ |||++||+|+.|++|
T Consensus 108 ~~~l~wS~~n-~lAvgl-----d------~tV~lWd~~tg~~~~---~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v 171 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-----D------NSVYLWSASSGDILQ---LLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEV 171 (420)
T ss_dssp CBCEEECTTS-EEEEEE-----T------TEEEEEETTTCCEEE---EEECCSTTCCEEEEEEC-TTSSEEEEEETTSCE
T ss_pred ceeEEECCCC-EEEEEe-----C------CEEEEEECCCCCEEE---EEEecCCCCcEEEEEEC-CCCCEEEEEECCCeE
Confidence 5679999875 676532 3 599999999999744 3332 345678899998 799999999999999
Q ss_pred EEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEE
Q 011970 211 KVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLL 287 (474)
Q Consensus 211 KlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll 287 (474)
+|||+++++++.++.+ ..|.++++++ ..|+++ +.|+++++||..+. ..+.++.+|...+..+.|. +++..++
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~~-~~l~sg---s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l~ 246 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSG---SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLA 246 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEE
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeCC-CEEEEE---eCCCceeEeeecccceeeEEecccccceeeeeec-CCCCeee
Confidence 9999999999999875 4677777764 456655 45899999998864 5678899999999999987 6788888
Q ss_pred EEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCC-cEEEE--Ec-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 288 VKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYEN-QLFLT--FR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 288 ~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg-~llaS--~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+++.|+.|+|||+.+++. +.....|...|.+++|+|++ .++++ ++ |++|+|||+. |+++..+..|..
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---- 322 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---- 322 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC----
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc----
Confidence 899999999999998763 46678899999999999854 55555 35 9999999995 999999988765
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
+.++.|+|+++.|++++. +.|++|+|||+.+++++++|+||+.
T Consensus 323 --v~~~~~~~~~~~lv~~sg---------~~d~~I~iwd~~~~~~v~~l~gH~~-------------------------- 365 (420)
T 4gga_A 323 --VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS-------------------------- 365 (420)
T ss_dssp --EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS--------------------------
T ss_pred --eeeeeecCCCCeEEEEEe---------cCCCEEEEEECCCCcEEEEEcCCCC--------------------------
Confidence 689999999999998762 3599999999999999999999996
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|||||++|||||.|++|||||.
T Consensus 366 --------~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 366 --------RVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp --------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred --------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=336.25 Aligned_cols=284 Identities=12% Similarity=0.146 Sum_probs=219.1
Q ss_pred cccEEEEEee--ccEEEEeeCCC-------eEEeeeccccce----------eeEeecCCCceEEEEEEeeCCCEEEEEE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSG-------VCAAFSRETNRR----------ICFLNVSPDEVIRSLFYNKNNDSLITVS 148 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dg-------tiklW~~~tg~~----------l~~l~g~~~~~i~sv~fspdg~~Lis~S 148 (474)
..||+++.|+ +.+||+|+.|. .|++|++..+.. -.+|.+ |+..|.++++ +++.|+++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~~~--~~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAIDA--SKGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEEEE--ETTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEEEe--CCCEEEEEE
Confidence 3468888888 89999997654 499999876542 124665 6677887765 566777654
Q ss_pred ee-------cCCCccceeeeEEEEeEeccCCCCC----ccceeee-ccccCceEEEEeCCCCeEEE--EecCCCcEEEee
Q 011970 149 VY-------ASDNFSSLKCRSTKIEYIRRGKPDS----GFALFES-ESLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFD 214 (474)
Q Consensus 149 ~~-------~s~d~s~Lk~~~~~iw~i~~G~~~~----~~~lf~~-~~~~~~~~V~Fs~~nGk~La--S~s~D~tiKlWd 214 (474)
.+ ++.| .++|+|++..++... ...+... .+-.++..|+|| |||++|| +++.|++|||||
T Consensus 91 ~~~~~~l~s~~~d------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 91 NENSTKITQGKGN------KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp CCCHHHHHHTSCC------CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEE
T ss_pred CCCccEEEEecCC------CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeE
Confidence 22 2344 678999986654311 0011111 123457789998 7999875 566899999999
Q ss_pred cCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE--eecCcceeEEEEEecCCCeEEEEeC
Q 011970 215 LKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLHRNKKVDFIEQFNEKLLVKQE 291 (474)
Q Consensus 215 l~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl--~~h~~~v~~V~F~~~~~~~ll~~~~ 291 (474)
++++++++++. ...|.+|+|||++.++++. + +..+++|+..+|+++... .+|...+.+|+|+ |++..+++++.
T Consensus 164 ~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~--s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIETRGEVKDLHFSTDGKVVAYI--T-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEECSSCCCEEEECTTSSEEEEE--C-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCceEEEEEccCCceEEec--c-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEEEec
Confidence 99999999886 5689999999966555543 2 457888888899887543 4688889999998 56778888887
Q ss_pred CC----cEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe-ccCCCCcCCCC
Q 011970 292 NE----NLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLLWHPDCN 360 (474)
Q Consensus 292 D~----tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl-~gH~~~~~~~~ 360 (474)
|+ ++++||+..+.. ...+.+|...|++++|||||++||+++ |++|+|||++ |+++.++ ++|..+
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~----- 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA----- 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC-----
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC-----
Confidence 76 789999988764 345788999999999999999999999 9999999995 9999885 899987
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
|++|+|||||++|||+|. |+|||||||.+.
T Consensus 315 V~~v~fSpdg~~laS~S~-----------D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSA-----------ANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEET-----------TSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeC-----------CCeEEEEEcCCC
Confidence 799999999999999987 999999999643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=325.16 Aligned_cols=299 Identities=13% Similarity=0.081 Sum_probs=234.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccceeeeccccCceEEEEeCCCCeEEEEec
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s 205 (474)
|.+.|.+++|+|||+.|++++ .| ..++||++..++ +.. .+. ++...+..++|+ |+|++|++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~----~d------~~v~i~~~~~~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICP----NN------HEVHIYEKSGNKWVQVH---ELK-EHNGQVTGVDWA-PDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEEC----SS------SEEEEEEEETTEEEEEE---EEE-CCSSCEEEEEEE-TTTTEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEe----CC------CEEEEEeCCCCcEEeee---eec-CCCCcccEEEEe-CCCCEEEEEc
Confidence 678899999999999999854 45 699999998886 322 222 245567799998 7999999999
Q ss_pred CCCcEEEeecCCCeEEEEE----cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe---EEEEE-eecCcceeEE
Q 011970 206 QDSIYKVFDLKNYTMLYSI----SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---VLKVF-YHLLHRNKKV 276 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl----~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~---~L~tl-~~h~~~v~~V 276 (474)
.|++|++||+.++++...+ +...|.+++|+| +.+|+++ +.|+.|++||+++++ ++..+ .+|...+.++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEE---eCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 9999999999999866554 246899999998 5566665 447899999999987 34444 4678899999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEC------------------CCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 277 DFIEQFNEKLLVKQENENLQILDV------------------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv------------------~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
+|+ |++..+++++.|++|++||+ .+++++..+.+|...+.+++|+|++++|++++ |++|+
T Consensus 149 ~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 149 DWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 998 56788888999999999995 47899999999999999999999999999999 99999
Q ss_pred EEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--C--eEEEEecCCCC
Q 011970 338 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--G--KCLAKINATNC 412 (474)
Q Consensus 338 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t--G--~cl~tl~gH~~ 412 (474)
+||++ ++++.++.+|... |.+++|+|||++|+++ . |++|+|||+.+ | +++.++..+..
T Consensus 228 i~d~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~-~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 228 LADADKKMAVATLASETLP-----LLAVTFITESSLVAAG-H-----------DCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEEGGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEE-T-----------TSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEECCCCceeEEEccCCCC-----eEEEEEecCCCEEEEE-e-----------CCeEEEEEccCcCceEEEeeccCcccc
Confidence 99995 9999999999876 7899999999999987 4 99999999987 6 45555444332
Q ss_pred CCCCccccCCCCCCccccccccc---ccc----------ccc-cccccCEEEEE-EcCCC---CEEEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSS---YIR----------STV-GEALEDITSLF-YDEER---NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----------~~~-~~~l~~V~sla-fSpDg---~~LaSgs~DgtVklWd 473 (474)
.+... .....++ +.. ... ..+...|++|+ +++|| +.|+||+.||+|++||
T Consensus 291 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 291 SSQRG-----------LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred chhhh-----------cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 00000 0000000 000 011 13345899998 55888 9999999999999997
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=341.44 Aligned_cols=271 Identities=14% Similarity=0.154 Sum_probs=213.9
Q ss_pred ccEEEEeeCCCeEEeeecccc---ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg---~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
++.-+..+-..+|+||+..++ ++++++++ |+.+|..|+|+||---|+.+ .-|++
T Consensus 53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~---------------------~~~~~- 109 (356)
T 2w18_A 53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCV---------------------ALGNL- 109 (356)
T ss_dssp CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEE---------------------EECSS-
T ss_pred CccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeee---------------------eeccc-
Confidence 555555555679999999999 89999998 87899999999998777663 23554
Q ss_pred CccceeeeccccCceEEEEeCCC----CeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCc
Q 011970 175 SGFALFESESLKWPGFVEFDDVN----GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV 250 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V~Fs~~n----Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~ 250 (474)
+...+.+|+|+ || |++|++++.+ ++||++.+|+++.+ +..+.|+
T Consensus 110 ---------~~~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~~g~lv~s--------------------s~~g~d~ 157 (356)
T 2w18_A 110 ---------EIREIRALFCS-SDDESEKQVLLKSGNI--KAVLGLTKRRLVSS--------------------SGTLSDQ 157 (356)
T ss_dssp ---------SEEEEEEECC-------CCEEEEEEEEE--EEEEEETTTEEEEE--------------------ESSSTTC
T ss_pred ---------cccceEEEEEC-CCccccccEEEeCCCe--EEEEecCCCcEEEe--------------------cccCCCC
Confidence 13456699998 79 9999998844 88998766554433 2234578
Q ss_pred cEEEEec-CCCeEEEEEeecCcceeEEEEEe-c-CCCeEEEEeCCCcEEEEECCCCceEEeccccC---CceEEEEEcCC
Q 011970 251 PLKILSI-EDGTVLKVFYHLLHRNKKVDFIE-Q-FNEKLLVKQENENLQILDVRNAELMEVSRTEF---MTPSAFIFLYE 324 (474)
Q Consensus 251 tIkLWdi-~tG~~L~tl~~h~~~v~~V~F~~-~-~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~---~~v~sv~Fspd 324 (474)
+|++|++ ++|+.+.++.+|...+..++|++ + +++.|++++.|+||||||+++|++++++.+|. ..+..++|+||
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 9999999 67999999999999999999986 3 34677778999999999999999999998654 36777899999
Q ss_pred CcEE------------EEEc-CCcEEEEeCC-CcEEEEe-----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 325 NQLF------------LTFR-NRTVAVWNFR-GELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 325 g~ll------------aS~s-D~tIklWd~~-G~ll~tl-----~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
|+++ +|++ |+|||+||.. |+++.++ .||... +.+.. .+|.++||++.
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-----~lsg~--~sg~~lASgS~------- 303 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-----FLEGD--VKDHCAAAILT------- 303 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC-----EEEEE--EETTEEEEEET-------
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-----eEccc--cCCCEEEEEcC-------
Confidence 9987 5677 9999999995 9998877 477654 23333 34899999987
Q ss_pred ccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 386 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 386 ~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
|+||||||+.+|+|+++|++|.. ..+.+|+|||||++||||+.
T Consensus 304 ----DgTIkIWDl~tGk~l~tL~gH~~---------------------------------~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 304 ----SGTIAIWDLLLGQCTALLPPVSD---------------------------------QHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp ----TSCEEEEETTTCSEEEEECCC-----------------------------------CCCCEEEECSSSSEEEEECT
T ss_pred ----CCcEEEEECCCCcEEEEecCCCC---------------------------------CeEEEEEECCCCCEEEEEEC
Confidence 99999999999999999999985 03446999999999999999
Q ss_pred CCcEEEccC
Q 011970 466 HGLVHVWSN 474 (474)
Q Consensus 466 DgtVklWd~ 474 (474)
|++|||||.
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999983
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=337.20 Aligned_cols=272 Identities=10% Similarity=0.101 Sum_probs=226.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
+.+++|+|+|+.|++++. | ..+++|++.+++.... +.. + ..+....|+ |+|++||+|+.|++|+
T Consensus 59 ~~~~~~s~~g~~l~~~~~----d------~~v~i~d~~~~~~~~~---~~~-~-~~~~~~~~~-~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARL----D------GHDFLFNTIIRDGSKM---LKR-A-DYTAVDTAK-LQMRRFILGTTEGDIK 122 (420)
T ss_dssp CTTCEEEEEETTEEEEEE----T------TEEEEEECCSEETTTT---SCS-C-CEEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred ccceeeeecCCeEEEEEc----C------CcEEEEEecccceeeE---Eec-C-CceEEEEEe-cCCCEEEEEECCCCEE
Confidence 457999999999999774 3 5899999988876432 221 1 222244676 8999999999999999
Q ss_pred EeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 212 VFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|||+++++++..+. ...|.+++|+|+ ..|+++ +.|++|+|||+++|+++.++.+|...+.+++|+ |++..|++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s 198 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNVLS 198 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEE---eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEEEE
Confidence 99999999988864 568999999985 456655 458999999999999999999999999999998 57888999
Q ss_pred EeCCCcEEEEECCCCceEEeccc---cCCceEE---------------------EEEcCCCcEEEEEc-CCcEEEEeCC-
Q 011970 289 KQENENLQILDVRNAELMEVSRT---EFMTPSA---------------------FIFLYENQLFLTFR-NRTVAVWNFR- 342 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~---h~~~v~s---------------------v~Fspdg~llaS~s-D~tIklWd~~- 342 (474)
++.|++|+|||+++++++..+.. |...+.+ ++|+|+|++|++++ |++|++||++
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999999988765 3344444 44579999999999 9999999995
Q ss_pred CcEEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccc
Q 011970 343 GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDE 419 (474)
Q Consensus 343 G~ll~tl~-gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gH~~~~~~~~~ 419 (474)
++.+..+. +|... |.+++|+|+|+ +|++++. ||+|+|||+.++++ +.++.+|..
T Consensus 279 ~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~------- 335 (420)
T 3vl1_A 279 KEQTIQLPSKFTCS-----CNSLTVDGNNANYIYAGYE-----------NGMLAQWDLRSPECPVGEFLINEG------- 335 (420)
T ss_dssp CCEEEEECCTTSSC-----EEEEEECSSCTTEEEEEET-----------TSEEEEEETTCTTSCSEEEEESTT-------
T ss_pred CceeEEcccccCCC-----ceeEEEeCCCCCEEEEEeC-----------CCeEEEEEcCCCcCchhhhhccCC-------
Confidence 88777665 46665 79999999999 9999986 99999999999865 889988653
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|++++| |+|+.|+||+.|++|+||+
T Consensus 336 --------------------------~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 336 --------------------------TPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp --------------------------SCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred --------------------------CCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 17888855 5889999999999999998
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=317.69 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=243.9
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|..+.|+ +++||+++.||+|++||+.+++++.++.+ |...|.+++|+|+|+.|++++ .| .+++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~----~d------g~i~ 99 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS----AD------YSIK 99 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------TEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe----CC------CeEE
Confidence 67777777777 89999999999999999999999999997 778999999999999999976 45 6999
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC-----CcEEEeecCCCeEE-----------EEEc--C
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTML-----------YSIS--D 226 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D-----~tiKlWdl~tg~~l-----------~tl~--~ 226 (474)
||++.++++... +. +...+..++|+ |+|++|++++.| ++|++||+.++... ..+. .
T Consensus 100 iwd~~~~~~~~~---~~--~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVAT---WK--SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEE---EE--CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEE---ee--cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 999999987442 33 23456789998 799999999999 99999999866421 1221 2
Q ss_pred C--cEEEEEEcCC-ceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 227 K--HVQEIKISPG-IMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 227 ~--~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
. .|..++|+|+ ..|+++ +.|+.|++||+.+ ++++.++..|...+..++|+ |++..|++++.|++|++||+++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAG---HKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEE---ETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTT
T ss_pred CccceeEEEEcCCCCEEEEE---cCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCC
Confidence 2 8999999985 455554 4478999999999 89999999999999999998 5788888899999999999999
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc-CC--------------cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--------------TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~--------------tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
++++..+. +...+..++|+|+++++++++ ++ +|++||.. ++++.++.+|... |.+++|
T Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~ 323 (369)
T 3zwl_B 250 LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----LNTVAI 323 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----EEEEEE
T ss_pred Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----EEEEEE
Confidence 99998877 667899999999999999998 77 89999995 9999999999887 799999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
+|||++||+++. ||+|+|||+.++....++..
T Consensus 324 s~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~ 355 (369)
T 3zwl_B 324 SPQGTSYASGGE-----------DGFIRLHHFEKSYFDFKYDV 355 (369)
T ss_dssp CTTSSEEEEEET-----------TSEEEEEEECHHHHTCCCHH
T ss_pred CCCCCEEEEEcC-----------CCeEEEEECccccchhHHHH
Confidence 999999999987 99999999988776554433
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=333.84 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=201.5
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIkLWd 256 (474)
|...|.+|+|+ |||++||+|+.|++|||||+.+++ ++.++. ...|++|+|+| +.+||++ +.|++|+|||
T Consensus 12 H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~---s~D~~v~iWd 87 (316)
T 3bg1_A 12 HEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC---SYDRKVIIWR 87 (316)
T ss_dssp --CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEE---ETTSCEEEEC
T ss_pred ccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEE---ECCCEEEEEE
Confidence 45677799998 799999999999999999999885 466775 46899999984 6778776 4589999999
Q ss_pred cCCC--eEEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCc---eEEeccccCCceEEEEEcCC------
Q 011970 257 IEDG--TVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE------ 324 (474)
Q Consensus 257 i~tG--~~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~---~~~~l~~h~~~v~sv~Fspd------ 324 (474)
+++| +++.++.+|...|.+|+|+|.. +..|++++.|++|+|||++++. +...+.+|...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9998 4778888999999999998542 5677888999999999999863 24567889999999999998
Q ss_pred -----------CcEEEEEc-CCcEEEEeCC-C---cEEEEeccCCCCcCCCCeeEEEECCCC----CEEEEEecCCCccc
Q 011970 325 -----------NQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQ 384 (474)
Q Consensus 325 -----------g~llaS~s-D~tIklWd~~-G---~ll~tl~gH~~~~~~~~v~svafSpDg----~~LaS~s~~~~~~~ 384 (474)
+++|+|++ |++|+|||++ + +++.+|++|..+ |++|+|+|++ ++|||++.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~-----V~~v~~sp~~~~~~~~las~s~------ 236 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-----VRDVAWAPSIGLPTSTIASCSQ------ 236 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC-----EEEEECCCCSSCSCCEEEEEET------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc-----eEEEEecCCCCCCCceEEEEcC------
Confidence 47899999 9999999996 4 478899999988 7999999997 89999987
Q ss_pred cccCCCCeEEEEeCCCC---e-EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 011970 385 WMEGSAGSINVSSILTG---K-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 460 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG---~-cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L 460 (474)
|++|+|||+.++ + +...+.+|.. .|++|+|+|||+.|
T Consensus 237 -----D~~v~iw~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 237 -----DGRVFIWTCDDASSNTWSPKLLHKFND----------------------------------VVWHVSWSITANIL 277 (316)
T ss_dssp -----TCEEEEEECSSTTCCCCBCCEEEECSS----------------------------------CEEEEEECTTTCCE
T ss_pred -----CCeEEEEEccCccccchhhhhhhcCCC----------------------------------cEEEEEEcCCCCEE
Confidence 999999998762 2 2345667764 89999999999999
Q ss_pred EEEcCCCcEEEcc
Q 011970 461 YTGNRHGLVHVWS 473 (474)
Q Consensus 461 aSgs~DgtVklWd 473 (474)
|+|+.|++|+||+
T Consensus 278 as~~~D~~v~lw~ 290 (316)
T 3bg1_A 278 AVSGGDNKVTLWK 290 (316)
T ss_dssp EEEESSSCEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 9999999999997
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.76 Aligned_cols=280 Identities=13% Similarity=0.183 Sum_probs=229.4
Q ss_pred ccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 87 KRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 87 ~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
|..+|..|.|. +++||+++.||+|++||+.+++.+..+.+ |...|.+++|+|+|+.|++++ .| ..+++
T Consensus 17 h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~d------g~i~~ 85 (313)
T 3odt_A 17 HDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGG----KD------TMING 85 (313)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEE----TT------SCEEE
T ss_pred CCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEec----CC------CeEEE
Confidence 33444444444 88999999999999999999999999986 778999999999999999976 44 57889
Q ss_pred eEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC--CceEE
Q 011970 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLL 241 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp--g~~la 241 (474)
|++...........+. .+...+..++|+ +++|++++.|++|++|| +++++..+. ...|.+++|+| +..++
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLI-GHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchh-hcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 9986654322111222 245566788884 67999999999999999 677777665 57899999996 66666
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEee-cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
++ +.|+.|++|| .++.+.++.. |...+..++|++ ++.+++++.|++|++||+++++++..+.+|...+.+++
T Consensus 160 ~~---~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 160 TA---SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD--DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EE---ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EE---ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC--CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 65 4578999999 6788999987 889999999985 34588899999999999999999999999999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|+|+|+ |++++ |++|++||+. ++++.++..|... |.+++|+|||++++ ++. ||+|+|||+
T Consensus 233 ~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~-~~~-----------dg~i~iw~~ 294 (313)
T 3odt_A 233 LLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAIS-----IWSVDCMSNGDIIV-GSS-----------DNLVRIFSQ 294 (313)
T ss_dssp ECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSC-----EEEEEECTTSCEEE-EET-----------TSCEEEEES
T ss_pred EecCCC-EEEEecCCEEEEEECCCCceeEEEeccCce-----EEEEEEccCCCEEE-EeC-----------CCcEEEEeC
Confidence 999995 66666 9999999995 9999999999876 79999999999654 554 999999999
Q ss_pred CCCeEEEEec
Q 011970 399 LTGKCLAKIN 408 (474)
Q Consensus 399 ~tG~cl~tl~ 408 (474)
.+++++....
T Consensus 295 ~~~~~~~~~~ 304 (313)
T 3odt_A 295 EKSRWASEDE 304 (313)
T ss_dssp CGGGCCC---
T ss_pred CCCceeehhh
Confidence 9998876553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=354.82 Aligned_cols=280 Identities=12% Similarity=0.128 Sum_probs=231.1
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccc-----cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-----g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|..|.++ +++|+++|.||+|++|++.+ +.+.+.+.+ |...|.+|+|+|+|+.|+|+| .|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs----~D---- 451 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGS----WD---- 451 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEE----TT----
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEe----CC----
Confidence 45555666665 47999999999999999876 456678887 788999999999999999976 55
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc------CCcEEEE
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEI 232 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~------~~~V~~v 232 (474)
++++|||+.+|++... +. +|...+.+|+|+ |+|++|++|+.|++|||||+.. .+..++. ...|.++
T Consensus 452 --g~v~vwd~~~~~~~~~---~~-~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 452 --GELRLWDLAAGVSTRR---FV-GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp --SEEEEEETTTTEEEEE---EE-CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEE
T ss_pred --CcEEEEECCCCcceeE---Ee-CCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEE
Confidence 6999999999886331 22 245667799998 7999999999999999999854 4444442 3579999
Q ss_pred EEcCCc---eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 233 KISPGI---MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 233 afSpg~---~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
+|+|++ .++++ +.|++|+|||+++++++.++.+|...|.+|+|+ |++..|++++.|++|+|||+++++++..+
T Consensus 524 ~~~~~~~~~~l~s~---s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 524 RFSPNTLQPTIVSA---SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp EECSCSSSCEEEEE---ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred EEeCCCCcceEEEE---eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 999854 56665 558999999999999999999999999999998 67888888999999999999999999887
Q ss_pred cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCc--------------CCCCeeEEEECCCCCEEE
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH--------------PDCNTNNIYITSDQDLII 374 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~--------------~~~~v~svafSpDg~~La 374 (474)
..+ ..+.+++|+|++.+|++++|+.|+|||++ ++++.++..|.... .-..+.+++|||||++|+
T Consensus 600 ~~~-~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 600 EAN-SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp BCS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred cCC-CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 765 47999999999999998888899999995 89998887543210 001257899999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeCC
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
||+. ||+|+|||+.
T Consensus 679 sgs~-----------Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 SGYT-----------DGVIRVWGIG 692 (694)
T ss_dssp EEET-----------TSEEEEEEC-
T ss_pred EEcC-----------CCeEEEEecc
Confidence 9987 9999999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=327.34 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=224.0
Q ss_pred ccccEEEEEee--c-cEEEEeeCCCeEEeeeccccceeeEeec-CCCceEEEEEEee-CCCEEEEEEeecCCCccceeee
Q 011970 87 KRTKVIEIVAA--R-DIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 87 ~~~~V~~i~~s--~-~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|...|.++.|+ + ++||+++.||+|++||+.+++..+.+.. .|...|.++.|+| +++.|++++ .| .
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~d------~ 141 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS----IR------G 141 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE----TT------T
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe----CC------C
Confidence 34455555555 6 7999999999999999999999988863 4889999999999 788999876 45 6
Q ss_pred EEEEeEeccCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC
Q 011970 162 STKIEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG 237 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg 237 (474)
+++||++..+.. . .+.. .+...+..++|+ |+|++|++++.|++|++||+ +++++.++. ...|.+++|+|+
T Consensus 142 ~i~iwd~~~~~~-~---~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 142 ATTLRDFSGSVI-Q---VFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EEEEEETTSCEE-E---EEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred EEEEEECCCCce-E---EEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 899999874332 2 2221 123557789998 79999999999999999999 678888875 468999999985
Q ss_pred c--eEEEEecCCCCccEEEEecCC----CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc
Q 011970 238 I--MLLIFNRSSSHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 238 ~--~la~~s~~s~D~tIkLWdi~t----G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
+ +++++ +.|++|+|||+++ ++++.++ +|...+.+++|++.++..|++++.|++|+|||+++++++..+.+
T Consensus 216 ~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 216 CDWLMATS---SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CTTEEEEE---ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCEEEEE---eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 5 56655 4589999999998 8899888 58899999999843788999999999999999999998777665
Q ss_pred cC-----------------CceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 312 EF-----------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 312 h~-----------------~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
|. ..+..++|+|||++ +++ |++|+|||+. |+++.++.+|... ..+..++|+|||++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~---~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA---GIISLNKFSPTGDV 366 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC---SCCCEEEECTTSSE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC---ceEEEEEEecCccE
Confidence 53 23445778888888 777 9999999995 9999999985421 12567899999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
||+++ |++|+|||+.+
T Consensus 367 l~s~s------------d~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASGM------------GFNILIWNRED 382 (383)
T ss_dssp EEEEE------------TTEEEEEECC-
T ss_pred EEEec------------CCcEEEEecCC
Confidence 99984 89999999864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=321.91 Aligned_cols=283 Identities=10% Similarity=0.115 Sum_probs=234.4
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|..+|.++.|+ +++||+++.||++++|+..+++ ++.++.+ |...|.+++|+|+|+.|++++ .| +.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~----~d------g~ 75 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG----TD------RN 75 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE----TT------SC
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEc----CC------Ce
Confidence 44445555555 8999999999999999999988 9999996 778999999999999999976 45 68
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEc---CCcEEEEEEcC
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKHVQEIKISP 236 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~---~~~V~~vafSp 236 (474)
+++|++..+++.....+.. +...+..++|+ |+|++|++++.|++|++||+.+++ +...+. ...|.+++|+|
T Consensus 76 i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILR--INRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEEEEEETTEEEEEEECCC--CSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred EEEEECCCCeeeeeEEeec--CCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 9999998887533222222 34567789998 799999999999999999998876 234442 46899999998
Q ss_pred C-ceEEEEecCCCCccEEEEec------------------CCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 237 G-IMLLIFNRSSSHVPLKILSI------------------EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 237 g-~~la~~s~~s~D~tIkLWdi------------------~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+ .+++++ +.|++|++||+ .+++++.++.+|...+..++|+ |++..|++++.|++|++
T Consensus 153 ~~~~l~~~---~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 153 NSVLLAAG---SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp TSSEEEEE---ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEE
T ss_pred CCCEEEEE---cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEE
Confidence 4 556655 44799999994 5799999999999999999998 57788999999999999
Q ss_pred EECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-C--Cc--EE--------------------------
Q 011970 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-R--GE--LV-------------------------- 346 (474)
Q Consensus 298 WDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~--G~--ll-------------------------- 346 (474)
||+++++++..+.+|...+.+++|+|++++|+++.|++|++||+ . |+ ++
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred EECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 99999999999999999999999999999999988999999999 4 42 11
Q ss_pred ----------EEe-ccCCCCcCCCCeeEEE-ECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 347 ----------TSF-EDHLLWHPDCNTNNIY-ITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 347 ----------~tl-~gH~~~~~~~~v~sva-fSpDg---~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
..+ .+|... |++++ +++|| ++|+|++. ||+|+|||+.+++.
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~g~~~~~l~s~~~-----------Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRSLES 364 (372)
T ss_dssp C---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHHHHH
T ss_pred cccccCccccccccccccCC-----cceeEEecCCCcceeeEEEecC-----------CCceEEEEecChhH
Confidence 223 388776 78998 55888 99999987 99999999987654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=319.69 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=231.9
Q ss_pred ccccEEEEEee------ccEEEEeeCCCeEEeeeccccceeeEeecC----CCceEEEEEEeeC----CCEEEEEEeecC
Q 011970 87 KRTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKN----NDSLITVSVYAS 152 (474)
Q Consensus 87 ~~~~V~~i~~s------~~~las~s~dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspd----g~~Lis~S~~~s 152 (474)
|..+|..|.|+ ...+++++.++.|++|+..+++.+..++.+ |.+.|.+++|+|+ |+.|++++
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---- 92 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG---- 92 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE----
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec----
Confidence 56677777776 456777777789999999999998888753 4477999999999 66898866
Q ss_pred CCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-----cCC
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDK 227 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-----~~~ 227 (474)
.| .+++||++.++++... +. .+...+..++|+|.++++|++++.|++|+|||+.+++++..+ +..
T Consensus 93 ~d------g~i~v~d~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 93 SR------GIIRIINPITMQCIKH---YV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp TT------CEEEEECTTTCCEEEE---EE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred CC------CEEEEEEchhceEeee---ec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 55 6999999999887432 22 245667799998339999999999999999999999999988 356
Q ss_pred cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee----------------------------cCcceeEEEE
Q 011970 228 HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH----------------------------LLHRNKKVDF 278 (474)
Q Consensus 228 ~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~----------------------------h~~~v~~V~F 278 (474)
.|.+++|+| +..|+++ +.|++|++||+++++++.++.. |...+.+++|
T Consensus 163 ~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSC---GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CEEEEEECTTSSEEEEE---ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ceeEEEECCCCCEEEEe---cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 899999998 5566655 4479999999999887665554 8899999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCce--------------EEeccccCCceEEEEEcCC--CcEEEEEc-CCcEEEEeC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAEL--------------MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~--------------~~~l~~h~~~v~sv~Fspd--g~llaS~s-D~tIklWd~ 341 (474)
+ ++.+++++.|++|++||+.++++ +..+.+|...|++++|+|+ |++|++++ |++|++||+
T Consensus 240 ~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 240 L---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp E---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred c---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 7 67888899999999999998855 7788899999999999999 99999999 999999999
Q ss_pred C-Cc----EEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 342 R-GE----LVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 342 ~-G~----ll~tl~gH--~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+ ++ .+.++.+| ... |++++|+|||++||+++. ||+|+|||+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~-----------dg~i~iwd~~~ 366 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAA-----IRQTSFSRDSSILIAVCD-----------DASIWRWDRLR 366 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEEC--
T ss_pred CCCCCccccceEEcccccCCc-----eEEEEeCCCCCeEEEEeC-----------CCEEEEEEecC
Confidence 5 65 55689998 444 799999999999999987 99999999854
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=322.33 Aligned_cols=290 Identities=12% Similarity=0.089 Sum_probs=222.5
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEee------------cCCCceEEEEEEee-CCCEEEEEEee
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLN------------VSPDEVIRSLFYNK-NNDSLITVSVY 150 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~------------g~~~~~i~sv~fsp-dg~~Lis~S~~ 150 (474)
|..+|..+.|+ +++||+++.||+|++|++.+++.+..+. ..|...|.++.|+| +++.|++++
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-- 119 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS-- 119 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE--
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe--
Confidence 44555555554 7999999999999999999998877765 23788999999999 777898865
Q ss_pred cCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC--CCeEEEEecCCCcEEEeecCCCeEEEEEc--C
Q 011970 151 ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 226 (474)
Q Consensus 151 ~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~--nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~ 226 (474)
.| ..+++|++..+++.. .+.. ...+..+.|++. ++++|++++.|++|++||+.+++++.++. .
T Consensus 120 --~d------~~i~iwd~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 120 --FD------KTLKVWDTNTLQTAD---VFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp --TT------SEEEEEETTTTEEEE---EEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred --CC------CeEEEeeCCCCccce---eccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 45 699999999888633 2332 234557888732 55699999999999999999999888886 4
Q ss_pred CcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCe-EEEEE---------------eecCcceeEEEEEecCCCeEEE
Q 011970 227 KHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGT-VLKVF---------------YHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 227 ~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~-~L~tl---------------~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
..|.+++|+|++ +++++ +.|++|++||+++++ ++..+ ..|...+..++|+ |++..|++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 262 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATA---SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLT 262 (408)
T ss_dssp SCEEEEEECSSCTTEEEEE---ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEE
T ss_pred CcEEEEEECCCCCcEEEEE---cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEE
Confidence 689999999854 35555 457999999999886 66666 5678899999998 57888999
Q ss_pred EeCCCcEEEEECCCCceEEeccccC------CceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCe
Q 011970 289 KQENENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNT 361 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~------~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v 361 (474)
++.|++|++||+.+++......++. .....+...+.+.+++++.|++|++||+. |+++.++.+|... |
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v 337 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----V 337 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----E
T ss_pred ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----E
Confidence 9999999999999998765543321 12223333455555555559999999995 9999999999886 7
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 362 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 362 ~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.+++|+|||++|++++. ||+|+|||+.+++.+.....+.
T Consensus 338 ~~~~~s~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~ 376 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSR-----------DCNILAWVPSLYEPVPDDDETT 376 (408)
T ss_dssp EEEEEETTTTEEEEEET-----------TSCEEEEEECC-----------
T ss_pred EEEEEcCCCCEEEEECC-----------CCeEEEEeCCCCCccCCCCceE
Confidence 89999999999999987 9999999999999887765554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=361.88 Aligned_cols=265 Identities=12% Similarity=0.061 Sum_probs=208.7
Q ss_pred ccceeeEeecCCCceEEEEEEeeCC---------CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccC
Q 011970 117 TNRRICFLNVSPDEVIRSLFYNKNN---------DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (474)
Q Consensus 117 tg~~l~~l~g~~~~~i~sv~fspdg---------~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~ 187 (474)
++++..+++ +.+.|++|+|+|++ ++||+++.. + +.
T Consensus 123 ~~r~~~~~~--~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~---~----------------~~--------------- 166 (524)
T 2j04_B 123 GKRRGFIYN--VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQ---Y----------------MD--------------- 166 (524)
T ss_dssp CCSCEEEEE--CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------
T ss_pred CCcceEEEE--CCCceeEEEecccCCCCccCcCCeEEEEEEec---c----------------cC---------------
Confidence 466777776 45889999999998 788886521 1 00
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE----EEEc--CCcEEEEEEcCC-------ceEEEEecCCCCccEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSIS--DKHVQEIKISPG-------IMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l----~tl~--~~~V~~vafSpg-------~~la~~s~~s~D~tIkL 254 (474)
..++ |++++|||++.|++|||||+.++++. .++. ...|+.|+|+|+ ++||++ +.|++|+|
T Consensus 167 ---~~~~-~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~---s~Dgtvrl 239 (524)
T 2j04_B 167 ---EPLN-EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFV---SQEGTINF 239 (524)
T ss_dssp -------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEE---ETTSCEEE
T ss_pred ---Cccc-hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEE---ecCCeEEE
Confidence 0124 79999999999999999999888742 3443 467999999984 577766 45899999
Q ss_pred EecCCCeE-----------EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEE--E
Q 011970 255 LSIEDGTV-----------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAF--I 320 (474)
Q Consensus 255 Wdi~tG~~-----------L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv--~ 320 (474)
||+.++++ ..++.+|...+.+|+|++ ++.|++++.|++|+|||+++++ +..++.+|...|.++ +
T Consensus 240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA 317 (524)
T ss_dssp EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred EEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence 99988753 247889999999999985 4688889999999999999875 456788999999999 6
Q ss_pred EcCCC-cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 321 FLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 321 Fspdg-~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+|+| ++|||++ |++|||||++ ++++.++.+|... ..|++|+|+|||+.||+++. |++|||||
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~-----------d~tv~lwd 383 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYSDG-----------ASSLRAVP 383 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEECS-----------SSEEEEEE
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---CcccceEeCCCcCeEEEeCC-----------CCcEEEEE
Confidence 79998 9999999 9999999995 8998899988742 12678999999999999876 99999999
Q ss_pred CCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 398 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 398 i~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.+++|+.++.+|.+ .|++|+|||||+.||||+.||+|+|||.
T Consensus 384 ~~~~~~~~~l~gH~~----------------------------------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 384 SRAAFAVHPLVSRET----------------------------------TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp TTCTTCCEEEEECSS----------------------------------CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred CcccccceeeecCCC----------------------------------ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 999999999999996 8999999999999999999999999983
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=332.36 Aligned_cols=309 Identities=12% Similarity=0.057 Sum_probs=218.0
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC--CCCCccceeeeccccCceEEEEeCCCCeEEEEec
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s 205 (474)
+.+.|.+++|+|||+.||+++ .| .+++||++..+ ++... +. +|...+..++|+ |+|++|++++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~----~d------~~i~iw~~~~~~~~~~~~---~~-~h~~~v~~~~~s-~~~~~l~s~s 74 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTT----AT------NQVELYEQDGNGWKHART---FS-DHDKIVTCVDWA-PKSNRIVTCS 74 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCC----SS------SCBCEEEEETTEEEECCC---BC-CCSSCEEEEEEC-TTTCCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEec----CC------CEEEEEEccCCceEEEEE---Ee-cCCceEEEEEEe-CCCCEEEEEe
Confidence 456799999999999999854 55 68899999888 44332 22 245567799998 7999999999
Q ss_pred CCCcEEEeecCCCe---EEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe---EEEEEee-cCcceeE
Q 011970 206 QDSIYKVFDLKNYT---MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---VLKVFYH-LLHRNKK 275 (474)
Q Consensus 206 ~D~tiKlWdl~tg~---~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~---~L~tl~~-h~~~v~~ 275 (474)
.|++|+|||+.+++ +...+. ...|.+++|+| +.+|+++ +.|++|++||+++++ +++.+.+ |...+.+
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 99999999999887 556554 56899999998 5566665 448999999999998 4888987 9999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECC------------------CCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVR------------------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~------------------tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
++|+ |++..|++++.|++|+|||+. +++++..+ +|...|.+++|+|+|++|++++ |++|
T Consensus 152 ~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 152 LDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 9998 577888889999999999995 46778888 9999999999999999999999 9999
Q ss_pred EEEeCC-CcE----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-C-eEEEEecC
Q 011970 337 AVWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-G-KCLAKINA 409 (474)
Q Consensus 337 klWd~~-G~l----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G-~cl~tl~g 409 (474)
+|||+. +++ +.++.+|... |.+++|+|||++|++++. |+.+ +|+... | ++...+..
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~ 292 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLP-----LRSLLWANESAIVAAGYN-----------YSPI-LLQGNESGWAHTRDLDA 292 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSC-----EEEEEEEETTEEEEEESS-----------SSEE-EECCCC---CCSBCCCS
T ss_pred EEEECCCCCCcceeeEeecCCCCc-----eEEEEEcCCCCEEEEEcC-----------CcEE-EEEeCCCceEEEeeecc
Confidence 999995 887 8899999987 789999999999999864 5655 666543 3 23333332
Q ss_pred CCCCCCCccccCCCC--CCccccc------cccc---------cccccccccccCEEEEEEcCCC-C---EEEEEcCCCc
Q 011970 410 TNCSPKVDDELGSSS--TGKSKKL------NKSS---------YIRSTVGEALEDITSLFYDEER-N---EIYTGNRHGL 468 (474)
Q Consensus 410 H~~~~~~~~~~~~~~--~~~~~~~------~~~~---------~~~~~~~~~l~~V~slafSpDg-~---~LaSgs~Dgt 468 (474)
...... ..+...+. .+..... .... .......-+...|++|.+.++. . .|+||+.||+
T Consensus 293 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~ 371 (377)
T 3dwl_C 293 GTSKTS-FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGR 371 (377)
T ss_dssp CCCCCC-BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSE
T ss_pred cccccc-cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCc
Confidence 221000 00000000 0000000 0000 0000011255689999965544 4 6999999999
Q ss_pred EEEccC
Q 011970 469 VHVWSN 474 (474)
Q Consensus 469 VklWd~ 474 (474)
|+|||.
T Consensus 372 i~iWdl 377 (377)
T 3dwl_C 372 VVLWTL 377 (377)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=326.29 Aligned_cols=293 Identities=11% Similarity=0.143 Sum_probs=231.0
Q ss_pred cccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCcccee
Q 011970 82 LPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 82 ~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk 159 (474)
.|.|+...-+.-|.++ +++||+|. |++|+|||..||+++..+.. .|.+.|.+|+|+|||+.||+++ .|
T Consensus 99 ap~~~~d~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs----~D----- 168 (420)
T 4gga_A 99 APEIRNDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT----SS----- 168 (420)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE----TT-----
T ss_pred CCCCcccccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE----CC-----
Confidence 3444444444456777 67777665 99999999999999887764 3667899999999999999976 55
Q ss_pred eeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEcC
Q 011970 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKISP 236 (474)
Q Consensus 160 ~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~--~~~V~~vafSp 236 (474)
.+++||++.+|++... +. +|...+.++++ |+++|++|+.|+++++||..+.. .+.++. ...|..+.++|
T Consensus 169 -g~v~iWd~~~~~~~~~---~~-~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 169 -AEVQLWDVQQQKRLRN---MT-SHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp -SCEEEEETTTTEEEEE---EC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -CeEEEEEcCCCcEEEE---Ee-CCCCceEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 6999999999987432 21 24445555555 57899999999999999988654 556664 46899999998
Q ss_pred -CceEEEEecCCCCccEEEEecCCCe----EEEEEeecCcceeEEEEEecCCCeEEEE--eCCCcEEEEECCCCceEEec
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVS 309 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~----~L~tl~~h~~~v~~V~F~~~~~~~ll~~--~~D~tIkIWDv~tg~~~~~l 309 (474)
+..++++ +.|+.|+||++.+|+ .+..+..|...|..++|++.....++++ +.|++|+|||+.+++++..+
T Consensus 241 ~g~~l~s~---~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 241 DGRHLASG---GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp TSSEEEEE---ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred CCCeeeee---eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 5555554 458999999999886 3577788889999999985544555543 48999999999999999988
Q ss_pred cccCCceEEEEEcCCCcEEEEE--c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 310 RTEFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~--s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
..|. .+.+++|+|+++.++++ + |++|+|||+. ++++.+|+||... |++++|||||++|||||.
T Consensus 318 ~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spdg~~l~S~s~------- 384 (420)
T 4gga_A 318 DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA------- 384 (420)
T ss_dssp ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-------
T ss_pred cccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-------
Confidence 7765 68889999999988875 3 8999999995 9999999999987 799999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 386 MEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 386 ~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
|++|||||+.+..+.++.+.|..
T Consensus 385 ----D~tvriWdv~~~~~~~~~~~~~~ 407 (420)
T 4gga_A 385 ----DETLRLWRCFELDPARRREREKA 407 (420)
T ss_dssp ----TTEEEEECCSCSSCC--------
T ss_pred ----CCeEEEEECCCCCccchhhhccC
Confidence 99999999988888777766653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=316.61 Aligned_cols=283 Identities=11% Similarity=0.090 Sum_probs=226.9
Q ss_pred ccccEEEEEee--c-cEEEEeeC---CCeEEeeeccccceeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCccc
Q 011970 87 KRTKVIEIVAA--R-DIVFALAH---SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSS 157 (474)
Q Consensus 87 ~~~~V~~i~~s--~-~~las~s~---dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd---g~~Lis~S~~~s~d~s~ 157 (474)
|...|.+|.|+ + .++++++. ||++++|++.+++........|...|.+++|+|+ |+.|++++ .|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----~d--- 89 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD----FG--- 89 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE----TT---
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec----CC---
Confidence 66677777777 5 56677776 9999999999999877665557889999999999 69999866 45
Q ss_pred eeeeEEEEeEeccCC-CCCccceeeeccccCceEEE------EeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcC---
Q 011970 158 LKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVE------FDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--- 226 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~-~~~~~~lf~~~~~~~~~~V~------Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~--- 226 (474)
..+++|++..++ +... +. .+...+..++ |+ |+|++|++++.|++|+|||+.+++ ++.++..
T Consensus 90 ---g~i~iwd~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~s-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 90 ---GNLHIWNLEAPEMPVYS---VK-GHKEIINAIDGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp ---SCEEEECTTSCSSCSEE---EC-CCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred ---CeEEEEeCCCCCccEEE---EE-ecccceEEEeeccccccC-CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 689999999887 4332 22 2344566774 55 799999999999999999999987 6777641
Q ss_pred ---CcEEEEE----EcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec--CCCeEEEEeCCCcEE
Q 011970 227 ---KHVQEIK----ISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQ 296 (474)
Q Consensus 227 ---~~V~~va----fSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~--~~~~ll~~~~D~tIk 296 (474)
..|++++ |+| +..++++ +.|+.|++||+++++++.. ..|...+..++|++. ++..+++++.|++|+
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAG---YDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEE---ETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEE---ccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 2799998 676 5555554 4478999999999998655 456789999999842 688999999999999
Q ss_pred EEECCCCceEEecc-----ccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-C-------------------cEEEEe
Q 011970 297 ILDVRNAELMEVSR-----TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-G-------------------ELVTSF 349 (474)
Q Consensus 297 IWDv~tg~~~~~l~-----~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G-------------------~ll~tl 349 (474)
|||+++++++..+. +|...|.+++|+|+++ +|++++ |++|+|||++ + +++.++
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99999988765444 8999999999999999 899998 9999999984 3 478899
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~La-S~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
.+|... |.+++|+|||++|+ |++. |++|+|||+.+.+++
T Consensus 318 ~~~~~~-----v~~~~~s~~~~~l~~s~~~-----------d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 318 TLSTQP-----ISSLDWSPDKRGLCVCSSF-----------DQTVRVLIVTKLNKI 357 (357)
T ss_dssp ECCSSC-----EEEEEECSSSTTEEEEEET-----------TSEEEEEEECC----
T ss_pred ccCCCC-----eeEEEEcCCCCeEEEEecC-----------CCcEEEEECCCcccC
Confidence 999887 79999999999998 7876 999999999876653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=322.00 Aligned_cols=301 Identities=10% Similarity=0.083 Sum_probs=215.9
Q ss_pred eeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEE
Q 011970 112 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (474)
Q Consensus 112 lW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V 191 (474)
||++.+.+.+.++++ |.+.|++|+|||||+.|++++ ++ .++||++..++. .+... ...+..+
T Consensus 3 i~s~~~~~~~~~~~~-h~~~V~~v~fs~dg~~la~g~----~~-------~~~iw~~~~~~~-----~~~~~-~~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPENH-VSNPVTDYEFNQDQSCLILST----LK-------SFEIYNVHPVAH-----IMSQE-MRHLSKV 64 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEEC----SS-------EEEEEEETTEEE-----EEEEE-CSCCCEE
T ss_pred cccccccCCcccccc-CCCceEEEEECCCCCEEEEEc----CC-------EEEEEecCCcce-----eeeee-cCCeEEE
Confidence 577888888888886 778999999999999998853 55 468999877664 22221 2235578
Q ss_pred EEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCC-eEEEEEee
Q 011970 192 EFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYH 268 (474)
Q Consensus 192 ~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~ 268 (474)
+|. +++..+ ++++.|++|+|||+.+++++.++. ...|.+++|+|+..+++. |++|+|||+.++ ++++++..
T Consensus 65 ~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 65 RML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-----GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEC-TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-----TTEEEEEESSTTCCBSSCCEE
T ss_pred EEc-CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-----cCEEEEEECCCCceeeEEecc
Confidence 897 566666 568889999999999999998886 468999999987765543 578999999999 88887775
Q ss_pred cCcceeEEEEEecCCCeEEEE--eCCCcEEEEECCCCc----------------eEEeccccCCceEEEEEcCCCcEEEE
Q 011970 269 LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAE----------------LMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~--~~D~tIkIWDv~tg~----------------~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
....++|++ ..++++ +.|++|+|||+.+++ ++.++.+|...|.+++|+|||++|||
T Consensus 139 ---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 344455553 667764 689999999999876 37888999999999999999999999
Q ss_pred Ec-CCc-EEEEeCC-CcEEEEec-c-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--
Q 011970 331 FR-NRT-VAVWNFR-GELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-- 403 (474)
Q Consensus 331 ~s-D~t-IklWd~~-G~ll~tl~-g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c-- 403 (474)
++ |++ |+|||++ |+++.+|. + |... |++++|+|||++||+++. |++|+|||+.++..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~-----v~~~~~s~~~~~l~s~s~-----------d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRAD-----VVDMKWSTDGSKLAVVSD-----------KWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSC-----EEEEEECTTSCEEEEEET-----------TCEEEEEESSCCSCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCc-----EEEEEECCCCCEEEEEEC-----------CCEEEEEEccCCCCcc
Confidence 99 999 9999995 99999999 6 8876 799999999999999987 99999999976532
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccc-ccc-ccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-TVG-EALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...+.++-. |. .....|.+.. ..+ ........++|+|||+.|++|+.||++++|+
T Consensus 277 ~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 277 RHALKGWIN-MK--------------YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEETTTTEE-CC--------------CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccccceee-cc--------------ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 222222100 00 0000111100 001 1112346699999999999999999999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=310.56 Aligned_cols=299 Identities=14% Similarity=0.081 Sum_probs=236.0
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeec
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESE 183 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd---g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~ 183 (474)
+.+..|+....+.+..+.+ |.+.|.+|+|+|+ |+.|++++ .| ..++||++.+ ++... ..+. .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~g~~l~~~~----~d------g~i~iw~~~~~~~~~~--~~~~-~ 84 (368)
T 3mmy_A 19 GSATTDNHNPMKDIEVTSS-PDDSIGCLSFSPPTLPGNFLIAGS----WA------NDVRCWEVQDSGQTIP--KAQQ-M 84 (368)
T ss_dssp ----CCSSCTTCCEECSSC-CSSCEEEEEECCTTSSSEEEEEEE----TT------SEEEEEEECTTSCEEE--EEEE-E
T ss_pred EEeccCCCCCcceeEeccC-CCCceEEEEEcCCCCCceEEEEEC----CC------CcEEEEEcCCCCceeE--EEec-c
Confidence 3455566677788888886 8899999999999 69999976 45 6899999987 54321 1122 2
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEE--cCCc-eEEEEecCCCCccEEEEecCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI--SPGI-MLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vaf--Spg~-~la~~s~~s~D~tIkLWdi~t 259 (474)
|...+..++|+ |||++|++++.|++|+|||+.+++++.... ...|.+++| +|++ .++++ +.|++|++||+++
T Consensus 85 h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 85 HTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG---SWDKTLKFWDTRS 160 (368)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEE---ETTSEEEEECSSC
T ss_pred ccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEc---cCCCcEEEEECCC
Confidence 45667799998 799999999999999999999999877553 678999999 7755 45554 4589999999999
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEEEEcCCCcE----EEEEc-
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQL----FLTFR- 332 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv~Fspdg~l----laS~s- 332 (474)
++++.++..| ..+..+.+. +..++++..|+++++||+++..... ....+...+..+.+.++++. +++++
T Consensus 161 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 161 SNPMMVLQLP-ERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SSCSEEEECS-SCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred CcEEEEEecC-CCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999999976 456777765 4688889999999999999865432 22334445566666655544 88888
Q ss_pred CCcEEEEeCC-C---cEEEEeccCCCCcC-------CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 333 NRTVAVWNFR-G---ELVTSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 333 D~tIklWd~~-G---~ll~tl~gH~~~~~-------~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
|++|++||++ + +++.++.+|..... ...|.+++|+|||++||+++. ||+|+|||+.+|
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~~~~ 305 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-----------DGRFSFWDKDAR 305 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTT
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-----------CCeEEEEECCCC
Confidence 9999999996 5 67889999875100 001789999999999999987 999999999999
Q ss_pred eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 402 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+++.++.+|.. .|++++|+|||+.||+|+.|+..+.|+
T Consensus 306 ~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 306 TKLKTSEQLDQ----------------------------------PISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEEECCCCSS----------------------------------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cEEEEecCCCC----------------------------------CceEEEECCCCCeEEEEeccccccccc
Confidence 99999999985 899999999999999999998766654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=302.28 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=226.4
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeecccccee---eEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCccceee
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l---~~l~g-~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~ 160 (474)
|...|..+.|+ +++|++++ ||++++|++.+++.. ..+.. .|...|.+++|+|+|+.|++++ .|
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d------ 118 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----EA------ 118 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----SS------
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc----CC------
Confidence 44555555555 88999999 999999999988744 34431 3778999999999999999866 44
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG- 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg- 237 (474)
..+++|++..++...... +. .+...+..++|+ |+|++|++++.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 119 ~~i~~~d~~~~~~~~~~~-~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAE-LT-SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp SEEEEEECCCC--EEEEE-EE-CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCCcceeee-cc-cCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 689999998887421111 21 234556789998 799999999999999999999999998886 468999999984
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
..|+++ +.|++|++||+++++++..+. |...+..++|+ |++..+++++.|++|++||+.+++... +.+|...|.
T Consensus 196 ~~l~~~---~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~v~ 269 (337)
T 1gxr_A 196 TKLWTG---GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVL 269 (337)
T ss_dssp SEEEEE---ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEE
T ss_pred CEEEEE---ecCCcEEEEECCCCceEeeec-CCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCcccee
Confidence 466655 457899999999999999886 55789999997 678888889999999999999998764 577899999
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
+++|+|++++|++++ |++|++||++ ++++..+ .|... +.+++|+|||++|++++. ||+|++
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~-----v~~~~~s~~~~~l~~~~~-----------dg~i~i 332 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSS-----VLSCDISVDDKYIVTGSG-----------DKKATV 332 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSC-----EEEEEECTTSCEEEEEET-----------TSCEEE
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCc-----EEEEEECCCCCEEEEecC-----------CCeEEE
Confidence 999999999999999 9999999995 8887655 45554 789999999999999986 999999
Q ss_pred EeC
Q 011970 396 SSI 398 (474)
Q Consensus 396 Wdi 398 (474)
||+
T Consensus 333 w~~ 335 (337)
T 1gxr_A 333 YEV 335 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=358.39 Aligned_cols=305 Identities=10% Similarity=0.023 Sum_probs=227.2
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
..|.+|.++ |+++|++|.|+||+ |.++++++ +| |...|++|+|+|||. + ++ |
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~g-h~~~v~~V~FsPdg~----------~-------~~---~ 69 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NC-NSKNLFHVKEFPLEF----------E-------NK---L 69 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SS-BGGGTEEEEEECCCC----------C-------CT---T
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccccee---cC-CCccEEEEEECCCCC----------c-------ce---E
Confidence 457777777 99999999999999 75556544 66 778899999999991 2 23 4
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC------cEEEEEEcC-Cce
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKISP-GIM 239 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~------~V~~vafSp-g~~ 239 (474)
++.+++... +++..+..+|..|+|| |||++||+++.|++|+|||.++ ++.++..+ .|.+|+||| |.+
T Consensus 70 ~~~~~~~~~---~~~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 70 DFELAQQNG---LLNSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp TTSCCCSSC---SSTTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSC
T ss_pred EEEeCCCce---EeecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCE
Confidence 444444322 2221224577899998 7999999999999999999655 66666522 399999998 666
Q ss_pred EEEEecCCCCccEEEEecCCCe-------EEEEE----eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE--
Q 011970 240 LLIFNRSSSHVPLKILSIEDGT-------VLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-- 306 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~-------~L~tl----~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-- 306 (474)
||++ +.|++|+|||+++|+ .++++ .+|..+|.+|+|+ |++ +++++.|++|++||+.++++.
T Consensus 144 LAsg---s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 144 IVVG---NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp EEEE---ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred EEEE---cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCCccccc
Confidence 6665 558999999999986 47888 5677899999999 444 888999999999999998853
Q ss_pred -Eec-cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEec-cCCCCcCCCCeeEEEE--CCCCCEEEEEecCCC
Q 011970 307 -EVS-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI--TSDQDLIISYCKAEP 381 (474)
Q Consensus 307 -~~l-~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~-gH~~~~~~~~v~svaf--SpDg~~LaS~s~~~~ 381 (474)
+++ .+|...|++++|+ |+.||+++|++|+|||+.+..+.++. ||... |++|+| +|||+.|++++.
T Consensus 218 ~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-----V~~va~~~s~d~~~La~a~e--- 287 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-----FHIIPLNHEKESTILLMSNK--- 287 (588)
T ss_dssp EEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-----CCEEEETTCSSCEEEEECSS---
T ss_pred eeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-----EEEEEeeeCCCCCEEEEEcC---
Confidence 566 4888999999999 68999999999999999755553444 89987 689999 999999999876
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccc---ccccCEEEEEEcCCCC
Q 011970 382 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG---EALEDITSLFYDEERN 458 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~V~slafSpDg~ 458 (474)
||+ |||.... ++ +..... ..|. ..+....|......- ++...|++|+|||||+
T Consensus 288 --------dG~-klw~~d~---~~-~spd~~----l~a~-------~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 288 --------TSY-KVLLEDE---LH-VTADNI----IAPY-------LEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp --------CEE-EEEESSS---EE-EECCCS----SHHH-------HHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred --------CCC-EEEeecc---EE-ECCCce----EEEE-------cCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 899 9999752 33 332221 0000 011222332211111 2223699999999999
Q ss_pred EEEEEcC
Q 011970 459 EIYTGNR 465 (474)
Q Consensus 459 ~LaSgs~ 465 (474)
+||+++.
T Consensus 344 ~lA~~~~ 350 (588)
T 2j04_A 344 SIAIVYD 350 (588)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=313.63 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=199.0
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC--CCCCccceeeeccccCceEEEEeCC-C
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDV-N 197 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~~-n 197 (474)
+.++++ |.+.|++++|+|||+.|||+| .| ++++||++..+ ++.. . +. +|...|..|+|++| +
T Consensus 2 ~~~~~~-h~~~V~~~~~s~~g~~las~s----~D------~~v~iw~~~~~~~~~~~--~-l~-gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANA-HNEMIHDAVMDYYGKRMATCS----SD------KTIKIFEVEGETHKLID--T-LT-GHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCS-CSSCEEEEEECTTSSEEEEEE----TT------SCEEEEEBCSSCBCCCE--E-EC-CCSSCEEEEEECCGGG
T ss_pred ceeccC-CcCceEEEEECCCCCEEEEEe----CC------CEEEEEecCCCCcEEEE--E-Ec-cccCCeEEEEecCCCc
Confidence 345676 889999999999999999976 55 69999998644 3322 1 22 34567789999854 5
Q ss_pred CeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEEEEecCCCeE--EEEEee
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTV--LKVFYH 268 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~~--L~tl~~ 268 (474)
|++||||+.|++|||||+++++ ++.++. ...|.+|+|+| +.+||++ +.|++|+|||++++.. ...+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~---s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA---SSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE---ECCCcEEEEEecCCCceeeeeeec
Confidence 9999999999999999999885 555554 56899999998 4577766 4589999999988742 467888
Q ss_pred cCcceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCCc----eEEeccccCCceEEEEEcCCC---cEEE
Q 011970 269 LLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN---QLFL 329 (474)
Q Consensus 269 h~~~v~~V~F~~~------------~~~~ll~~~~D~tIkIWDv~tg~----~~~~l~~h~~~v~sv~Fspdg---~lla 329 (474)
|...+.+++|+|. ++..|++++.|++|+|||+++++ +..++.+|...|.+++|+|++ ++||
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 9999999999853 14578888999999999999877 677899999999999999995 8999
Q ss_pred EEc-CCcEEEEeCC-Cc---EEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 330 TFR-NRTVAVWNFR-GE---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~---ll~tl--~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|++ |++|+|||++ ++ ....+ .+|..+ |++++|+|||++||+++. |++|+||+..
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~las~~~-----------D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKEN 284 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEET-----------TSCEEEEEEC
T ss_pred EEECCCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECCCCCEEEEEcC-----------CCcEEEEEEC
Confidence 999 9999999985 32 23344 466655 799999999999999987 9999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=315.92 Aligned_cols=277 Identities=12% Similarity=0.034 Sum_probs=231.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc-cceeeeccccCceEEEEeCCCCe-EEEEe
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGK-VLTYS 204 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~~nGk-~LaS~ 204 (474)
.|.+.|.+++|+|+|+.|++++ .| ..++||++..++.... ..++ .+...+.+++|+ |+|+ +|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~----~d------~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~l~~~ 75 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITS----WD------GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI-DNTDLQIYVG 75 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE-ESSSEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEc----CC------CeEEEEEeCCCCccccceeee--ecCCceEEEEEC-CCCCcEEEEE
Confidence 5889999999999999999976 44 5899999988872110 1122 345667799998 7999 99999
Q ss_pred cCCCcEEEeec-CCCeEEEEE----cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCC---------CeEEEEEeecC
Q 011970 205 AQDSIYKVFDL-KNYTMLYSI----SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---------GTVLKVFYHLL 270 (474)
Q Consensus 205 s~D~tiKlWdl-~tg~~l~tl----~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t---------G~~L~tl~~h~ 270 (474)
+.|++|++||+ .+++. ..+ +...|.+++|+|+.+++++ +.|++|++||+++ ++++.++. |.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAA---SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEE---ETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEE---cCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 99999999999 88876 333 4468999999997777766 4589999999998 88888887 77
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCC-Cce--EEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-C-
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G- 343 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~--~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G- 343 (474)
..+.+++|++ +.+++++.|++|++||+++ ++. ......|...+.+++|+| ++++|++++ |++|+|||++ +
T Consensus 151 ~~v~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 151 NKIFTMDTNS---SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CCEEEEEECS---SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred CceEEEEecC---CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 8999999974 3388899999999999998 653 344567888999999999 999999999 9999999995 5
Q ss_pred -----cEEEEeccCCCCcC----CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC-CCC
Q 011970 344 -----ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCS 413 (474)
Q Consensus 344 -----~ll~tl~gH~~~~~----~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH-~~~ 413 (474)
+++.+|.+|..... ...|++++|+|||++|++++. ||+|+|||+.+|+++.++.+| ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h~~- 295 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFAKFNED- 295 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECCCCSSS-
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-----------CceEEEEcCccHhHhhhhhcccCC-
Confidence 88899999965100 012799999999999999986 999999999999999999998 75
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc-EEE
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL-VHV 471 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt-Vkl 471 (474)
.|++++ |||+.||+|+.||+ .+.
T Consensus 296 ---------------------------------~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 296 ---------------------------------SVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp ---------------------------------EEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred ---------------------------------CceEec--CCCCeEEEEecCCccccc
Confidence 899999 99999999999998 443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=326.39 Aligned_cols=316 Identities=12% Similarity=0.158 Sum_probs=227.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-----Ccc---ceeeeccc------------cC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGF---ALFESESL------------KW 187 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~-----~~~---~lf~~~~~------------~~ 187 (474)
+.+.|.+|+|+|+|+.||+++ .| +.++||++..++.. ... ..+. +|. ..
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~----~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGD----KG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEE----TT------SEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEc----CC------CeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCc
Confidence 467899999999999999976 45 69999999877620 000 1122 233 55
Q ss_pred ceEEEEeCCCC--eEEEEecCCCcEEEeecCCCeEE---------------------------------------EEE--
Q 011970 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-- 224 (474)
Q Consensus 188 ~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~~l---------------------------------------~tl-- 224 (474)
|..|+|+ |++ ..|++++.|++|+|||+.++++. ..+
T Consensus 96 V~~l~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 7789998 687 78999999999999999875542 122
Q ss_pred -cCCcEEEEEEcCCceEEEEecCCCCccEEEEecC-CCeEEEE-------EeecCcceeEEEEEecCC-CeEEEEeCCCc
Q 011970 225 -SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKV-------FYHLLHRNKKVDFIEQFN-EKLLVKQENEN 294 (474)
Q Consensus 225 -~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~-tG~~L~t-------l~~h~~~v~~V~F~~~~~-~~ll~~~~D~t 294 (474)
+...|.+++|+|++.+++++ .|++|+|||++ .+++++. +.+|...+.+++|+ |++ ..+++++.|++
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA---DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE---CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCCEEEEe---CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCe
Confidence 34679999999855444443 38999999999 5667764 45788899999998 555 78888999999
Q ss_pred EEEEECCCCce----EEeccccCC------------ceEEEEEcCCCcEEEEEcCCcEEEEeC-C-CcEEEEeccCCCCc
Q 011970 295 LQILDVRNAEL----MEVSRTEFM------------TPSAFIFLYENQLFLTFRNRTVAVWNF-R-GELVTSFEDHLLWH 356 (474)
Q Consensus 295 IkIWDv~tg~~----~~~l~~h~~------------~v~sv~Fspdg~llaS~sD~tIklWd~-~-G~ll~tl~gH~~~~ 356 (474)
|+|||++++++ +.++.+|.. .|.+++|+|+|++|+++++++|+|||+ . ++++.++.+|....
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccc
Confidence 99999999997 788888886 899999999999999998999999999 4 89999999997532
Q ss_pred C--------CC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 357 P--------DC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 357 ~--------~~--~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
. +| .+..++|+|||++|++++. ||+|+|||+.+|+++ ++.+|.............. .
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----------dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 397 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----------NNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRK-V 397 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----------TTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCC-E
T ss_pred ccccccccccccccceEEEECCCCCEEEEecc-----------CCEEEEEEcCCCcce-eeeecccccccccccCCcc-c
Confidence 1 00 0124999999999999876 999999999999987 7778764111000000000 0
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.........+.......-..|..++|+|+|+.||+|+.|+ +.+|+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 00000000000000012223789999999999999999988 56664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=320.10 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=235.2
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
....+|.+++..++.++.| +++.|++++ .| ++++|||+.+|++... +. +|...+..++|+ |++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs----~d------g~i~vwd~~~~~~~~~---~~-~h~~~V~~l~~~-~~~ 174 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGA----DD------KMIRVYDSINKKFLLQ---LS-GHDGGVWALKYA-HGG 174 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEE----TT------SCEEEEETTTTEEEEE---EC-CCSSCEEEEEEC-STT
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEc----CC------CcEEEEECCCCcEEEE---Ee-CCCcCEEEEEEc-CCC
Confidence 3566888855556677666 567999976 55 6999999999986432 22 355677899998 677
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc--CC-ceEEEEecCCCCccEEEEecCCCe------------
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS--PG-IMLLIFNRSSSHVPLKILSIEDGT------------ 261 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS--pg-~~la~~s~~s~D~tIkLWdi~tG~------------ 261 (474)
+|++|+.|++|+|||+.+++++.++. ...|.+++|+ |+ ..++++ +.|++|++||+++++
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~~ 250 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVWKLPKESSVPDHGEEHDYP 250 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEE---ETTSCEEEEECCCCCCC------CCSS
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEE---cCCCcEEEeeCCCCcccccccccCCcc
Confidence 89999999999999999999999986 4689999999 44 556655 458999999999887
Q ss_pred -----------EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEE
Q 011970 262 -----------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 262 -----------~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
++.++.+|...+..+. +++..+++++.|++|++||+++++++..+.+|...|.+++|+|++++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 251 LVFHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp EEESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eEeeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEE
Confidence 4667888888888775 55789999999999999999999999999999999999999999999999
Q ss_pred Ec-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 331 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 331 ~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
++ |++|++||++ |+++.++.+|... |..++|+ +++|++++. ||+|++||+.++++..++.
T Consensus 328 g~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 328 ASMDTTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE
T ss_pred EeCCCcEEEEECCCCcEEEEEeCCCCc-----EEEEEEc--CCEEEEEeC-----------CCcEEEEECCCCceeeeec
Confidence 99 9999999995 9999999999987 6889987 689999987 9999999999998877764
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|.. .+..++|+|+|+.|++|+ ||+|+|||.
T Consensus 390 -~~~----------------------------------~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 390 -HTN----------------------------------LSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp -CTT----------------------------------CCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred -CCC----------------------------------CccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 332 567799999999999999 999999984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=338.34 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=217.1
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEeec-CCCceEEEEEEee-CCCEEEEEEeecCCCccceeee
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
+...|.+|+|+ +.+||+|+.||+|+|||+.+++..+.+.. +|...|.+|+|+| |++.|+|+| .| +
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s----~D------~ 187 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS----ME------G 187 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC----SS------S
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe----CC------C
Confidence 56679999997 56999999999999999998876555432 3788999999998 688999965 55 6
Q ss_pred EEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-C
Q 011970 162 STKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-G 237 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g 237 (474)
+++|||+..+.+. .+... ....++.+++|+ |+|++|++|+.|++|+|||+. ++++.++. ...|.+|+|+| +
T Consensus 188 ~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 188 TTRLQDFKGNILR---VFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp CEEEEETTSCEEE---EEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTC
T ss_pred EEEEeeccCCcee---EEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCC
Confidence 8999998765531 11221 233456689998 799999999999999999985 56666664 56899999998 4
Q ss_pred c-eEEEEecCCCCccEEEEecCCCeEEEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 238 I-MLLIFNRSSSHVPLKILSIEDGTVLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 238 ~-~la~~s~~s~D~tIkLWdi~tG~~L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
. +++++ +.|++|+|||+++++....+ .+|...|.+|+|+ |++.+|++++.|++|+|||+.++++...+..|.
T Consensus 263 ~~~~~s~---s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 263 DWFLATA---SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp SSEEEEE---ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred ceEEEEe---cCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 4 45554 45899999999998765544 4788899999997 678899999999999999999999887766654
Q ss_pred C------ceEEEEEcCCCcEEEEEc-------------CCcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEE-EECCCCC
Q 011970 314 M------TPSAFIFLYENQLFLTFR-------------NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNI-YITSDQD 371 (474)
Q Consensus 314 ~------~v~sv~Fspdg~llaS~s-------------D~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~sv-afSpDg~ 371 (474)
. .+....|+|++.++++++ +++|++||.. |+++.++. +|... |.++ +|+|||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-----v~s~~~fspdg~ 413 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-----ISSLNEFNPMGD 413 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-----CCCEEEECTTSS
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-----EEEEEEECCCCC
Confidence 2 233445666666555542 4689999995 99998875 56665 4565 7999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+||||+ |++|+|||+.+|+..
T Consensus 414 ~lasg~------------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 414 TLASAM------------GYHILIWSQQEARTR 434 (435)
T ss_dssp CEEEEC------------SSEEEECCCC-----
T ss_pred EEEEEc------------CCcEEEEECCcCeee
Confidence 999875 789999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=326.61 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=221.1
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccc---cceee-EeecCCCceEEEEEEeeCCCEEEEEEeecCCCcccee
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRET---NRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~t---g~~l~-~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk 159 (474)
|...|.+|.|+ +++||+++.||+|++||+.+ +++.. .+...|...|.+|+|+|+++.|++++ .|
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----~d----- 132 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS----KD----- 132 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE----TT-----
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe----CC-----
Confidence 45666666665 67999999999999999987 55332 33324788999999999999999976 55
Q ss_pred eeEEEEeEec---cCCCCCccceee---e---c--cccCceEEE--EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC
Q 011970 160 CRSTKIEYIR---RGKPDSGFALFE---S---E--SLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD 226 (474)
Q Consensus 160 ~~~~~iw~i~---~G~~~~~~~lf~---~---~--~~~~~~~V~--Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~ 226 (474)
++++||++. .|++........ . . +...+..++ |+ ++|++|++++.|++|++||+.+++++.++..
T Consensus 133 -g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 -GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp -SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 699999994 776532111000 0 0 112222333 44 6899999999999999999999999998854
Q ss_pred ----CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEe---cCCCeEEEEeCCCcEEE
Q 011970 227 ----KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIE---QFNEKLLVKQENENLQI 297 (474)
Q Consensus 227 ----~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~---~~~~~ll~~~~D~tIkI 297 (474)
..|.+++|+|+ ..|+++ +.|++|+|||++++++++++. .|...+.+++|.+ +++..+++++.|++|+|
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILG---TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEE---ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEECCCCCEEEEE---cCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 68999999984 455555 458999999999999999997 6777899997764 34456777889999999
Q ss_pred EECCCCceEEeccc--------------------------cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 298 LDVRNAELMEVSRT--------------------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 298 WDv~tg~~~~~l~~--------------------------h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
||++++++++.+.+ |...|++++|+ ++++|++++ |++|++||+. |+++.++
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99999999887764 44567888888 779999999 9999999995 9999888
Q ss_pred cc-------------------------------------CCCCcCCCCeeEEEECCC--CCEEEEEecCCCccccccCCC
Q 011970 350 ED-------------------------------------HLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 350 ~g-------------------------------------H~~~~~~~~v~svafSpD--g~~LaS~s~~~~~~~~~~s~D 390 (474)
.+ |... |++|+|+++ +.+|+||+. |
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----I~~i~~~~~~~~~~l~s~~~-----------d 430 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI-----INSISTCEVDETPLLVACDN-----------S 430 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCC-----EEEEEEEESSSSEEEEEEET-----------T
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccc-----eeeEeeeccCCceEEEEEcC-----------C
Confidence 87 4444 799999998 889999987 9
Q ss_pred CeEEEEe
Q 011970 391 GSINVSS 397 (474)
Q Consensus 391 gtIklWd 397 (474)
|+|+||+
T Consensus 431 G~I~iw~ 437 (437)
T 3gre_A 431 GLIGIFQ 437 (437)
T ss_dssp SCEEEEC
T ss_pred ceEEEeC
Confidence 9999995
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=318.05 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=230.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
+.++.|++ +.|++++ .| +.++||++.+|++.. ++...+...+.+|+|+ |||++|++|+.|++|+
T Consensus 96 ~~~~~~s~--~~l~~~~----~d------~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVA----LE------RNVYVWNADSGSVSA---LAETDESTYVASVKWS-HDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEE----ET------TEEEEEETTTCCEEE---EEECCTTCCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEE----CC------CeEEEeeCCCCcEeE---eeecCCCCCEEEEEEC-CCCCEEEEECCCCeEE
Confidence 44455554 5577765 33 589999999998733 3333345667799998 7999999999999999
Q ss_pred EeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 212 VFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|||+.+++++.++. ...|.+++|++ ..++++ +.|++|++||++ .++++.++.+|...+..++|+ |++..+++
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 234 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSG---SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLAS 234 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEET-TEEEEE---ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred EEECcCCeEEEEecCCCCceEEEEECC-CEEEEE---cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-CCCCEEEE
Confidence 99999999999886 46899999965 566665 457999999999 578899999999999999998 57888889
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC-cEEEEEc---CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeE
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 363 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg-~llaS~s---D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~s 363 (474)
++.|++|+|||+++++++..+.+|...|.+++|+|++ .++++++ |++|++||++ |+++.+++.+. . |.+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~-~-----v~~ 308 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-Q-----VTS 308 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS-C-----EEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC-c-----EEE
Confidence 9999999999999999999999999999999999965 6777753 9999999995 99999997543 3 799
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE--ecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 364 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 364 vafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
++|+|||++|++++ ++.||+|+|||+.++++... +.+|..
T Consensus 309 ~~~s~~~~~l~~~~---------g~~dg~i~v~~~~~~~~~~~~~~~~h~~----------------------------- 350 (401)
T 4aez_A 309 LIWSPHSKEIMSTH---------GFPDNNLSIWSYSSSGLTKQVDIPAHDT----------------------------- 350 (401)
T ss_dssp EEECSSSSEEEEEE---------CTTTCEEEEEEEETTEEEEEEEEECCSS-----------------------------
T ss_pred EEECCCCCeEEEEe---------ecCCCcEEEEecCCccceeEEEecCCCC-----------------------------
Confidence 99999999999954 12499999999999876654 678885
Q ss_pred cccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 442 GEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++++|+|||+.|++|+.||+|++|+.
T Consensus 351 -----~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 351 -----RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp -----CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred -----CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 8999999999999999999999999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=343.21 Aligned_cols=284 Identities=12% Similarity=0.087 Sum_probs=244.1
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk 199 (474)
..++|.+ |.+.|.+++|||||+.||+++ .+ .+++||++.+|+.... +. .+...+..++|+ |||+
T Consensus 5 ~~~~~~~-h~~~v~~i~~sp~~~~la~~~----~~------g~v~iwd~~~~~~~~~---~~-~~~~~v~~~~~s-~~~~ 68 (814)
T 3mkq_A 5 IKKTFSN-RSDRVKGIDFHPTEPWVLTTL----YS------GRVEIWNYETQVEVRS---IQ-VTETPVRAGKFI-ARKN 68 (814)
T ss_dssp CEEEEEE-ECSCEEEEEECSSSSEEEEEE----TT------SEEEEEETTTTEEEEE---EE-CCSSCEEEEEEE-GGGT
T ss_pred cceeeec-CCCceEEEEECCCCCEEEEEe----CC------CEEEEEECCCCceEEE---Ee-cCCCcEEEEEEe-CCCC
Confidence 4567786 778999999999999999976 44 5899999999886442 22 244567799999 7999
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeE
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~ 275 (474)
+||+++.|++|+|||+.+++++.++. ...|.+++|+|++ .|+++ +.|++|++||++++ .+..++.+|.+.+..
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE---cCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 99999999999999999999998886 4689999999854 66655 45899999999998 888999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcC--CCcEEEEEc-CCcEEEEeCC-CcEEEEec
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFE 350 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fsp--dg~llaS~s-D~tIklWd~~-G~ll~tl~ 350 (474)
++|+|.++..+++++.|++|++||+.+++....+..|. ..+..++|+| ++++|++++ |++|++||++ ++++.++.
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 99985467788889999999999999998877665544 8899999999 999999999 9999999995 99999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
+|... |..++|+|||++|++++. ||+|++||+.+++++.++..|..
T Consensus 226 ~~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~~~~------------------ 271 (814)
T 3mkq_A 226 GHMSN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE------------------ 271 (814)
T ss_dssp CCSSC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCSEEEEECCSSS------------------
T ss_pred CCCCC-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeecCCC------------------
Confidence 99876 789999999999999986 99999999999999999999875
Q ss_pred ccccccccccccccccCEEEEEEcCCCC--EEEEEcCCCcEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~--~LaSgs~DgtVklWd 473 (474)
.|++++|+|+|+ .+++|+ |+.+.+|+
T Consensus 272 ----------------~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 272 ----------------RSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp ----------------SEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred ----------------cEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 899999999997 466666 55566665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=315.73 Aligned_cols=283 Identities=9% Similarity=0.099 Sum_probs=229.0
Q ss_pred EEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc
Q 011970 91 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 91 V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
+..+.++++.+++++.||+|++|+..+|+.+..+...|...|.+++|+|+|+.|++++ .| ..++||++.+
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~d------g~i~iwd~~~ 165 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL----GN------GLVDIYDVES 165 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE----TT------SCEEEEETTT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC----CC------CeEEEEECcC
Confidence 3446666777899999999999999999999999887889999999999999999976 44 5899999999
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEc--CCcEEEEEEcC-CceEEEEecC
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS--DKHVQEIKISP-GIMLLIFNRS 246 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~ 246 (474)
++.... +. .+...+..++|+ +++|++++.|++|++||+. .+.++.++. ...|.+++|+| +..|+++
T Consensus 166 ~~~~~~---~~-~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--- 235 (401)
T 4aez_A 166 QTKLRT---MA-GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG--- 235 (401)
T ss_dssp CCEEEE---EC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE---
T ss_pred CeEEEE---ec-CCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE---
Confidence 886432 22 244566788885 5799999999999999998 455666665 56899999998 4566655
Q ss_pred CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-Ee--CCCcEEEEECCCCceEEeccccCCceEEEEEcC
Q 011970 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 323 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp 323 (474)
+.|++|++||+++++++.++.+|...+.+++|+ |++..+++ ++ .|++|++||+.+++++..+. |...+.+++|+|
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~ 313 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP 313 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred eCCCeEEEccCCCCCccEEecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC
Confidence 457999999999999999999999999999998 45555555 43 79999999999999998876 456899999999
Q ss_pred CCcEEEE--Ec-CCcEEEEeCC-CcEEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 324 ENQLFLT--FR-NRTVAVWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 324 dg~llaS--~s-D~tIklWd~~-G~ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
++++|++ ++ |++|+|||+. +++.. .+.+|... |..++|+|||++|++++. ||+|+|||
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~~~-----------dg~i~iw~ 377 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----VLYSALSPDGRILSTAAS-----------DENLKFWR 377 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----CCEEEECTTSSEEEEECT-----------TSEEEEEE
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC-----EEEEEECCCCCEEEEEeC-----------CCcEEEEE
Confidence 9999999 55 9999999994 66554 57799876 689999999999999876 99999999
Q ss_pred CCCCeEEEEecCCC
Q 011970 398 ILTGKCLAKINATN 411 (474)
Q Consensus 398 i~tG~cl~tl~gH~ 411 (474)
+.+|+++.++..+.
T Consensus 378 ~~~~~~~~~~~~~~ 391 (401)
T 4aez_A 378 VYDGDHVKRPIPIT 391 (401)
T ss_dssp CCC-----------
T ss_pred CCCCcccccccccc
Confidence 99999998775554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=299.61 Aligned_cols=238 Identities=16% Similarity=0.187 Sum_probs=204.4
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEE
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg----~~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIk 253 (474)
+|...|.+++|+ |||++||+|+.|++|+|||+.++ +++.++. ...|.+++|+| +.+|+++ +.|++|+
T Consensus 9 gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~---~~dg~v~ 84 (351)
T 3f3f_A 9 GHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA---SYDKTVK 84 (351)
T ss_dssp CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE---ETTSCEE
T ss_pred ccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE---cCCCeEE
Confidence 356678899998 79999999999999999999977 4666664 46899999998 6677766 4489999
Q ss_pred EEecCCC---------eEEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCceEEecc-------------
Q 011970 254 ILSIEDG---------TVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSR------------- 310 (474)
Q Consensus 254 LWdi~tG---------~~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~~~~~l~------------- 310 (474)
|||++++ +++.++.+|...+..++|++.. +..+++++.|++|+|||+++++++..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999998 7799999999999999998432 6788889999999999999988654432
Q ss_pred ccCCceEEEEEcCC---CcEEEEEc-CCcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCC----CEEEEEecC
Q 011970 311 TEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKA 379 (474)
Q Consensus 311 ~h~~~v~sv~Fspd---g~llaS~s-D~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg----~~LaS~s~~ 379 (474)
+|...+.+++|+|+ +++|++++ |+.+.+|+.. ++. +.++.+|... |.+++|+|+| ++|++++.
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~p~~~~~~~~l~s~~~- 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL-----IRSISWAPSIGRWYQLIATGCK- 238 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC-----EEEEEECCCSSCSSEEEEEEET-
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc-----eeEEEECCCCCCcceEEEEEcC-
Confidence 68889999999997 99999998 9999888875 664 8899999887 7999999999 89999987
Q ss_pred CCccccccCCCCeEEEEeCCCC----------------------------------------------eEEEEecCCCCC
Q 011970 380 EPEDQWMEGSAGSINVSSILTG----------------------------------------------KCLAKINATNCS 413 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG----------------------------------------------~cl~tl~gH~~~ 413 (474)
||+|+|||+.++ +++.++.+|..
T Consensus 239 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 307 (351)
T 3f3f_A 239 ----------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG- 307 (351)
T ss_dssp ----------TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS-
T ss_pred ----------CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-
Confidence 999999999876 55566666653
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|+|||+.||||+.||+|+||+.
T Consensus 308 ---------------------------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 308 ---------------------------------EVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ---------------------------------CEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ---------------------------------cEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 8999999999999999999999999973
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=294.68 Aligned_cols=270 Identities=11% Similarity=0.145 Sum_probs=215.6
Q ss_pred EEee-ccEEEEeeCCCeEEeeeccccceeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC
Q 011970 94 IVAA-RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (474)
Q Consensus 94 i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G 171 (474)
|.+| +.+||++ .|++|+|||.+||++++++.+ .|...|.+|+|+|+|+.||++| .| ++++||++.+|
T Consensus 31 l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs----~D------g~v~iw~~~~~ 99 (318)
T 4ggc_A 31 VDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT----SS------AEVQLWDVQQQ 99 (318)
T ss_dssp EEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE----TT------SEEEEEETTTT
T ss_pred EEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE----CC------CcEEEeecCCc
Confidence 4455 5667665 599999999999999998875 3667899999999999999976 55 69999999999
Q ss_pred CCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEcC-CceEEEEecCC
Q 011970 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKISP-GIMLLIFNRSS 247 (474)
Q Consensus 172 ~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~--~~~V~~vafSp-g~~la~~s~~s 247 (474)
++... +. +|...+ ..++ +++++|++++.|+.+++|+..++. .+.++. ...+..++|++ +..++++ +
T Consensus 100 ~~~~~---~~-~h~~~~--~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~ 169 (318)
T 4ggc_A 100 KRLRN---MT-SHSARV--GSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG---G 169 (318)
T ss_dssp EEEEE---EE-CCSSCE--EEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE---E
T ss_pred eeEEE---ec-CccceE--EEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE---e
Confidence 87432 22 233333 3444 467899999999999999998765 555554 46899999997 5566655 4
Q ss_pred CCccEEEEecCCCeE----EEEEeecCcceeEEEEEecCCCeEEE--EeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 248 SHVPLKILSIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~----L~tl~~h~~~v~~V~F~~~~~~~ll~--~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
.|++|+|||+++|+. +.....|.+.+..++|.+..+..+.. ++.|++|+|||.++++...... |...+..+.|
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~ 248 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILW 248 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeee
Confidence 589999999998864 34555677889999998544443333 3589999999999998877644 5567899999
Q ss_pred cCCCcEEEEE--c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 322 LYENQLFLTF--R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 322 spdg~llaS~--s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+|+++.++++ + |++|+|||++ |+++.+|++|... |++++|+|||++|||||. ||+|||||
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~~v~iWd 312 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWR 312 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEEC
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEE
Confidence 9999887764 4 9999999995 9999999999987 799999999999999987 99999999
Q ss_pred CCCC
Q 011970 398 ILTG 401 (474)
Q Consensus 398 i~tG 401 (474)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=320.43 Aligned_cols=244 Identities=10% Similarity=0.087 Sum_probs=193.3
Q ss_pred eeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeecccc--ceeeEeecCCCceEEEEEEeeCCCEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNNDSL 144 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg--~~l~~l~g~~~~~i~sv~fspdg~~L 144 (474)
+.+..|+.++.++.|.|+ +++||+++.||+|++|++.++ +++.++.+ |...|.+++|+|+|+.|
T Consensus 5 ~~~~~~~~~v~~~~~s~~-------------g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l 70 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQ-------------RTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRI 70 (377)
T ss_dssp EEEEECSSCCSCCEECSS-------------SSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCE
T ss_pred eeEecCCCcEEEEEECCC-------------CCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEE
Confidence 445556666777666666 999999999999999999998 89999997 78899999999999999
Q ss_pred EEEEeecCCCccceeeeEEEEeEeccCC-CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---E
Q 011970 145 ITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---M 220 (474)
Q Consensus 145 is~S~~~s~d~s~Lk~~~~~iw~i~~G~-~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~ 220 (474)
++++ .| ++++||++..++ +.....+.. +...+..++|+ |||++|++++.|++|++||+.+++ +
T Consensus 71 ~s~s----~d------~~v~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 71 VTCS----QD------RNAYVYEKRPDGTWKQTLVLLR--LNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EEEE----TT------SSEEEC------CCCCEEECCC--CSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCC
T ss_pred EEEe----CC------CeEEEEEcCCCCceeeeeEecc--cCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCccccee
Confidence 9976 45 689999999887 211111222 34567799998 799999999999999999999887 4
Q ss_pred EEEEc---CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecC------------------CCeEEEEEeecCcceeEEEE
Q 011970 221 LYSIS---DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIE------------------DGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 221 l~tl~---~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~------------------tG~~L~tl~~h~~~v~~V~F 278 (474)
+..+. ...|.+++|+|+ .+|+++ +.|++|++||++ +|+++.++ +|...+.+++|
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAG---CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEE---ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEE---eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 66664 457999999985 556655 458999999995 57889999 89999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 342 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~ 342 (474)
+ |++..|++++.|++|+|||+.++++ +..+.+|...|.+++|+|||++|++++|+.+.+|+..
T Consensus 214 s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 214 S-PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp C-TTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred C-CCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 8 6788899999999999999999998 7888999999999999999999999994444577763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=317.93 Aligned_cols=257 Identities=13% Similarity=0.079 Sum_probs=200.9
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLT 202 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~La 202 (474)
+. +|.+.|++|+|+|+|+.|||+| .| ++++|||+..|+...- ..+. +|...|..|+|++| +|++||
T Consensus 9 ~~-~H~~~V~~v~~s~~g~~lasgs----~D------~~v~lwd~~~~~~~~~-~~l~-gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 9 DT-SHEDMIHDAQMDYYGTRLATCS----SD------RSVKIFDVRNGGQILI-ADLR-GHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEE----TT------TEEEEEEEETTEEEEE-EEEE-CCSSCEEEEEECCGGGSSCEE
T ss_pred cc-cccCeEEEeeEcCCCCEEEEEe----CC------CeEEEEEecCCCcEEE-EEEc-CCCccEEEEEeCCCCCCCEEE
Confidence 44 4889999999999999999976 55 6999999988753110 1122 35667889999854 599999
Q ss_pred EecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC---ceEEEEecCCCCccEEEEecCCCe---EEEEEeecCcc
Q 011970 203 YSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLHR 272 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg---~~la~~s~~s~D~tIkLWdi~tG~---~L~tl~~h~~~ 272 (474)
||+.|++|||||+++++ ++.++. ...|.+|+|+|+ .+|+++ +.|++|+|||++++. ++..+.+|...
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg---s~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG---SSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE---CSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE---cCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 99999999999999884 666664 467999999984 466665 568999999998863 24566788889
Q ss_pred eeEEEEEecC----------------CCeEEEEeCCCcEEEEECCCC---ceEEeccccCCceEEEEEcCCC----cEEE
Q 011970 273 NKKVDFIEQF----------------NEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYEN----QLFL 329 (474)
Q Consensus 273 v~~V~F~~~~----------------~~~ll~~~~D~tIkIWDv~tg---~~~~~l~~h~~~v~sv~Fspdg----~lla 329 (474)
+..++|+|.. +..|++++.|++|+|||++++ +++.++.+|...|.+++|+|++ ++||
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 9999998531 357778899999999999865 5778899999999999999987 8999
Q ss_pred EEc-CCcEEEEeCCC----c-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CC-
Q 011970 330 TFR-NRTVAVWNFRG----E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG- 401 (474)
Q Consensus 330 S~s-D~tIklWd~~G----~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG- 401 (474)
|++ |++|+|||++. + ....+.+|..+ |++++|+|||++||+++. |++|+||+.. .|
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----v~~v~~sp~g~~las~~~-----------D~~v~lw~~~~~g~ 296 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGG-----------DNKVTLWKESVDGQ 296 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSC-----EEEEEECTTTCCEEEEES-----------SSCEEEEEECTTSC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCc-----EEEEEEcCCCCEEEEEcC-----------CCeEEEEEECCCCc
Confidence 999 99999999852 1 23456678766 799999999999999987 9999999975 34
Q ss_pred -eEEEEecCCCC
Q 011970 402 -KCLAKINATNC 412 (474)
Q Consensus 402 -~cl~tl~gH~~ 412 (474)
+|+.++...+.
T Consensus 297 ~~~~~~~~~~~~ 308 (316)
T 3bg1_A 297 WVCISDVNKGQG 308 (316)
T ss_dssp EEEEEECC----
T ss_pred EEEeeeccCCCC
Confidence 67888876553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=321.61 Aligned_cols=265 Identities=15% Similarity=0.269 Sum_probs=230.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|...|.++.| +|+.|++++ .| .+++|||+.+|++... +. +|...+.+++| +|++|++|+.|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~----~d------g~i~iwd~~~~~~~~~---~~-~h~~~v~~l~~---~~~~l~sg~~d 192 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGL----RD------NTIKIWDKNTLECKRI---LT-GHTGSVLCLQY---DERVIITGSSD 192 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEE----SS------SCEEEEESSSCCEEEE---EC-CCSSCEEEEEC---CSSEEEEEETT
T ss_pred CCCcEEEEEE--CCCEEEEEe----CC------CeEEEEeCCCCeEEEE---Ec-CCCCcEEEEEE---CCCEEEEEcCC
Confidence 5567888776 899999976 45 6899999999987432 22 24456667777 57899999999
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE---EEEeecCcceeEEEEEecC
Q 011970 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L---~tl~~h~~~v~~V~F~~~~ 282 (474)
++|+|||+.+++++.++. ...|.+++|+++ .++++ +.|++|++||+++++.+ ..+.+|...+..++| +
T Consensus 193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~ 265 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTC---SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---D 265 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEE---ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---E
T ss_pred CeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEe---eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---C
Confidence 999999999999999886 468999999865 66666 45899999999998766 678889999999998 4
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
+..+++++.|++|++||+++++++..+.+|...+.+++| +++++++++ |++|++||++ |+++.++.+|...
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----- 338 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----- 338 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc-----
Confidence 788999999999999999999999999999999999988 578999998 9999999995 9999999999987
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------EEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|.+++| |+++|++|+. ||+|+|||+.+++ |+.++.+|..
T Consensus 339 v~~~~~--~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~------------------- 386 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG------------------- 386 (435)
T ss_dssp EEEEEC--CSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-------------------
T ss_pred EEEEEe--cCCEEEEEeC-----------CCcEEEEECCCCCCccccccchheeeccCCCC-------------------
Confidence 688888 8999999987 9999999998888 9999999986
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++++| |++.|+||+.||+|++||.
T Consensus 387 ---------------~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 387 ---------------RVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ---------------CCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred ---------------CeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 8999999 8899999999999999984
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=320.50 Aligned_cols=276 Identities=11% Similarity=0.133 Sum_probs=229.7
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+...|..+.+.++.||+++.||+|++||..+++++.++.+ |...|.++.| +++.|++++ .| +++++|
T Consensus 132 ~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~sg~----~d------g~i~vw 198 (435)
T 1p22_A 132 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGS----SD------STVRVW 198 (435)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEE----TT------SCEEEE
T ss_pred CCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEEEEc----CC------CeEEEE
Confidence 5567899999999999999999999999999999999997 7788999999 889999976 45 699999
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE---EEEc--CCcEEEEEEcCCceEE
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKISPGIMLL 241 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l---~tl~--~~~V~~vafSpg~~la 241 (474)
++.+|++... +. .+...+..++|+ +.+|++|+.|++|++||+.+++.+ ..+. ...|.+++| .+..++
T Consensus 199 d~~~~~~~~~---~~-~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~ 270 (435)
T 1p22_A 199 DVNTGEMLNT---LI-HHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIV 270 (435)
T ss_dssp ESSSCCEEEE---EC-CCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEE
T ss_pred ECCCCcEEEE---Ec-CCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEE
Confidence 9999987442 22 234566788886 348999999999999999988754 4443 468999999 566777
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
++ +.|++|++||+++++++.++.+|...+..++|. +..+++++.|++|+|||+++++++.++.+|...|.+++|
T Consensus 271 s~---~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 271 SA---SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp EE---ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred EE---eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 76 448999999999999999999999999999984 678899999999999999999999999999999999988
Q ss_pred cCCCcEEEEEc-CCcEEEEeCC-Cc---------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 322 LYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~~-G~---------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
++++|++++ |++|++||+. ++ ++.++.+|... |.+++| ||++|++++. |
T Consensus 345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~s~s~-----------D 404 (435)
T 1p22_A 345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------D 404 (435)
T ss_dssp --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------S
T ss_pred --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-----eEEEEe--CCCEEEEEeC-----------C
Confidence 889999999 9999999984 66 99999999987 678988 8999999876 9
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 011970 391 GSINVSSILTGKCLAKINA 409 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~g 409 (474)
|+|+|||+.++........
T Consensus 405 g~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 405 DTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SEEEEEC------------
T ss_pred CEEEEEECCCCCCcccCCC
Confidence 9999999988776655443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=313.07 Aligned_cols=283 Identities=15% Similarity=0.252 Sum_probs=237.4
Q ss_pred eeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEE
Q 011970 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (474)
Q Consensus 113 W~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~ 192 (474)
|....-+....|.++...++.+ ++++|+.|++++ .| ++++||++.+|++... +. +|...+.+++
T Consensus 103 w~~~~~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~----~d------g~i~vwd~~~~~~~~~---~~-~h~~~v~~~~ 166 (445)
T 2ovr_B 103 WRRGELKSPKVLKGHDDHVITC--LQFCGNRIVSGS----DD------NTLKVWSAVTGKCLRT---LV-GHTGGVWSSQ 166 (445)
T ss_dssp HHHSCCCCCEEEECSTTSCEEE--EEEETTEEEEEE----TT------SCEEEEETTTCCEEEE---CC-CCSSCEEEEE
T ss_pred ccCCCcceeEEecccCCCcEEE--EEEcCCEEEEEE----CC------CcEEEEECCCCcEEEE---Ec-CCCCCEEEEE
Confidence 5444445677888844445555 556799999976 45 6999999999987442 22 2455677899
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|+ +.+|++|+.|++|++||+++++++.++. ...|.+++|+++ .++++ +.|++|++||+++|+++.++.+|.
T Consensus 167 ~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~---s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 167 MR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSG---SRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp EE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEE---ETTSEEEEEESSSCCEEEEEECCS
T ss_pred ec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEE---eCCCEEEEEECCCCcEEEEEcCCc
Confidence 97 4699999999999999999999999986 467999999854 56665 457999999999999999999999
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
..+..++| ++..+++++.|++|++||+++++++..+.+|...+.++.| +++++++++ |++|++||++ |+++.+
T Consensus 240 ~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 240 AAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp SCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 99999998 4788999999999999999999999999999999999999 889999998 9999999995 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+.+|... +..+.+ ++++|++++. ||+|++||+.+|+++.++.+|..+.
T Consensus 315 ~~~~~~~-----v~~~~~--~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~-------------- 362 (445)
T 2ovr_B 315 LTGHQSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNKHQ-------------- 362 (445)
T ss_dssp ECCCCSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTSCS--------------
T ss_pred EcCCccc-----EEEEEE--eCCEEEEEeC-----------CCeEEEEECCCCcEEEEEccCCCCC--------------
Confidence 9999876 455554 7889999986 9999999999999999999843210
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..|++++|+ ++.|++|+.||+|++||.
T Consensus 363 -----------------~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 363 -----------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -----------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -----------------CCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 189999996 689999999999999984
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=295.65 Aligned_cols=276 Identities=12% Similarity=0.110 Sum_probs=227.2
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+.++++++.|++|++||..+|+++..+.+ | ..+.+++|+|+|+.|+.++ +.+ .++++||+.+|++..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~---~~d------~~i~v~d~~~~~~~~-- 68 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPV-G-SNPMGAVISPDGTKVYVAN---AHS------NDVSIIDTATNNVIA-- 68 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEE---GGG------TEEEEEETTTTEEEE--
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeec-C-CCcceEEECCCCCEEEEEC---CCC------CeEEEEECCCCeEEE--
Confidence 35789999999999999999999999986 5 3489999999999874332 344 689999999998743
Q ss_pred ceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKI 254 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkL 254 (474)
.+... ..+..++|+ |||+.| ++++.|++|++||+++++++..+. ...+.+++|+|++ .++.+. +.|++|++
T Consensus 69 -~~~~~--~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~ 142 (391)
T 1l0q_A 69 -TVPAG--SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSV 142 (391)
T ss_dssp -EEECS--SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEE
T ss_pred -EEECC--CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEe--CCCCEEEE
Confidence 22222 267789998 799876 566678999999999999988876 4679999999854 454443 55889999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
||+.+|+++.++..| ..+..++|+ |++..+++ ++.|++|++||+++++++..+.. ...+..++|+|+|++|++++
T Consensus 143 ~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 143 INTVTKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EETTTTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEec
Confidence 999999999999876 456899987 66777754 56899999999999999887664 45889999999999887764
Q ss_pred ---CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 333 ---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 333 ---D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L-aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
|++|++||+. ++++.++..|.. +..++|+|||++| ++++. |++|++||+.+|++++++
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~-----------d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------XNTVSVIDTATNTITATM 282 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEE
T ss_pred CcCCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCC-----------CCEEEEEECCCCcEEEEE
Confidence 7899999995 999999998764 5789999999988 55544 999999999999999999
Q ss_pred cCCCC
Q 011970 408 NATNC 412 (474)
Q Consensus 408 ~gH~~ 412 (474)
..|..
T Consensus 283 ~~~~~ 287 (391)
T 1l0q_A 283 AVGKN 287 (391)
T ss_dssp ECSSS
T ss_pred ECCcC
Confidence 98874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=291.39 Aligned_cols=258 Identities=13% Similarity=0.178 Sum_probs=211.1
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc-cceeeeccccCceEEEEeCC-CCeE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDV-NGKV 200 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~~-nGk~ 200 (474)
++.+ |.+.|.+++|+|+|+.|++++ .| .+++||++..+..... ...+. ++...+..++|++. ||++
T Consensus 6 ~~~g-H~~~v~~~~~~~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 6 FDSG-HDDLVHDVVYDFYGRHVATCS----SD------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp EECC-CSSCEEEEEECSSSSEEEEEE----TT------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSE
T ss_pred cCcc-cccceeEEEEcCCCCEEEEee----CC------CeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCE
Confidence 4555 889999999999999999976 45 6999999987653211 01122 24566779999843 6999
Q ss_pred EEEecCCCcEEEeecCCC---------eEEEEEc--CCcEEEEEEcCC---ceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 201 LTYSAQDSIYKVFDLKNY---------TMLYSIS--DKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg---------~~l~tl~--~~~V~~vafSpg---~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
|++++.|++|+|||+.++ +++.++. ...|.+++|+|+ ..++++ +.|++|+|||+++++++.++
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL---GNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTCEEEEEECSSTTCTTCC
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe---cCCCcEEEecCCChHHhccc
Confidence 999999999999999987 5677775 468999999984 456665 45899999999999877665
Q ss_pred e-------------ecCcceeEEEEEec--CCCeEEEEeCCCcEEEEECCCCce--EEeccccCCceEEEEEcCCC----
Q 011970 267 Y-------------HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYEN---- 325 (474)
Q Consensus 267 ~-------------~h~~~v~~V~F~~~--~~~~ll~~~~D~tIkIWDv~tg~~--~~~l~~h~~~v~sv~Fspdg---- 325 (474)
. .|...+..++|++. .+..+++++.|+.+.+|+..+++. +..+.+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 4 57778899999853 377888899999999999888876 67788999999999999998
Q ss_pred cEEEEEc-CCcEEEEeCC-C----------------------------------------------cEEEEeccCCCCcC
Q 011970 326 QLFLTFR-NRTVAVWNFR-G----------------------------------------------ELVTSFEDHLLWHP 357 (474)
Q Consensus 326 ~llaS~s-D~tIklWd~~-G----------------------------------------------~ll~tl~gH~~~~~ 357 (474)
++|++++ |++|++||++ + +++.++.+|...
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-- 308 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE-- 308 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC--
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc--
Confidence 8999999 9999999995 4 788899999887
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEecCCC
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATN 411 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gH~ 411 (474)
|++++|+|||++|||++. ||+|+|||+.++ +|+.++..|+
T Consensus 309 ---v~~~~~s~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~~~ 351 (351)
T 3f3f_A 309 ---VWSVSWNLTGTILSSAGD-----------DGKVRLWKATYSNEFKCMSVITAQQ 351 (351)
T ss_dssp ---EEEEEECSSSCCEEEEET-----------TSCEEEEEECTTSCEEEEEEEC---
T ss_pred ---EEEEEEcCCCCEEEEecC-----------CCcEEEEecCcCcchhheeehcccC
Confidence 799999999999999987 999999999988 5667766653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=296.29 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=202.2
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecC--CCeEEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~--tg~~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIkLWd 256 (474)
|...|.+++|+ |||++||+|+.|++|+|||+. +++++.++. ...|.+++|+| +..|+++ +.|++|+|||
T Consensus 10 h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---~~dg~v~iwd 85 (379)
T 3jrp_A 10 HNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVLIWK 85 (379)
T ss_dssp CCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSCEEEEE
T ss_pred CcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---ccCCEEEEEE
Confidence 55678899998 799999999999999999998 566777775 46899999984 5677766 4479999999
Q ss_pred cCCCe--EEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCc--eEEeccccCCceEEEEEcC--------
Q 011970 257 IEDGT--VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------- 323 (474)
Q Consensus 257 i~tG~--~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~h~~~v~sv~Fsp-------- 323 (474)
+++|+ ++..+.+|...+..++|++.. +..+++++.|++|+|||+++++ ....+.+|...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 99998 788888899999999998432 6788889999999999999984 3445678999999999999
Q ss_pred -----CCcEEEEEc-CCcEEEEeCC-Cc----EEEEeccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCC
Q 011970 324 -----ENQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 324 -----dg~llaS~s-D~tIklWd~~-G~----ll~tl~gH~~~~~~~~v~svafSpD---g~~LaS~s~~~~~~~~~~s~ 389 (474)
++++|++++ |++|++||++ ++ ++.++.+|... |.+++|+|| +++|++++.
T Consensus 166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~l~s~~~----------- 229 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ----------- 229 (379)
T ss_dssp ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------
T ss_pred ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-----EeEEEECCCCCCCCeEEEEeC-----------
Confidence 799999999 9999999984 43 67899999887 799999999 999999987
Q ss_pred CCeEEEEeCCCCe---EEEEecC--CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 390 AGSINVSSILTGK---CLAKINA--TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 390 DgtIklWdi~tG~---cl~tl~g--H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
||+|+|||+.+++ ....+.. |.. .|++++|+|||+.||+|+
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPD----------------------------------VLWRASWSLSGNVLALSG 275 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSS----------------------------------CEEEEEECSSSCCEEEEE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCC----------------------------------cEEEEEEcCCCCEEEEec
Confidence 9999999998874 2222222 442 899999999999999999
Q ss_pred CCCcEEEccC
Q 011970 465 RHGLVHVWSN 474 (474)
Q Consensus 465 ~DgtVklWd~ 474 (474)
.||+|++|+.
T Consensus 276 ~dg~i~iw~~ 285 (379)
T 3jrp_A 276 GDNKVTLWKE 285 (379)
T ss_dssp SSSSEEEEEE
T ss_pred CCCcEEEEeC
Confidence 9999999973
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=304.86 Aligned_cols=283 Identities=8% Similarity=0.104 Sum_probs=222.0
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccccc-----------eeeEeecCCC------------ceEEEEEEee
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----------RICFLNVSPD------------EVIRSLFYNK 139 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~-----------~l~~l~g~~~------------~~i~sv~fsp 139 (474)
+.+...|..+.|+ +++||+++.||+|++|++.+++ ++..+.+ |. +.|.+|.|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcC
Confidence 4467889999999 8999999999999999999888 6889997 76 7899999999
Q ss_pred CC--CEEEEEEeecCCCccceeeeEEEEeEeccCCCCC---------------------cc---------------ceee
Q 011970 140 NN--DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS---------------------GF---------------ALFE 181 (474)
Q Consensus 140 dg--~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~---------------------~~---------------~lf~ 181 (474)
++ ..|++++ .| ++++||++..++... .+ ..+.
T Consensus 104 ~~~~~~l~s~s----~d------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 104 QKNAAQFLLST----ND------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCSSSEEEEEE----CS------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CCCcceEEEeC----CC------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 98 7899876 45 689999987644310 00 0122
Q ss_pred eccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEE---------cCCcEEEEEEcCC--ceEEEEecCCCC
Q 011970 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI---------SDKHVQEIKISPG--IMLLIFNRSSSH 249 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl---------~~~~V~~vafSpg--~~la~~s~~s~D 249 (474)
.+|...+.+++|+ |+|++|++| .|++|+|||+. +++++..+ +...|.+++|+|+ .+|+++ +.|
T Consensus 174 ~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~---~~d 248 (447)
T 3dw8_B 174 NAHTYHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS---SSK 248 (447)
T ss_dssp SCCSSCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE---ETT
T ss_pred cCCCcceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE---eCC
Confidence 2355667799998 799999999 79999999998 45566543 2457999999985 466665 458
Q ss_pred ccEEEEecCCCeE----EEEEeecCc------------ceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEecccc
Q 011970 250 VPLKILSIEDGTV----LKVFYHLLH------------RNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTE 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~----L~tl~~h~~------------~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h 312 (474)
++|+|||++++++ ++++.+|.. .+.+++|+ |++..|++++. ++|+|||+++ ++++.++.+|
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 9999999999998 899998876 89999998 56778887888 9999999998 9999888888
Q ss_pred CCc---------------eEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCc-------------------
Q 011970 313 FMT---------------PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH------------------- 356 (474)
Q Consensus 313 ~~~---------------v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~------------------- 356 (474)
... +..++|+|+|++|++++ |++|+|||++ |+++ ++++|....
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCccc
Confidence 642 22489999999999999 9999999996 7765 666664210
Q ss_pred ---------CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 357 ---------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 357 ---------~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
....|..++|+|+|++||+++. +.+.||+-
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~------------~~~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATT------------NNLYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECS------------SCEEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEec------------ceeeeecc
Confidence 0123678999999999999864 45888873
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=293.61 Aligned_cols=265 Identities=7% Similarity=0.049 Sum_probs=217.6
Q ss_pred ccccEEEEEee--c---cEEEEeeCCCeEEeeeccc-ccee-eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCcccee
Q 011970 87 KRTKVIEIVAA--R---DIVFALAHSGVCAAFSRET-NRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 87 ~~~~V~~i~~s--~---~~las~s~dgtiklW~~~t-g~~l-~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk 159 (474)
|...|..|.|+ + ++||+++.||+|++|++.+ ++.+ ..+.+ |...|.+++|+|+|+.|++++ .|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~----~d----- 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTAS----CD----- 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEE----TT-----
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEc----CC-----
Confidence 66777777777 2 7999999999999999998 7776 67776 889999999999999999976 45
Q ss_pred eeEEEEeEeccCCCCCccceeeeccccCceEEEE--eCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC
Q 011970 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP 236 (474)
Q Consensus 160 ~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~F--s~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp 236 (474)
++++||++.++++.. ++. +...+..++| + |+|++|++++.|++|++||+.+++++.++. ...+..+.+.+
T Consensus 108 -g~v~iwd~~~~~~~~---~~~--~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 108 -KTAKMWDLSSNQAIQ---IAQ--HDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp -SEEEEEETTTTEEEE---EEE--CSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred -CcEEEEEcCCCCcee---ecc--ccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 699999999888632 333 3456778999 7 799999999999999999999999888887 35788888886
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEE-e-ecCcceeEEEEEecCCCe----EEEEeCCCcEEEEECCCC---ceEE
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-Y-HLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNA---ELME 307 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~-~h~~~v~~V~F~~~~~~~----ll~~~~D~tIkIWDv~tg---~~~~ 307 (474)
... +++ ..++.+++|++.++...... . .+.+....+.+.. .... +++++.|++|+|||+.+. +++.
T Consensus 181 ~~~-~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMA-VVA---TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEE-EEE---EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred Cee-EEE---eCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 644 443 23689999999887554332 2 2345566666653 2322 888999999999999988 5667
Q ss_pred eccccCC------------ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 308 VSRTEFM------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 308 ~l~~h~~------------~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
.+.+|.. .|.+++|+|++++|++++ |++|+|||++ |+++.++.+|... |.+++|+|||++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l 330 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP-----ISACCFNHNGNIF 330 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC-----EEEEEECTTSSCE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC-----ceEEEECCCCCeE
Confidence 7777776 799999999999999999 9999999995 9999999999887 7999999999999
Q ss_pred EEEec
Q 011970 374 ISYCK 378 (474)
Q Consensus 374 aS~s~ 378 (474)
|+++.
T Consensus 331 ~~~s~ 335 (368)
T 3mmy_A 331 AYASS 335 (368)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=300.15 Aligned_cols=313 Identities=12% Similarity=0.088 Sum_probs=244.6
Q ss_pred EeeCCCeEEeeecc--cc--ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 103 ALAHSGVCAAFSRE--TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 103 s~s~dgtiklW~~~--tg--~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
+++.++.+++|.+. ++ +.+..+.. + ..+.+++|+|++..+++ ++.+ .++++||+.+|++....+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~-~~~~~~~~s~~~~~~~~----~~~~------~~i~~~d~~~g~~~~~~~ 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKT-G-FQPKSVRFIDNTRLAIP----LLED------EGMDVLDINSGQTVRLSP 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEEC-S-SCBCCCEESSSSEEEEE----BTTS------SSEEEEETTTCCEEEECC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcC-C-CCceEEEEeCCCeEEEE----eCCC------CeEEEEECCCCeEeeecC
Confidence 56677755666543 35 67777775 4 34669999996665555 3455 689999999998743211
Q ss_pred eee-eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEE
Q 011970 179 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 179 lf~-~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkL 254 (474)
.-. ..+...+..++|+ |+|+++++++.|++|++||+++++++.++. ...+..++|+|+ ..+++++ +.|++|++
T Consensus 162 ~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~ 238 (433)
T 3bws_A 162 PEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN--WISEDISV 238 (433)
T ss_dssp CHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEE
T ss_pred cccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEE
Confidence 101 1244566789996 799999999999999999999999998886 468999999984 4554553 45789999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe--------CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~--------~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
||+++|+++.++..+ ..+..++|+ |++..+++++ .|++|++||+.+++++... .|...+..++|+|+|+
T Consensus 239 ~d~~~~~~~~~~~~~-~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 239 IDRKTKLEIRKTDKI-GLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp EETTTTEEEEECCCC-SEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT
T ss_pred EECCCCcEEEEecCC-CCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC
Confidence 999999999999865 458899987 6777888876 4889999999999988775 4556889999999996
Q ss_pred -EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc----cccccCCCCeEEEEeCC
Q 011970 327 -LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE----DQWMEGSAGSINVSSIL 399 (474)
Q Consensus 327 -llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~----~~~~~s~DgtIklWdi~ 399 (474)
++++++ |++|++||++ |+++..+. |... +..++|+|||++|++++..... --.+++.||+|++||+.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK-----PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSS-----EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCC-----CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 556767 9999999995 88988886 4433 6899999999999988752110 01345568999999999
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC-CCcEEEccC
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWSN 474 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~-DgtVklWd~ 474 (474)
+|+++..+.++. .+.+++|+|||+.|++++. |++|++|+.
T Consensus 390 ~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 390 TDTVKEFWEAGN-----------------------------------QPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp TTEEEEEEECSS-----------------------------------SEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEecCCC-----------------------------------CCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 999999998765 7899999999999998775 999999973
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=312.02 Aligned_cols=227 Identities=14% Similarity=0.145 Sum_probs=170.5
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEE--E---E--cCCcEEEEEEcC---------CceEEEEecCCCCccEEEEe
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--S---I--SDKHVQEIKISP---------GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~--t---l--~~~~V~~vafSp---------g~~la~~s~~s~D~tIkLWd 256 (474)
+.++++++||+++.|++|||||++++++.. . + |.+.|++|+|+| |.+||++ +.|++|||||
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~---s~D~tv~~Wd 172 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV---GDDCTLIIWR 172 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE---ETTSEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE---ECCCeEEEEE
Confidence 335899999999999999999999998653 2 2 346899999997 4456655 5699999999
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-------------------------ccc
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------------------------SRT 311 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-------------------------l~~ 311 (474)
++++.++.++..|...+.+|+|+|.+..+|++++.|++|+|||++++++... ..+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 9999998888888899999999853334677789999999999999875432 246
Q ss_pred cCCceEEEEEc-CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-------------------
Q 011970 312 EFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD------------------- 369 (474)
Q Consensus 312 h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD------------------- 369 (474)
|...+..+.|+ |||+.+++++ |++|++||+. ++....+.+|... ++.+.++|+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEEEccccccccccCcceeEEEccCC
Confidence 77888999986 8999999999 9999999995 8888888888765 344545443
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCE
Q 011970 370 -QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 448 (474)
Q Consensus 370 -g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 448 (474)
+.++++|+. ||+|+|||+.+|+++.++.+|.. .|
T Consensus 328 ~~~~~~sgs~-----------Dg~V~lwd~~~~~~~~~~~~~~~----------------------------------~V 362 (393)
T 4gq1_A 328 MDYFATAHSQ-----------HGLIQLINTYEKDSNSIPIQLGM----------------------------------PI 362 (393)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTCTTCCEEEEECSS----------------------------------CE
T ss_pred CCEEEEEECC-----------CCEEEEEECCCCcEEEEecCCCC----------------------------------cE
Confidence 345666654 99999999999999999999885 89
Q ss_pred EEEEEcCCCCEEEEEcCCCc--EEEc
Q 011970 449 TSLFYDEERNEIYTGNRHGL--VHVW 472 (474)
Q Consensus 449 ~slafSpDg~~LaSgs~Dgt--VklW 472 (474)
++|+|||||++||+|+.||. |+||
T Consensus 363 ~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999999999999999886 4444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=333.03 Aligned_cols=255 Identities=10% Similarity=0.044 Sum_probs=204.2
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ 208 (474)
..+|.+|+|||||++|||+| .| .+++ +...++.. . +|.+.++.|+|+ |+| .|+
T Consensus 15 ~~~v~sv~~SpDG~~iASas----~D------~TV~--d~~~~~~l------~-gh~~~v~~V~Fs-Pdg-------~~~ 67 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTF----PD------ISIG--QPKYAKDI------N-CNSKNLFHVKEF-PLE-------FEN 67 (588)
T ss_dssp SSSSCCEEECTTSCEEEECS----SS------EEEE--EECCCSCC------S-SBGGGTEEEEEE-CCC-------CCC
T ss_pred hccEEEEEECCCCCEEEEEc----CC------ceee--ccccccee------c-CCCccEEEEEEC-CCC-------Ccc
Confidence 46799999999999999954 77 7777 55555542 2 356778899999 799 577
Q ss_pred cEEEeecCCCeEEEEE-cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCc-----ceeEEEEEec
Q 011970 209 IYKVFDLKNYTMLYSI-SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-----RNKKVDFIEQ 281 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl-~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~-----~v~~V~F~~~ 281 (474)
++++|+.+.. .+.++ +...|.+|+||| |.+||++ +.|++|+|||.++ ++.++. |.. .+.+|+|+ |
T Consensus 68 ~~~~~~~~~~-~~~~~~~~~~V~~vawSPdG~~LAs~---s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS-P 139 (588)
T 2j04_A 68 KLDFELAQQN-GLLNSQPVCYPRVCKPSPIDDWMAVL---SNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN-P 139 (588)
T ss_dssp TTTTSCCCSS-CSSTTSCSCCEEEEEECSSSSCEEEE---ETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC-S
T ss_pred eEEEEeCCCc-eEeecCCCCcEEEEEECCCCCEEEEE---eCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc-C
Confidence 7777765422 23332 257899999998 5567766 4589999999644 888888 544 49999998 7
Q ss_pred CCCeEEEEeCCCcEEEEECCCCce-------EEec----cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-Cc---EE
Q 011970 282 FNEKLLVKQENENLQILDVRNAEL-------MEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE---LV 346 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~-------~~~l----~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~---ll 346 (474)
+|..|+++++|++|+|||+.++++ ++++ .+|..+|.+++||||| ++++++|++|++||+. ++ .+
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCE
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccce
Confidence 899999999999999999999864 5665 7788999999999999 5444449999999996 45 34
Q ss_pred EEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 347 TSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 347 ~tl-~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
++| .+|... |++|+|+ |++|||++ |++|+|||+.+++......||+.
T Consensus 219 ~tL~~~h~~~-----V~svaFs--g~~LASa~------------~~tIkLWd~~~~~~~~~~~gh~~------------- 266 (588)
T 2j04_A 219 RMIQNASRRK-----ITDLKIV--DYKVVLTC------------PGYVHKIDLKNYSISSLKTGSLE------------- 266 (588)
T ss_dssp EEEECCCSSC-----CCCEEEE--TTEEEEEC------------SSEEEEEETTTTEEEEEECSCCS-------------
T ss_pred eeecccccCc-----EEEEEEE--CCEEEEEe------------CCeEEEEECCCCeEEEEEcCCCc-------------
Confidence 678 478765 7899999 69999985 79999999988887544448986
Q ss_pred CccccccccccccccccccccCEEEEEE--cCCCCEEEEEcCCCcEEEcc
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFY--DEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slaf--SpDg~~LaSgs~DgtVklWd 473 (474)
.|++++| ||||+.|+++++||+ |||.
T Consensus 267 ---------------------~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 267 ---------------------NFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp ---------------------CCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred ---------------------eEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 8999999 999999999999999 9996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=305.62 Aligned_cols=282 Identities=11% Similarity=0.142 Sum_probs=225.1
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC---CCCcccee--------------------ee----
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PDSGFALF--------------------ES---- 182 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~---~~~~~~lf--------------------~~---- 182 (474)
.++.+|+|||||++|++++ + ..+.+|++.+|+ .....+.- ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~----~-------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII----K-------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN 73 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE----T-------TEEEEEEEETTTEEEEEEEEECCC-------------------------
T ss_pred ccEEEEEecCCCCEEEEEe----C-------CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccc
Confidence 3578999999999776543 3 479999999998 32211100 00
Q ss_pred --------------------------ccccCceEEEEeCCCCeEE-EEecCCCcEEEeecC--CCeEEEEEc----CCcE
Q 011970 183 --------------------------ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKHV 229 (474)
Q Consensus 183 --------------------------~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~--tg~~l~tl~----~~~V 229 (474)
.+...|.+++|+ |||++| |+++.|++|+|||+. +++++..+. ...|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp --------------------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred cccccCcCccccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 011257789998 799996 999999999999999 899888774 4689
Q ss_pred EEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEE----EEeecCcceeEEEEEecC---CCeEEEEeCCCcEEEEECC
Q 011970 230 QEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVR 301 (474)
Q Consensus 230 ~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~----tl~~h~~~v~~V~F~~~~---~~~ll~~~~D~tIkIWDv~ 301 (474)
.+++|+|+ .+|+++ +.|+.|++|++.+++... ++.+|...+.+|+|++ + +..|++++.|++|+|||+.
T Consensus 153 ~~~~~sp~~~~l~~~---~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 153 NAISIAEDDTTVIIA---DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EEEEECTTSSEEEEE---ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred eEEEEcCCCCEEEEE---eCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence 99999985 556655 347899999999988655 8889999999999984 5 5577778999999999999
Q ss_pred CCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCC--------------------cCC
Q 011970 302 NAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW--------------------HPD 358 (474)
Q Consensus 302 tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~--------------------~~~ 358 (474)
+++++.. +.+|...|.+++|+ ||++|++++ |++|+|||+. |+++.++..|... ...
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 9999877 77999999999999 999999999 9999999995 9999998754200 011
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCC---eEEEEecCCCCCCCCccccCCCCCCccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNK 433 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi--~tG---~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
..|..|+|+|||++|++++. .|++|+|||+ .++ +++.++.+|.
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~----------~d~~i~iw~~~~~~~~~l~~~~~~~~~~---------------------- 355 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVE----------ATKCIIILEMSEKQKGDLALKQIITFPY---------------------- 355 (450)
T ss_dssp CCEEEEEECSSSSEEEEEET----------TCSEEEEEEECSSSTTCEEEEEEEECSS----------------------
T ss_pred EEEEEEEEeCCCCEEEEEEC----------CCCeEEEEEeccCCCCceeeccEeccCC----------------------
Confidence 23789999999999999872 2999999999 777 8899999984
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEEcC------CCcEEEcc
Q 011970 434 SSYIRSTVGEALEDITSLFYDEERNEIYTGNR------HGLVHVWS 473 (474)
Q Consensus 434 ~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~------DgtVklWd 473 (474)
.|++++|+|++..++.++. +..|+||.
T Consensus 356 -------------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 356 -------------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp -------------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred -------------ceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 7999999997655555554 55688885
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=301.02 Aligned_cols=270 Identities=10% Similarity=0.123 Sum_probs=216.2
Q ss_pred EEEEeeCCCeEEeeecccc----ceeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 100 IVFALAHSGVCAAFSRETN----RRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg----~~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
++++++.||+|++|++.+. +.+..+.+ |...|.+++|+| +++.|++++ .| .+++||++..++..
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s----~d------g~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASGS----ED------CTVMVWEIPDGGLV 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEEE----TT------SEEEEEECCTTCCS
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEEe----CC------CeEEEEEccCCCCc
Confidence 4446799999999998654 34556776 789999999999 999999976 55 69999999988542
Q ss_pred Cc----cceeeeccccCceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEEEE----cCCcEEEEEEcC-CceEEEEe
Q 011970 175 SG----FALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSI----SDKHVQEIKISP-GIMLLIFN 244 (474)
Q Consensus 175 ~~----~~lf~~~~~~~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~tl----~~~~V~~vafSp-g~~la~~s 244 (474)
.. ...+. +|...+..|+|+ |+| .+|++++.|++|+|||+.+++++.++ +...|.+++|+| +..|+++
T Consensus 118 ~~~~~~~~~~~-~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 194 (402)
T 2aq5_A 118 LPLREPVITLE-GHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS- 194 (402)
T ss_dssp SCBCSCSEEEE-CCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE-
T ss_pred cccCCceEEec-CCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE-
Confidence 11 11222 245677899998 687 69999999999999999999999999 356899999998 5566665
Q ss_pred cCCCCccEEEEecCCCeEEEEE-eecCcc-eeEEEEEecCCCeEEEE---eCCCcEEEEECCCCce-EEe-ccccCCceE
Q 011970 245 RSSSHVPLKILSIEDGTVLKVF-YHLLHR-NKKVDFIEQFNEKLLVK---QENENLQILDVRNAEL-MEV-SRTEFMTPS 317 (474)
Q Consensus 245 ~~s~D~tIkLWdi~tG~~L~tl-~~h~~~-v~~V~F~~~~~~~ll~~---~~D~tIkIWDv~tg~~-~~~-l~~h~~~v~ 317 (474)
+.|++|+|||+++|+++.++ .+|... +..+.|+ +++..++++ +.|++|+|||+++++. +.. ...|...+.
T Consensus 195 --~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 195 --CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp --ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred --ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 45899999999999999999 677665 8999998 555555556 5899999999999765 333 235677899
Q ss_pred EEEEcCCCcEEE-EEc-CCcEEEEeCC-Cc-EEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 318 AFIFLYENQLFL-TFR-NRTVAVWNFR-GE-LVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 318 sv~Fspdg~lla-S~s-D~tIklWd~~-G~-ll~tl~gH~--~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
+++|+|++++|+ +++ |++|++||++ ++ ++..+..|. .. |.+++|+|||.+++++ |+
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~-----v~~~~~sp~~~~~~s~-------------~~ 333 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES-----QRGMGYMPKRGLEVNK-------------CE 333 (402)
T ss_dssp EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC-----CSEEEECCGGGSCGGG-------------TE
T ss_pred EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc-----ccceEEecccccceec-------------ce
Confidence 999999999886 666 9999999995 66 366666654 43 7899999999998864 77
Q ss_pred eEEEEeCCCCeEE
Q 011970 392 SINVSSILTGKCL 404 (474)
Q Consensus 392 tIklWdi~tG~cl 404 (474)
.+++|++.++++.
T Consensus 334 ~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 334 IARFYKLHERKCE 346 (402)
T ss_dssp EEEEEEEETTEEE
T ss_pred eEEEEEcCCCcEE
Confidence 9999999998774
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=303.27 Aligned_cols=277 Identities=15% Similarity=0.157 Sum_probs=220.9
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCC-CCeEEEEecCCCcE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIY 210 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS~s~D~ti 210 (474)
..+++||+...++.. ++.| ..++||++.. |+.......+. +|...+..++|+ | ++++||+|+.|++|
T Consensus 38 ~~~~~~~~~~~~~~~---~~~~------g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~-p~~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 38 GFCAVNPKFMALICE---ASGG------GAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWC-PHNDNVIASGSEDCTV 106 (402)
T ss_dssp CSEEECSSEEEEEBC---CSSS------CCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEEC-TTCTTEEEEEETTSEE
T ss_pred CcEEECCCeEEEEEE---EcCC------CEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeC-CCCCCEEEEEeCCCeE
Confidence 347788877655431 3455 6899999844 44322223333 245677899998 6 99999999999999
Q ss_pred EEeecCCC-------eEEEEEc--CCcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCeEEEEE--eecCcceeEEE
Q 011970 211 KVFDLKNY-------TMLYSIS--DKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLHRNKKVD 277 (474)
Q Consensus 211 KlWdl~tg-------~~l~tl~--~~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~~L~tl--~~h~~~v~~V~ 277 (474)
+|||+.++ +++.++. ...|.+|+|+|++ .|+++ +.|++|+|||+++|+++.++ .+|...+.+++
T Consensus 107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA---GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE---ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE---cCCCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence 99999988 5566664 5689999999864 56665 45899999999999999999 78999999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEec-cccCCc-eEEEEEcCCCcEEEEE---c-CCcEEEEeCC-CcE-EEEe
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT-PSAFIFLYENQLFLTF---R-NRTVAVWNFR-GEL-VTSF 349 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h~~~-v~sv~Fspdg~llaS~---s-D~tIklWd~~-G~l-l~tl 349 (474)
|+ |++..|++++.|++|+|||+++++++..+ .+|... +..++|+|+|++|+++ + |++|++||++ ++. +..+
T Consensus 184 ~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 184 WS-RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp EC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred EC-CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 98 57888999999999999999999999887 788776 8999999999999999 6 9999999995 553 3333
Q ss_pred c-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccccCCCCCCc
Q 011970 350 E-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 350 ~-gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
. +|... +..++|+|||++|+.++ +.|++|++||+.+++. +..+.+|.. .
T Consensus 263 ~~~~~~~-----v~~~~~s~~~~~l~~~g----------~~dg~i~i~d~~~~~~~~~~l~~~~~-~------------- 313 (402)
T 2aq5_A 263 ELDTSSG-----VLLPFFDPDTNIVYLCG----------KGDSSIRYFEITSEAPFLHYLSMFSS-K------------- 313 (402)
T ss_dssp ECCCCSS-----CEEEEEETTTTEEEEEE----------TTCSCEEEEEECSSTTCEEEEEEECC-S-------------
T ss_pred eccCCCc-----eeEEEEcCCCCEEEEEE----------cCCCeEEEEEecCCCcceEeeccccc-C-------------
Confidence 3 44444 68999999999997543 2399999999999984 777777652 0
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|++++|+|||..+++ .|+.+++|+
T Consensus 314 ------------------~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 314 ------------------ESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp ------------------SCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred ------------------CcccceEEeccccccee--cceeEEEEE
Confidence 17999999999998875 567999997
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=287.34 Aligned_cols=273 Identities=8% Similarity=0.040 Sum_probs=225.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc---eeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceee
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKC 160 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~---~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~ 160 (474)
|...|.++.|+ +++||+++.||+|++|++.+++ .+..+.+ |...|.+++|+|+|+ .|++++ .|
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~----~d------ 78 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGT----VQ------ 78 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEE----TT------
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEc----CC------
Confidence 66778888887 8999999999999999999888 3445554 778999999999999 999976 44
Q ss_pred eEEEEeEe-ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC---------CeEEEEEc-CCcE
Q 011970 161 RSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKHV 229 (474)
Q Consensus 161 ~~~~iw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t---------g~~l~tl~-~~~V 229 (474)
..+++|++ ..++.. .+....+...+..++|+ | +++|++++.|++|++||+.+ ++++.++. ...|
T Consensus 79 g~i~~wd~~~~~~~~---~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 153 (342)
T 1yfq_A 79 GEILKVDLIGSPSFQ---ALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp SCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred CeEEEEEeccCCceE---eccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCce
Confidence 58999999 887751 12220034567789998 5 88999999999999999988 77666664 5689
Q ss_pred EEEEEcCCceEEEEecCCCCccEEEEecCC-CeE--EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---
Q 011970 230 QEIKISPGIMLLIFNRSSSHVPLKILSIED-GTV--LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--- 303 (474)
Q Consensus 230 ~~vafSpg~~la~~s~~s~D~tIkLWdi~t-G~~--L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg--- 303 (474)
.+++|+|+. ++++ +.|++|++||+++ ++. ......|...+.+++|++.++..+++++.|++|+|||+..+
T Consensus 154 ~~~~~~~~~-l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 154 FTMDTNSSR-LIVG---MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EEEEECSSE-EEEE---ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred EEEEecCCc-EEEE---eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence 999999987 6665 3478999999998 654 33344677889999998317889999999999999999987
Q ss_pred ---ceEEeccccCC---------ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccC-CCCcCCCCeeEEEECC
Q 011970 304 ---ELMEVSRTEFM---------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH-LLWHPDCNTNNIYITS 368 (474)
Q Consensus 304 ---~~~~~l~~h~~---------~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH-~~~~~~~~v~svafSp 368 (474)
+++..+.+|.. .|.+++|+|++++|++++ |++|++||++ |+++.++.+| ... |.+++ |
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~--~ 302 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-----VVKIA--C 302 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSE-----EEEEE--E
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCC-----ceEec--C
Confidence 77888888765 999999999999999999 9999999995 9999999998 876 68888 9
Q ss_pred CCCEEEEEecCCCccccccCCCCe-EEEEe
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGS-INVSS 397 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~Dgt-IklWd 397 (474)
||++||+++. ||+ .+.+.
T Consensus 303 ~~~~l~s~s~-----------Dg~~~~~~~ 321 (342)
T 1yfq_A 303 SDNILCLATS-----------DDTFKTNAA 321 (342)
T ss_dssp CSSEEEEEEE-----------CTHHHHCSS
T ss_pred CCCeEEEEec-----------CCccccccc
Confidence 9999999987 888 55544
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=309.38 Aligned_cols=319 Identities=9% Similarity=0.064 Sum_probs=248.9
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe--ccCCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i--~~G~~~~ 175 (474)
+.++++++.|++|++||..+|+++.++..++. +++++|||||++|++++ .| .++.+||+ .++++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~----~d------~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC----CC------CeEEEEECcCCCCcEEE
Confidence 88999999999999999999999999995453 89999999999999876 33 48999999 7777644
Q ss_pred ccceeeeccccCceEEEEeCC----CCeEEEEec-CCCcEEEeecCCCeEEEEEcC-------------CcEEEEEEcC-
Q 011970 176 GFALFESESLKWPGFVEFDDV----NGKVLTYSA-QDSIYKVFDLKNYTMLYSISD-------------KHVQEIKISP- 236 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~----nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~~-------------~~V~~vafSp- 236 (474)
.++ . -..|..|+|| | ||++|++++ .|++|+|||..+++++.++.. ..|.+|+|||
T Consensus 217 ~i~---~--g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 217 EIK---I--GIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp EEE---C--CSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEe---c--CCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 322 2 2457799998 8 999998888 489999999999999998853 2689999998
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccc--
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT-- 311 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~-- 311 (474)
+..++++. ..+++|.+||+.++++++ ++. +......+.|+ |++.+++++ ..|++|++||+.+++++.++..
T Consensus 291 ~~~~~vs~--~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 291 HPEFIVNV--KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSEEEEEE--TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEE--CCCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 55555543 557899999999987766 443 45667889997 678878776 4789999999999999987654
Q ss_pred --cCCceEEEEEcCC-CcEEEEEc--CCcEEEEeC-C-------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 312 --EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 312 --h~~~v~sv~Fspd-g~llaS~s--D~tIklWd~-~-------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
|......+ ++|+ |++++|++ |++|+|||. . +++++++++|..+ +..|+|+|||++|.+++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCCEEEECCT
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCCcEEEecC
Confidence 65545454 4665 88899985 899999998 4 7899999999876 468999999999999762
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEE-EEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 379 AEPEDQWMEGSAGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 379 ~~~~~~~~~s~DgtIklWdi~tG~cl-~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
-.++.. .+++|.+||+.|++++ .+|.-- -++.++++-+.|..++|+|||
T Consensus 441 ~~~~~~----~~~~v~v~d~~~~~~~~~~~~v~--------------------------~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 441 FNPDAR----ISQSVAVFDLKNLDAKYQVLPIA--------------------------EWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp TCSSHH----HHTCEEEEETTCTTSCCEEECHH--------------------------HHHCCCSSCCEEEEEEECSSS
T ss_pred CCCCcc----cCceEEEEECCCCCCCeEEeech--------------------------hhcccCCCCCceEeccCCCCC
Confidence 111100 1689999999999988 555110 001111112389999999999
Q ss_pred CEEEEE-----cCCCcEEEccC
Q 011970 458 NEIYTG-----NRHGLVHVWSN 474 (474)
Q Consensus 458 ~~LaSg-----s~DgtVklWd~ 474 (474)
++|+.+ +.|++|.|||.
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEET
T ss_pred CEEEEEeecCCCCCCeEEEEEC
Confidence 999966 35899999983
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=286.40 Aligned_cols=253 Identities=11% Similarity=0.068 Sum_probs=202.3
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--cCCCCCccceeeeccccCceEEEEeC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDD 195 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G~~~~~~~lf~~~~~~~~~~V~Fs~ 195 (474)
|+++.++++ |.+.|.+++|+|+|+.||+++ .| .+++||++. ++++.. .+. .|...+.+++|+
T Consensus 1 G~~~~~~~~-h~~~v~~~~~s~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~---~~~-~h~~~v~~~~~~- 64 (379)
T 3jrp_A 1 GSMVVIANA-HNELIHDAVLDYYGKRLATCS----SD------KTIKIFEVEGETHKLID---TLT-GHEGPVWRVDWA- 64 (379)
T ss_dssp ----CCEEE-CCCCEEEEEECSSSSEEEEEE----TT------SCEEEEEEETTEEEEEE---EEC-CCSSCEEEEEEC-
T ss_pred CCccEEecC-CcccEEEEEEcCCCCEEEEEE----CC------CcEEEEecCCCcceeee---Eec-CCCCcEEEEEeC-
Confidence 567788997 889999999999999999976 45 689999987 333321 122 245667799998
Q ss_pred CC--CeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC---ceEEEEecCCCCccEEEEecCCCe--EEE
Q 011970 196 VN--GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGT--VLK 264 (474)
Q Consensus 196 ~n--Gk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg---~~la~~s~~s~D~tIkLWdi~tG~--~L~ 264 (474)
++ |++|++++.|++|+|||+.+++ ++..+. ...|.+++|+|+ ..++++ +.|++|++||+.+++ ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe---cCCCcEEEEecCCCCceeeE
Confidence 45 9999999999999999999997 666664 468999999985 456655 458999999999984 445
Q ss_pred EEeecCcceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCCc----eEEeccccCCceEEEEEcCC---C
Q 011970 265 VFYHLLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYE---N 325 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~------------~~~~ll~~~~D~tIkIWDv~tg~----~~~~l~~h~~~v~sv~Fspd---g 325 (474)
.+.+|...+..++|++. ++..+++++.|++|+|||+++++ ++..+.+|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 67788899999999853 57888889999999999998875 55678899999999999999 9
Q ss_pred cEEEEEc-CCcEEEEeCC-Cc---EEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 326 QLFLTFR-NRTVAVWNFR-GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 326 ~llaS~s-D~tIklWd~~-G~---ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
++|++++ |++|+|||++ ++ ....+. +|... |.+++|+|||++|++++. ||+|+|||+
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~~-----------dg~i~iw~~ 285 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKE 285 (379)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEES-----------SSSEEEEEE
T ss_pred CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEeC
Confidence 9999999 9999999995 53 333333 35554 799999999999999886 999999999
Q ss_pred CCCeEEE
Q 011970 399 LTGKCLA 405 (474)
Q Consensus 399 ~tG~cl~ 405 (474)
.++....
T Consensus 286 ~~~~~~~ 292 (379)
T 3jrp_A 286 NLEGKWE 292 (379)
T ss_dssp EETTEEE
T ss_pred CCCCccc
Confidence 8654433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=292.64 Aligned_cols=227 Identities=10% Similarity=0.114 Sum_probs=186.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
|-..+.+|+|+ |||++||+|+.|+ ++|||+.+++++.......+..+++++ +..+++.+ +.|++|+|||+++|++
T Consensus 18 h~~~V~~v~fs-~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 18 VSNPVTDYEFN-QDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVT--GVKEVVHIWDDVKKQD 93 (355)
T ss_dssp -CCCCCEEEEC-TTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEEC--SSTTEEEEEETTTTEE
T ss_pred CCCceEEEEEC-CCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEE--CCccEEEEEECCCCcE
Confidence 34556799998 7999999998775 899999999988777655677888885 55555542 5578999999999999
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEEE--Ec-CCcEEE
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLT--FR-NRTVAV 338 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~llaS--~s-D~tIkl 338 (474)
+.++.+ ...+..+.|++ +.++++ .|++|+|||+.++ +++..+.+ ....++|+| ++++. ++ |++|+|
T Consensus 94 ~~~~~~-~~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 94 VSRIKV-DAPVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EEEEEC-SSCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred EEEEEC-CCceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence 999984 46899999863 444444 5889999999998 77766554 344566788 55555 46 999999
Q ss_pred EeCC-Cc----------------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCC
Q 011970 339 WNFR-GE----------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILT 400 (474)
Q Consensus 339 Wd~~-G~----------------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt-IklWdi~t 400 (474)
||++ ++ ++.++.+|... |++++|+|||++|||++. |++ |+|||+.+
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~-----v~~~~~s~~g~~l~s~s~-----------d~~~v~iwd~~~ 227 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP-----IKMVRLNRKSDMVATCSQ-----------DGTIIRVFKTED 227 (355)
T ss_dssp EECCC------------------CCEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCSEEEEEETTT
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCc-----eEEEEECCCCCEEEEEeC-----------CCCEEEEEECCC
Confidence 9996 55 37899999987 799999999999999987 999 99999999
Q ss_pred CeEEEEec-C-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 401 GKCLAKIN-A-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 401 G~cl~tl~-g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+++.++. | |.. .|++|+|+|||+.||||+.|++|+|||.
T Consensus 228 ~~~~~~~~~g~h~~----------------------------------~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 228 GVLVREFRRGLDRA----------------------------------DVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CCEEEEEECTTCCS----------------------------------CEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CcEEEEEEcCCCCC----------------------------------cEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 99999998 6 875 8999999999999999999999999984
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=296.81 Aligned_cols=225 Identities=8% Similarity=0.072 Sum_probs=191.0
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEec---------CCCeEEEEE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI---------EDGTVLKVF 266 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi---------~tG~~L~tl 266 (474)
+|+++|++|+.|++|+|||+++++++.++....|..++|+|. ++++ +.|++|++|+. +++++++.+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~~s~---s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--IISR---GPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--EEEE---CSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--eEEe---cCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 478999999999999999999999999888777889999998 6655 56899999954 477778777
Q ss_pred e-ecCcceeEEEEEec-CCCeEEEEeCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 267 Y-HLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 267 ~-~h~~~v~~V~F~~~-~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
. +|...+..++|++. ++..+++++.|++|+|||+++++++.+.. .|...+.+++|+|||++|++++ |++|+|||++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 7 67778999999731 67888889999999999999999987764 4556899999999999999998 9999999995
Q ss_pred -CcEE-EEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 343 -GELV-TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 343 -G~ll-~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
++++ .+|++ |... |.+++|+|||++|++++ |++|+|||+.+++++.++..+... .
T Consensus 201 ~~~~~~~~~~~~h~~~-----v~~l~fs~~g~~l~s~~------------~~~v~iwd~~~~~~~~~~~~~~~~-~---- 258 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAK-----IKEVKFADNGYWMVVEC------------DQTVVCFDLRKDVGTLAYPTYTIP-E---- 258 (343)
T ss_dssp CTTSCCEECCCCTTSC-----EEEEEECTTSSEEEEEE------------SSBEEEEETTSSTTCBSSCCCBC-------
T ss_pred CCCCCccEEeccCCCC-----EEEEEEeCCCCEEEEEe------------CCeEEEEEcCCCCcceeecccccc-c----
Confidence 8887 89998 9886 79999999999999987 449999999999988777764320 0
Q ss_pred cCCCCCCccccccccccccccccccccCE--EEEEEcCCCCEEEEEcC-CCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDI--TSLFYDEERNEIYTGNR-HGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V--~slafSpDg~~LaSgs~-DgtVklWd 473 (474)
..+ .+++|+|+|++|++|+. |+.|+||+
T Consensus 259 --------------------------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 259 --------------------------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp -----------------------------CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------------------------ccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 022 46999999999999998 99999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=278.96 Aligned_cols=254 Identities=9% Similarity=0.099 Sum_probs=211.3
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG- 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg- 237 (474)
.++++|++.+|++.. .+.. -..+..++|+ |||+.| ++++.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 12 ~~v~v~d~~~~~~~~---~~~~--~~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg 85 (391)
T 1l0q_A 12 DNISVIDVTSNKVTA---TIPV--GSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (391)
T ss_dssp TEEEEEETTTTEEEE---EEEC--SSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEE---Eeec--CCCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC
Confidence 699999999998743 2222 1346789998 799876 788899999999999999998886 468999999984
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEE-EEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll-~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..|++++ +.|++|++||+++|+++..+.+| ..+..++|+ |++..++ +++.|++|++||+.+++++..+..|. .+
T Consensus 86 ~~l~~~~--~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 160 (391)
T 1l0q_A 86 KQVYVTN--MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SP 160 (391)
T ss_dssp SEEEEEE--TTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SE
T ss_pred CEEEEEE--CCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-Cc
Confidence 4455553 45789999999999999999865 467899997 6677774 56789999999999999998877664 67
Q ss_pred EEEEEcCCCcEE-EEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 317 SAFIFLYENQLF-LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 317 ~sv~Fspdg~ll-aS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
..++|+|+|+.+ ++++ |++|++||++ ++++..+..+. . +..++|+|||++|++++. ...|++|
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~g~~l~~~~~--------~~~~~~v 226 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A-----PSGIAVNPEGTKAYVTNV--------DKYFNTV 226 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E-----EEEEEECTTSSEEEEEEE--------CSSCCEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C-----ccceEECCCCCEEEEEec--------CcCCCcE
Confidence 999999999877 6777 9999999995 88888887543 2 689999999999998873 1138999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEEcCCCcEEEc
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVW 472 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L-aSgs~DgtVklW 472 (474)
++||+.+++++.++..|. .+.+++|+|||+.| ++++.|++|++|
T Consensus 227 ~~~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEECCCCeEEEEEecCC-----------------------------------CccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 999999999999998876 67899999999987 788999999999
Q ss_pred cC
Q 011970 473 SN 474 (474)
Q Consensus 473 d~ 474 (474)
|.
T Consensus 272 d~ 273 (391)
T 1l0q_A 272 DT 273 (391)
T ss_dssp ET
T ss_pred EC
Confidence 84
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=292.16 Aligned_cols=267 Identities=10% Similarity=0.046 Sum_probs=198.3
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+.+||+++.||+|++||+++|+++.++. ...|+++.|+|+ |+++| .| +++++|+...
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s----~D------~~i~~w~~~~------- 104 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRG----PC------NRLLLLYPGN------- 104 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEEC----ST------TEEEEEETTT-------
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEec----CC------CeEEEEEccC-------
Confidence 6788889999999999888888777776 233555555555 44432 33 3555554110
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC--CceEEEEecCCCCccE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP--GIMLLIFNRSSSHVPL 252 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp--g~~la~~s~~s~D~tI 252 (474)
.+.+||+++++++..+. ...|.+++|+| ++.+++++ +.|++|
T Consensus 105 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--s~dg~i 151 (343)
T 3lrv_A 105 -------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA--DNRGTI 151 (343)
T ss_dssp -------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEE--ETTCCE
T ss_pred -------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE--eCCCcE
Confidence 23445666777666554 35799999999 55544432 458999
Q ss_pred EEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE-Eeccc-cCCceEEEEEcCCCcEEE
Q 011970 253 KILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRT-EFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 253 kLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-~~l~~-h~~~v~sv~Fspdg~lla 329 (474)
+|||+++|+++..+. +|...+.+++|+ |++..+++++.|++|+|||+++++++ ..+.+ |...|.+++|+|+|++|+
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 999999999988875 445579999998 67778888899999999999999988 77887 999999999999999999
Q ss_pred EEcCCcEEEEeCC-CcEEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 330 TFRNRTVAVWNFR-GELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 330 S~sD~tIklWd~~-G~ll~tl~g---H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+++|++|+|||++ ++++.+++. |...+. -..++|+|+|++||+++. .|++|+||++.+++...
T Consensus 231 s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~s~----------~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 231 VECDQTVVCFDLRKDVGTLAYPTYTIPEFKTG---TVTYDIDDSGKNMIAYSN----------ESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp EEESSBEEEEETTSSTTCBSSCCCBC-----C---CEEEEECTTSSEEEEEET----------TTTEEEEEEECTTTCSE
T ss_pred EEeCCeEEEEEcCCCCcceeeccccccccccc---ceEEEECCCCCEEEEecC----------CCCcEEEEEEcccccce
Confidence 9996699999995 877665554 444321 135999999999999763 38999999986654322
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC---CCCEEEEEcCCCcEEEc
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE---ERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp---Dg~~LaSgs~DgtVklW 472 (474)
.. . .+..+.|+| +++.|++++.|++++++
T Consensus 298 ~~----~----------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 298 TK----D----------------------------------EESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EE----E----------------------------------EEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred Ee----c----------------------------------CceeEecCccccccceeEEEecCCceEEE
Confidence 22 1 677899999 99999999999999886
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=289.98 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=203.6
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC----------CeEEEEEc--CCcEEEEEEcCC-c-eEEEEecCCCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----------YTMLYSIS--DKHVQEIKISPG-I-MLLIFNRSSSH 249 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t----------g~~l~tl~--~~~V~~vafSpg-~-~la~~s~~s~D 249 (474)
|...|..++|+|.++.+||+++.|++|+|||+.+ ++++.++. ...|.+++|+|. . .|+++ +.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~---~~d 203 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA---SDD 203 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE---CTT
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE---eCC
Confidence 4566779999943488999999999999999986 56666664 567999999984 3 56665 558
Q ss_pred ccEEEEecCCCeE-------EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---ceEEeccccCCceEEE
Q 011970 250 VPLKILSIEDGTV-------LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAF 319 (474)
Q Consensus 250 ~tIkLWdi~tG~~-------L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg---~~~~~l~~h~~~v~sv 319 (474)
++|+|||+.++.. ...+.+|...+..|+|++.++..+++++.|++|+|||++++ +++..+..|...|.++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 9999999988432 46777898999999998545667777899999999999987 5777788999999999
Q ss_pred EEcCCCc-EEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEE
Q 011970 320 IFLYENQ-LFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 320 ~Fspdg~-llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+|+|+++ +|++++ |++|+|||++ ++++.++.+|... |.+++|+|+|+ +||+++. |++|+
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~-----v~~i~~sp~~~~~l~s~~~-----------d~~i~ 347 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE-----IFQVQWSPHNETILASSGT-----------DRRLH 347 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC-----EEEEEECSSCTTEEEEEET-----------TSCCE
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC-----EEEEEECCCCCCEEEEEeC-----------CCcEE
Confidence 9999997 788998 9999999995 6789999999887 79999999995 7888876 99999
Q ss_pred EEeCCC--------------CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-E
Q 011970 395 VSSILT--------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-E 459 (474)
Q Consensus 395 lWdi~t--------------G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~ 459 (474)
|||+.+ .+++..+.+|.. .|++++|+|+++ .
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------------------------~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA----------------------------------KISDFSWNPNEPWI 393 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS----------------------------------CEEEEEECSSSTTE
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCC----------------------------------CceEEEECCCCCCE
Confidence 999977 478888889885 899999999999 9
Q ss_pred EEEEcCCCcEEEccC
Q 011970 460 IYTGNRHGLVHVWSN 474 (474)
Q Consensus 460 LaSgs~DgtVklWd~ 474 (474)
|+|++.||+|+||+.
T Consensus 394 l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEECCCCEEEeEc
Confidence 999999999999973
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=291.77 Aligned_cols=238 Identities=8% Similarity=-0.006 Sum_probs=168.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee-eccccCceEEEEeC-------CCCeEEE
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDD-------VNGKVLT 202 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~-~~~~~~~~~V~Fs~-------~nGk~La 202 (474)
.+...++++++..|+++| .| ++++||++..+++.....+-. .+|..+|.+|+|+| .||++||
T Consensus 91 ~~~~~~~~~~~~~las~~----~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~la 160 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVC----QD------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIA 160 (393)
T ss_dssp ------CCEEEEEEEEEE----TT------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEE
T ss_pred CcceeecCCCCCEEEEEe----CC------CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEE
Confidence 344556667788888866 66 799999999887633212111 13677899999983 2899999
Q ss_pred EecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCeEEEEE------------
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVF------------ 266 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~~L~tl------------ 266 (474)
|+|.|+||||||+.++.++..+. ...|.+|+|+|++ +|+++ +.|++|+|||+++++...++
T Consensus 161 s~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~ 237 (393)
T 4gq1_A 161 SVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG---ERNGNIRIFDWTLNLSAEENSQTELVKNPWLL 237 (393)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCCC----------CSCCCSE
T ss_pred EEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec---CCCCEEEEEECCCCcccccccccCCcccceEE
Confidence 99999999999999888766553 5689999999843 45555 45899999999999876543
Q ss_pred -------------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC----------
Q 011970 267 -------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---------- 323 (474)
Q Consensus 267 -------------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp---------- 323 (474)
.+|...+..|.|.++++.++++++.|++++|||+.+++....+.+|...+..+.|+|
T Consensus 238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
T 4gq1_A 238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS 317 (393)
T ss_dssp EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC
T ss_pred ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc
Confidence 356677889999988999999999999999999999998887777777766665554
Q ss_pred ----------CCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 324 ----------ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 324 ----------dg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
++.++++++ |++|+|||++ |+++..+.+|..+ |++|+|||||++||+++ ++
T Consensus 318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-----V~svafspdG~~LA~as------------~~ 380 (393)
T 4gq1_A 318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-----IVDFCWHQDGSHLAIAT------------EG 380 (393)
T ss_dssp SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-----EEEEEECTTSSEEEEEE------------SS
T ss_pred ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-----EEEEEEcCCCCEEEEEe------------CC
Confidence 455778888 9999999995 9999999999876 79999999999999987 45
Q ss_pred eEEEEeC
Q 011970 392 SINVSSI 398 (474)
Q Consensus 392 tIklWdi 398 (474)
.|.||.+
T Consensus 381 Gv~lvrL 387 (393)
T 4gq1_A 381 SVLLTRL 387 (393)
T ss_dssp EEEEEEE
T ss_pred CeEEEEE
Confidence 5777764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=288.72 Aligned_cols=254 Identities=10% Similarity=0.084 Sum_probs=200.6
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEcC--C------------------------------------
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--K------------------------------------ 227 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~~--~------------------------------------ 227 (474)
..|+|+ +||++|+++ .++.|++||+.+|+ ++.++.. .
T Consensus 8 ~~v~~s-~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 8 QNLLTS-RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CEEEEC-SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEec-CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 479998 799977766 57899999999999 7666542 1
Q ss_pred ------------------cEEEEEEcCCc-eEEEEecCCCCccEEEEecC--CCeEEEEEe--ecCcceeEEEEEecCCC
Q 011970 228 ------------------HVQEIKISPGI-MLLIFNRSSSHVPLKILSIE--DGTVLKVFY--HLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 228 ------------------~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~--tG~~L~tl~--~h~~~v~~V~F~~~~~~ 284 (474)
.|.+++|||++ .|++++ +.|++|+|||+. +|++++++. .|...+..++|+ |++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~ 162 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA--DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDT 162 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEE--GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSS
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE--CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCC
Confidence 59999999855 443332 458999999999 999999998 456788999997 6788
Q ss_pred eEEEEeCCCcEEEEECCCCceEE----eccccCCceEEEEEcCC---CcEEEEEc-CCcEEEEeCC-CcEEEE-eccCCC
Q 011970 285 KLLVKQENENLQILDVRNAELME----VSRTEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLL 354 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~~----~l~~h~~~v~sv~Fspd---g~llaS~s-D~tIklWd~~-G~ll~t-l~gH~~ 354 (474)
.|++++.|+.|++||+.+++... .+.+|...|.+++|+|+ +++|++++ |++|+|||+. ++++.+ +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 89999999999999999988654 78899999999999999 99999999 9999999995 998887 669988
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
+ |++++|+ ||++|++++. |++|+|||+.+|+++.++..|.. +. ..+.. .+ ...
T Consensus 243 ~-----v~~~~~s-d~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~-~~-~~~~~--~~------~~~ 295 (450)
T 2vdu_B 243 F-----VSSICCG-KDYLLLSAGG-----------DDKIFAWDWKTGKNLSTFDYNSL-IK-PYLND--QH------LAP 295 (450)
T ss_dssp C-----EEEEEEC-STTEEEEEES-----------SSEEEEEETTTCCEEEEEECHHH-HG-GGCCT--TS------BC-
T ss_pred c-----eEEEEEC-CCCEEEEEeC-----------CCeEEEEECCCCcEeeeecchhh-hh-hhhhh--cc------ccc
Confidence 7 7999999 9999999987 99999999999999999976531 00 00000 00 000
Q ss_pred ccccccc-cccccCEEEEEEcCCCCEEEEEc-CCCcEEEccC
Q 011970 435 SYIRSTV-GEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~-~~~l~~V~slafSpDg~~LaSgs-~DgtVklWd~ 474 (474)
..+.... ...-..|.+++|+|||+.|++++ .|++|+||+.
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 0000000 01123799999999999999999 9999999973
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=310.45 Aligned_cols=237 Identities=14% Similarity=0.195 Sum_probs=202.7
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecC--CCeEEEEEc--CCcEEEEEEcC---CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKISP---GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~--tg~~l~tl~--~~~V~~vafSp---g~~la~~s~~s~D~tIkLWd 256 (474)
|...|.+++|+ |||++|++|+.|++|+|||+. +++++.++. ...|.+++|+| +..|+++ +.|++|++||
T Consensus 8 H~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~---s~Dg~I~vwd 83 (753)
T 3jro_A 8 HNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC---SYDGKVLIWK 83 (753)
T ss_dssp CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE---ETTSCEEEEE
T ss_pred CcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEE---eCCCeEEEEE
Confidence 55678899998 799999999999999999998 556777776 45899999995 5667766 4589999999
Q ss_pred cCCCe--EEEEEeecCcceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCc--eEEeccccCCceEEEEEcC--------
Q 011970 257 IEDGT--VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------- 323 (474)
Q Consensus 257 i~tG~--~L~tl~~h~~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~h~~~v~sv~Fsp-------- 323 (474)
+.+|+ ++..+.+|...+.+++|++.. +..+++++.|++|++||++++. ....+.+|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 99998 788888999999999998432 7788889999999999999884 3455678999999999999
Q ss_pred -----CCcEEEEEc-CCcEEEEeCC-C----cEEEEeccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCC
Q 011970 324 -----ENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 324 -----dg~llaS~s-D~tIklWd~~-G----~ll~tl~gH~~~~~~~~v~svafSpD---g~~LaS~s~~~~~~~~~~s~ 389 (474)
++++|++++ |++|++||++ + +++.++.+|... |.+++|+|+ |++|++++.
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~~~~l~s~s~----------- 227 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ----------- 227 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEES-----------
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-----EEEEEeccCCCCCCEEEEEec-----------
Confidence 699999999 9999999994 5 678899999987 799999999 999999987
Q ss_pred CCeEEEEeCCCCe-----EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 390 AGSINVSSILTGK-----CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 390 DgtIklWdi~tG~-----cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
||+|+|||+.+++ .+....+|.. .|++++|+|||+.|++|+
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPD----------------------------------VLWRASWSLSGNVLALSG 273 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSS----------------------------------CCCCEEECTTTCCEEEEC
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCC----------------------------------ceEEEEEcCCCCEEEEEc
Confidence 9999999998874 2222233432 799999999999999999
Q ss_pred CCCcEEEccC
Q 011970 465 RHGLVHVWSN 474 (474)
Q Consensus 465 ~DgtVklWd~ 474 (474)
.||+|++|+.
T Consensus 274 ~Dg~I~vwd~ 283 (753)
T 3jro_A 274 GDNKVTLWKE 283 (753)
T ss_dssp SSSCEECCBC
T ss_pred CCCEEEEEec
Confidence 9999999984
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=269.00 Aligned_cols=274 Identities=9% Similarity=0.078 Sum_probs=221.4
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeeccccceeeE-----eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-----LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~-----l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
+..+.++ +.++++++.|+++++||..+|+.+.. +.+ |...|++++|+|+|+.+++++ .| .++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~----~d------~~v 193 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVETISIPEHNELWVSQM----QA------NAV 193 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEEEEEGGGTEEEEEEG----GG------TEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeEEEEcCCCEEEEEEC----CC------CEE
Confidence 4455555 77888899999999999999999883 444 778899999999999888854 44 689
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCc-eE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI-ML 240 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSpg~-~l 240 (474)
++|++.++++... +. .+...+..++|+ |+|+.| ++++.|++|++||+.+++++.++.. ..+..++|+|++ .+
T Consensus 194 ~~~d~~~~~~~~~---~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 194 HVFDLKTLAYKAT---VD-LTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp EEEETTTCCEEEE---EE-CSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred EEEECCCceEEEE---Ec-CCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence 9999998886432 22 234567789998 688877 6666899999999999999988874 569999999854 66
Q ss_pred EEEecCC-----CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCC
Q 011970 241 LIFNRSS-----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFM 314 (474)
Q Consensus 241 a~~s~~s-----~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~ 314 (474)
++++... .|+.|++||+.+|+++..+.+ ...+..++|+ |++..++++ +.|++|++||+.+++++..+. +..
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 345 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD 345 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EECEEEEEEC-SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeeccC-CCCcceEEEC-CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence 6664322 478999999999999888753 3577889997 567677665 799999999999999988765 567
Q ss_pred ceEEEEEcCCCcEEEEEc-C---------------CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 315 TPSAFIFLYENQLFLTFR-N---------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D---------------~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.+.+++|+|||+++++++ + |+|.+||. +|+++..+.++.. +..++|+|||++|++++
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ------PTGLDVSPDNRYLVISD 419 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS------EEEEEECTTSCEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC------CceEEEcCCCCEEEEEE
Confidence 899999999999887775 3 59999999 4999999987543 68999999999999875
Q ss_pred cCCCccccccCCCCeEEEEeCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~ 399 (474)
. .|++|++|++.
T Consensus 420 ~----------~d~~i~v~~~~ 431 (433)
T 3bws_A 420 F----------LDHQIRVYRRD 431 (433)
T ss_dssp T----------TTTEEEEEEET
T ss_pred C----------CCCeEEEEEec
Confidence 3 39999999974
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=280.13 Aligned_cols=237 Identities=10% Similarity=0.073 Sum_probs=181.0
Q ss_pred ceeecccCCCCCcccccccc----------cccccEEEEEee------ccEEEEeeCCCeEEeeeccccceeeEeecCCC
Q 011970 66 VEEYDTHDPKGHCPFVLPFL----------MKRTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNVSPD 129 (474)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~----------~~~~~V~~i~~s------~~~las~s~dgtiklW~~~tg~~l~~l~g~~~ 129 (474)
......|..|+...++.|+- -+...|+.|+++ ++++++++++ +++|++.+|+.+++.-.+|+
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d 156 (356)
T 2w18_A 79 LYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSD 156 (356)
T ss_dssp EEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTT
T ss_pred eEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCC
Confidence 35556677777666666620 255679999999 4688988855 88899999999999433488
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC--CCeEEEEecCC
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~--nGk~LaS~s~D 207 (474)
..|+.++|+|||+.+++- .++.. .+..++|++. ||.+|||+|.|
T Consensus 157 ~~V~~~~~s~dG~~~~s~------------------------------~~~~~----~v~~l~fs~~~g~~~~LaSgS~D 202 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQ------------------------------FLMPP----EETILTFAEVQGMQEALLGTTIM 202 (356)
T ss_dssp CEEEEEEECTTSCEEEEE------------------------------EECCC----SSCEEEEEEEETSTTEEEEEETT
T ss_pred CcEEEEEECCCCceeeee------------------------------ccCCC----ceeeEEeeccCCCCceEEEecCC
Confidence 999999999999977641 12222 2336777732 77999999999
Q ss_pred CcEEEeecCCCeEEEEEcC-----CcEEEEEEcCCceEE-EE---------ecCCCCccEEEEecCCCeEEEEEe-----
Q 011970 208 SIYKVFDLKNYTMLYSISD-----KHVQEIKISPGIMLL-IF---------NRSSSHVPLKILSIEDGTVLKVFY----- 267 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~-----~~V~~vafSpg~~la-~~---------s~~s~D~tIkLWdi~tG~~L~tl~----- 267 (474)
+||||||+++|++++++++ ..|..++|||++.++ ++ .+++.|++||+||..+|+++.++.
T Consensus 203 ~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~ 282 (356)
T 2w18_A 203 NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP 282 (356)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence 9999999999999999974 246778999865544 32 235779999999999999998873
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE-EEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~-sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
+|.....+.++. +..+++++.|+||||||+++|++++++.+|...+. .++|||||++|+|++ |+||||||+
T Consensus 283 Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 283 GQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 555554444543 56677788999999999999999999999988766 589999999999999 999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=271.96 Aligned_cols=293 Identities=11% Similarity=0.093 Sum_probs=227.0
Q ss_pred cEEEEee----CCC----eEEeeec--ccccee--eEeecCCCceEEEEEEee--------------CCCEEEEEEeecC
Q 011970 99 DIVFALA----HSG----VCAAFSR--ETNRRI--CFLNVSPDEVIRSLFYNK--------------NNDSLITVSVYAS 152 (474)
Q Consensus 99 ~~las~s----~dg----tiklW~~--~tg~~l--~~l~g~~~~~i~sv~fsp--------------dg~~Lis~S~~~s 152 (474)
+.+++|+ .|| +++|||+ .+|+++ .++.+ |...++.+++++ ++..|+.++.+..
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~ 154 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG 154 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence 5566665 567 9999999 999998 55887 667789998886 3778888876533
Q ss_pred CCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC---cEEEeecCCCeEEEEE-cCCc
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSI-SDKH 228 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~---tiKlWdl~tg~~l~tl-~~~~ 228 (474)
++ ...++++||+..++. . .+..+ ...+.+++|| |||+.||+++.|+ +|++||+++|++.... +...
T Consensus 155 ~~----~~~~i~i~d~~g~~~-~--~l~~~--~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 155 GQ----FPYELRVSDYDGYNQ-F--VVHRS--PQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp SS----CCEEEEEEETTSCSC-E--EEEEE--SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred CC----ccceEEEEcCCCCCC-E--EEeCC--CCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 31 015899999764332 2 23333 4567789998 7999999999885 9999999999976433 2467
Q ss_pred EEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC-CC--cEEEEECCCCc
Q 011970 229 VQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAE 304 (474)
Q Consensus 229 V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~--tIkIWDv~tg~ 304 (474)
+.+++|||++ .||.......+..|++||+++|++ ..+..|...+..++|+ |++.+|++++. ++ .|.+||+.+++
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999855 466443333345699999999887 5677777889999997 67888888775 55 67777999988
Q ss_pred eEEeccccCCceEEEEEcCCCcEEEEEc-C---CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 305 LMEVSRTEFMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 305 ~~~~l~~h~~~v~sv~Fspdg~llaS~s-D---~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+.. +..|...+.+++|+|||++|++++ + .+|.+||++ |++ ..+..|. . +.+++|+|||++|++++.
T Consensus 303 ~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~-----~~~~~~spdg~~l~~~s~- 373 (415)
T 2hqs_A 303 PQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L-----DETPSLAPNGTMVIYSSS- 373 (415)
T ss_dssp CEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-----CEEEEECTTSSEEEEEEE-
T ss_pred EEE-EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-----cCCeEEcCCCCEEEEEEc-
Confidence 654 455667889999999999999887 4 489999996 666 5677764 3 689999999999999876
Q ss_pred CCccccccCCCC---eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC
Q 011970 380 EPEDQWMEGSAG---SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 456 (474)
Q Consensus 380 ~~~~~~~~s~Dg---tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD 456 (474)
|+ .|.+||+ +|+++..|.+|.. .|++++|||.
T Consensus 374 ----------~~~~~~l~~~d~-~g~~~~~l~~~~~----------------------------------~v~~~~~~~~ 408 (415)
T 2hqs_A 374 ----------QGMGSVLNLVST-DGRFKARLPATDG----------------------------------QVKFPAWSPY 408 (415)
T ss_dssp ----------ETTEEEEEEEET-TSCCEEECCCSSS----------------------------------EEEEEEECCC
T ss_pred ----------CCCccEEEEEEC-CCCcEEEeeCCCC----------------------------------CCcCCccccc
Confidence 44 8999997 5888999999985 8999999997
Q ss_pred CC
Q 011970 457 RN 458 (474)
Q Consensus 457 g~ 458 (474)
-+
T Consensus 409 ~~ 410 (415)
T 2hqs_A 409 LH 410 (415)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=287.35 Aligned_cols=315 Identities=8% Similarity=0.058 Sum_probs=238.5
Q ss_pred cccEEEEEee--ccEEEEeeC-CC-----eEEeeeccccceeeEeecCCC-----------------------ceEEEEE
Q 011970 88 RTKVIEIVAA--RDIVFALAH-SG-----VCAAFSRETNRRICFLNVSPD-----------------------EVIRSLF 136 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~-dg-----tiklW~~~tg~~l~~l~g~~~-----------------------~~i~sv~ 136 (474)
...|.++.|+ |+.||+++. |+ +|++||+.+|+....+.+... ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 3456777777 999999998 88 999999999998877765211 2388999
Q ss_pred EeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC---CCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEe
Q 011970 137 YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG---KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVF 213 (474)
Q Consensus 137 fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G---~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlW 213 (474)
|||||+.|++++. .++.+|++..| ++. .+..+ ...+..++|| |||+.||+++ +++|++|
T Consensus 116 ~SpDg~~l~~~~~-----------~~i~~~d~~~~~~~~~~---~l~~~--~~~~~~~~~S-PDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-----------GELYLYDLKQEGKAAVR---QLTHG--EGFATDAKLS-PKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp ECTTSSEEEEEET-----------TEEEEEESSSCSTTSCC---BCCCS--SSCEEEEEEC-TTSSEEEEEE-TTEEEEE
T ss_pred ECCCCCEEEEEeC-----------CcEEEEECCCCCcceEE---EcccC--CcccccccCC-CCCCEEEEEe-CCcEEEE
Confidence 9999999998762 48999999888 542 23322 3456689998 7999999988 5699999
Q ss_pred ecCCCeEEEEEcC--Cc----------------EEEEEEcCC-ceEEEEecCC---------------------------
Q 011970 214 DLKNYTMLYSISD--KH----------------VQEIKISPG-IMLLIFNRSS--------------------------- 247 (474)
Q Consensus 214 dl~tg~~l~tl~~--~~----------------V~~vafSpg-~~la~~s~~s--------------------------- 247 (474)
|+.++++...... .. +.+++|||+ ..|++.+.+.
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9999987654432 11 478999985 5566654321
Q ss_pred ---CCccEEEEecCC-CeEEEEEe--ecCcceeEEEEEecCCCeEEEEe-----CCCcEEEEECCCCceEEeccccCC--
Q 011970 248 ---SHVPLKILSIED-GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFM-- 314 (474)
Q Consensus 248 ---~D~tIkLWdi~t-G~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~-----~D~tIkIWDv~tg~~~~~l~~h~~-- 314 (474)
....|.+||+.+ |++..... .|...+..++| |++..|++.+ .+.+|.+||+.++++..++..|..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 112789999999 98766543 36678899999 6788888754 367899999999999888776653
Q ss_pred --ceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccC
Q 011970 315 --TPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 315 --~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~ll~tl~gH~~~~~~~~v~sv-afSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.+..++|+|||+++++++ |++++||.+ +|+ +..+.+|... |.++ +|||||+.|+..+.
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~~~~s~dg~~l~~~~~---------- 399 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-----VDELLAVDEKAGLAYFRAG---------- 399 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-----EEEEEEEETTTTEEEEEEC----------
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-----EEeEeEEeCCCCEEEEEEe----------
Confidence 346889999999999888 998888876 477 8899888654 5676 59999998865432
Q ss_pred CCC--eEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 389 SAG--SINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 389 ~Dg--tIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.|+ +++||++.. |+++..|.+ .. .+.+++|||||+.|+....
T Consensus 400 ~~~~~~~~l~~~~~~g~~~~~l~~-~~----------------------------------~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 400 IESARESQIYAVPLQGGQPQRLSK-AP----------------------------------GMHSASFARNASVYVDSWS 444 (741)
T ss_dssp SSCTTCBEEEEEETTCCCCEECCC-SC----------------------------------SEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEEEEEEEcCCCCeeeccc-CC----------------------------------CceEEEECCCCCEEEEEec
Confidence 244 899999864 777888876 32 6889999999999886643
Q ss_pred C----CcEEEcc
Q 011970 466 H----GLVHVWS 473 (474)
Q Consensus 466 D----gtVklWd 473 (474)
+ ..+.+|+
T Consensus 445 ~~~~p~~~~l~~ 456 (741)
T 2ecf_A 445 NNSTPPQIELFR 456 (741)
T ss_dssp ETTEEEEEEEEE
T ss_pred CCCCCCeEEEEE
Confidence 3 3466664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=269.79 Aligned_cols=243 Identities=12% Similarity=0.105 Sum_probs=196.1
Q ss_pred CCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEecc--------CCCCCccceeeeccccCceEEEEeCCC
Q 011970 127 SPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 127 ~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~--------G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.|...|.+++|+|+ +..||+++ .+ ..++||++.. ++...-..+. .|...+.+++|+ |+
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~----~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~-~~ 192 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKT----PS------SDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWN-PN 192 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEEC----SS------SCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEEC-TT
T ss_pred cCCCcEEEEEECCCCCcEEEEEC----CC------CcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeC-CC
Confidence 47788999999998 66777754 45 6899999976 2221111122 244556789998 68
Q ss_pred Ce-EEEEecCCCcEEEeecCCCeE-------EEEE--cCCcEEEEEEcC-Cc-eEEEEecCCCCccEEEEecCCC---eE
Q 011970 198 GK-VLTYSAQDSIYKVFDLKNYTM-------LYSI--SDKHVQEIKISP-GI-MLLIFNRSSSHVPLKILSIEDG---TV 262 (474)
Q Consensus 198 Gk-~LaS~s~D~tiKlWdl~tg~~-------l~tl--~~~~V~~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG---~~ 262 (474)
|+ +|++|+.|++|+|||+.++.. ...+ +...|.+|+|+| +. +++++ +.|+.|++||++++ ++
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~---~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---ADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE---ETTSEEEEEETTCSCSSSC
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE---eCCCeEEEEECCCCCCCcc
Confidence 88 999999999999999987432 2334 346799999998 44 55554 45899999999988 68
Q ss_pred EEEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEE
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAV 338 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIkl 338 (474)
+.++..|...+..++|+ |++. .+++++.|++|+|||+++ ++++..+.+|...|.+++|+|+++ +|++++ |++|+|
T Consensus 270 ~~~~~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp SEEEECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred eeEeecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 88898899999999998 4555 566789999999999998 667888899999999999999995 788888 999999
Q ss_pred EeCCC---------------cEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 339 WNFRG---------------ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 339 Wd~~G---------------~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
||+.. +++..+.+|... |+.++|+|+++ +|+|++. ||+|+||++.++.
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~l~s~s~-----------dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWIICSVSE-----------DNIMQVWQMAENV 412 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC-----EEEEEECSSSTTEEEEEET-----------TSEEEEEEECHHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCC-----ceEEEECCCCCCEEEEEEC-----------CCCEEEeEccccc
Confidence 99952 789999999887 79999999999 9999886 9999999986543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-30 Score=274.30 Aligned_cols=295 Identities=7% Similarity=-0.007 Sum_probs=232.7
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeec--cccceeeEeecCCCceEEEEEEee----CCCEEEEEEeecCCCccceeeeE
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNK----NNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~--~tg~~l~~l~g~~~~~i~sv~fsp----dg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
+..++|+ |++|++++.|++|++||+ .|++++.++.. . ...++|+||| ||+.|++++.. + .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g-~~p~~va~sp~~~~dg~~l~v~~~~---~------~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G-IEARSVESSKFKGYEDRYTIAGAYW---P------PQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C-SEEEEEEECCSTTCTTTEEEEEEEE---S------SE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C-CCcceEEeCCCcCCCCCEEEEEEcc---C------Ce
Confidence 6777787 999999999999999999 89999999984 3 4589999999 99999987632 3 58
Q ss_pred EEEeEeccCCCCCccceeeec------c-ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE--EEc-CCcEEEE
Q 011970 163 TKIEYIRRGKPDSGFALFESE------S-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS-DKHVQEI 232 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~------~-~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~--tl~-~~~V~~v 232 (474)
+.|||..++++.+.+++.... + -.++..+.|++.++.++++...|++|.+||+.+++++. ++. +..+.++
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~ 329 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence 999999999886544332110 1 12566899995456778899999999999999877544 444 4678899
Q ss_pred EEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEee----cCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCC---
Q 011970 233 KISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRN--- 302 (474)
Q Consensus 233 afSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~----h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~t--- 302 (474)
+|+|++. +++++ ..+.+|++||+++|++++++.. |..+ .+.|..|+++.+++++ .|++|.|||+.+
T Consensus 330 ~~spdg~~l~va~--~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~--g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 330 GWDSSHRYFMTAA--NNSNKVAVIDSKDRRLSALVDVGKTPHPGR--GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred eECCCCCEEEEEe--cCCCeEEEEECCCCeEEEeeccCCCCCCCC--CcccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 9998554 55553 3468999999999999999984 4333 3344446656666653 689999999999
Q ss_pred ----CceEEeccccCCceEEEEEcCCCcEEEEEc--------CCcEEEEeCC-CcEE-EEe--------ccCCCCcCCCC
Q 011970 303 ----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--------NRTVAVWNFR-GELV-TSF--------EDHLLWHPDCN 360 (474)
Q Consensus 303 ----g~~~~~l~~h~~~v~sv~Fspdg~llaS~s--------D~tIklWd~~-G~ll-~tl--------~gH~~~~~~~~ 360 (474)
+++++++.+|...+..++|+|||+.|.+++ +++|+|||++ ++++ +.| ..|..+
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~----- 480 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR----- 480 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE-----
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc-----
Confidence 899999999998999999999999999986 6799999995 8877 554 344444
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+..++|+|||+.|..+..+. .+.|++|.|||..|++|+++|+++.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~------~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNG------KNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EEEEEECSSSSEEEEEEECC------TTSCCEEEEEETTTTEEEEEECCTT
T ss_pred eEeccCCCCCCEEEEEeecC------CCCCCeEEEEECCCceEEEeecCCC
Confidence 78999999999999764311 1248999999999999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=294.48 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=199.0
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC--CCCCccceeeeccccCceEEEEeCCC--
Q 011970 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDVN-- 197 (474)
Q Consensus 122 ~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~~n-- 197 (474)
.++.| |.+.|.+++|+|+|+.|++++ .| ++++||++..+ ++.. .+. +|...|.+|+|+ |+
T Consensus 3 ~~l~g-H~~~V~~l~~s~dg~~latg~----~d------g~I~vwd~~~~~~~~~~---~l~-~h~~~V~~l~~s-~~~~ 66 (753)
T 3jro_A 3 VIANA-HNELIHDAVLDYYGKRLATCS----SD------KTIKIFEVEGETHKLID---TLT-GHEGPVWRVDWA-HPKF 66 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEE----TT------TEEEEEEEETTEEEEEE---EEC-CCSSCEEEEEEC-CTTS
T ss_pred eeccc-CcceeEEEEECCCCCeEEEEE----CC------CcEEEEecCCCCCccce---ecc-CCcCceEEEEec-CCCC
Confidence 45676 889999999999999999976 45 69999998743 3311 122 245667899998 55
Q ss_pred CeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC---ceEEEEecCCCCccEEEEecCCCe--EEEEEee
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGT--VLKVFYH 268 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg---~~la~~s~~s~D~tIkLWdi~tG~--~L~tl~~ 268 (474)
|++|++|+.|++|+|||+.+++ ++..+. ...|.+++|+|+ ..++++ +.|++|++||+.++. ....+.+
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg---s~dg~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCSSSCCCCEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE---eCCCcEEEEEeecCCCcceeEeec
Confidence 9999999999999999999997 566664 568999999984 566665 458999999999883 4456778
Q ss_pred cCcceeEEEEEec------------CCCeEEEEeCCCcEEEEECCCC----ceEEeccccCCceEEEEEcCC---CcEEE
Q 011970 269 LLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNA----ELMEVSRTEFMTPSAFIFLYE---NQLFL 329 (474)
Q Consensus 269 h~~~v~~V~F~~~------------~~~~ll~~~~D~tIkIWDv~tg----~~~~~l~~h~~~v~sv~Fspd---g~lla 329 (474)
|...+.+++|++. ++..+++++.|++|+|||++++ .++..+.+|...|.+++|+|+ +++|+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence 8899999999863 5788999999999999999987 566788999999999999999 99999
Q ss_pred EEc-CCcEEEEeCC-Cc-----EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 330 TFR-NRTVAVWNFR-GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~-----ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+++ |++|++||+. ++ .+....+|... |.+++|+|||++|++++. ||+|++||+.++.
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~l~~spdg~~l~s~s~-----------Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC-----CCCEEECTTTCCEEEECS-----------SSCEECCBCCSSS
T ss_pred EEecCCEEEEecCCCCCCcceeEEeccCCCCCc-----eEEEEEcCCCCEEEEEcC-----------CCEEEEEecCCCC
Confidence 999 9999999995 53 33344456665 689999999999999876 9999999998654
Q ss_pred E
Q 011970 403 C 403 (474)
Q Consensus 403 c 403 (474)
.
T Consensus 288 ~ 288 (753)
T 3jro_A 288 K 288 (753)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=276.98 Aligned_cols=309 Identities=10% Similarity=0.013 Sum_probs=217.4
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~---~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
|+++++ +.||++++||..+|++...+.+ |.. .|.+++|||||+.|++++.+.... ..=...++.|||+.+|++
T Consensus 28 g~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~-~~~~~~~i~~~d~~~~~~- 103 (723)
T 1xfd_A 28 TEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIY-QHSYTGYYVLSKIPHGDP- 103 (723)
T ss_dssp SCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCS-SSCCCSEEEEEESSSCCC-
T ss_pred CcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccce-eecceeeEEEEECCCCce-
Confidence 887766 7899999999999999888876 433 489999999999999987432210 000015788999999886
Q ss_pred Cccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcE------------------EEEE
Q 011970 175 SGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------------------QEIK 233 (474)
Q Consensus 175 ~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V------------------~~va 233 (474)
. .+-.. .+...+..++|| |||+.||+++. ++|++||+.+|++...... ..+ .+++
T Consensus 104 ~--~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 104 Q--SLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp E--ECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred E--eccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 1 12211 122235679998 79999999986 7999999999987665542 222 7899
Q ss_pred EcCC-ceEEEEecCC-------------------------------CCccEEEEecCCCeEEEEEeec------CcceeE
Q 011970 234 ISPG-IMLLIFNRSS-------------------------------SHVPLKILSIEDGTVLKVFYHL------LHRNKK 275 (474)
Q Consensus 234 fSpg-~~la~~s~~s-------------------------------~D~tIkLWdi~tG~~L~tl~~h------~~~v~~ 275 (474)
|||+ ..||+.+.+. .+.+|++||+.+|++...+..+ ...+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE
Confidence 9985 4566654321 1237999999999987777754 567899
Q ss_pred EEEEecCCCeEEEEe----CCCcEEEEECCCCceEEeccc-cCCceE----EEEEcCCCcEEEE--Ec-CC------cEE
Q 011970 276 VDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRT-EFMTPS----AFIFLYENQLFLT--FR-NR------TVA 337 (474)
Q Consensus 276 V~F~~~~~~~ll~~~----~D~tIkIWDv~tg~~~~~l~~-h~~~v~----sv~Fspdg~llaS--~s-D~------tIk 337 (474)
++|+ |++..+++.. .+.+|.+||+.++++..++.. |..++. .++|||||+.|+. +. |+ .|.
T Consensus 260 ~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~ 338 (723)
T 1xfd_A 260 VKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (723)
T ss_dssp EEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred EEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEE
Confidence 9998 5665554543 346899999999998877644 444443 7899999997764 33 77 577
Q ss_pred EEe-CCCcE---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC--CeEEEEeCCCC--eEEEEecC
Q 011970 338 VWN-FRGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA--GSINVSSILTG--KCLAKINA 409 (474)
Q Consensus 338 lWd-~~G~l---l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D--gtIklWdi~tG--~cl~tl~g 409 (474)
+|| ..+.. ++.+..+...+ +..++|||||++|+..+. .+ ++++||++..+ .....|.+
T Consensus 339 ~~d~~~~~~~~~~~~l~~~~~~~----~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 339 VSSSQPNSSNDNIQSITSGDWDV----TKILAYDEKGNKIYFLST----------EDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCE----EEEEEEETTTTEEEEEES----------SSCTTCCEEEEECSSTTCCCBCSST
T ss_pred EEeccCCCCccceeEeecCCeEE----EeeeEEcCCCCEEEEEEc----------CCCCcceEEEEEeCCCCCCcceecc
Confidence 788 45433 66666432221 234799999999986654 13 88999998643 24444443
Q ss_pred ---CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEE
Q 011970 410 ---TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 463 (474)
Q Consensus 410 ---H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg 463 (474)
|.. .|.+++|||||+.|+..
T Consensus 405 ~~~~~~----------------------------------~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 405 DLVENC----------------------------------TYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TSSSSC----------------------------------CCCEEEECTTSSEEEEE
T ss_pred cccCCC----------------------------------CeEEEEECCCCCEEEEE
Confidence 332 67889999999988754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=257.08 Aligned_cols=287 Identities=14% Similarity=0.135 Sum_probs=206.0
Q ss_pred eEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEe--ccCCCCCccceeeeccccCceEEEEeC------------
Q 011970 131 VIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDD------------ 195 (474)
Q Consensus 131 ~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~------------ 195 (474)
.+....|++.|. .|++++.....+ -.+ -.+++|||+ .+|++..+..+.. +..++..++|++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~-G~~-~~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPD-GSY-NVAYQLVDTGGAPGTVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTT-SCE-EEEEEEEECSSSTTCEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCC-CeE-EEEEEEEeCCCCCCCEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCC
Confidence 456666777774 555776542222 000 048999999 8998643222222 223344455541
Q ss_pred -CCCeEEEEecCC------CcEEEeecCCCeEEEEE--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 196 -VNGKVLTYSAQD------SIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 196 -~nGk~LaS~s~D------~tiKlWdl~tg~~l~tl--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
+.+..|++++.+ ++|++||+.++. +..+ +...|.+++||| |.+||+.+....+.+|++||+++|++. .
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 125667776654 799999997544 4444 357899999998 556666654333458999999999986 4
Q ss_pred EeecCcceeEEEEEecCCCeEEE-EeCCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEE
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAV 338 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~-~~~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIkl 338 (474)
+..|...+..++|+ |++.+|+. ++.|+ .|.+||+.++++ ..+.+|...+.+++|+|||+.|+.++ ++ .|.+
T Consensus 218 l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 218 VASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred eecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 66677789999998 67888884 45555 499999999987 45667888999999999999888876 44 6777
Q ss_pred EeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 339 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 339 Wd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
||+.+..+..+..|..+ +.+++|||||++|++++.. ..+.+|.+||+.+|++ ..+..|.
T Consensus 296 ~d~~~~~~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~--------~g~~~i~~~d~~~~~~-~~l~~~~------- 354 (415)
T 2hqs_A 296 VNINGGAPQRITWEGSQ-----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVLSSTF------- 354 (415)
T ss_dssp EETTSSCCEECCCSSSE-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEETTTCCE-EECCCSS-------
T ss_pred EECCCCCEEEEecCCCc-----ccCeEECCCCCEEEEEECc--------CCceEEEEEECCCCCE-EEecCCC-------
Confidence 78863334556666654 6889999999999988751 1246999999999988 4566654
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC---cEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG---LVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg---tVklWd~ 474 (474)
.+.+++|+|||+.|++++.|+ .|++||.
T Consensus 355 ----------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 355 ----------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp ----------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ----------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 688999999999999999887 7999873
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=281.74 Aligned_cols=329 Identities=9% Similarity=-0.004 Sum_probs=239.2
Q ss_pred ccccEEEEEee--ccEEEEeeCC------CeEEeeeccccceeeEeecCCCceE-------EEEEEeeCCCEEEEEEeec
Q 011970 87 KRTKVIEIVAA--RDIVFALAHS------GVCAAFSRETNRRICFLNVSPDEVI-------RSLFYNKNNDSLITVSVYA 151 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~d------gtiklW~~~tg~~l~~l~g~~~~~i-------~sv~fspdg~~Lis~S~~~ 151 (474)
|...|.+++|| |+.||.++.+ ..|.+|+..+|+ +..|.+ |...+ .+++|||||+.|++++.+.
T Consensus 51 ~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~-~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITY-FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCC-CCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEccc-CCCcccccccccccccCCCCCEEEEEECCcC
Confidence 56677788887 9999988754 489999998776 677876 66777 9999999999666544221
Q ss_pred CCCccceeeeEEEEeEeccCCC----------------------------------------------------------
Q 011970 152 SDNFSSLKCRSTKIEYIRRGKP---------------------------------------------------------- 173 (474)
Q Consensus 152 s~d~s~Lk~~~~~iw~i~~G~~---------------------------------------------------------- 173 (474)
..+ .. ..+.+|++..|++
T Consensus 129 ~~~-~~---~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 129 PFS-SM---TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp SST-TC---CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCc-cc---ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 110 00 1111222211110
Q ss_pred ------------------CCccceeeec----------cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 174 ------------------DSGFALFESE----------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 174 ------------------~~~~~lf~~~----------~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
+....+|... ....+..++|| |||+.||+++ |++|.+||+++.+ +..+.
T Consensus 205 ~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~S-pDG~~la~~~-~~~i~~~d~~~~~-l~~l~ 281 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLN-TDGRRILFSK-GGSIYIFNPDTEK-IEKIE 281 (1045)
T ss_dssp CCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEE-ESSSCEEEEE-TTEEEEECTTTCC-EEECC
T ss_pred cccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEc-CCCCEEEEEe-CCEEEEecCCceE-eeeec
Confidence 0011122110 00112356898 7999998874 8899999985444 44655
Q ss_pred CC-------------cEEEEEEc-CCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCc-ceeEEEEEecCCCeEEEE
Q 011970 226 DK-------------HVQEIKIS-PGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 226 ~~-------------~V~~vafS-pg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~-~v~~V~F~~~~~~~ll~~ 289 (474)
.+ .|.+++|| |++ .||+.+ +..|.+|++.+|+... +..|.. .+..++|+ ++..++..
T Consensus 282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s--dg~~l~~~ 354 (1045)
T 1k32_A 282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD--TKVAFIHG 354 (1045)
T ss_dssp CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS--SEEEEEEE
T ss_pred cCcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc--CCCeEEEE
Confidence 42 58899999 955 455553 5789999999988654 555656 78899997 67788888
Q ss_pred eCCCcEE-EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 290 QENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 290 ~~D~tIk-IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
+.+..|. +||+.++++.... +|...+..++|||||+.|++++ |++|++||+. |++...+++|... +.+++|
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~ 428 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM-----ITDFTI 428 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC-----CCCEEE
T ss_pred ECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC-----ccceEE
Confidence 8888888 9999998876665 8888999999999999999998 9999999995 9988888888876 578999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccccccc
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 446 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 446 (474)
||||++||+++... +-......+++|++||+.+|+ +..+.+|..
T Consensus 429 SpDG~~la~~~~~~-~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~---------------------------------- 472 (1045)
T 1k32_A 429 SDNSRFIAYGFPLK-HGETDGYVMQAIHVYDMEGRK-IFAATTENS---------------------------------- 472 (1045)
T ss_dssp CTTSCEEEEEEEEC-SSTTCSCCEEEEEEEETTTTE-EEECSCSSS----------------------------------
T ss_pred CCCCCeEEEEecCc-cccccCCCCCeEEEEECCCCc-EEEeeCCCc----------------------------------
Confidence 99999999886510 000000124699999999988 778888874
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+.+++|+|||+.|++++.++..++|+
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcc
Confidence 788899999999999999999888886
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=234.57 Aligned_cols=279 Identities=10% Similarity=0.013 Sum_probs=214.8
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~-~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
+++|++++.++++++||..+++.+.++...+.. .+.+++|+|||+.|+.++ ..+ ..+.+||+.+|+....
T Consensus 1 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~------~~v~~~d~~~~~~~~~ 71 (337)
T 1pby_B 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEE
T ss_pred CcEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC------CeEEEEECCCCCeEee
Confidence 367999999999999999999999998753322 478999999998876544 344 5899999999886432
Q ss_pred cceeeec-cccCceEEEEeCCCCeEEEEec------------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EE
Q 011970 177 FALFESE-SLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIM-LL 241 (474)
Q Consensus 177 ~~lf~~~-~~~~~~~V~Fs~~nGk~LaS~s------------~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~-la 241 (474)
+++-... +...+..++|+ |||+.|+.++ .|+.|.+||+++++.+..+. ...+..++|||++. |+
T Consensus 72 ~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 72 IDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150 (337)
T ss_dssp EECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred EEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEE
Confidence 2211100 01246689998 7999888876 68999999999999888776 45788999998554 55
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCC-----------------------cEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE-----------------------NLQI 297 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~-----------------------tIkI 297 (474)
++ ++.|.+||+++|+++..+..+.. ...+.|+ |++..+++.+ .++ .|.+
T Consensus 151 ~~-----~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 151 GL-----GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp EE-----SSSEEEEETTTTEEEEEECSTTT-TTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred Ee-----CCeEEEEECCCCcEeeeeecccc-CCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 54 36799999999999988875431 1233554 5666665544 333 4789
Q ss_pred EECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 298 LDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 298 WDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
||+.++++... +..|...+..++|+|||++++++ |++|.+||+. |+++..+..+.. +.+++|+|||++|+.
T Consensus 224 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHS------YYSVNVSTDGSTVWL 296 (337)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECTTSCEEEE
T ss_pred EeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCc------eeeEEECCCCCEEEE
Confidence 99999998632 44566788899999999998888 8999999995 898888875533 478999999999998
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
++. |++|++||+.+|+.++++..+.
T Consensus 297 ~~~-----------~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 297 GGA-----------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ESB-----------SSEEEEEETTTCCEEEEEECGG
T ss_pred EcC-----------CCcEEEEECcCCcEEEEEEcCC
Confidence 765 8999999999999999997764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=231.35 Aligned_cols=274 Identities=9% Similarity=0.024 Sum_probs=214.4
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe-EEEEecCCC
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDS 208 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk-~LaS~s~D~ 208 (474)
..+..++|+|+|+.|.+++..+.. .-+-.++.+||..+|+.... +.. ...+..++|+ |||+ +++++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~~~~~~---~~~--~~~~~~~~~s-~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRK---LDKGGVVYRLDPVTLEVTQA---IHN--DLKPFGATIN-NTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTT---TEESEEEEEECTTTCCEEEE---EEE--SSCCCSEEEE-TTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcC---CCCCccEEEEcCCCCeEEEE---Eec--CCCcceEEEC-CCCCEEEEEecCCC
Confidence 347899999999999887643221 11226899999999886442 222 2335689998 7888 566677789
Q ss_pred cEEEeecCCCeEEEEEcCC-----------cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 209 IYKVFDLKNYTMLYSISDK-----------HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~-----------~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
+|.+||+++++.+.++... .+.+++|+| |..++++.. +.++.|.+||+++++.+..+..+......+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 9999999999998887632 278999998 455655532 346789999999999999998555667889
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc----cCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEe
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~----h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl 349 (474)
+|+ |++++++++..|+.|.+||+.+++.+..+.. +...+..++|+|||+.+..++ +++|.+||.. |+++..+
T Consensus 191 ~~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 987 6788899998999999999999998876543 556788899999999665554 6999999995 9999888
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
..+.. ..++|+|||++|+.++. .+++|.+||+.+|+.+.++..+.
T Consensus 270 ~~~~~-------~~~~~s~dg~~l~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~------------------ 314 (353)
T 3vgz_A 270 AAPES-------LAVLFNPARNEAYVTHR----------QAGKVSVIDAKSYKVVKTFDTPT------------------ 314 (353)
T ss_dssp ECSSC-------CCEEEETTTTEEEEEET----------TTTEEEEEETTTTEEEEEEECCS------------------
T ss_pred EcCCC-------ceEEECCCCCEEEEEEC----------CCCeEEEEECCCCeEEEEEecCC------------------
Confidence 75432 36999999996665542 38999999999999999987654
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
.+++++|+|||+.|+.+..+
T Consensus 315 -----------------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 -----------------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----------------EEEEEEECTTSCEEEEEEEC
T ss_pred -----------------CCCeEEEcCCCCEEEEEEcc
Confidence 67899999999988777655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=277.25 Aligned_cols=316 Identities=11% Similarity=0.022 Sum_probs=229.0
Q ss_pred cccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeec--CCCccceeeeEEEE
Q 011970 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYA--SDNFSSLKCRSTKI 165 (474)
Q Consensus 88 ~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~--s~d~s~Lk~~~~~i 165 (474)
...+..+.++++.||..+. +.+.+|++.+|+ ...|.+ |...|.+++|||||+.||+++.+. ..+ .++.+
T Consensus 14 ~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~-~~~lt~-~~~~v~~~~~SPDG~~la~~s~~~~~~~~------~~i~~ 84 (1045)
T 1k32_A 14 PNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGS-TRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNT------ADLYF 84 (1045)
T ss_dssp CCCCEEEEEETTEEEEEET-TEEEEEETTTCC-EEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCE------EEEEE
T ss_pred cceEeCcEEeCCEEEEEEC-CcEEEEECCCCc-EEEeee-CCCcccCeEECCCCCEEEEEEeeccCCCC------CeEEE
Confidence 3457788888888888876 799999998766 456775 778899999999999999988652 122 57889
Q ss_pred eEeccCCCCCccceeeeccccCc-------eEEEEeCCCCeEEEEecCC------CcEEEeecCCCeEEEEE--------
Q 011970 166 EYIRRGKPDSGFALFESESLKWP-------GFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYSI-------- 224 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~~~~~~-------~~V~Fs~~nGk~LaS~s~D------~tiKlWdl~tg~~l~tl-------- 224 (474)
|++..|+.. .|..+ ...+ ..++|| |||++|++++.| ..+.+||++++++....
T Consensus 85 ~d~~~g~~~---~lt~~--~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 158 (1045)
T 1k32_A 85 YNGENGEIK---RITYF--SGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHIL 158 (1045)
T ss_dssp EETTTTEEE---ECCCC--CEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEE
T ss_pred EECCCCCeE---EcccC--CCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceee
Confidence 998877641 22222 2223 689998 799988887755 35777888777643110
Q ss_pred -------------------------------------------cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCC-C
Q 011970 225 -------------------------------------------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-G 260 (474)
Q Consensus 225 -------------------------------------------~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t-G 260 (474)
+...|..++|+|+ .++..+ +.|++++||.+.. |
T Consensus 159 ~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~--~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 159 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFIT--DIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEE--CTTSSCEEEEEETTS
T ss_pred eCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEE--eccCceEEEEEeCCC
Confidence 1123455666666 333222 2355666775432 2
Q ss_pred eEEEEE---------------------------------------ee-----------cCcceeEEEEEecCCCeEEEEe
Q 011970 261 TVLKVF---------------------------------------YH-----------LLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 261 ~~L~tl---------------------------------------~~-----------h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
..++.+ .+ |...+..++|++|++..|++++
T Consensus 236 ~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 236 KDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp CSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred CcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 222222 21 1224677888735566676666
Q ss_pred CCCcEEEEECCCCceEEeccccCC-ceEEEEEcCCCcEEEEEc-CCcEE-EEeCCCcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 291 ENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~-~v~sv~Fspdg~llaS~s-D~tIk-lWd~~G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
+++|.+||+.+++... +..|.. .+..++|+ ||+.|++++ +..|. +||+.+..+..+.+|... +..++||
T Consensus 316 -~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~-----~~~~~~S 387 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVD 387 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-----EEEEEEC
T ss_pred -cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc-----eeeeEEC
Confidence 7889999998888665 455666 89999999 999999998 77888 889975445566677654 6899999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccC
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 447 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (474)
|||++||+++. |++|++||+.+|++...+.+|.. .
T Consensus 388 pDG~~la~~~~-----------~~~v~~~d~~tg~~~~~~~~~~~----------------------------------~ 422 (1045)
T 1k32_A 388 RNGKFAVVAND-----------RFEIMTVDLETGKPTVIERSREA----------------------------------M 422 (1045)
T ss_dssp TTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECSSS----------------------------------C
T ss_pred CCCCEEEEECC-----------CCeEEEEECCCCceEEeccCCCC----------------------------------C
Confidence 99999999876 89999999999999988888875 7
Q ss_pred EEEEEEcCCCCEEEEEcCCC----------cEEEccC
Q 011970 448 ITSLFYDEERNEIYTGNRHG----------LVHVWSN 474 (474)
Q Consensus 448 V~slafSpDg~~LaSgs~Dg----------tVklWd~ 474 (474)
|.+++|||||+.||+++.++ +|++||.
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 88899999999999988754 9999983
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=266.69 Aligned_cols=307 Identities=12% Similarity=0.062 Sum_probs=220.0
Q ss_pred EEeeccEEEEeeCCCeEEeeecccccee-eEeecCCC-----------------ceEEEEEEeeCCCEEEEEEeecCCCc
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRI-CFLNVSPD-----------------EVIRSLFYNKNNDSLITVSVYASDNF 155 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l-~~l~g~~~-----------------~~i~sv~fspdg~~Lis~S~~~s~d~ 155 (474)
+.+.++.+++.+.|+ | +||..||+.+ ..|-. +. ..|.+++|||| ..|+.++ +
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~----~-- 100 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFS-AADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT----Q-- 100 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEE-HHHHHTTC-----------CCCEEEEETTT-TEEEEEE----T--
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeec-hhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----C--
Confidence 344477888888888 7 9999999984 45443 22 35999999999 5555432 2
Q ss_pred cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-----CeEEEEEcC--Cc
Q 011970 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSISD--KH 228 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-----g~~l~tl~~--~~ 228 (474)
.++.+||+.+|++. .+... ...+..++|| |||+.||++ .|++|++||+.+ |+....... ..
T Consensus 101 -----~~i~~~d~~~~~~~---~l~~~--~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 101 -----GGLVGFDMLARKVT---YLFDT--NEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp -----TEEEEEETTTTEEE---EEECC--TTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred -----CEEEEEECCCCceE---EccCC--cccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 58999999888752 23332 2345578998 799999995 689999999998 887654332 22
Q ss_pred --------------EEEEEEcCCc-eEEEEec------------------------------CCCCccEEEEecCCCeEE
Q 011970 229 --------------VQEIKISPGI-MLLIFNR------------------------------SSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 229 --------------V~~vafSpg~-~la~~s~------------------------------~s~D~tIkLWdi~tG~~L 263 (474)
+.+++|||++ .||+.+. ...+..|++||+++|++.
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 4899999855 5555531 124578999999999976
Q ss_pred EEEe--ecCcceeEEEEEecCCCeEEEEeCCC-----cEEEEECCCC-ceEEecc-ccCCc---eEEEEEcC--CCcEEE
Q 011970 264 KVFY--HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNA-ELMEVSR-TEFMT---PSAFIFLY--ENQLFL 329 (474)
Q Consensus 264 ~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~-----tIkIWDv~tg-~~~~~l~-~h~~~---v~sv~Fsp--dg~lla 329 (474)
.... .|...+..++|+ |++..|++++.|+ +|.+||+.++ ++..... ++..+ +..++|+| ||++++
T Consensus 249 ~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp ECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred eeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 6553 455678999998 6788888877665 9999999999 4433332 22222 35789999 999999
Q ss_pred EEc-CCcEEEEeC--CCcEEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCC----eEEEEeCCCC
Q 011970 330 TFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAG----SINVSSILTG 401 (474)
Q Consensus 330 S~s-D~tIklWd~--~G~ll~tl~gH~~~~~~~~v~s-vafSpDg~~LaS~s~~~~~~~~~~s~Dg----tIklWdi~tG 401 (474)
+++ |++++||++ +|++++.+.+|... +.+ ++|+|||+.|+..+. .++ .|..||+.+|
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~-----v~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWE-----VTNFAGFDPKGTRLYFEST----------EASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSC-----EEEEEEECTTSSEEEEEES----------SSCTTCBEEEEEETTCC
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeE-----EEeeeEEcCCCCEEEEEec----------CCCCceEEEEEEEcCCC
Confidence 998 999999987 48899999888654 555 799999998876653 133 6777787777
Q ss_pred eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC----CcEEEccC
Q 011970 402 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLVHVWSN 474 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D----gtVklWd~ 474 (474)
+ +..|. |.. .+.+++|||||+.|+.+..+ +.|++||.
T Consensus 393 ~-~~~l~-~~~----------------------------------~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 393 K-TKDLT-PES----------------------------------GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp C-CEESC-CSS----------------------------------SEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred C-ceecc-CCC----------------------------------ceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 6 55554 442 78999999999998876443 56999973
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=223.23 Aligned_cols=280 Identities=14% Similarity=0.109 Sum_probs=205.9
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~ 176 (474)
+..+++.+.+++|++||..+|+.+..+.. +...+ +++|+|||+.|+.++. .+ ..+.+||+.+|++ ..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~---~~------~~i~~~d~~~~~~~~~- 77 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSD---FC------QTLVQIETQLEPPKVV- 77 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEES---TT------CEEEEEECSSSSCEEE-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeC---CC------CeEEEEECCCCceeEE-
Confidence 56688899999999999999999999886 44556 9999999998877652 33 4889999998886 22
Q ss_pred cceeeeccccCceE-EEEeCCCCeEEEEecCCC---cEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCc
Q 011970 177 FALFESESLKWPGF-VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHV 250 (474)
Q Consensus 177 ~~lf~~~~~~~~~~-V~Fs~~nGk~LaS~s~D~---tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~ 250 (474)
.+.. ...+.. ++|+ |||++|+.+..++ +|++||+++++++.++. .....+++|+|++ .++++.. .+.
T Consensus 78 --~~~~--~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~ 150 (331)
T 3u4y_A 78 --AIQE--GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR--SSA 150 (331)
T ss_dssp --EEEE--CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE--TTT
T ss_pred --eccc--CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec--CCC
Confidence 1222 223446 9998 7999998555553 99999999999988886 4578999999855 4665533 346
Q ss_pred c-EEEEecCCCeEEEEE----eecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCce---EEeccccCCceEEEEE
Q 011970 251 P-LKILSIEDGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL---MEVSRTEFMTPSAFIF 321 (474)
Q Consensus 251 t-IkLWdi~tG~~L~tl----~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~F 321 (474)
. |++|++.....+... .........++|+ |++.++++++ .+++|++||+.++++ +..+..+ ..+..++|
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV 228 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence 7 999998764433211 1223456889987 6677777764 789999999999998 7666544 57889999
Q ss_pred cCCCcEEEEE-c-CCcEEEEeCC-CcE--EEEeccC----CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 322 LYENQLFLTF-R-NRTVAVWNFR-GEL--VTSFEDH----LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 322 spdg~llaS~-s-D~tIklWd~~-G~l--l~tl~gH----~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
+|||++++.+ . +++|.+||.. |++ +.++..+ ..+.. ..+.++|+|||++|+.++. .+++
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~----------~~~~ 296 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF--GANQMALNKTETKLFISAN----------ISRE 296 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT--TCCCEEECTTSSEEEEEET----------TTTE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc--cccceEECCCCCEEEEecC----------CCCc
Confidence 9999965544 4 8899999995 887 6666655 22211 1356899999999876653 3789
Q ss_pred EEEEeCCCCeEEEEecCCC
Q 011970 393 INVSSILTGKCLAKINATN 411 (474)
Q Consensus 393 IklWdi~tG~cl~tl~gH~ 411 (474)
|++||+.+ +.+..+.++.
T Consensus 297 v~v~d~~~-~~~~~~~~~~ 314 (331)
T 3u4y_A 297 LKVFTISG-KVVGYVAGIE 314 (331)
T ss_dssp EEEEETTS-CEEEECTTCC
T ss_pred EEEEEecC-Ccccceeccc
Confidence 99999865 4455555544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=263.71 Aligned_cols=281 Identities=13% Similarity=0.130 Sum_probs=212.4
Q ss_pred CceEEEEEEeeCCCEEEEEEe-ecCCCccceeeeEEEEeEeccCCCCCccceeeec-cc---------------------
Q 011970 129 DEVIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SL--------------------- 185 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~-~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~-~~--------------------- 185 (474)
.+.|.+++|||||+.|++++. ++... ..++.+|++.+|+... ++... ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~-----~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRN-----QLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTT-----EEEEEEEETTTCCEEE---EECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCc-----ccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhcc
Confidence 356999999999999999874 32111 1389999999988622 23221 01
Q ss_pred -cCceEEEEeCCCCeEEEEecCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCC
Q 011970 186 -KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 186 -~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg---~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t 259 (474)
..+..++|| |||++|++++. ++|++||+.++ ++ ..+. ...+..++|||++..+++.. +..|++||+.+
T Consensus 108 ~~~v~~~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~ 181 (741)
T 2ecf_A 108 MTGIVDYQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLAS 181 (741)
T ss_dssp CEESCCCEEC-TTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTT
T ss_pred ccCcceeEEC-CCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccCCcccccccCCCCCCEEEEEe---CCcEEEEecCC
Confidence 125579998 79999999886 99999999988 43 3333 46799999998665444432 35899999999
Q ss_pred CeEEEEEeecCcc----------------eeEEEEEecCCCeEEEEeCCC------------------------------
Q 011970 260 GTVLKVFYHLLHR----------------NKKVDFIEQFNEKLLVKQENE------------------------------ 293 (474)
Q Consensus 260 G~~L~tl~~h~~~----------------v~~V~F~~~~~~~ll~~~~D~------------------------------ 293 (474)
|++.+....+... +..++|+ |++.+|++++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 9987765544332 4779997 7888899887665
Q ss_pred ---cEEEEECCC-CceEEecc--ccCCceEEEEEcCCCcEEEEEc------CCcEEEEeCC-CcEEEEeccCCC-CcCCC
Q 011970 294 ---NLQILDVRN-AELMEVSR--TEFMTPSAFIFLYENQLFLTFR------NRTVAVWNFR-GELVTSFEDHLL-WHPDC 359 (474)
Q Consensus 294 ---tIkIWDv~t-g~~~~~l~--~h~~~v~sv~Fspdg~llaS~s------D~tIklWd~~-G~ll~tl~gH~~-~~~~~ 359 (474)
+|.+||+.+ +++..+.. .|...+..++| |||+.|+..+ +.+|.+||+. |++...+..|.. |+.
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-- 337 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP-- 337 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--
Confidence 889999999 99877654 47788999999 9999998653 4589999995 999888887753 421
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
.+.+++|||||++|++++. ||+++||.+. +|+ +..|.+|..
T Consensus 338 ~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~~~~~~-~~~l~~~~~-------------------------- 379 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSER-----------TGFQHLYRIDSKGK-AAALTHGNW-------------------------- 379 (741)
T ss_dssp CCSCCEECTTSCEEEEECT-----------TSSCEEEEECSSSC-EEESCCSSS--------------------------
T ss_pred cCCceEECCCCeEEEEecC-----------CCccEEEEEcCCCC-eeeeeecce--------------------------
Confidence 1468999999999988765 8888888775 577 888888864
Q ss_pred ccccccccCEEEE-EEcCCCCEEE-EEcCCC--cEEEcc
Q 011970 439 STVGEALEDITSL-FYDEERNEIY-TGNRHG--LVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~sl-afSpDg~~La-Sgs~Dg--tVklWd 473 (474)
.|.++ +|||||+.|+ +++.|+ +++||+
T Consensus 380 --------~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 380 --------SVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp --------CEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred --------EEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 78787 5999999875 566666 899996
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=264.74 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=200.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccc--cCceEEEEeCCCCeEEEEecCC-
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQD- 207 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~~nGk~LaS~s~D- 207 (474)
.+.+++|||||++|++ + .| .++++|++.+|++. .++..... ..+.+++|| |||++||+++.|
T Consensus 18 ~~~~~~~spdg~~~~~-~----~d------g~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~ 82 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QK------GTVRLWNVETNTST---VLIEGKKIESLRAIRYEIS-PDREYALFSYNVE 82 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SS------SCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEEC-TTSSEEEEEESCC
T ss_pred cccccEEcCCCcEEEE-e----CC------CCEEEEECCCCcEE---EEeccccccccccceEEEC-CCCCEEEEEecCc
Confidence 3688999999996654 2 34 58999999999863 23432111 136799998 799999999875
Q ss_pred --------CcEEEeecCCCeEEEEEc-----CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcc-
Q 011970 208 --------SIYKVFDLKNYTMLYSIS-----DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR- 272 (474)
Q Consensus 208 --------~tiKlWdl~tg~~l~tl~-----~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~- 272 (474)
++|.|||++++++ ..+. ...|..++|||++ +||..+ +.+|++||+.+|++.+....+...
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTT
T ss_pred cceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEE----CCeEEEEECCCCceEEEecCCCCCc
Confidence 7788999999986 3343 1248899999855 566553 368999999999988776643332
Q ss_pred -----------------eeEEEEEecCCCeEEEEeCCC----------------------------------cEEEEECC
Q 011970 273 -----------------NKKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVR 301 (474)
Q Consensus 273 -----------------v~~V~F~~~~~~~ll~~~~D~----------------------------------tIkIWDv~ 301 (474)
+..++|+ |++.+|++++.|+ +|++||+.
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 3789997 7888888876543 89999999
Q ss_pred CCceEEecccc------CCceEEEEEcCCCcEEEEEc-----CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECC
Q 011970 302 NAELMEVSRTE------FMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITS 368 (474)
Q Consensus 302 tg~~~~~l~~h------~~~v~sv~Fspdg~llaS~s-----D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSp 368 (474)
++++...+..+ ...+.+++|||||+++++.+ +.+|.+||+. |++...+.. |..|+... ...++|||
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~~~~~sp 315 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-NEEPVFSK 315 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC-CCCCEECT
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc-CCCceEcC
Confidence 99976665544 66889999999999997764 2589999995 898887754 44553100 02789999
Q ss_pred CCCEEEEE-ecCCCccccccCCCC------eEEEEe-CCCCe--EEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 369 DQDLIISY-CKAEPEDQWMEGSAG------SINVSS-ILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 369 Dg~~LaS~-s~~~~~~~~~~s~Dg------tIklWd-i~tG~--cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
||+.|+.. +. .|+ .|.+|| ..+|+ |+..|..+..
T Consensus 316 dg~~l~~~~~~----------~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~-------------------------- 359 (723)
T 1xfd_A 316 DGRKFFFIRAI----------PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW-------------------------- 359 (723)
T ss_dssp TSCSEEEEEEE----------CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS--------------------------
T ss_pred CCCeEEEEEec----------ccCCCcceeEEEEEeccCCCCccceeEeecCCe--------------------------
Confidence 99988864 32 255 577777 34444 2666654331
Q ss_pred ccccccccCEEE-EEEcCCCCEEEEEcCC---CcEEEcc
Q 011970 439 STVGEALEDITS-LFYDEERNEIYTGNRH---GLVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~s-lafSpDg~~LaSgs~D---gtVklWd 473 (474)
.+.. ++|||||+.||..+.+ ++++||+
T Consensus 360 --------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 360 --------DVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp --------CEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred --------EEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 3444 6999999999866554 8899996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=224.13 Aligned_cols=278 Identities=9% Similarity=0.081 Sum_probs=193.9
Q ss_pred EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE-ecCCCcEEEe
Q 011970 135 LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVF 213 (474)
Q Consensus 135 v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS-~s~D~tiKlW 213 (474)
..|+++++.+..+. +.+ .++.+||+.+|++... +.. ....+ .++|+ |||+.|+. +..+++|.+|
T Consensus 3 ~~~~~~~~~~~v~~---~~~------~~v~~~d~~~~~~~~~---~~~-~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 3 AMFQTTSNFGIVVE---QHL------RRISFFSTDTLEILNQ---ITL-GYDFV-DTAIT-SDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp ----CCCCEEEEEE---GGG------TEEEEEETTTCCEEEE---EEC-CCCEE-EEEEC-SSSCEEEEEESTTCEEEEE
T ss_pred eeEcCCCCEEEEEe---cCC------CeEEEEeCcccceeee---EEc-cCCcc-eEEEc-CCCCEEEEEeCCCCeEEEE
Confidence 35666666654332 244 6899999999987432 222 23445 89998 79985554 4458999999
Q ss_pred ecCCCeE-EEEEc-CCcEEE-EEEcCCceEEEEecCCCCc--cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 214 DLKNYTM-LYSIS-DKHVQE-IKISPGIMLLIFNRSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 214 dl~tg~~-l~tl~-~~~V~~-vafSpg~~la~~s~~s~D~--tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|+++++. ...+. ...... ++|+|++..+..+ ...++ .|++||+++|+++.++..+ .....++|+ |++.++++
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s-pdg~~l~~ 144 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTV-TGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS-PNGNGLIL 144 (331)
T ss_dssp ECSSSSCEEEEEEECSSCCCCEEECTTSSEEEEC-CCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC-TTSSCEEE
T ss_pred ECCCCceeEEecccCCCCccceEECCCCCEEEEe-cCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC-CCCCEEEE
Confidence 9999997 66665 334445 9999855433332 22223 8999999999999998854 445889997 66776777
Q ss_pred E-eCCCc-EEEEECCCCceE-----EeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-CcE---EEEeccCCCC
Q 011970 289 K-QENEN-LQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLW 355 (474)
Q Consensus 289 ~-~~D~t-IkIWDv~tg~~~-----~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G~l---l~tl~gH~~~ 355 (474)
+ ..++. |++||+.....+ +.+ .+...+..++|+|||+ ++++.. +++|.+||++ |++ +.++..+..
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~- 222 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL- 222 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC-
T ss_pred EecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC-
Confidence 5 56688 999998864332 222 3345689999999998 556666 9999999995 998 888886643
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNK 433 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
+..++|+|||++|+.++. .+++|.+||+.+|+. +.++..+-.. .
T Consensus 223 -----~~~~~~spdg~~l~v~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~-~------------------ 268 (331)
T 3u4y_A 223 -----PGTIVVSRDGSTVYVLTE----------STVDVFNFNQLSGTLSFVKSFGHGLLI-D------------------ 268 (331)
T ss_dssp -----CCCEEECTTSSEEEEECS----------SEEEEEEEETTTTEEEEEEEEECCCCC-C------------------
T ss_pred -----CceEEECCCCCEEEEEEc----------CCCEEEEEECCCCceeeeccccccccc-C------------------
Confidence 478999999997766542 378899999999998 6666554210 0
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEE-cCCCcEEEccC
Q 011970 434 SSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWSN 474 (474)
Q Consensus 434 ~~~~~~~~~~~l~~V~slafSpDg~~LaSg-s~DgtVklWd~ 474 (474)
++....+.+++|+|||+.|+.+ ..+++|++||.
T Consensus 269 --------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 269 --------PRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp --------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred --------CCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 0001123568999999998655 45679999984
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=256.89 Aligned_cols=275 Identities=10% Similarity=-0.036 Sum_probs=201.0
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.++++.+...+...|++|+|+|||+.||++|.. + .+++||++..|++. .+..+ +...+..++|| ||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~---~------g~~~lw~~~~g~~~---~lt~~-~~~~~~~~~~s-pd 75 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFS---E------GSVNAYLYDGGETV---KLNRE-PINSVLDPHYG-VG 75 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEE---T------TEEEEEEEETTEEE---ECCSS-CCSEECEECTT-CS
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEcc---C------CceeEEEEcCCCcE---eeecc-cccccccccCC-CC
Confidence 344444443334579999999999999998742 3 57899998666642 12222 22345689998 78
Q ss_pred CeEEEEecC---CCcEEEeecCC---CeEEEEEc-CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEee
Q 011970 198 GKVLTYSAQ---DSIYKVFDLKN---YTMLYSIS-DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (474)
Q Consensus 198 Gk~LaS~s~---D~tiKlWdl~t---g~~l~tl~-~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~ 268 (474)
++|++++. +..++||.+.. |... .+. ...+...+|||+ ..++++. +.+. +.|||+++|++.+...+
T Consensus 76 -~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~--~~~~-~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 76 -RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGA--TEDR-VALYALDGGGLRELARL 150 (582)
T ss_dssp -EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEE--CSSC-EEEEEEETTEEEEEEEE
T ss_pred -eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEec--CCCC-ceEEEccCCcEEEeecC
Confidence 88887765 66778876532 3333 333 233445567753 3344432 3344 44999999988766664
Q ss_pred cCcceeEEEEEecCCCeEEEEeCC----CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CC--cEEEEeC
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQEN----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNF 341 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D----~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~--tIklWd~ 341 (474)
+. .+++|+ |+|.+|++++.| .+|.+||+.+|++. .+.+|...+..++|||||+.|+++. |+ +|.+||+
T Consensus 151 ~~---~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 151 PG---FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp SS---CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred CC---ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 43 889998 678888877665 78999999999976 4577888899999999999999777 88 9999999
Q ss_pred C-CcEEEEeccCCCCcCCCCeeEEE--------ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 342 R-GELVTSFEDHLLWHPDCNTNNIY--------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 342 ~-G~ll~tl~gH~~~~~~~~v~sva--------fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
+ |++. .+.+|... +.+++ |||||+++++++. |++++||++ |+++.++ ..
T Consensus 226 ~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~--g~~~~~~---~~ 283 (582)
T 3o4h_A 226 RDGSVE-DLELPSKD-----FSSYRPTAITWLGYLPDGRLAVVARR-----------EGRSAVFID--GERVEAP---QG 283 (582)
T ss_dssp TTCCEE-ECCCSCSH-----HHHHCCSEEEEEEECTTSCEEEEEEE-----------TTEEEEEET--TEEECCC---SS
T ss_pred CCCcEE-EccCCCcC-----hhhhhhccccceeEcCCCcEEEEEEc-----------CCcEEEEEE--CCeeccC---CC
Confidence 6 7777 88888765 45667 9999999999887 999999998 8887622 22
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc---EEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL---VHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt---VklWd 473 (474)
.|.+++|| ||+.+++++.+.+ |.+||
T Consensus 284 ----------------------------------~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 284 ----------------------------------NHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ----------------------------------EEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ----------------------------------ceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 78899999 9999999998865 55655
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-26 Score=219.02 Aligned_cols=276 Identities=9% Similarity=0.044 Sum_probs=192.4
Q ss_pred EEEEeeCCCeEEeeecc-cc--ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--cCCCC
Q 011970 100 IVFALAHSGVCAAFSRE-TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPD 174 (474)
Q Consensus 100 ~las~s~dgtiklW~~~-tg--~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G~~~ 174 (474)
++++.+.|++|++|++. +| +.+..+. +...+.+++|+|||+.|++++. ++ ..+.+|++. .|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~---~~------~~v~~~~~~~~~~~~~ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVR---PE------FRVLAYRIAPDDGALT 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEET---TT------TEEEEEEECTTTCCEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeec---CC------CeEEEEEecCCCCcee
Confidence 34444889999999985 45 4455554 4567899999999999988662 33 588999987 66642
Q ss_pred CccceeeeccccCceEEEEeCCCCeEEEEec-CCCcEEEeec---CCCeEEEEEcC-CcEEEEEEcCCc-eEEEEecCCC
Q 011970 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDL---KNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSS 248 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl---~tg~~l~tl~~-~~V~~vafSpg~-~la~~s~~s~ 248 (474)
. ...+.. ...|..++|+ |||+.|+.++ .|++|++||+ .+++.+..+.. ..+.+++|+|++ .+++++ ..
T Consensus 76 ~-~~~~~~--~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~ 149 (343)
T 1ri6_A 76 F-AAESAL--PGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LK 149 (343)
T ss_dssp E-EEEEEC--SSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GG
T ss_pred e-cccccc--CCCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec--CC
Confidence 1 011221 2256789998 7999775554 5899999999 44456666653 568999999854 566553 24
Q ss_pred CccEEEEecCC-CeEEE----EEee-cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCce--EEe---cc-cc-
Q 011970 249 HVPLKILSIED-GTVLK----VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAEL--MEV---SR-TE- 312 (474)
Q Consensus 249 D~tIkLWdi~t-G~~L~----tl~~-h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~--tg~~--~~~---l~-~h- 312 (474)
++.|++||+.+ |+... .+.. .......++|+ |++..+++++ .+++|++||+. +++. ++. +. ++
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 228 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence 78999999998 86643 2332 23466789987 6677777765 89999999995 4554 222 22 11
Q ss_pred -CCceEEEEEcCCCcEEE-EEc-CCcEEEEeCC--C---cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 313 -FMTPSAFIFLYENQLFL-TFR-NRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 313 -~~~v~sv~Fspdg~lla-S~s-D~tIklWd~~--G---~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
...+..++|+|||+.|+ +.+ |++|++||++ + +.+..+..+.. +..++|+|||++|+.++.
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~------ 296 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ------PRGFNVDHSGKYLIAAGQ------ 296 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS------CCCEEECTTSSEEEEECT------
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc------cceEEECCCCCEEEEecC------
Confidence 34677899999998665 565 9999999995 2 34556665543 468999999999888763
Q ss_pred cccCCCCeEEEE--eCCCCe--EEEEecC
Q 011970 385 WMEGSAGSINVS--SILTGK--CLAKINA 409 (474)
Q Consensus 385 ~~~s~DgtIklW--di~tG~--cl~tl~g 409 (474)
.|++|.+| |..+|+ .+..+..
T Consensus 297 ----~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 297 ----KSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp ----TTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred ----CCCeEEEEEEcCCCceeeEcccccc
Confidence 38999999 555775 3455544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=217.48 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=187.2
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEEcC---CcEEEEEEcC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD---KHVQEIKISP 236 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl~~---~~V~~vafSp 236 (474)
.++.+|++..|+.. .+..+ ...+..++|+ |||++|++++ |+.|++||+++ +++...... ..|.+++|||
T Consensus 22 ~~i~~~d~~~~~~~---~~~~~--~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 22 SSIEIFNIRTRKMR---VVWQT--PELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp EEEEEEETTTTEEE---EEEEE--SSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred eeEEEEeCCCCcee---eeccC--CcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 79999999888762 23433 3567799998 7999999987 88999999999 887665542 4688999998
Q ss_pred CceEEEEecCCCCccEEEE--ecCCCeEEEEEeecCcceeEEEEEecCCCeEE-EEeCCCcEEEEEC--CCCceEEeccc
Q 011970 237 GIMLLIFNRSSSHVPLKIL--SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNAELMEVSRT 311 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLW--di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll-~~~~D~tIkIWDv--~tg~~~~~l~~ 311 (474)
++..+.+.....+..++|| ++.+++ .+.+..+. .+..++|+ |++.+|+ +++.|++++||++ .+++. ..+..
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~s-pdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 170 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWS-PDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH 170 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEEC-TTSSEEEEEEEETTEEEEEEEETTTCCE-EECCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEEC-CCCCEEEEEECCCCceEEEEEECCCCcc-eEccc
Confidence 5544444332233445555 555655 45555443 47888987 6777787 4678999999995 44554 45566
Q ss_pred cCCceEEEEEcCCCcEEEEE-c-CCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 312 EFMTPSAFIFLYENQLFLTF-R-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~-s-D~tIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
|...+..++|+|||+.|+.+ . |+.++||++ .++.+..+..|... +..++|+|||++|+.++..........
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG-----DWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE-----EEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc-----cCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 77889999999999977755 4 899999998 47788889888754 688999999999998875100000000
Q ss_pred CCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 388 GSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 388 s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
..++.|.+||+.+|+. +..+.+|.. .|..++|+|||+.|++++.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQG----------------------------------TMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTT----------------------------------TSCSCCBCTTSSEEEEEEE
T ss_pred cCceEEEEEecCCCCceeeeccCCCCc----------------------------------ccccceECCCCCEEEEEEe
Confidence 0136799999998866 555557774 6788999999999998886
Q ss_pred CC
Q 011970 466 HG 467 (474)
Q Consensus 466 Dg 467 (474)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=258.44 Aligned_cols=313 Identities=11% Similarity=0.038 Sum_probs=215.7
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCc---eEEEEEEeeCCCEEEEEEeec-----CCCccceeeeEEEEeEec
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYA-----SDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~---~i~sv~fspdg~~Lis~S~~~-----s~d~s~Lk~~~~~iw~i~ 169 (474)
++++++ +.|+++++||..+|++...+.+ +.. .|.+++|||||+.|++++... +.+ .++++|++.
T Consensus 27 g~~~~~-~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~------~~i~~~d~~ 98 (719)
T 1z68_A 27 QEYLHQ-SADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT------ATYYIYDLS 98 (719)
T ss_dssp SEEEEE-CTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE------EEEEEEETT
T ss_pred CeEEEE-cCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCceeEEeecc------eEEEEEECC
Confidence 655554 4699999999999999888775 323 389999999999999987532 123 689999999
Q ss_pred cCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C--CcE-----------------
Q 011970 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D--KHV----------------- 229 (474)
Q Consensus 170 ~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~--~~V----------------- 229 (474)
+|++....++ . ..+..++|| |||+.||+++ |++|++||+.+|++..... + ..|
T Consensus 99 ~g~~~~~~~l-~----~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NGEFVRGNEL-P----RPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTEECCSSCC-C----SSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCccccceec-C----cccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 8886321122 1 235579998 7999999986 7899999999998764332 1 223
Q ss_pred EEEEEcCC-ceEEEEecCC-------------------------------CCccEEEEecCCCeEE--------EEEeec
Q 011970 230 QEIKISPG-IMLLIFNRSS-------------------------------SHVPLKILSIEDGTVL--------KVFYHL 269 (474)
Q Consensus 230 ~~vafSpg-~~la~~s~~s-------------------------------~D~tIkLWdi~tG~~L--------~tl~~h 269 (474)
.+++|||+ ..||+.+.+. ...+|++||+.+|+++ ..+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 48999985 4566554321 1227999999998863 223457
Q ss_pred CcceeEEEEEecCCCeEEEE-e--CC--CcEEEEE----CCCCceEEec----cccCCceE-----EEEEcCCCcEEE--
Q 011970 270 LHRNKKVDFIEQFNEKLLVK-Q--EN--ENLQILD----VRNAELMEVS----RTEFMTPS-----AFIFLYENQLFL-- 329 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~-~--~D--~tIkIWD----v~tg~~~~~l----~~h~~~v~-----sv~Fspdg~lla-- 329 (474)
...+..++|+ |+ +++++. . .+ ..|.+|| +.+|++..++ .+|..++. .++|||||+.|+
T Consensus 252 ~~~~~~~~~S-pD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 252 DYYFSWLTWV-TD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp CEEEEEEEES-SS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred cceEEEeEEe-CC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 7788999998 55 566654 2 22 3488899 9999988777 47777776 789999999554
Q ss_pred EEc-CC--cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeE-
Q 011970 330 TFR-NR--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKC- 403 (474)
Q Consensus 330 S~s-D~--tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t--G~c- 403 (474)
++. ++ .|.+||+.+...+.+..+... +..+.++ ||+.|+..+... +..+++++||.+.. |+.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~~~lt~~~~~-----v~~~~~~-d~~~i~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENAIQITSGKWE-----AINIFRV-TQDSLFYSSNEF------EEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp EECTTSCEEEEEESSCSTTCEECSCSSSC-----EEEEEEE-CSSEEEEEESCG------GGCTTCBEEEEEECSSSSCC
T ss_pred EEccCCceEEEEEECCCCceEecccCceE-----EEEEEEE-eCCEEEEEEecC------CCCCceEEEEEEeCCCCCCC
Confidence 343 55 677778864335677765432 6778888 888887665300 01158899998753 421
Q ss_pred EEEec----CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EEcCC--CcEEEcc
Q 011970 404 LAKIN----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRH--GLVHVWS 473 (474)
Q Consensus 404 l~tl~----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La-Sgs~D--gtVklWd 473 (474)
...|. +|.. .+..+.|||||+.|+ +++.+ .++.+||
T Consensus 398 ~~~l~~~~~~~~~----------------------------------~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 398 KKCVTCHLRKERC----------------------------------QYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEESSTTTTTTTB----------------------------------CBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred ceeccCccCCCCC----------------------------------ceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 23332 2432 678899999999877 44443 4567775
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=214.57 Aligned_cols=257 Identities=12% Similarity=0.112 Sum_probs=183.6
Q ss_pred eEEEEeEec-cCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC-CcEEEeecC--CCe--EEEEEc-CCcEEEEE
Q 011970 161 RSTKIEYIR-RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLK--NYT--MLYSIS-DKHVQEIK 233 (474)
Q Consensus 161 ~~~~iw~i~-~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D-~tiKlWdl~--tg~--~l~tl~-~~~V~~va 233 (474)
..+.+|++. .|+.. .+....+...|..++|+ |||++|++++.+ ++|++|++. +|+ .+.++. ...+..++
T Consensus 15 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T 1ri6_A 15 QQIHVWNLNHEGALT---LTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 90 (343)
T ss_dssp TEEEEEEECTTSCEE---EEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CeEEEEEECCCCcEE---EeeeEecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEE
Confidence 589999984 45431 11111233456689998 799988888876 999999998 666 344554 34789999
Q ss_pred EcCCc-eEEEEecCCCCccEEEEec---CCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEE
Q 011970 234 ISPGI-MLLIFNRSSSHVPLKILSI---EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 307 (474)
Q Consensus 234 fSpg~-~la~~s~~s~D~tIkLWdi---~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~ 307 (474)
|+|++ .+++++ ..++.|++||+ .+++.+.++..+ ..+..++|+ |++..+++++ .|++|++||+.+ +++..
T Consensus 91 ~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 91 TDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp ECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EcCCCCEEEEEe--cCCCeEEEEECCCCccccccccccCC-CCceEEEEC-CCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 99855 455553 34678999999 455666666654 457889987 6777888876 899999999998 76543
Q ss_pred e-----ccccCCceEEEEEcCCCcEE-EEEc-CCcEEEEeCC---CcE--EEEec----cCCCCcCCCCeeEEEECCCCC
Q 011970 308 V-----SRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWNFR---GEL--VTSFE----DHLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 308 ~-----l~~h~~~v~sv~Fspdg~ll-aS~s-D~tIklWd~~---G~l--l~tl~----gH~~~~~~~~v~svafSpDg~ 371 (474)
. .......+..++|+|||+++ ++.. +++|++||++ |++ +..+. +|... ..+..++|+|||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEEECTTSS
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc---CCccceEECCCCC
Confidence 2 22234578899999999955 4555 9999999983 543 33333 21111 1256899999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCC--C--CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccC
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSIL--T--GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 447 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~--t--G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (474)
+|+.++. .|++|++||+. + .+.+..+..+. .
T Consensus 244 ~l~v~~~----------~~~~i~v~d~~~~~~~~~~~~~~~~~~-----------------------------------~ 278 (343)
T 1ri6_A 244 HLYACDR----------TASLITVFSVSEDGSVLSKEGFQPTET-----------------------------------Q 278 (343)
T ss_dssp EEEEEET----------TTTEEEEEEECTTSCCEEEEEEEECSS-----------------------------------S
T ss_pred EEEEEec----------CCCEEEEEEEcCCCCceEEeeeecCCC-----------------------------------c
Confidence 8875432 38999999997 3 35666665554 4
Q ss_pred EEEEEEcCCCCEEEEEc-CCCcEEEcc
Q 011970 448 ITSLFYDEERNEIYTGN-RHGLVHVWS 473 (474)
Q Consensus 448 V~slafSpDg~~LaSgs-~DgtVklWd 473 (474)
+.+++|+|||+.|+.++ .|++|++|+
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 66799999999988888 689999995
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=243.41 Aligned_cols=279 Identities=13% Similarity=0.060 Sum_probs=200.6
Q ss_pred cccEEEEEee--ccEEEEeeC-CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 88 RTKVIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~-dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
..+|..|+|+ |+.||.++. ||+++||++++|+.. .|..++...|++++|||| +.|++++..++++ ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~-------~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAE-------QHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSC-------CEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCc-------ceE
Confidence 4468888888 899999887 999999999766654 455545468999999999 7666654323333 345
Q ss_pred EeEec---cCCCCCccceeeeccccCceEEEEeCCCC--eEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-Cc
Q 011970 165 IEYIR---RGKPDSGFALFESESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GI 238 (474)
Q Consensus 165 iw~i~---~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~ 238 (474)
||.+. .|+.. .+.... .+...+|+ ||| .++++++.|+++ |||+++|++........ .+++||| |.
T Consensus 92 l~~~~~~~~g~~~---~l~~~~---~~~~~~~s-~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~ 162 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ---RLEAVK---PMRILSGV-DTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGD 162 (582)
T ss_dssp EEEEETTSTTCCE---ECTTSC---SBEEEEEE-ECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETT
T ss_pred EEEEeccCCCccc---cccCCC---CceeeeeC-CCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCC
Confidence 55553 34321 122211 12234665 455 567777777766 99999998765444333 8999998 55
Q ss_pred eEEEEecCC-CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC--cEEEEECCCCceEEeccccCCc
Q 011970 239 MLLIFNRSS-SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMT 315 (474)
Q Consensus 239 ~la~~s~~s-~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~--tIkIWDv~tg~~~~~l~~h~~~ 315 (474)
.||.++... ...+|++||+++|++. ++..|...+..++|+ |||..|+++..|+ +|.+||+.++++. ++.+|...
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 555443321 2267999999998865 778888889999998 7788888677888 9999999999998 88888888
Q ss_pred eEEEE--------EcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 316 PSAFI--------FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 316 v~sv~--------Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
+..++ |||||+++++++ |++++||++ |+++.++. .. |.+++|+ ||+++++++..
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~---~~-----v~~~~~s-dg~~l~~~s~~------- 302 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAPQ---GN-----HGRVVLW-RGKLVTSHTSL------- 302 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCCS---SE-----EEEEEEE-TTEEEEEEEET-------
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccCC---Cc-----eEEEEec-CCEEEEEEcCC-------
Confidence 88888 999999999998 999999999 98876433 22 6899999 99999998751
Q ss_pred cCCCCeEEEEeCCCCeEEEEe
Q 011970 387 EGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~cl~tl 407 (474)
..-..|.+||.. + .+..|
T Consensus 303 -~~p~~l~~~d~~-~-~~~~l 320 (582)
T 3o4h_A 303 -STPPRIVSLPSG-E-PLLEG 320 (582)
T ss_dssp -TEEEEEEEETTC-C-EEECC
T ss_pred -CCCCeEEEEcCC-C-ceEEE
Confidence 112447777754 3 44444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=215.94 Aligned_cols=252 Identities=10% Similarity=0.083 Sum_probs=191.3
Q ss_pred eEEEEeEeccCCCCCccceeeecccc-CceEEEEeCCCCeE-EEEecCCCcEEEeecCCCeEEEEEc-CC------cEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLK-WPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQE 231 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~-~~~~V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~tl~-~~------~V~~ 231 (474)
.++.+||+.+|+.... +...... .|..++|+ |||+. +++++.+++|.+||+.+++.+.++. .. .+..
T Consensus 11 ~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKV---ITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TEEEEEETTTTEEEEE---EECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CeEEEEECCCCcEEEE---EEcCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 5899999988886332 2222111 36689998 79965 5677788999999999999887775 22 6778
Q ss_pred EEEcCCc-eEEEEecC------C---CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC
Q 011970 232 IKISPGI-MLLIFNRS------S---SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 301 (474)
Q Consensus 232 vafSpg~-~la~~s~~------s---~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~ 301 (474)
++|+|++ .++++... . .++.|.+||+++|+.+..+.. ...+..++|+ |++.+++++ ++.|.+||+.
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~--~~~i~~~d~~ 162 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSKLYGL--GRDLHVMDPE 162 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSCEEEE--SSSEEEEETT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCEEEEe--CCeEEEEECC
Confidence 9999855 66665311 0 358999999999999988874 3457788887 667777777 7899999999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc--CC-----------------------cEEEEeCC-CcEE-EEeccCCC
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-----------------------TVAVWNFR-GELV-TSFEDHLL 354 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~-----------------------tIklWd~~-G~ll-~tl~gH~~ 354 (474)
+++++..+..+.. ...+.|+|||+.++... ++ +|.+||+. |++. ..+..|..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 163 AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9998876554331 11337899998665543 33 46899995 7764 23445543
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
. +.+++|+|||++|+.+ +++|.+||+.+++.+..+..+.
T Consensus 242 ~-----~~~~~~s~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~----------------------- 280 (337)
T 1pby_B 242 F-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPLPH----------------------- 280 (337)
T ss_dssp C-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred c-----eeeEEECCCCCEEEEe-------------CCeEEEEECCCCcCcceecCCC-----------------------
Confidence 3 5789999999999975 6899999999999999887654
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+.+++|+|||+.|++++.|++|++||.
T Consensus 281 ------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 281 ------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ------------ceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5678999999999999999999999983
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=238.32 Aligned_cols=286 Identities=12% Similarity=0.142 Sum_probs=201.6
Q ss_pred ccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 89 ~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
..|..+.|+ ...++.. .|+++++||+.+|+...... +...+.+++|||||+.|+++. + .++.+|+
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~~-----~------~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFD--TNEETASLDFSPVGDRVAYVR-----N------HNLYIAR 147 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEEC--CTTCCTTCEECTTSSEEEEEE-----T------TEEEEEE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccC--CcccccCCcCCCCCCEEEEEE-----C------CeEEEEe
Confidence 457888888 3333333 46999999999887765443 456689999999999998842 2 5899999
Q ss_pred ecc-----CCCCCccceeeec-------------cccCceEEEEeCCCCeEEEEec------------------------
Q 011970 168 IRR-----GKPDSGFALFESE-------------SLKWPGFVEFDDVNGKVLTYSA------------------------ 205 (474)
Q Consensus 168 i~~-----G~~~~~~~lf~~~-------------~~~~~~~V~Fs~~nGk~LaS~s------------------------ 205 (474)
+.. |+... +.... +..++..++|| |||+.||+++
T Consensus 148 ~~~~~~~~g~~~~---~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 148 GGKLGEGMSRAIA---VTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CBCTTSCCCCCEE---SCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred cCcccccCCCcEE---eccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 988 77522 11111 12234689998 7999999998
Q ss_pred ---------CCCcEEEeecCCCeEEEEEc----CCcEEEEEEcCCc-eEEEEecC--CCCccEEEEecCCCeEEEEEe-e
Q 011970 206 ---------QDSIYKVFDLKNYTMLYSIS----DKHVQEIKISPGI-MLLIFNRS--SSHVPLKILSIEDGTVLKVFY-H 268 (474)
Q Consensus 206 ---------~D~tiKlWdl~tg~~l~tl~----~~~V~~vafSpg~-~la~~s~~--s~D~tIkLWdi~tG~~L~tl~-~ 268 (474)
.+.+|++||++++++..... ...|..++|||++ .|++.+.+ ..+.+|++||+++|+.++.+. .
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 45789999999998755432 3569999999855 46654322 122489999999994444443 2
Q ss_pred -cCcc---eeEEEEEec--CCCeEEEEeCCCcEEEEECC-CCceEEeccccCCceEE-EEEcCCCcEEEEEc--CC----
Q 011970 269 -LLHR---NKKVDFIEQ--FNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSA-FIFLYENQLFLTFR--NR---- 334 (474)
Q Consensus 269 -h~~~---v~~V~F~~~--~~~~ll~~~~D~tIkIWDv~-tg~~~~~l~~h~~~v~s-v~Fspdg~llaS~s--D~---- 334 (474)
+... +..++|+ | ++..+++++.|++++||++. +++.++.+..|...+.. ++|+|||+.|+.++ ++
T Consensus 304 ~~~~~~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp ECSSCCCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred cCCCeECccCCceee-cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 2222 3568887 5 66666667789999999887 77888888888777876 79999998776554 44
Q ss_pred cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 335 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 335 tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.|..||+.+..++.+. |... +.+++|||||++|+..+.+ ...-+.|.+||+.+|+ +..+
T Consensus 383 ~l~~~d~~~~~~~~l~-~~~~-----~~~~~~spdg~~l~~~~~~-------~~~p~~i~l~d~~~~~-~~~~ 441 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT-PESG-----MHRTQLSPDGSAIIDIFQS-------PTVPRKVTVTNIGKGS-HTLL 441 (706)
T ss_dssp EEEEEETTCCCCEESC-CSSS-----EEEEEECTTSSEEEEEEEC-------SSCSCEEEEEESSSCE-EEEE
T ss_pred EEEEEEcCCCCceecc-CCCc-----eEEEEECCCCCEEEEEecC-------CCCCcEEEEEECCCCe-Eeec
Confidence 5666677533355555 4433 6899999999999877541 1123679999999888 4444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=208.06 Aligned_cols=249 Identities=12% Similarity=0.018 Sum_probs=187.6
Q ss_pred EeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceee
Q 011970 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFE 181 (474)
Q Consensus 103 s~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~ 181 (474)
+.+.|+++++||..+|+...... |...|.+++|+|||+.|++++ + ..+.+|++.. |++.. ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~----~-------~~i~~~d~~~~~~~~~---~~~ 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS----E-------GLLYRLSLAGDPSPEK---VDT 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE----T-------TEEEEEESSSCCSCEE---CCC
T ss_pred CCCcceeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc----C-------CeEEEEeCCCCCCceE---ecc
Confidence 45789999999999888775544 567899999999999998854 3 4789999988 87632 222
Q ss_pred eccccCceEEEEeCCCCeEEEEec--CCCcEEEeec--CCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEE
Q 011970 182 SESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDL--KNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl--~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLW 255 (474)
..+...+..++|+ |||+.|++++ .|+.++||.+ .+++ ...+. ...+..++|||++ .|+... +.|++++||
T Consensus 81 ~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~ 156 (297)
T 2ojh_A 81 GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCG--IRDQVFDIY 156 (297)
T ss_dssp TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEE--EETTEEEEE
T ss_pred ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEE--CCCCceEEE
Confidence 2112345579998 7999999998 4456777765 4555 34443 4569999999855 455332 336789999
Q ss_pred ec--CCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 256 SI--EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 256 di--~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~-tg~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
++ .+++ ...+..|...+..++|+ |++..+++++ .|+.++||++. .+..+..+..|...+..++|+|||++|+.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGV-ETRLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCC-EEECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCc-ceEcccCCCccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 85 4554 45666677788999997 6777788765 69999999987 566777778888889999999999999888
Q ss_pred c-C-----------CcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 332 R-N-----------RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 332 s-D-----------~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+ | +.|.+||++ |+. +..+.+|... +..++|+|||++|++++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT-----MNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT-----SCSCCBCTTSSEEEEEEE
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc-----cccceECCCCCEEEEEEe
Confidence 7 5 569999996 665 5556688765 578999999999999875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-24 Score=206.77 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=204.5
Q ss_pred cccEEEEEee--ccEEEEeeC-------CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 88 RTKVIEIVAA--RDIVFALAH-------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~-------dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
...+.+++++ ++.|++++. ++++.+||..+++.+.++.. . ..+.+++|+|||+.|+.++ ..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~v~~---~~~---- 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-D-LKPFGATINNTTQTLWFGN---TVN---- 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-S-SCCCSEEEETTTTEEEEEE---TTT----
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-C-CCcceEEECCCCCEEEEEe---cCC----
Confidence 3456788888 677777773 67999999999999999875 2 3478999999999776544 234
Q ss_pred eeeEEEEeEeccCCCCCccceeeec-----cccCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEc--CCcE
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESE-----SLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS--DKHV 229 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~-----~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~--~~~V 229 (474)
..+.+||+.+|+....+++-... ...++..++|+ |||+.|..++ .+++|.+||+++++.+..+. +..+
T Consensus 111 --~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 111 --SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp --TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred --CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 58899999999874432221100 01125679998 7888666554 58999999999999998886 4568
Q ss_pred EEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee----cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCC
Q 011970 230 QEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNA 303 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~----h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg 303 (474)
..++|+| |..++++ +.++.|.+||+++|+.+.++.. +.+....++|+ |+++.++++. .++.|.+||+.++
T Consensus 188 ~~~~~s~dg~~l~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 188 TGLALDSEGKRLYTT---NADGELITIDTADNKILSRKKLLDDGKEHFFINISLD-TARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CCCEEETTTTEEEEE---CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE-TTTTEEEEEESSSSEEEEEETTTC
T ss_pred ceEEECCCCCEEEEE---cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 8999998 4556655 3368999999999999998874 45567789998 6778787765 5699999999999
Q ss_pred ceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 304 ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 304 ~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+.+..+..+. ...++|+|||+ ++++.. +++|.+||.. |+.+.++..+.. ...++|+|||++|+.++.
T Consensus 264 ~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 264 NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH------PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE------EEEEEECTTSCEEEEEEE
T ss_pred cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC------CCeEEEcCCCCEEEEEEc
Confidence 9887755433 35789999998 556665 9999999995 999998876543 589999999997776655
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=210.99 Aligned_cols=261 Identities=11% Similarity=0.142 Sum_probs=175.9
Q ss_pred eEEEEeEe--ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC--CCcEEEeecCCCe--EEEEE--cCCcEEEE
Q 011970 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYT--MLYSI--SDKHVQEI 232 (474)
Q Consensus 161 ~~~~iw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~--~l~tl--~~~~V~~v 232 (474)
+.+.+|.+ .+|++.. .... .+...|..++|+ |||++++++.. |++|++||+.+|+ .+.++ ....+..|
T Consensus 16 ~~i~v~~~d~~tg~~~~-~~~~--~~~~~p~~~a~s-pdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTN-DGLL--AATQNPTYLALS-AKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CEEEEEEEETTTTEEEE-EEEE--EECSCCCCEEEC-TTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCEEEEEEcCCCCeEEE-eeee--eccCCcceEEEc-cCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 56666666 4565421 0111 234567789998 79994444432 7899999998887 34443 35678899
Q ss_pred EEcCCc-eEEEEecCCCCccEEEEecC-CCe--EEEEEeec---------CcceeEEEEEecCCCeEEEE-eCCCcEEEE
Q 011970 233 KISPGI-MLLIFNRSSSHVPLKILSIE-DGT--VLKVFYHL---------LHRNKKVDFIEQFNEKLLVK-QENENLQIL 298 (474)
Q Consensus 233 afSpg~-~la~~s~~s~D~tIkLWdi~-tG~--~L~tl~~h---------~~~v~~V~F~~~~~~~ll~~-~~D~tIkIW 298 (474)
+|||++ +|++++ ..+++|++|++. +|+ .+..+... ...+..++|+ |++. ++++ ..+++|++|
T Consensus 92 a~spdg~~l~~~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~-l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 92 AVDEARQLVYSAN--YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNR-LAVIDLGSDKVYVY 167 (347)
T ss_dssp EEETTTTEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSC-EEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEe--CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCc-EEEEeCCCCEEEEE
Confidence 999854 566654 346899999995 443 34444321 1246789997 5666 6665 578999999
Q ss_pred ECC-CCceEEe--cc-ccCCceEEEEEcCCCcEEEE-Ec-CCcEEEEeCC---CcE--EEEeccCCCC-cCCCCeeEEEE
Q 011970 299 DVR-NAELMEV--SR-TEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR---GEL--VTSFEDHLLW-HPDCNTNNIYI 366 (474)
Q Consensus 299 Dv~-tg~~~~~--l~-~h~~~v~sv~Fspdg~llaS-~s-D~tIklWd~~---G~l--l~tl~gH~~~-~~~~~v~svaf 366 (474)
|+. +|++... .. .....+..++|+|||++|+. .. +++|.+|+++ |++ +..+..+..- .....+..++|
T Consensus 168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence 999 6765432 12 22346888999999995544 55 8999999984 553 3344433210 00012578999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CC--eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccc
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 443 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG--~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (474)
+|||++|+..+. .+++|.+||+. +| +.+.++..|..
T Consensus 248 spdG~~l~v~~~----------~~~~v~v~~~~~~g~~~~~~~~~~~~~------------------------------- 286 (347)
T 3hfq_A 248 SHDGHFLYVSNR----------GYNTLAVFAVTADGHLTLIQQISTEGD------------------------------- 286 (347)
T ss_dssp CTTSCEEEEEEE----------TTTEEEEEEECGGGCEEEEEEEECSSS-------------------------------
T ss_pred CCCCCEEEEEeC----------CCCEEEEEEECCCCcEEEeEEEecCCC-------------------------------
Confidence 999998844332 28999999996 33 66777776653
Q ss_pred cccCEEEEEEcCCCCEEEEEcCC-CcEEEcc
Q 011970 444 ALEDITSLFYDEERNEIYTGNRH-GLVHVWS 473 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~D-gtVklWd 473 (474)
.+.+++|||||+.||+++.+ ++|.+|+
T Consensus 287 ---~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 287 ---FPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp ---CCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---CcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 56789999999999888765 8999994
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-24 Score=209.18 Aligned_cols=269 Identities=11% Similarity=0.125 Sum_probs=186.7
Q ss_pred CCCeEEeeecc--ccceee-EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee-
Q 011970 106 HSGVCAAFSRE--TNRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE- 181 (474)
Q Consensus 106 ~dgtiklW~~~--tg~~l~-~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~- 181 (474)
.++.+.+|.++ +|+... .... +......++|+|||+ |++++..+ .+ ..+.+|++..|++.. +-.
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~-~~~~p~~~a~spdg~-l~~~~~~~-~~------~~v~~~~~~~g~~~~---~~~~ 81 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLA-ATQNPTYLALSAKDC-LYSVDKED-DE------GGIAAWQIDGQTAHK---LNTV 81 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEE-ECSCCCCEEECTTCE-EEEEEEET-TE------EEEEEEEEETTEEEE---EEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeee-ccCCcceEEEccCCe-EEEEEecC-CC------ceEEEEEecCCcEEE---eeee
Confidence 45667777654 566533 2222 335577899999999 76665432 34 689999997776411 111
Q ss_pred eccccCceEEEEeCCCCeEEEEec-CCCcEEEeecC-CCe--EEEEEcC-----------CcEEEEEEcCCceEEEEecC
Q 011970 182 SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK-NYT--MLYSISD-----------KHVQEIKISPGIMLLIFNRS 246 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~-tg~--~l~tl~~-----------~~V~~vafSpg~~la~~s~~ 246 (474)
..+...|..|+|+ |||++|++++ .|++|++||+. +|+ .+..+.. ..+..++|+|++.++++.
T Consensus 82 ~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~-- 158 (347)
T 3hfq_A 82 VAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID-- 158 (347)
T ss_dssp EEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE--
T ss_pred ecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe--
Confidence 1134567789998 7999888777 78999999995 444 3444421 248899999966666553
Q ss_pred CCCccEEEEecC-CCeEEE--EEeec-CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--CceE--EeccccC----
Q 011970 247 SSHVPLKILSIE-DGTVLK--VFYHL-LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AELM--EVSRTEF---- 313 (474)
Q Consensus 247 s~D~tIkLWdi~-tG~~L~--tl~~h-~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t--g~~~--~~l~~h~---- 313 (474)
..+..|++|++. +|++.. .+..+ ......++|+ |++.++++. ..+++|++||+.. +++. .......
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 446789999998 776543 23322 2356779997 677767775 5789999999874 6643 2222221
Q ss_pred --CceEEEEEcCCCcEE-EEEc-CCcEEEEeCC--C--cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 314 --MTPSAFIFLYENQLF-LTFR-NRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 314 --~~v~sv~Fspdg~ll-aS~s-D~tIklWd~~--G--~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
..+..++|+|||++| ++.. +++|.+||++ | +.+.++..|... +..++|+|||++|+.++.
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~------- 305 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-----PRDFDLDPTEAFVVVVNQ------- 305 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-----CCEEEECTTSSEEEEEET-------
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-----cCeEEECCCCCEEEEEEc-------
Confidence 458899999999966 5666 8999999985 5 456677776554 478999999999988764
Q ss_pred ccCCCCeEEEE--eCCCCeEEE
Q 011970 386 MEGSAGSINVS--SILTGKCLA 405 (474)
Q Consensus 386 ~~s~DgtIklW--di~tG~cl~ 405 (474)
.+++|.+| |..+|+...
T Consensus 306 ---~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 306 ---NTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ---TTTEEEEEEECTTTCCEEE
T ss_pred ---CCCcEEEEEEeCCCCeEEe
Confidence 26899999 667888653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-25 Score=211.10 Aligned_cols=279 Identities=6% Similarity=-0.068 Sum_probs=194.6
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+.++++++.+++|++||..+|+.+.++.......+.+++|+|||+.|+.++ ..+ .++.+|++.+|+....+
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~------~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC------CcEEEEeCCCCcEEEEE
Confidence 788999999999999999999999999863322578999999999776543 244 58999999888863321
Q ss_pred ceeee--ccccCceEEEEeCCCCeEEEEecCC------------CcEEEeecCCCe---EEEEEc-CCcEEEEEEcCCce
Q 011970 178 ALFES--ESLKWPGFVEFDDVNGKVLTYSAQD------------SIYKVFDLKNYT---MLYSIS-DKHVQEIKISPGIM 239 (474)
Q Consensus 178 ~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D------------~tiKlWdl~tg~---~l~tl~-~~~V~~vafSpg~~ 239 (474)
.+-.. .....+..++|+ |||++|+.++.| ++|.+||+++++ .+..+. ...+.+++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 11000 001235689998 799999988865 999999999854 334443 34688999999766
Q ss_pred EEEEecCCCCccEEEEecCCCeEEEEEeecCc------------------------ceeEEEEEecCCCeEEEE-eCCCc
Q 011970 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH------------------------RNKKVDFIEQFNEKLLVK-QENEN 294 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~------------------------~v~~V~F~~~~~~~ll~~-~~D~t 294 (474)
+++. + ..|++||+++|+++.++..+.. ....++|.+ ++...... .....
T Consensus 161 l~~~---~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 161 LYVA---G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK-DDKQDPATADLLYG 234 (349)
T ss_dssp EEEE---S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEE
T ss_pred EEEc---c--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC-CCcCCcccccccee
Confidence 5553 2 3499999999999998874310 123344431 11000000 00111
Q ss_pred EEEEECCCCceEEe-ccccCCceEEEEEcC-CCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC
Q 011970 295 LQILDVRNAELMEV-SRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 295 IkIWDv~tg~~~~~-l~~h~~~v~sv~Fsp-dg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~ 371 (474)
+-.+|..+++.... +..+...+..++|+| ||++++++ +++|.+||+. |+++.++..+.. +..++|+|||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~ 307 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT------YYCVAFDKKGD 307 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECSSSS
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC------ccceEECCCCC
Confidence 12244444443211 223556788999999 99999988 8999999995 999888874432 46899999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+|++++. +++|++||+.+++.+.+++.+
T Consensus 308 ~l~~~~~-----------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 308 KLYLGGT-----------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CEEEESB-----------SSEEEEEETTTTEEEEEEECS
T ss_pred EEEEecC-----------CCeEEEEeccccceeeeeecC
Confidence 8888654 899999999999999998765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=215.13 Aligned_cols=320 Identities=10% Similarity=0.043 Sum_probs=204.7
Q ss_pred eeeccccceeeEeecCCCceEEE-----EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc
Q 011970 112 AFSRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (474)
Q Consensus 112 lW~~~tg~~l~~l~g~~~~~i~s-----v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~ 186 (474)
.++..+|..+..|.. +.....+ .+|||||+.|+.++... .. ..+.+|++..|+... +... +..
T Consensus 14 ~~~~~~g~~~~~lt~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~------~~l~~~d~~~g~~~~---lt~~-~~~ 81 (388)
T 3pe7_A 14 YQDASTGAQVTRLTP-PDVTCHRNYFYQKCFTRDGSKLLFGGAFD-GP------WNYYLLDLNTQVATQ---LTEG-RGD 81 (388)
T ss_dssp EECTTTCCEEEECSC-TTSCEECCCTTSCCBCTTSCEEEEEECTT-SS------CEEEEEETTTCEEEE---CCCS-SCB
T ss_pred EecCCCCcceEEecC-CcccccchhhcCccCCCCCCEEEEEEcCC-CC------ceEEEEeCCCCceEE---eeeC-CCC
Confidence 456778999999986 4445666 88999999999987421 11 357778888887622 2221 222
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE--EEcCCcEEEEE--EcCCceEEEEec-----------------
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIK--ISPGIMLLIFNR----------------- 245 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~--tl~~~~V~~va--fSpg~~la~~s~----------------- 245 (474)
.+..++|| |||+.|++++.|+++.+||+.+++... .++...+.... ++|++.++++..
T Consensus 82 ~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 82 NTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred CccceEEc-CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 22256898 799999999999999999999998654 44455554443 477555544211
Q ss_pred ---CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC------CCcEEEEECCCCceEEeccccC-Cc
Q 011970 246 ---SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNAELMEVSRTEF-MT 315 (474)
Q Consensus 246 ---~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~------D~tIkIWDv~tg~~~~~l~~h~-~~ 315 (474)
.+.+..|.+||+++|+..... .+...+..++|+|.++.+|+..+. +..|.++|+.+++......++. ..
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES 239 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEE
T ss_pred hhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcc
Confidence 233468999999999865544 445678899998327778877654 3478888887776655544332 35
Q ss_pred eEEEEEcCCCcEEEEEc--CC----cEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 316 PSAFIFLYENQLFLTFR--NR----TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s--D~----tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
+..++|||||+.|+..+ ++ +|.+||+. |+ .+..+.++..... ....++|||||+.|+..... .....
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~--~~~~~ 315 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS--NYDGSLMVGDGSDAPVDVQD--DSGYK 315 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE--CTTSSEEEEEECCC-------------
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee--cCCCCeEccCCCcceeEeee--ccccc
Confidence 77889999999776544 22 39999995 76 4555555221100 01234799999998854210 00000
Q ss_pred cCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc-C
Q 011970 387 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-R 465 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~ 465 (474)
.+.+..|.+||+.+|+. ..|..|........ ......+.+++|||||+.|+.++ .
T Consensus 316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQ-HRVARHDTSWKVFE-----------------------GDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp -CCCCEEEEEETTTTEE-EEEEECCCCCCCBT-----------------------TBSSTTCCCCEECTTSSEEEEEECT
T ss_pred cCCCCEEEEEeccCCce-EEeccccCcccccc-----------------------cccccCCCCccCCCCCCEEEEEecC
Confidence 13378999999988775 55666652000000 00001366789999999888665 6
Q ss_pred CCcEEEcc
Q 011970 466 HGLVHVWS 473 (474)
Q Consensus 466 DgtVklWd 473 (474)
+|..+||.
T Consensus 372 ~g~~~l~~ 379 (388)
T 3pe7_A 372 HGKPALYL 379 (388)
T ss_dssp TSSCEEEE
T ss_pred CCceeEEE
Confidence 88888884
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=247.52 Aligned_cols=276 Identities=10% Similarity=0.116 Sum_probs=197.3
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccc--cCceEEEEeCCCCeEEEEecC----
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQ---- 206 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~~nGk~LaS~s~---- 206 (474)
.++.|+|||+.+++ + .| .++++|++..|++. .++..... ..+..++|| |||+.||+++.
T Consensus 19 ~~~~~s~dg~~~~~-~----~d------~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-S----AD------NNIVLYNIETGQSY---TILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEE-C----TT------SCEEEEESSSCCEE---EEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEE-c----CC------CCEEEEEcCCCcEE---EEEccccccccceeeEEEC-CCCCeEEEEecCcee
Confidence 47899999975544 2 34 58999999999862 23433111 125689998 79999999886
Q ss_pred -----CCcEEEeecCCCeEE--EEEcCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEE-eecCcce----
Q 011970 207 -----DSIYKVFDLKNYTML--YSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLHRN---- 273 (474)
Q Consensus 207 -----D~tiKlWdl~tg~~l--~tl~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h~~~v---- 273 (474)
|++|++||+++|+++ ..+ ...+..++|||++ .||.. . |++|++||+.+|++.+.. .++...+
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~-~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYV-Y---QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEE-E---TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred EEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEE-E---CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 799999999999874 233 2568899999855 55544 2 579999999999886533 2332222
Q ss_pred -------------eEEEEEecCCCeEEEEeCCC----------------------------------cEEEEECCCCceE
Q 011970 274 -------------KKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELM 306 (474)
Q Consensus 274 -------------~~V~F~~~~~~~ll~~~~D~----------------------------------tIkIWDv~tg~~~ 306 (474)
..++|+ |+|.+|+.++.|. +|++||+.+++++
T Consensus 159 ~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 489997 7888898877542 8899999999863
Q ss_pred ---Ee-----ccccCCceEEEEEcCCCcEEEEEc-C----CcEEEEe----CC-CcEEEEe----ccCCCCcCCCCeeEE
Q 011970 307 ---EV-----SRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWN----FR-GELVTSF----EDHLLWHPDCNTNNI 364 (474)
Q Consensus 307 ---~~-----l~~h~~~v~sv~Fspdg~llaS~s-D----~tIklWd----~~-G~ll~tl----~gH~~~~~~~~v~sv 364 (474)
++ +.+|...+.+++|||||+++++.. . ..|.+|| .. |++...+ ++|..|+.......+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc
Confidence 32 346888899999999999888854 2 2488899 84 7777666 588887410000178
Q ss_pred EECCCCCEEEEE-ecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccc
Q 011970 365 YITSDQDLIISY-CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 443 (474)
Q Consensus 365 afSpDg~~LaS~-s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (474)
+|||||+.|+.. +. .+....|.+||+.+|+ ...|..+..
T Consensus 318 ~~spdg~~l~~~~~~--------~~g~~~l~~~~~~~~~-~~~lt~~~~------------------------------- 357 (719)
T 1z68_A 318 VFSYDAISYYKIFSD--------KDGYKHIHYIKDTVEN-AIQITSGKW------------------------------- 357 (719)
T ss_dssp EECTTSSCEEEEEEC--------TTSCEEEEEESSCSTT-CEECSCSSS-------------------------------
T ss_pred EECCCCCeEEEEEEc--------cCCceEEEEEECCCCc-eEecccCce-------------------------------
Confidence 999999976542 21 1124478888987777 566766553
Q ss_pred cccCEEEEEEcCCCCEEEEEcCC-----CcEEEcc
Q 011970 444 ALEDITSLFYDEERNEIYTGNRH-----GLVHVWS 473 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~D-----gtVklWd 473 (474)
.|..+.|+ ||+.|+..+.+ ++++||.
T Consensus 358 ---~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 358 ---EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ---CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ---EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 67888888 88887766654 8899996
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=208.58 Aligned_cols=229 Identities=7% Similarity=0.029 Sum_probs=177.8
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-C--cEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K--HVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~--~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
++|+ ++++++++++.|++|++||+++++++.++.. . .+..++|+|++ .++++. ..++.|.+||+++|+.+.++
T Consensus 5 ~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 5 PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN--NHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEE
T ss_pred cccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe--CCCCcEEEEeCCCCcEEEEE
Confidence 5676 7999999999999999999999999888863 3 58899999865 455553 44689999999999999888
Q ss_pred eecC------cceeEEEEEecCCCeEEEEeCC------------CcEEEEECCCCceE---EeccccCCceEEEEEcCCC
Q 011970 267 YHLL------HRNKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNAELM---EVSRTEFMTPSAFIFLYEN 325 (474)
Q Consensus 267 ~~h~------~~v~~V~F~~~~~~~ll~~~~D------------~tIkIWDv~tg~~~---~~l~~h~~~v~sv~Fspdg 325 (474)
..+. ..+..++|+ |++.++++++.+ ++|.+||+.+++.. .....+ ..+.+++|+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg 159 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDG 159 (349)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTS
T ss_pred EcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCC
Confidence 7321 226788987 678888887754 99999999996543 333333 368889999999
Q ss_pred cEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcC-----------------------------------------------
Q 011970 326 QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHP----------------------------------------------- 357 (474)
Q Consensus 326 ~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~----------------------------------------------- 357 (474)
++++ ++ +.|.+||.. |+++.++..+....+
T Consensus 160 ~l~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 160 SLYV-AG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp CEEE-ES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred cEEE-cc-CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 9555 43 349999994 999888765420000
Q ss_pred ----------------CCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccc
Q 011970 358 ----------------DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 420 (474)
Q Consensus 358 ----------------~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~ 420 (474)
...+.+++|+| ||++|+.+ ++.|.+||+.+|+.++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~--------- 295 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------------LNRLAKYDLKQRKLIKAANLDH--------- 295 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------------ESEEEEEETTTTEEEEEEECSS---------
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-------------cCeEEEEECccCeEEEEEcCCC---------
Confidence 00235677889 99999875 5799999999999999886543
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 421 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+++++|+|||+.|++++.+++|++||.
T Consensus 296 --------------------------~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 296 --------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp --------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred --------------------------CccceEECCCCCEEEEecCCCeEEEEec
Confidence 4668999999999999999999999983
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=199.81 Aligned_cols=257 Identities=11% Similarity=0.147 Sum_probs=177.7
Q ss_pred eEEEEeEe--ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC----CcEEEeecCC--CeE--EEEEc--CCc
Q 011970 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN--YTM--LYSIS--DKH 228 (474)
Q Consensus 161 ~~~~iw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D----~tiKlWdl~t--g~~--l~tl~--~~~ 228 (474)
..+.+|.+ .+|++.. +... +...|..++|+ |||++|++++.| ++|.+|++.. |++ +.++. ...
T Consensus 27 ~~i~~~~~d~~~g~~~~---~~~~-~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGESLP---LSDA-EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp CEEEEEEEETTTCCEEE---EEEE-ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCEEEEEEeCCCCCEEE---eecc-cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 57777766 5676522 1111 34567789998 799999988886 7999999865 653 34443 356
Q ss_pred EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE----e--e--------cCcceeEEEEEecCCCeEEEEe-CCC
Q 011970 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF----Y--H--------LLHRNKKVDFIEQFNEKLLVKQ-ENE 293 (474)
Q Consensus 229 V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl----~--~--------h~~~v~~V~F~~~~~~~ll~~~-~D~ 293 (474)
...+++ +|..|++++ ..+++|.+|++.++..+..+ . + +..++..++|+ |++.+++++. .++
T Consensus 102 p~~~~~-dg~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~ 177 (361)
T 3scy_A 102 PCYLTT-NGKNIVTAN--YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGTD 177 (361)
T ss_dssp EEEEEE-CSSEEEEEE--TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTTT
T ss_pred cEEEEE-CCCEEEEEE--CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCCC
Confidence 788888 777777764 34689999999754433222 1 1 12234679987 6777787765 689
Q ss_pred cEEEEECCCCc-------e------EEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-CcE--EEEeccCCCC
Q 011970 294 NLQILDVRNAE-------L------MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GEL--VTSFEDHLLW 355 (474)
Q Consensus 294 tIkIWDv~tg~-------~------~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~l--l~tl~gH~~~ 355 (474)
+|++|++.... + ......+...+..++|+|||++++.++ +++|.+||++ |++ +.++..+...
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence 99999887543 2 122233455788999999999665554 8999999994 765 3444332211
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCC-CCeEEEEeCC--CCe--EEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS-AGSINVSSIL--TGK--CLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~-DgtIklWdi~--tG~--cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
. .....++|||||++|+.++. . +++|.||++. +|+ .+..+.. ..
T Consensus 258 ~--~~~~~i~~spdg~~l~v~~~----------~~~~~i~v~~~~~~~g~~~~~~~~~~-g~------------------ 306 (361)
T 3scy_A 258 A--QGSGDIHLSPDGKYLYASNR----------LKADGVAIFKVDETNGTLTKVGYQLT-GI------------------ 306 (361)
T ss_dssp C--CCEEEEEECTTSSEEEEEEC----------SSSCEEEEEEECTTTCCEEEEEEEEC-SS------------------
T ss_pred C--CCcccEEECCCCCEEEEECC----------CCCCEEEEEEEcCCCCcEEEeeEecC-CC------------------
Confidence 0 11468999999999976654 2 5899999984 566 4555544 21
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEc-CCCcEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~DgtVklWd 473 (474)
.+..++|||||++|+.++ .+++|++|+
T Consensus 307 ----------------~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 307 ----------------HPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp ----------------CCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred ----------------CCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 567899999999998887 679999974
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-22 Score=194.77 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=181.5
Q ss_pred CCCeEEeeec--cccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc--CCCCCccceee
Q 011970 106 HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFE 181 (474)
Q Consensus 106 ~dgtiklW~~--~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~--G~~~~~~~lf~ 181 (474)
.++.+.+|.+ ++|+....... +......++|+|||+.|++++.++..+ ..+.+|++.. |++. .+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~---~~~~ 94 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLH---LLNT 94 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEE---EEEE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEE---EeeE
Confidence 4678999876 55765433332 445678899999999999988543234 5888898854 5541 1111
Q ss_pred ec-cccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEE------c----------CCcEEEEEEcCCce-EEE
Q 011970 182 SE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSI------S----------DKHVQEIKISPGIM-LLI 242 (474)
Q Consensus 182 ~~-~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl------~----------~~~V~~vafSpg~~-la~ 242 (474)
.. ....|..++| ||++|+.++ .|++|.+|++.+...+..+ . ...+.+++|||++. +++
T Consensus 95 ~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 95 QKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred eccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 11 2234556777 567665554 6899999999753322111 1 12468899999664 655
Q ss_pred EecCCCCccEEEEecCCCe-------EE-----EEEe-ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEE-
Q 011970 243 FNRSSSHVPLKILSIEDGT-------VL-----KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME- 307 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~-------~L-----~tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~- 307 (474)
+. ..+..|++|++.... +. ..+. .+......++|+ |++..+++.. .+++|++||+.++++..
T Consensus 172 ~~--~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 172 DD--LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EE--TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred Ee--CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 53 346789999887543 21 1222 233456789997 6777787776 69999999999887632
Q ss_pred ----eccccCCceEEEEEcCCCcEEEEEc-C--CcEEEEeCC---Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 308 ----VSRTEFMTPSAFIFLYENQLFLTFR-N--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 308 ----~l~~h~~~v~sv~Fspdg~llaS~s-D--~tIklWd~~---G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
....+...+..++|+|||++|+.+. + ++|++|+++ |+ .+..+.. ... +..++|+|||++|+.
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~-----~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH-----PRNFIITPNGKYLLV 322 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC-----CCEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC-----CceEEECCCCCEEEE
Confidence 2344566788999999999886654 5 799999983 66 4555554 222 578999999999998
Q ss_pred EecCCCccccccCCCCeEEEE--eCCCCeEEEE
Q 011970 376 YCKAEPEDQWMEGSAGSINVS--SILTGKCLAK 406 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklW--di~tG~cl~t 406 (474)
++. .+++|.+| |..+|++...
T Consensus 323 ~~~----------~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 323 ACR----------DTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EET----------TTTEEEEEEECTTTCCEEEC
T ss_pred EEC----------CCCCEEEEEEECCCCcEeec
Confidence 764 37899995 6668887654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=208.12 Aligned_cols=316 Identities=9% Similarity=0.036 Sum_probs=200.6
Q ss_pred eeeccccceeeEeecCCCce-----EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc
Q 011970 112 AFSRETNRRICFLNVSPDEV-----IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (474)
Q Consensus 112 lW~~~tg~~l~~l~g~~~~~-----i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~ 186 (474)
..|..+|+.+..|... ... +.+++|||||+.|+.++..+. + ..+.+|++..|+.. .+... ...
T Consensus 14 ~~d~~~g~~~~~l~~~-~~~~~~~~~~~~~~SpdG~~l~~~~~~~g-~------~~l~~~d~~~~~~~---~l~~~-~~~ 81 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPT-DIICHRNYFYQKCFTQDGKKLLFAGDFDG-N------RNYYLLNLETQQAV---QLTEG-KGD 81 (396)
T ss_dssp EECTTTCCEEEECSCT-TSCEECCCTTSCCBCTTSCEEEEEECTTS-S------CEEEEEETTTTEEE---ECCCS-SCB
T ss_pred eecCCCCcceEEEecC-CCCccceeeecCcCCCCCCEEEEEEecCC-C------ceEEEEECCCCcEE---EeecC-CCC
Confidence 4477889988888753 222 678899999999988764322 2 35677888777752 12221 111
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEE-------------------EEEcCCc-eEEEEe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQE-------------------IKISPGI-MLLIFN 244 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~-------------------vafSpg~-~la~~s 244 (474)
....+.|| |||+.|++.+.+++|.+||+.+++..... +..+... ++++|++ .++...
T Consensus 82 ~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 82 NTFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp CTTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ccccceEC-CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence 11136788 79999999999999999999998865443 3333333 3445533 222211
Q ss_pred --cCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC------CcEEEEECCCCceEEecccc-CCc
Q 011970 245 --RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTE-FMT 315 (474)
Q Consensus 245 --~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D------~tIkIWDv~tg~~~~~l~~h-~~~ 315 (474)
....+..|.+||+.+|++...+. +...+..+.|++.++.+|+..+.+ ..|.+||+.+++......++ ...
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES 239 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred eccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence 01345689999999998766554 456788999984366777776533 46889999887766554432 336
Q ss_pred eEEEEEcCCCcEEEEEc-C-----CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCC----c-
Q 011970 316 PSAFIFLYENQLFLTFR-N-----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEP----E- 382 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D-----~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~----~- 382 (474)
+..++|+|||+.|+..+ + ++|.+||+. |+..... .... .. ++|+| ||++|+.++...| +
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS------EE-EEEECSSSSEEEEEECCC-------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC------CC-CCccCCCCceEEEecCCcceeeccc
Confidence 78899999999877665 3 459999995 7654322 2211 23 88999 9999987542100 0
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 011970 383 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 462 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS 462 (474)
.......+..|.+||+.+|+. ..|..|....... ..+....+.+++|+|||+.|+.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVL-----------------------DGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBC-CEEEECCCCCCCB-----------------------TTBSSTTCCCCEECTTSSEEEE
T ss_pred cccccCCCCcEEEEecccCce-EEccCCCCccccc-----------------------cccccCCCCCceEccCCCeEEE
Confidence 000112368999999988875 4565554200000 0000002456789999999887
Q ss_pred Ec-CCCcEEEcc
Q 011970 463 GN-RHGLVHVWS 473 (474)
Q Consensus 463 gs-~DgtVklWd 473 (474)
++ .++...||.
T Consensus 368 ~s~~~~~~~l~~ 379 (396)
T 3c5m_A 368 TSDFEGVPAIYI 379 (396)
T ss_dssp EECTTSSCEEEE
T ss_pred EecCCCCceEEE
Confidence 76 467777773
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=226.94 Aligned_cols=281 Identities=10% Similarity=0.050 Sum_probs=186.6
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCc----eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~----~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
+++|++. ||+|++||..||++...+.++... ...+++|||||+.|++++.+...- ..=.-..+.|||+.+|++
T Consensus 28 g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~-r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 28 HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW-RHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS-SSCEEEEEEEEETTTTEE
T ss_pred CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE-EEccceEEEEEECCCCcE
Confidence 7888886 999999999999998888874322 124578999999999877543211 000114567999999986
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-EcC--CcE-----------------EEEE
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD--KHV-----------------QEIK 233 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-l~~--~~V-----------------~~va 233 (474)
.. |..+ ...+..++|| |||+.||+++ |+.|.+||+.+|++... ..+ ..+ .+++
T Consensus 105 ~~---l~~~--~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 105 IT---EERI--PNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp CC---SSCC--CTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred EE---cccC--CCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 32 3322 3456689998 7999999985 78999999999886542 211 123 2489
Q ss_pred EcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---C---ceE
Q 011970 234 ISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---A---ELM 306 (474)
Q Consensus 234 fSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t---g---~~~ 306 (474)
|||++. ||..+.+ +..+++|++...... ..+......+.|. ..|+. ..+.+|+|||+.+ + ++.
T Consensus 178 wSpDg~~la~~~~d--~~~v~~~~~~~~~~~---~~~~~~~~~~~yp-~~G~~----~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 178 WSPNGTFLAYAQFN--DTEVPLIEYSFYSDE---SLQYPKTVRVPYP-KAGAV----NPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp ECTTSSEEEEEEEE--CTTCCEEEEEECCST---TCSSCEEEEEECC-BTTSC----CCEEEEEEEETTSCCSSSCCCEE
T ss_pred ECCCCCEEEEEEEc--ccCCceEEEEeecCC---CCCCCcceeecCC-CCcCc----CCeeEEEEEECCCCCCCCcceEE
Confidence 998554 5554322 334888876321100 0133455666663 22321 1223789999999 8 555
Q ss_pred Eecc-----ccCCceEEEEEcCCCcEEEEEc-----CCcEEEEeCC-Cc----EEE--Ee--ccCCCCcCCCCeeEEEEC
Q 011970 307 EVSR-----TEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GE----LVT--SF--EDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 307 ~~l~-----~h~~~v~sv~Fspdg~llaS~s-----D~tIklWd~~-G~----ll~--tl--~gH~~~~~~~~v~svafS 367 (474)
++.. +|...+..++|||||++++... +.+|.+||++ |+ |.. ++ ++|..|+......+++||
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 5533 4788899999999999777653 2379999994 87 543 33 678888521002378999
Q ss_pred CCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 368 SDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 368 pDg~~La-S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|||+.|+ ..+. .+....|.+||+.+|++.+.
T Consensus 328 pDG~~l~~~~s~--------~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 328 LDGNSFYKIISN--------EEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp TTSSEEEEEEEC--------TTSCEEEEEEETTCSSCEES
T ss_pred CCCCEEEEEEEc--------CCCceEEEEEECCCCceEec
Confidence 9999888 6654 12246799999877776543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-23 Score=203.94 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=170.6
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEc---CCcEEEEEEcCCce--EEEEec------CC-----CC
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKISPGIM--LLIFNR------SS-----SH 249 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~---~~~V~~vafSpg~~--la~~s~------~s-----~D 249 (474)
.|.+++|+ |||++|++++.+ +|.+||+. +|++..... ...+..++|||++. ++..+. .+ .+
T Consensus 41 ~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 46689998 799999988888 99999997 898765432 13355689998665 232211 01 47
Q ss_pred ccEEEEecC-CCeEEEEEee----cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCceEE--ecc--ccCCceEE
Q 011970 250 VPLKILSIE-DGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELME--VSR--TEFMTPSA 318 (474)
Q Consensus 250 ~tIkLWdi~-tG~~L~tl~~----h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~-tg~~~~--~l~--~h~~~v~s 318 (474)
+++++|++. +|++..++.. +...+..++|+ |++.+++++. .+++|++||+. +|++.. .+. .|...+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 889999997 6887766552 45678899997 6777777765 57899999999 888643 222 24567999
Q ss_pred EEEcCCCcEEEEEc--CCcEEEEeCC---CcEE---EEec-------cCCCCc-CCCCeeEEE-ECCCCCEEEEEecCCC
Q 011970 319 FIFLYENQLFLTFR--NRTVAVWNFR---GELV---TSFE-------DHLLWH-PDCNTNNIY-ITSDQDLIISYCKAEP 381 (474)
Q Consensus 319 v~Fspdg~llaS~s--D~tIklWd~~---G~ll---~tl~-------gH~~~~-~~~~v~sva-fSpDg~~LaS~s~~~~ 381 (474)
++|+|||++|+.++ +++|.+|+++ |++. +++. +|.... ..-.+..++ |||||++|++++.
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~--- 274 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR--- 274 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE---
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC---
Confidence 99999999887665 7899999863 7763 2222 222100 000157899 9999999887654
Q ss_pred ccccccCCC----CeEEEEeCC-CCeEEE---EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 382 EDQWMEGSA----GSINVSSIL-TGKCLA---KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 382 ~~~~~~s~D----gtIklWdi~-tG~cl~---tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
+.+ ++|++|++. +|++.. .+..+.. .+.+++|
T Consensus 275 ------~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~----------------------------------~~~~~a~ 314 (365)
T 1jof_A 275 ------ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS----------------------------------GGHSNAV 314 (365)
T ss_dssp ------ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC----------------------------------CTTCCCE
T ss_pred ------CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC----------------------------------Cccccee
Confidence 112 399999995 788654 2333432 3456899
Q ss_pred cC---CCCEEEEEcCC-CcEEEcc
Q 011970 454 DE---ERNEIYTGNRH-GLVHVWS 473 (474)
Q Consensus 454 Sp---Dg~~LaSgs~D-gtVklWd 473 (474)
|| ||++||+++.+ ++|+||+
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEE
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEE
Confidence 99 89999999875 9999996
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-21 Score=185.30 Aligned_cols=237 Identities=11% Similarity=0.217 Sum_probs=185.3
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--------CcEEEEEEc-CCceEEEEecCCCCccEEE
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--------~~V~~vafS-pg~~la~~s~~s~D~tIkL 254 (474)
++..|..|+|+ ++|+++++.+.++.|++||.+ ++.+..+.. ..+..|+|+ +++.+.++.. +.+..|++
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~-~~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQI 104 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEE
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-CCCCEEEE
Confidence 46678899998 799999998999999999976 777776642 468999995 7776666642 12578999
Q ss_pred EecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEE
Q 011970 255 LSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 255 Wdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~ 331 (474)
|| .+|+.+.++. .+......++|. +++..+++...++.|.+||. +++.+..+. ++...+..++|+|+|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 7899998885 334567889986 45544444457899999995 566665543 566789999999999999998
Q ss_pred c-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEecC
Q 011970 332 R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINA 409 (474)
Q Consensus 332 s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl~g 409 (474)
+ ++.|++||.+|+.+.++..+... .....|+|+|||+++++.+. ++ .|.+|| .+|+.+.++..
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~-----------~~~~i~~~~-~~g~~~~~~~~ 246 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNH-----------NNFNLTIFT-QDGQLISALES 246 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECS-----------SSCEEEEEC-TTSCEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCC-----------CCEEEEEEC-CCCCEEEEEcc
Confidence 8 99999999999999888654311 11579999999999998754 55 999999 58999999977
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+... ..+.+++|+|||+.+++ +.|++|++|+.
T Consensus 247 ~~~~--------------------------------~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 247 KVKH--------------------------------AQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SSCC--------------------------------SCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred cCCC--------------------------------CcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 6520 15789999999998877 57999999973
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-21 Score=194.86 Aligned_cols=273 Identities=10% Similarity=0.084 Sum_probs=194.0
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeec------CCCccceeeeEEEEeEeccCCCCCccce
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYA------SDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~------s~d~s~Lk~~~~~iw~i~~G~~~~~~~l 179 (474)
.|+++.+||..+|+.+.++.. +... .++|||||+.|..++.+. ..+ .++.+||+.+++..+.+++
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~------~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRS------DVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEE------EEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCC------CEEEEEECcCCcEEEEEEc
Confidence 478999999999999999986 3344 999999999998876431 123 5899999988887554433
Q ss_pred eee--ccccCceEEEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCc--eEEEEecCCCCccE
Q 011970 180 FES--ESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKISPGI--MLLIFNRSSSHVPL 252 (474)
Q Consensus 180 f~~--~~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg~--~la~~s~~s~D~tI 252 (474)
-.. ....+|..++|| |||++|..+.. +++|.+||+++++.+.+ +.....+.+.+.|.+ .+++. +.|+.+
T Consensus 100 ~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~---~~dg~~ 175 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI---CGDGGL 175 (361)
T ss_dssp CTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE---ETTSSE
T ss_pred CccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE---CCCCcE
Confidence 211 012467789998 79999887763 68999999999999998 775555667888733 44444 346789
Q ss_pred EEEecCC-CeEEEEEe------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE--Eec---c---ccC----
Q 011970 253 KILSIED-GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--EVS---R---TEF---- 313 (474)
Q Consensus 253 kLWdi~t-G~~L~tl~------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~--~~l---~---~h~---- 313 (474)
.+|++++ |++..... .+...+ .+.+. +++..++..+.+++|.++|+..+... ... . .+.
T Consensus 176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 176 LTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred EEEEECCCCcEeeeccccceEcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence 9999875 77763321 111111 12223 45667777778899999999766432 211 1 011
Q ss_pred CceEEEEEcCCCcEEEEE-c-C----------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 011970 314 MTPSAFIFLYENQLFLTF-R-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~-s-D----------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~ 380 (474)
.....++|+||++.+..+ + + .+|.+||+. ++.+.++..|. . ++|+|+|||++|++++
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p------~~ia~spdg~~l~v~n--- 323 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-A------LSMTIDQQRNLMLTLD--- 323 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-C------CEEEEETTTTEEEEEC---
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-e------eEEEECCCCCEEEEeC---
Confidence 111137899996655443 3 2 489999995 99999999886 3 6899999999999753
Q ss_pred CccccccCCCCeEEEEeCCCC--eEEEEecCCCC
Q 011970 381 PEDQWMEGSAGSINVSSILTG--KCLAKINATNC 412 (474)
Q Consensus 381 ~~~~~~~s~DgtIklWdi~tG--~cl~tl~gH~~ 412 (474)
+++|.+||..|| ++++++.++..
T Consensus 324 ---------~~~v~v~D~~t~~l~~~~~i~~~G~ 348 (361)
T 2oiz_A 324 ---------GGNVNVYDISQPEPKLLRTIEGAAE 348 (361)
T ss_dssp ---------SSCEEEEECSSSSCEEEEEETTSCS
T ss_pred ---------CCeEEEEECCCCcceeeEEeccCCC
Confidence 389999999999 99999976654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=193.95 Aligned_cols=273 Identities=9% Similarity=0.019 Sum_probs=184.7
Q ss_pred EEEEeeCC--CeEEeeec--cccce--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCC
Q 011970 100 IVFALAHS--GVCAAFSR--ETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGK 172 (474)
Q Consensus 100 ~las~s~d--gtiklW~~--~tg~~--l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~ 172 (474)
.|+.|++. +.|.+|++ ++|+. +..........+..++|+|||+.|++++ .+ ++.+|++. +|+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-------~v~~~~~~~~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-------eEEEEEECCCCC
Confidence 35556653 56777664 56764 2222211234578899999999998765 22 68889986 787
Q ss_pred CCCccceeeeccccCceEEEEeCCCCe--EEEEec-------------CCCcEEEeecC-CCeEEEEEc------CCcEE
Q 011970 173 PDSGFALFESESLKWPGFVEFDDVNGK--VLTYSA-------------QDSIYKVFDLK-NYTMLYSIS------DKHVQ 230 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~~~~V~Fs~~nGk--~LaS~s-------------~D~tiKlWdl~-tg~~l~tl~------~~~V~ 230 (474)
+.. +......+.+..++|+ |||+ +|++++ .|+++++|++. +|++...+. ...+.
T Consensus 73 ~~~---~~~~~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 73 IVH---EASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp EEE---EEEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred EEE---eeEeecCCCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 522 2222111235578998 7999 455553 69999999997 587654442 35799
Q ss_pred EEEEcCCc-eEEEEecCCCCccEEEEecC-CCeEE--EEEe--ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC--
Q 011970 231 EIKISPGI-MLLIFNRSSSHVPLKILSIE-DGTVL--KVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-- 301 (474)
Q Consensus 231 ~vafSpg~-~la~~s~~s~D~tIkLWdi~-tG~~L--~tl~--~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~-- 301 (474)
+++|||++ .|+++. ..+..|++||+. +|++. ..+. .|......++|+ |++..++++. .+++|++|++.
T Consensus 149 ~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 149 GMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC
Confidence 99999865 455553 335789999998 88764 3443 234567889997 6777887776 57899999765
Q ss_pred CCceE------Eecc----ccCC------ceEEEE-EcCCCcEEEEEc--CC-----cEEEEeC--CCcEEE---EeccC
Q 011970 302 NAELM------EVSR----TEFM------TPSAFI-FLYENQLFLTFR--NR-----TVAVWNF--RGELVT---SFEDH 352 (474)
Q Consensus 302 tg~~~------~~l~----~h~~------~v~sv~-Fspdg~llaS~s--D~-----tIklWd~--~G~ll~---tl~gH 352 (474)
+|++. .++. +|.. .+..++ |+|||++|++++ +. +|++|++ +|++.. .+..+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~ 305 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence 67753 2232 2232 588999 999999877654 33 8999998 377654 23334
Q ss_pred CCCcCCCCeeEEEECC---CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 353 LLWHPDCNTNNIYITS---DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 353 ~~~~~~~~v~svafSp---Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
... ...++|+| ||++|++++. .+++|+||++..+ .+..
T Consensus 306 ~~~-----~~~~a~sp~~~dg~~l~v~~~----------~~~~v~v~~~~~~-~l~~ 346 (365)
T 1jof_A 306 TSG-----GHSNAVSPCPWSDEWMAITDD----------QEGWLEIYRWKDE-FLHR 346 (365)
T ss_dssp SCC-----TTCCCEEECTTCTTEEEEECS----------SSCEEEEEEEETT-EEEE
T ss_pred CCC-----cccceecCCCcCCCEEEEEEc----------CCCeEEEEEEchh-hCce
Confidence 332 36789999 8999998864 2589999998665 4443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-22 Score=210.59 Aligned_cols=295 Identities=10% Similarity=0.011 Sum_probs=194.8
Q ss_pred ccccEEEEEeeccEEEEee----CCCeEEeeeccccceeeEeecCCCceEE---------EEEEe--eCCCE-EEEEEee
Q 011970 87 KRTKVIEIVAARDIVFALA----HSGVCAAFSRETNRRICFLNVSPDEVIR---------SLFYN--KNNDS-LITVSVY 150 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s----~dgtiklW~~~tg~~l~~l~g~~~~~i~---------sv~fs--pdg~~-Lis~S~~ 150 (474)
|...|.++.++++.++-.+ .++..+||.+..+.....|.+++ ..++ +.+|+ |||+. |+.++ +
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~-~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH-F 99 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEB-T
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEE-C
Confidence 4567888889966544443 48899999976666677777633 4456 66565 99999 77543 1
Q ss_pred cCCCccceeeeEEEEeEec--c-CCCCCccceeeec---cccCceEEEEeCCCCeEEEEecCC----------CcEEEee
Q 011970 151 ASDNFSSLKCRSTKIEYIR--R-GKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQD----------SIYKVFD 214 (474)
Q Consensus 151 ~s~d~s~Lk~~~~~iw~i~--~-G~~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~D----------~tiKlWd 214 (474)
. + ..+.++++. . |+. . .|.... +...+..++|| |||+.|++++.| .+|++||
T Consensus 100 ~--~------~~l~~~~~~~~g~~~~-~--~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 100 G--D------QRLYAFEPDAPGGAVP-R--PLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp T--T------CCEEEECTTSTTCCCC-E--ECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred C--C------CeEEEEcCCCCCCCCC-E--eccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 1 2 234444433 2 443 1 222210 12345679999 799999999987 6899999
Q ss_pred cCC------CeEEEEE-c-CCcEEEEEEcCCc-eEEEEecCC-----CCccEEEEecC-CC---eEEEEEeecCcceeEE
Q 011970 215 LKN------YTMLYSI-S-DKHVQEIKISPGI-MLLIFNRSS-----SHVPLKILSIE-DG---TVLKVFYHLLHRNKKV 276 (474)
Q Consensus 215 l~t------g~~l~tl-~-~~~V~~vafSpg~-~la~~s~~s-----~D~tIkLWdi~-tG---~~L~tl~~h~~~v~~V 276 (474)
+.+ ++..... . ...+.+++|||++ +|+..+... ....|.+||++ +| ++.....+|...+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 988 6654322 2 3568889999855 555554322 12579999999 68 5555555667888999
Q ss_pred EEEecCCCeEEEEeCCC--cEEEEECCCCceEEeccccCCc--------eEEEEEcCCCcEEEEEcCCcEEEE--eCCCc
Q 011970 277 DFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGE 344 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~--tIkIWDv~tg~~~~~l~~h~~~--------v~sv~Fspdg~llaS~sD~tIklW--d~~G~ 344 (474)
+|+ |+|..++++..|+ +|.+||+.++++.++..++... +..++|+|++++++++++++++|| |.++.
T Consensus 248 ~~s-pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 326 (662)
T 3azo_A 248 EWA-PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG 326 (662)
T ss_dssp EEC-TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT
T ss_pred EEC-CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC
Confidence 998 5666444456777 6666777788887776655433 567999999999998877899999 66656
Q ss_pred EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--eEEEEeCCCCeEEEEecCCC
Q 011970 345 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATN 411 (474)
Q Consensus 345 ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gH~ 411 (474)
.++.+..|... +..+. ++||+.++-.+. +.+. .|.+||+.+|++......|.
T Consensus 327 ~~~~l~~~~~~-----~~~~~-s~~~~~~~~~~~---------~~~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 327 ELVDAAGPWTE-----WAATL-TVSGTRAVGVAA---------SPRTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EEEECCSSCCE-----EEEEE-EEETTEEEEEEE---------ETTEEEEEEEEETTTCCEEEEESCCC
T ss_pred cEEEecCCCCe-----EEEEE-ecCCCEEEEEEc---------CCCCCCEEEEEECCCCceEEeecCCc
Confidence 68899888654 45551 455554432221 1143 45666777888655444554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=225.45 Aligned_cols=232 Identities=11% Similarity=0.097 Sum_probs=166.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-----c--EEEEEEcCCce-EEEEecC------CCCccEEEE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----H--VQEIKISPGIM-LLIFNRS------SSHVPLKIL 255 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-----~--V~~vafSpg~~-la~~s~~------s~D~tIkLW 255 (474)
.|+|+ |||++|+++ |++|++||+++|++...+..+ . ..+++|||++. ||..+.. +....+.||
T Consensus 21 ~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 21 SLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 79998 799999987 999999999999987777632 1 24589998554 5544321 111456799
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCce-----------------E
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTP-----------------S 317 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v-----------------~ 317 (474)
|+++|++. .+..|...+..++|+ |+|.+|+.. .|++|.+||+.+|++.++ ..++...+ .
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~S-PdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred ECCCCcEE-EcccCCCcceeeEEC-CCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 99999865 466667789999998 678888776 578999999999998775 33443322 3
Q ss_pred EEEEcCCCcEEEEEc-CC------------------------------------cEEEEeCCC---c---EEEEec----
Q 011970 318 AFIFLYENQLFLTFR-NR------------------------------------TVAVWNFRG---E---LVTSFE---- 350 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~------------------------------------tIklWd~~G---~---ll~tl~---- 350 (474)
+++|||||+.||..+ |. +|.|||+++ . ....+.
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 589999999999886 43 478889854 2 333443
Q ss_pred --cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe----EEEE--e--cCCCCCCCCcccc
Q 011970 351 --DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK----CLAK--I--NATNCSPKVDDEL 420 (474)
Q Consensus 351 --gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~----cl~t--l--~gH~~~~~~~~~~ 420 (474)
+|..+ +.+++|||||++++..... .+.+.+|++||+.+|+ |... + ++|..
T Consensus 255 ~~~~~~~-----~~~~~wspdg~~~~~~~~r-------~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~-------- 314 (740)
T 4a5s_A 255 MLIGDHY-----LCDVTWATQERISLQWLRR-------IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG-------- 314 (740)
T ss_dssp HHTSCEE-----EEEEEEEETTEEEEEEEES-------STTEEEEEEEEEETTTTEEEECGGGCEEEECSSS--------
T ss_pred CCCCCeE-----EEEEEEeCCCeEEEEEeCC-------CCCEEEEEEEECCCCccccceeEEEEeeeccCCc--------
Confidence 36655 6899999999988876541 2235689999999998 6533 2 45553
Q ss_pred CCCCCCccccccccccccccccccccCE-----EEEEEcCCCCEEE-EEc-CCCc--EEEcc
Q 011970 421 GSSSTGKSKKLNKSSYIRSTVGEALEDI-----TSLFYDEERNEIY-TGN-RHGL--VHVWS 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V-----~slafSpDg~~La-Sgs-~Dgt--VklWd 473 (474)
+| .+++|||||+.|+ ..+ .+|. |.+||
T Consensus 315 --------------------------~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 315 --------------------------WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp --------------------------CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred --------------------------eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 33 3688999999987 666 5554 44444
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=191.37 Aligned_cols=245 Identities=12% Similarity=0.090 Sum_probs=186.6
Q ss_pred ccCceEEEEeCCCCeEEEEecCC------------------------CcEEEeecCCCeEEEEEcC---CcEEEEEEcCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSISD---KHVQEIKISPG 237 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D------------------------~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg 237 (474)
+..|..|+|+ |+|+++++.+.+ ++|.+||.++|+++..+.. .....|+|+|+
T Consensus 23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 5667789998 799999998887 4799999999998877652 47899999986
Q ss_pred ceEEEEecCCCCccEEEEecCCCe--EEEEE---------eecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGT--VLKVF---------YHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL 305 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~--~L~tl---------~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~ 305 (474)
+.|.++. ..++.|++||. +|+ .+.++ .++......|+|.+.++..+++.+ .++.|++|| .+|++
T Consensus 102 g~l~v~d--~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 102 GNYWVTD--VALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp SCEEEEE--TTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCEEEEE--CCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 6666654 44689999997 455 67777 344556789998732444444455 699999999 77888
Q ss_pred EEecc----------ccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 306 MEVSR----------TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 306 ~~~l~----------~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
+..+. ++...+..++|+|+ |+++++.+ +++|++||.+ |+++.++...... ..+.+++|+| |.+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG---RNVFAISYIP-GFL 253 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT---TCEEEEEEET-TEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC---CCcceeeecC-CEE
Confidence 77664 34566999999998 99999988 9999999997 9999999543221 1267999999 555
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 452 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 452 (474)
+++.+. .-.+...+.+|++||+.+|+++.++..... .+....+|+
T Consensus 254 ~~~~g~----~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-------------------------------~~~~p~~ia 298 (329)
T 3fvz_A 254 FAVNGK----PYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-------------------------------HFDMPHDIV 298 (329)
T ss_dssp EEEECC----CCTTCSCCCCEEEEETTTCCEEEEECCSSS-------------------------------CCSSEEEEE
T ss_pred EEeCCC----EEeccCCCcEEEEEEcCCCeEEEEEcCCCC-------------------------------ccCCeeEEE
Confidence 554321 223344577999999999999999842111 112789999
Q ss_pred EcCCCCEEEEEcCCCcEEEcc
Q 011970 453 YDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 453 fSpDg~~LaSgs~DgtVklWd 473 (474)
|+|||+.+++...++.|++|+
T Consensus 299 ~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 299 ASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp ECTTSEEEEEESSSCCEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEEe
Confidence 999999999999999999997
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=203.84 Aligned_cols=207 Identities=8% Similarity=0.062 Sum_probs=156.5
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCC-----------eEE-----EEEc-CCcEEEEEEcC-CceEEEEe-cCCCC
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----------TML-----YSIS-DKHVQEIKISP-GIMLLIFN-RSSSH 249 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg-----------~~l-----~tl~-~~~V~~vafSp-g~~la~~s-~~s~D 249 (474)
..++++ +++.+|+.++.|+ ++||+.... ... .+++ ...|.+++||| |.+||++. +++.|
T Consensus 40 n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 40 SLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp BCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred cEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 368998 6778899898888 999875311 111 1222 34699999998 45555311 25779
Q ss_pred ccEEEEecCCC--------e---EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEE
Q 011970 250 VPLKILSIEDG--------T---VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 318 (474)
Q Consensus 250 ~tIkLWdi~tG--------~---~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~s 318 (474)
++|+|||++++ + .++.+.+|...|..|+|++..+..|++++.|++|+|||+++++++....+|...|.+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999999876 2 256677888999999998544677888999999999999999887777789999999
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~--~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
++|+|+|++|++++ |++|++||.+|+...++..|.....+ ..|.+++|+|++.++++++..+.+. .....+++
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~----~~~~~v~i 273 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL----ETSPDVVM 273 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS----SSCCEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc----CCCCceEE
Confidence 99999999999999 99999999998888888777542110 1378999999999998876521000 01134999
Q ss_pred EeCCCC
Q 011970 396 SSILTG 401 (474)
Q Consensus 396 Wdi~tG 401 (474)
||+...
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=191.85 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=182.2
Q ss_pred ccEEEEeeC-CCe--EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 98 RDIVFALAH-SGV--CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 98 ~~~las~s~-dgt--iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
|+.||.++. +|. +.+|++.+|+......+ +...+.+++|||||+.|+.++ .+ +.+.+|++.+|+..
T Consensus 47 g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~~~~----~~------~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 47 GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALFYVK----DG------RNLMRVDLATLEEN 115 (388)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEEEEE----TT------TEEEEEETTTCCEE
T ss_pred CCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEEEEe----CC------CeEEEEECCCCcce
Confidence 888888887 775 77789888888776664 555566789999999999866 34 58899999988852
Q ss_pred CccceeeeccccCceEE--EEeCCCCeEEEE----------------------ecCCCcEEEeecCCCeEEEEEc-CCcE
Q 011970 175 SGFALFESESLKWPGFV--EFDDVNGKVLTY----------------------SAQDSIYKVFDLKNYTMLYSIS-DKHV 229 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V--~Fs~~nGk~LaS----------------------~s~D~tiKlWdl~tg~~l~tl~-~~~V 229 (474)
.++.. +..++... .++ |||+.|+. ...+..|.+||+++|+...... ...+
T Consensus 116 ---~~~~~-~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 190 (388)
T 3pe7_A 116 ---VVYQV-PAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWL 190 (388)
T ss_dssp ---EEEEC-CTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred ---eeeec-hhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccc
Confidence 23332 12233222 345 79999884 2356789999999998654433 4679
Q ss_pred EEEEEcC-CceEEEEecCCC----CccEEEEecCCCeEEEEEeecC--cceeEEEEEecCCCeEEEEe-C-CC---cEEE
Q 011970 230 QEIKISP-GIMLLIFNRSSS----HVPLKILSIEDGTVLKVFYHLL--HRNKKVDFIEQFNEKLLVKQ-E-NE---NLQI 297 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~----D~tIkLWdi~tG~~L~tl~~h~--~~v~~V~F~~~~~~~ll~~~-~-D~---tIkI 297 (474)
..++||| ++..+++..... ...|.++|+.+++. +.+..+. ..+..++|+ |++.+|+..+ . +. +|.+
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceEC-CCCCEEEEEecCCCCCcceEEE
Confidence 9999999 665444433222 34688888866544 4454433 256788887 6788787644 2 22 4999
Q ss_pred EECCCCceEEe--ccccCCc---eEEEEEcCCCcEEEEE---------c-CCcEEEEeCCCcEEEEeccCCC-Cc-----
Q 011970 298 LDVRNAELMEV--SRTEFMT---PSAFIFLYENQLFLTF---------R-NRTVAVWNFRGELVTSFEDHLL-WH----- 356 (474)
Q Consensus 298 WDv~tg~~~~~--l~~h~~~---v~sv~Fspdg~llaS~---------s-D~tIklWd~~G~ll~tl~gH~~-~~----- 356 (474)
||+.+|+...+ +.++... +..++|+|||+.|+.. . +..|.+||+++..++.+..|.. |.
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 99999985443 3331111 1123799999988853 4 6799999997555566776654 10
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
....+..++|||||++|+..+. .++...||.+
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~----------~~g~~~l~~~ 380 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSD----------VHGKPALYLA 380 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEEC----------TTSSCEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEec----------CCCceeEEEE
Confidence 0001467899999999998764 3677777754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-19 Score=173.29 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=185.3
Q ss_pred EEEEEeeccEEEEe---------eCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 91 VIEIVAARDIVFAL---------AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 91 V~~i~~s~~~las~---------s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|.+..+.|+.||.. ..++.+.+|++.+|+.. .| ..+.+++|||||+.|+.++..+... -.
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~~-----~~ 85 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----ENATMPRISPDGKKIAFMRANEEKK-----VS 85 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----ESCEEEEECTTSSEEEEEEEETTTT-----EE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----ccCCCeEECCCCCEEEEEEeccCCC-----cc
Confidence 33333356666543 23778999999988753 44 3478999999999999987543211 14
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC---------------------------CcEEEee
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---------------------------SIYKVFD 214 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---------------------------~tiKlWd 214 (474)
.+.++++..|+.. .+.... . +..++|+ |||+.|++++.+ ..|.+||
T Consensus 86 ~l~~~~~~~g~~~---~l~~~~--~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 86 EIWVADLETLSSK---KILEAK--N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEEETTTTEEE---EEEEES--E-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred eEEEEECCCCceE---EEEcCC--C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 5677787777652 244432 2 6689998 799999988743 5799999
Q ss_pred cCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCC----c-cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE
Q 011970 215 LKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH----V-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 215 l~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D----~-tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
+.+|+++..+....+..++|||++ ++..+....+ . ..+||.+.+|++. .+..+ ..+..+ .|+|.+|+..
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~---spdg~~l~~~ 232 (347)
T 2gop_A 159 TESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV---DSDGERILLY 232 (347)
T ss_dssp TTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE---EECSSCEEEE
T ss_pred CCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE---CCCCCEEEEE
Confidence 999987444432278899999977 4444322211 2 4455555477654 44433 444444 4788888886
Q ss_pred eCC--------CcEEEEECCCCceEEeccccCCceEE-EEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 290 QEN--------ENLQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 290 ~~D--------~tIkIWDv~tg~~~~~l~~h~~~v~s-v~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+.+ ..|.+|| ++++.++..+|...+.. ++|+ || ++++++ |++++|| ++ |++...+. +...
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~--- 303 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW--- 303 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE---
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe---
Confidence 633 4678888 78887777777778886 8999 98 888888 9999999 84 88755544 3433
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeE-EEEeCCCCeEEEEecCCCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI-NVSSILTGKCLAKINATNC 412 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI-klWdi~tG~cl~tl~gH~~ 412 (474)
|.+++|+| .++++++. +++. +||.+. |+ +..|..|+.
T Consensus 304 --v~~~~~s~--~~~~~~~~-----------~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 304 --IMGFDVDE--IVVYLKET-----------ATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp --EEEEEESS--SEEEEEEC-----------SSSCCEEEEES-SS-EEECCCTTS
T ss_pred --EEeeeeeC--cEEEEEcC-----------CCChHHheEeC-Cc-EEEeccccH
Confidence 78999999 77777764 4544 788876 76 566887763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=203.24 Aligned_cols=213 Identities=8% Similarity=-0.017 Sum_probs=159.2
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC----------eEEEEEe-----ecCc
Q 011970 208 SIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG----------TVLKVFY-----HLLH 271 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG----------~~L~tl~-----~h~~ 271 (474)
+.+|+|+... . +....+..++++| ++.+++++. |+ ++||+..+- ..+..+. .|..
T Consensus 23 ~~vri~~~~~-~----~~~~~~n~lavs~~~~~l~~~~~---dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE-E----LPKERSSLLAVSNKYGLVFAGGA---SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCS-S----CCCSCCBCEEEETTTTEEEEEET---TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCcc-c----cCCCCccEEEEecCCCEEEEECC---CE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 4689997431 1 3445678899997 667776532 44 999875321 0111111 2345
Q ss_pred ceeEEEEEecCCCeEE----EEeCCCcEEEEECCCC--------c---eEEeccccCCceEEEEEcCC-CcEEEEEc-CC
Q 011970 272 RNKKVDFIEQFNEKLL----VKQENENLQILDVRNA--------E---LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NR 334 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll----~~~~D~tIkIWDv~tg--------~---~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D~ 334 (474)
.+..++|+ +++..|+ +++.|++|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++ |+
T Consensus 94 ~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 69999998 6777888 5678999999999876 2 25678889999999999998 89999999 99
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
+|+|||++ ++++....+|... |.+++|+|||++||+|+. ||+|++||+. |+...++..|...
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~-----v~~v~wspdg~~lasgs~-----------dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVA-----VTSVCWSPKGKQLAVGKQ-----------NGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGC-----EEEEEECTTSSCEEEEET-----------TSCEEEECTT-CCEEEEECCCTTC
T ss_pred eEEEEEcCCCcceeeccCCCCc-----eeEEEEcCCCCEEEEEcC-----------CCcEEEEccC-CcccccccCCccc
Confidence 99999995 8787778888765 799999999999999987 9999999987 8888888877530
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-EcCCCc------EEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGL------VHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS-gs~Dgt------VklWd~ 474 (474)
. .++-..|.++.|+|++.++++ ++.||. +++|+.
T Consensus 236 -~--------------------------~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 236 -E--------------------------SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp -C--------------------------TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred -C--------------------------CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 0 000117999999999998854 334543 888873
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-19 Score=173.05 Aligned_cols=266 Identities=12% Similarity=0.101 Sum_probs=182.2
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC--
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-- 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D-- 207 (474)
..+.++.+ ||+.|+.+....... ..-....+.+|++..|+.. .+ ..+..++|| |||+.||+.+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~---~l------~~~~~~~~S-pDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNARR---FI------ENATMPRIS-PDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCEE---EE------ESCEEEEEC-TTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCceE---Ec------ccCCCeEEC-CCCCEEEEEEeccC
Confidence 45777788 999988765322110 0011267788888877741 22 234578998 799999988764
Q ss_pred -C--cEEEeecCCCeEEEEEcCCcEEEEEEcCCc-eEEEEecC------------------------CCCccEEEEecCC
Q 011970 208 -S--IYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRS------------------------SSHVPLKILSIED 259 (474)
Q Consensus 208 -~--tiKlWdl~tg~~l~tl~~~~V~~vafSpg~-~la~~s~~------------------------s~D~tIkLWdi~t 259 (474)
+ .|.+||+++|+.........+..++|||++ .|+..+.. .....|.+||+.+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred CCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 3 377889999886554432229999999854 56655421 0135799999999
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCC------C-cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------E-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D------~-tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
|++++.+.. . .+..++|+ |++ .++++..+ . ..+||.+.++++..... + ..+.++ ||||+.|+..+
T Consensus 162 ~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 162 EEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp TEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEEE--EECSSCEEEEE
T ss_pred CeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeCCCceEEecc-C-cceeeE--CCCCCEEEEEE
Confidence 998677765 3 78889998 555 44445443 2 45666555776655433 3 445544 99999888766
Q ss_pred -CC--------cEEEEeCCCcEEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 333 -NR--------TVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 333 -D~--------tIklWd~~G~ll~tl~gH~~~~~~~~v~s-vafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+. .|.+|| .|++...+.+|... +.+ ++|+ || ++++++. |++++|| +.+|+
T Consensus 234 ~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~-----~~~~~~~s-dg-~~~~~~~-----------~~~~~l~-~~~g~ 293 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG-----VGQAKIKD-GK-VYFTLFE-----------EGSVNLY-IWDGE 293 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE-----EEEEEEET-TE-EEEEEEE-----------TTEEEEE-EESSS
T ss_pred ccccCCccccceEEEEC-CCceEeccccCCcc-----cCCccEEc-Cc-EEEEEec-----------CCcEEEE-EcCCc
Confidence 43 677888 78876666666554 565 8999 99 9998876 8999999 88888
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE-EEcc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV-HVWS 473 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV-klWd 473 (474)
+...+ .+.. .|.+++|+| ..+++++.+++. +||.
T Consensus 294 ~~~~~-~~~~----------------------------------~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 294 IKPIA-KGRH----------------------------------WIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEEEE-CSSS----------------------------------EEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred eEEEe-cCCC----------------------------------eEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 75544 3443 789999999 788888887765 7774
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=169.90 Aligned_cols=241 Identities=11% Similarity=0.194 Sum_probs=179.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee--eccccCceEEEEeCCCCeEEEEec
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~--~~~~~~~~~V~Fs~~nGk~LaS~s 205 (474)
+-....+|+++|+|+.+++.+ .+ ..+.+|+.. |+....+.... ..+...|..++|++++|+++++..
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~----~~------~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADT----NN------HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEG----GG------TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEEC----CC------CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC
Confidence 335689999999999777532 33 578888854 66422111100 123456889999657999888875
Q ss_pred C-CCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEE
Q 011970 206 Q-DSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFI 279 (474)
Q Consensus 206 ~-D~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~ 279 (474)
. ++.|++|| .+|+.+.++.. ..+..|+|+|++.+.++. ..++.|.+||. +|+.+.++. .+......|+|.
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVE--CKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEE--TTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEE--CCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEEC
Confidence 4 89999999 67888887742 478999999866666653 34678999995 688888885 344567889986
Q ss_pred ecCCCeEEEE-eCCCcEEEEECCCCceEEeccc--cCCceEEEEEcCCCcEEEEEc-CC-cEEEEeCCCcEEEEeccCCC
Q 011970 280 EQFNEKLLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLL 354 (474)
Q Consensus 280 ~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~--h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~~G~ll~tl~gH~~ 354 (474)
+ ++ .+.++ ..++.|++||. +++.+..+.. +...+..++|+|+|+++++.. ++ +|.+||.+|+.+.++..|..
T Consensus 173 ~-~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 173 D-KQ-EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK 249 (286)
T ss_dssp S-SS-EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC
T ss_pred C-CC-CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCC
Confidence 4 44 45554 67999999996 5666665543 457899999999999999998 75 99999998999999987654
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.. ...+++|+|||+++++ +. |++|++|++...
T Consensus 250 ~~---~~~~i~~~~~g~l~vs-~~-----------~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HA---QCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 281 (286)
T ss_dssp CS---CEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred CC---cceeEEECCCCcEEEE-CC-----------CCeEEEEEcccc
Confidence 21 2578999999999887 44 899999997543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=176.09 Aligned_cols=239 Identities=10% Similarity=0.086 Sum_probs=185.7
Q ss_pred ccEEEEEee--ccEEEEeeCC------------------------CeEEeeeccccceeeEeecCCCceEEEEEEeeCCC
Q 011970 89 TKVIEIVAA--RDIVFALAHS------------------------GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~d------------------------gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~ 142 (474)
..|..|+++ |+++++.+.+ +++.+||..+|+.+..+...+-.....|+++|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 568889998 8899888888 58999999999998877644556789999999999
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccce-----eeeccccCceEEEEeCCCCeEEEEec-CCCcEEEee
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFAL-----FESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFD 214 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~l-----f~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWd 214 (474)
.+++. ..+ +.+.+|+ ..|+ ....+.- ...+++..|..|+|++.+|+++++.+ .++.|++||
T Consensus 104 l~v~d----~~~------~~v~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 104 YWVTD----VAL------HQVFKLD-PHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEE----TTT------TEEEEEC-TTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred EEEEE----CCC------CEEEEEe-CCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 77652 234 5788888 4555 2211100 00234667889999833899999997 799999999
Q ss_pred cCCCeEEEEEc--C----------CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEE
Q 011970 215 LKNYTMLYSIS--D----------KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFI 279 (474)
Q Consensus 215 l~tg~~l~tl~--~----------~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~ 279 (474)
.+|+++.++. + .....|+|+|+ +.|.++. ..+..|++||.++|+++.++. .+....+.++|.
T Consensus 173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence 6888888774 1 24899999985 7777774 446899999999999999995 345678899987
Q ss_pred ecCCCeEEEE-e-------CCCcEEEEECCCCceEEec---cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCc
Q 011970 280 EQFNEKLLVK-Q-------ENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 344 (474)
Q Consensus 280 ~~~~~~ll~~-~-------~D~tIkIWDv~tg~~~~~l---~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ 344 (474)
| +.++.. + .+.+|++||+.+|+++.++ .++...+..++|+|||+++++.. +++|++|+++|+
T Consensus 250 p---g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 250 P---GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp T---TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred C---CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 4 333332 2 3569999999999999887 47888999999999999999998 999999998653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-20 Score=179.80 Aligned_cols=259 Identities=9% Similarity=0.044 Sum_probs=169.0
Q ss_pred ccEEEEeeCC---CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 98 RDIVFALAHS---GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 98 ~~~las~s~d---gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
|+.||..+.. ..+.+|++.+|+...... .+......++|||||+.|+.++ .+ .++.+|++..|+..
T Consensus 47 G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~----~~------~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 47 GKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVK----NE------LNLMKVDLETLEEQ 115 (396)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEE----TT------TEEEEEETTTCCEE
T ss_pred CCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEE----cC------CcEEEEECCCCCcE
Confidence 7877766543 367888988887654433 2433334488999999998876 33 36889998888752
Q ss_pred CccceeeeccccCceE-------------------EEEeCCCCeEEEEe-----cCCCcEEEeecCCCeEEEEEc-CCcE
Q 011970 175 SGFALFESESLKWPGF-------------------VEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSIS-DKHV 229 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~-------------------V~Fs~~nGk~LaS~-----s~D~tiKlWdl~tg~~l~tl~-~~~V 229 (474)
.++.. +..|... ++|+ |||+.|+.. ..+..|.+||++++++..... ...+
T Consensus 116 ---~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~ 190 (396)
T 3c5m_A 116 ---VIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL 190 (396)
T ss_dssp ---EEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred ---EEEec-ccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc
Confidence 23331 1122111 3455 677777654 467789999999998655443 4679
Q ss_pred EEEEEcC-Cc-eEEEEecCCCC----ccEEEEecCCCeEEEEEeec-CcceeEEEEEecCCCeEEEEeCC-----CcEEE
Q 011970 230 QEIKISP-GI-MLLIFNRSSSH----VPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQEN-----ENLQI 297 (474)
Q Consensus 230 ~~vafSp-g~-~la~~s~~s~D----~tIkLWdi~tG~~L~tl~~h-~~~v~~V~F~~~~~~~ll~~~~D-----~tIkI 297 (474)
..++||| ++ .|+..+. ... ..|.+||+.+++......+. ...+..++|+ |++.+|+..+.+ ++|.+
T Consensus 191 ~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC-CCCCEEEEEecCCCCccceEEE
Confidence 9999999 44 4655543 222 46899998776543333321 2356778987 678878776533 45999
Q ss_pred EECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-----------------CCcEEEEeCC-CcEEEEeccCCCCc--
Q 011970 298 LDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-----------------NRTVAVWNFR-GELVTSFEDHLLWH-- 356 (474)
Q Consensus 298 WDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-----------------D~tIklWd~~-G~ll~tl~gH~~~~-- 356 (474)
||+.+++...+.... ... ++|+| ||+++++++ +..|.+||+. |++ +.+..|....
T Consensus 269 ~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 344 (396)
T 3c5m_A 269 ANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV 344 (396)
T ss_dssp ECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCC
T ss_pred EECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccc
Confidence 999999876543221 122 88999 999998753 3789999996 654 4555554310
Q ss_pred ----CCCCeeEEEECCCCCEEEEEec
Q 011970 357 ----PDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 357 ----~~~~v~svafSpDg~~LaS~s~ 378 (474)
....+..++|+|||+.|+..+.
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEec
Confidence 0001356789999999998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-19 Score=188.36 Aligned_cols=284 Identities=7% Similarity=-0.028 Sum_probs=186.3
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCce---------EEEEe
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---------FVEFD 194 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~---------~V~Fs 194 (474)
|.+ |...|.+++|++++- +-++...+.+ ...+||....+.... .+..+. ..+. .+.|+
T Consensus 19 ~~~-~~~~~~~~~~s~~~~--~~~~~~~~~~------~~~~l~~~~~~~~~~--~l~~~~--~~~~~~~~~~~~~~~~~~ 85 (662)
T 3azo_A 19 VAS-RSGRPACVGAVGDEV--WWVAPRPAEA------GRATLVRRRADGAEE--SALPAP--WNVRNRVFEYSGFPWAGV 85 (662)
T ss_dssp HHH-TCSCCEEEEEETTEE--EEEEEETTTT------TEEEEEEECTTSCEE--ESSCTT--CCBCCCGGGTCCCCEEEE
T ss_pred Hhh-cCCccceeEEcCCeE--EEEecCcccC------CcEEEEEECCCCCcc--eeCCCC--ccccccccccCCccceee
Confidence 444 567899999997654 4444322344 567888864332211 111111 1111 34565
Q ss_pred C-CCCeE-EEEecC-CCcEEEeecC--C-CeEEEEEc-------CCcEEEEEEcCC-ceEEEEecC-------CCCccEE
Q 011970 195 D-VNGKV-LTYSAQ-DSIYKVFDLK--N-YTMLYSIS-------DKHVQEIKISPG-IMLLIFNRS-------SSHVPLK 253 (474)
Q Consensus 195 ~-~nGk~-LaS~s~-D~tiKlWdl~--t-g~~l~tl~-------~~~V~~vafSpg-~~la~~s~~-------s~D~tIk 253 (474)
. |||+. ||+++. +..|.+||+. + ++ ...+. ...+.+++|||+ ..|+..+.. ....+|+
T Consensus 86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 2 89998 887764 4556666655 2 44 34443 246889999985 556655432 1115899
Q ss_pred EEecCC------CeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCC--------CcEEEEECC-CC---ceEEeccccCC
Q 011970 254 ILSIED------GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVR-NA---ELMEVSRTEFM 314 (474)
Q Consensus 254 LWdi~t------G~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D--------~tIkIWDv~-tg---~~~~~l~~h~~ 314 (474)
+||+.+ |++. .+. .+...+..++|+ |+|.+|+..+.| .+|.+||+. +| ++..+..+|..
T Consensus 165 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 165 AVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEETTSTTTTCGGGSE-ESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEECCCCccccCCcee-EEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 999988 6654 454 445677889997 788888887644 379999999 68 66666666778
Q ss_pred ceEEEEEcCCCcEEEEEc-CC--cEEEEeC-CCcEEEEeccCCC-----CcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 315 TPSAFIFLYENQLFLTFR-NR--TVAVWNF-RGELVTSFEDHLL-----WHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~--tIklWd~-~G~ll~tl~gH~~-----~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.+..++|+|||+++++++ |+ .|.+||. .|++.+.+.+|.. |.++ +..++|+|||+++++++
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~--~~~~~~~~~~~~~~~~~-------- 312 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG--MRWFAPLANGLIAVVHG-------- 312 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT--CCSEEECTTSCEEEEEB--------
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc--CceEeEeCCCEEEEEEE--------
Confidence 899999999999888887 88 5556666 3776554444332 2221 45799999999999864
Q ss_pred ccCCCCeEEEE--eCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEE-EEcCCCCEEEE
Q 011970 386 MEGSAGSINVS--SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIYT 462 (474)
Q Consensus 386 ~~s~DgtIklW--di~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl-afSpDg~~LaS 462 (474)
. ++++|| |+.+|+ +++|..|.. .|.++ ++++++-.+++
T Consensus 313 ---~-~~~~l~~~d~~~~~-~~~l~~~~~----------------------------------~~~~~~s~~~~~~~~~~ 353 (662)
T 3azo_A 313 ---K-GAAVLGILDPESGE-LVDAAGPWT----------------------------------EWAATLTVSGTRAVGVA 353 (662)
T ss_dssp ---S-SSCEEEEEETTTTE-EEECCSSCC----------------------------------EEEEEEEEETTEEEEEE
T ss_pred ---c-CccEEEEEECCCCc-EEEecCCCC----------------------------------eEEEEEecCCCEEEEEE
Confidence 3 788999 765555 788888864 67766 56555555667
Q ss_pred EcCCCcEEEc
Q 011970 463 GNRHGLVHVW 472 (474)
Q Consensus 463 gs~DgtVklW 472 (474)
++.+....||
T Consensus 354 ~~~~~~~~i~ 363 (662)
T 3azo_A 354 ASPRTAYEVV 363 (662)
T ss_dssp EETTEEEEEE
T ss_pred cCCCCCCEEE
Confidence 7777766666
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=189.60 Aligned_cols=283 Identities=11% Similarity=0.074 Sum_probs=196.3
Q ss_pred ccEEEEeeCCC---eEEeeecc--ccceeeEeec-----CCCceEEEEEEeeCCCEEEEEEe-ecCCCccceeeeEEEEe
Q 011970 98 RDIVFALAHSG---VCAAFSRE--TNRRICFLNV-----SPDEVIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIE 166 (474)
Q Consensus 98 ~~~las~s~dg---tiklW~~~--tg~~l~~l~g-----~~~~~i~sv~fspdg~~Lis~S~-~~s~d~s~Lk~~~~~iw 166 (474)
|+.++-...++ .-.||-+. .|+.-..+.. .|...+.+++|||||+.||.++. .|+++ .++++|
T Consensus 79 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~------~~i~v~ 152 (695)
T 2bkl_A 79 NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE------AVLHVI 152 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC------CEEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce------EEEEEE
Confidence 67776666554 45666543 4443323321 24457999999999999986554 45556 789999
Q ss_pred EeccCCCCCccceeeeccccCc--eEEEEeCCCCeEEEEecCCCc-------------EEEeecCCCe----EEEEEcC-
Q 011970 167 YIRRGKPDSGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSI-------------YKVFDLKNYT----MLYSISD- 226 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~~nGk~LaS~s~D~t-------------iKlWdl~tg~----~l~tl~~- 226 (474)
|+.+|+.... .++.++ ..++|+ |||+.|++++.|.+ |++|++.+++ +++...+
T Consensus 153 dl~tg~~~~~------~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 153 DVDSGEWSKV------DVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp ETTTCCBCSS------CCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred ECCCCCCcCC------cccCcccccceEEe-cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 9999986310 012222 479998 79999999999887 9999999886 5555543
Q ss_pred -CcEEEEEEcC-CceEEEEecCC-CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe----CCCcEEEEE
Q 011970 227 -KHVQEIKISP-GIMLLIFNRSS-SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILD 299 (474)
Q Consensus 227 -~~V~~vafSp-g~~la~~s~~s-~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkIWD 299 (474)
..+.+++||| |..|++.+... ....|.+||..+|+ ++.+..+...+..+.+ ++++ +++.+ .++.|.+||
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~--~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA--WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE--ETTE-EEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe--cCCc-EEEEECCCCCCCEEEEEe
Confidence 4789999998 55565554322 23468888877775 4455555555666665 4556 66654 368999999
Q ss_pred CCCCce---EEecccc-CCceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcEEEEeccC-CCCcCCCCeeEEEECCCCC
Q 011970 300 VRNAEL---MEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 300 v~tg~~---~~~l~~h-~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~ll~tl~gH-~~~~~~~~v~svafSpDg~ 371 (474)
+.+++. ..+..++ ...+..++|+ +++++++.+ |++.+||.+ +|+.++.+..+ ... |..++++|||+
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~ 375 (695)
T 2bkl_A 302 PAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA-----ASNLMGLEDLD 375 (695)
T ss_dssp TTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE-----ECCCBSCTTCS
T ss_pred CCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE-----EEEeecCCCCC
Confidence 998863 4444444 5567888888 888999988 999999876 48888888765 333 57788999998
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.|+-...+ ....++|.+||+.+|+ +..|+.+.
T Consensus 376 ~l~~~~ss-------~~~P~~v~~~d~~~g~-~~~l~~~~ 407 (695)
T 2bkl_A 376 DAYYVFTS-------FTTPRQIYKTSVSTGK-SELWAKVD 407 (695)
T ss_dssp EEEEEEEE-------TTEEEEEEEEETTTCC-EEEEEECC
T ss_pred EEEEEEcC-------CCCCCEEEEEECCCCc-EEEEecCC
Confidence 77733221 2347899999999988 45666654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=176.55 Aligned_cols=265 Identities=14% Similarity=0.108 Sum_probs=180.5
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEeecCCCeEEEEEc-----
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS----- 225 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWdl~tg~~l~tl~----- 225 (474)
.++.+||..+|++...+ ..+ ..| .++|+ |||++|..+. .|++|.+||+.+++.+.++.
T Consensus 31 ~~v~v~D~~t~~~~~~i---~~g--~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMV---PTA--FNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTTCCEEEEE---ECC--EEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCCCeEEEEe---cCC--CCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 68899999999874322 211 234 89998 7999888775 36789999999999988875
Q ss_pred ---CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 226 ---DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 226 ---~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
+.....++|||++ +|+++.. +.+.+|.+||+++++.+.+ +... ....+.+.|.....+++.+.|+.+.+|++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 1346679999854 5555532 2357899999999999998 6532 22445555332345666789999999998
Q ss_pred CC-CceEE------eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--EEEEec------cCCCCcCCCCeeE
Q 011970 301 RN-AELME------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFE------DHLLWHPDCNTNN 363 (474)
Q Consensus 301 ~t-g~~~~------~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--ll~tl~------gH~~~~~~~~v~s 363 (474)
.. ++... ++..+.. +..+.++|++..++..+ +++|.++|+. ++ .+.+++ .+..|.+.. ...
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~~ 258 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG-YNL 258 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC-SSC
T ss_pred CCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC-eeE
Confidence 75 66652 2222222 22345678888877777 9999999995 33 233332 122232211 123
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccc
Q 011970 364 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 443 (474)
Q Consensus 364 vafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (474)
++|+|||+.+..++.....+......+++|.+||+.|++.++++..|.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------------------------------- 306 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------------------------------- 306 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--------------------------------
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--------------------------------
Confidence 899999888776542000000000124689999999999999998764
Q ss_pred cccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 444 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+++++|||||++||+++. ++|.+||.
T Consensus 307 ----p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 307 ----ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ----CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ----eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 357999999999999997 99999983
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-18 Score=161.67 Aligned_cols=227 Identities=11% Similarity=0.089 Sum_probs=166.2
Q ss_pred ccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
..++..++|+ |+|+ +++++..++.|.+||.+++...+......+..++|+|++.|+++. ..+..|.+||.++|++.
T Consensus 27 ~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~--~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 27 FTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACS--HGLRRLERQREPGGEWE 103 (296)
T ss_dssp CSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEE--TTTTEEEEECSTTCCEE
T ss_pred CccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEe--cCCCeEEEEcCCCCcEE
Confidence 5677799998 7887 888899999999999988722223345679999999866666654 33578999999999876
Q ss_pred EEEeec----CcceeEEEEEecCCCeEEE----Ee-------------CCCcEEEEECCCCceEEeccccCCceEEEEEc
Q 011970 264 KVFYHL----LHRNKKVDFIEQFNEKLLV----KQ-------------ENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 264 ~tl~~h----~~~v~~V~F~~~~~~~ll~----~~-------------~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs 322 (474)
..+... ......++|. ++|..+++ +. ..+.|..+|.. ++. ..+..+...+..++|+
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEEC
T ss_pred EEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEEC
Confidence 544322 2244678886 45544443 22 12344445544 554 3445667788999999
Q ss_pred CCCcEEEEEc-CCcEEEEeCC--CcE---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 323 YENQLFLTFR-NRTVAVWNFR--GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~~--G~l---l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
|||+++++.+ +++|.+||++ |++ ...+..+... ...++|+|||++.++. ++.|.+|
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~-------------~~~v~~~ 242 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK-----TDGLRVDAGGLIWASA-------------GDGVHVL 242 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC-----CCSEEEBTTSCEEEEE-------------TTEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC-----CCeEEECCCCCEEEEc-------------CCeEEEE
Confidence 9999987777 8999999983 776 4555333322 4689999999998874 5789999
Q ss_pred eCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEEcCCCcEEE
Q 011970 397 SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 397 di~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-SpDg~~LaSgs~DgtVkl 471 (474)
|. .|+++.++..+. .+++++| +||++.|+.++.++.+++
T Consensus 243 ~~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 243 TP-DGDELGRVLTPQ-----------------------------------TTSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp CT-TSCEEEEEECSS-----------------------------------CCCEEEEESTTSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-----------------------------------CceeEEEECCCCCEEEEEcCCeEEEE
Confidence 97 599999998776 3678999 699999999999887665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=166.11 Aligned_cols=270 Identities=11% Similarity=0.101 Sum_probs=181.9
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
..|++++|+|++..++..+ .+ +.++.| .++.. ..+. ++..++..++|+ ++|++++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~----~~------~~~~~~---~~~~~---~~~~-~~~~~~~~~~~~-~~g~l~~~~~~~~~ 67 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPII----SE------SELQTI---TAEPW---LEIS-KKGLQLEGLNFD-RQGQLFLLDVFEGN 67 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCC----CG------GGSCEE---ECEEE---EEEE-SSCCCEEEEEEC-TTSCEEEEETTTCE
T ss_pred cccceeeecCCccceeEEe----ec------ccCccc---cccee---EEEe-ccCccccCcEEC-CCCCEEEEECCCCE
Confidence 4578899999998776642 12 233333 12210 0111 134567789998 79998888999999
Q ss_pred EEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEecCC--CCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCC
Q 011970 210 YKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSS--SHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFN 283 (474)
Q Consensus 210 iKlWdl~tg~~l~tl--~~~~V~~vafSpg~~la~~s~~s--~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~ 283 (474)
|.+||++++++.... ....+.+++++|++.++++.... ....|.+||.++++....+. .+...+..++|. +++
T Consensus 68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d-~~g 146 (333)
T 2dg1_A 68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKG 146 (333)
T ss_dssp EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTS
T ss_pred EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-CCC
Confidence 999999998876544 35689999999866666554221 01579999999887654443 233567888886 445
Q ss_pred CeEEEEeC-------CCcEEEEECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeC--CCcEEEEe---
Q 011970 284 EKLLVKQE-------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF--RGELVTSF--- 349 (474)
Q Consensus 284 ~~ll~~~~-------D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~--~G~ll~tl--- 349 (474)
.+.++.. .+.|..+|..+++..... .+...+..++|+|||+ ++++.+ ++.|.+||+ +|+.+..+
T Consensus 147 -~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 147 -GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp -CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred -CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence 4555433 245666666666655443 3445688999999998 556666 899999999 46554332
Q ss_pred -----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCC
Q 011970 350 -----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 350 -----~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
.++. ....++++|||+++++... ++.|.+||. +|+.+.++..+.. ..
T Consensus 225 ~~~~~~~~~------~~~~i~~d~~G~l~v~~~~-----------~~~v~~~d~-~g~~~~~~~~~~~-~~--------- 276 (333)
T 2dg1_A 225 IPYYFTGHE------GPDSCCIDSDDNLYVAMYG-----------QGRVLVFNK-RGYPIGQILIPGR-DE--------- 276 (333)
T ss_dssp EEEECCSSS------EEEEEEEBTTCCEEEEEET-----------TTEEEEECT-TSCEEEEEECTTG-GG---------
T ss_pred EEEecCCCC------CCCceEECCCCCEEEEEcC-----------CCEEEEECC-CCCEEEEEEcCCC-cc---------
Confidence 2331 1578999999999988654 789999997 7888888865431 00
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
-.+..+.+++|+|||+.|+.++.+
T Consensus 277 ------------------g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 ------------------GHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ------------------TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ------------------ccccCcceEEECCCCCEEEEEeCc
Confidence 001147789999999888766555
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-17 Score=177.25 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=184.8
Q ss_pred CCceEEEEEEeeCCCEEEEEEeec-CCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYA-SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~-s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~ 206 (474)
+...+.+++|||||+.||.++..+ ++. .++++||+.+|+.... ... ... +..++|+ |||+.|++++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~------~~i~v~d~~tg~~~~~--~~~--~~~-~~~~~ws-pDg~~l~~~~~ 190 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDW------VTIKFMKVDGAKELPD--VLE--RVK-FSCMAWT-HDGKGMFYNAY 190 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSC------EEEEEEETTTTEEEEE--EEE--EEC-SCCEEEC-TTSSEEEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCce------EEEEEEECCCCCCCcc--ccc--Ccc-cceEEEE-eCCCEEEEEEE
Confidence 334689999999999999877644 333 5899999999986321 111 121 4479998 79999999998
Q ss_pred CCc----------------EEEeecCCCe----EEEEEcC--CcEEEEEEcC-CceEEEEecCCC--CccEEEEecCC--
Q 011970 207 DSI----------------YKVFDLKNYT----MLYSISD--KHVQEIKISP-GIMLLIFNRSSS--HVPLKILSIED-- 259 (474)
Q Consensus 207 D~t----------------iKlWdl~tg~----~l~tl~~--~~V~~vafSp-g~~la~~s~~s~--D~tIkLWdi~t-- 259 (474)
|+. |++|++.+++ +++.... ..+.+++||| |..|+..+..+. +..|.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 877 9999999876 4444432 4588999998 455655543222 56899999987
Q ss_pred ----Ce-EEEEEeecCcceeEEEEEecCCCeEEEEeC----CCcEEEEECCCCc--eEEeccccCC--ceEEEEEcCCCc
Q 011970 260 ----GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAE--LMEVSRTEFM--TPSAFIFLYENQ 326 (474)
Q Consensus 260 ----G~-~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~----D~tIkIWDv~tg~--~~~~l~~h~~--~v~sv~Fspdg~ 326 (474)
|+ .++.+..+...+..+ |+ +++++|+..+. +..|.+||+.+++ ..+.+..|.. .+..++|++++.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~-~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYDY-VT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cccCCccceEEeeCCCCcEEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 64 467777665555443 54 57888887653 3469999999875 2344444433 688899999999
Q ss_pred EEEEEc-CCc--EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 327 LFLTFR-NRT--VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 327 llaS~s-D~t--IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
++++.+ |+. |.+||+ +|++++.+..|... +..++++||++.|+-...+ ....++|.+||+.+|+
T Consensus 349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~d~~~l~~~~ss-------~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQKKDTEIFYQFTS-------FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCTTCSEEEEEEEC-------SSCCCEEEEEETTSSS
T ss_pred EEEEEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCCCCCEEEEEEeC-------CCCCCEEEEEECCCCc
Confidence 999998 884 566788 69998999887543 6889999999766533221 2357899999999998
Q ss_pred E-EEEecCCC
Q 011970 403 C-LAKINATN 411 (474)
Q Consensus 403 c-l~tl~gH~ 411 (474)
+ +..++.+.
T Consensus 417 ~~~~~l~~~~ 426 (710)
T 2xdw_A 417 LEPRVFREVT 426 (710)
T ss_dssp CCCEEEEECC
T ss_pred cceEEeeecc
Confidence 5 56666544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=184.41 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=168.9
Q ss_pred CceEEEEeCCCCeEEEEecCCC-----cEEEeecCCCeEEE-EEcCCcEEEEEEcCCc-eEEEEecCCC-----------
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKHVQEIKISPGI-MLLIFNRSSS----------- 248 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~-----tiKlWdl~tg~~l~-tl~~~~V~~vafSpg~-~la~~s~~s~----------- 248 (474)
.+..++|| |||+.||+++.++ +|++||+++|+.+. ++....+.+++|||++ .|+.++....
T Consensus 126 ~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 35578998 8999999877644 99999999999765 3433346789999854 5555433211
Q ss_pred --CccEEEEecCCCe----EEEEEeecCcceeEEEEEecCCCeEEEEeC-----CCcEEEEECCC------Cc-eEEecc
Q 011970 249 --HVPLKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRN------AE-LMEVSR 310 (474)
Q Consensus 249 --D~tIkLWdi~tG~----~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-----D~tIkIWDv~t------g~-~~~~l~ 310 (474)
...|++|++.+++ ++.+...|...+..+.|+ |++.+|+..+. +..|.+||+.+ ++ ..+.+.
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 1239999999987 222222344557788987 78888888653 67899999987 64 355556
Q ss_pred ccCCceEEEEEcCCCcEEEEEc--C---CcEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 311 TEFMTPSAFIFLYENQLFLTFR--N---RTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~llaS~s--D---~tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
.|...+.. .|+|||+.|+..+ + ..|.+||+. ++ ..+++..|.... .+.+++|++++.+++++..
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~lv~~~~~---- 355 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD---VLEWVACVRSNFLVLCYLH---- 355 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---EEEEEEEETTTEEEEEEEE----
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC---eEEEEEEEcCCEEEEEEEE----
Confidence 66666655 4788888766544 3 269999995 54 345666665421 2678999999999999876
Q ss_pred cccccCCCCe--EEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 011970 383 DQWMEGSAGS--INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 460 (474)
Q Consensus 383 ~~~~~s~Dgt--IklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L 460 (474)
|+. |.+||+.+|++++.|..|.. .|.+++++||++.|
T Consensus 356 -------~g~~~l~~~~~~~g~~~~~l~~~~~----------------------------------~v~~~~~s~d~~~l 394 (710)
T 2xdw_A 356 -------DVKNTLQLHDLATGALLKIFPLEVG----------------------------------SVVGYSGQKKDTEI 394 (710)
T ss_dssp -------TTEEEEEEEETTTCCEEEEECCCSS----------------------------------EEEEEECCTTCSEE
T ss_pred -------CCEEEEEEEECCCCCEEEecCCCCc----------------------------------eEEEEecCCCCCEE
Confidence 774 56678778999999988753 78899999999877
Q ss_pred E----EEcCCCcEEEccC
Q 011970 461 Y----TGNRHGLVHVWSN 474 (474)
Q Consensus 461 a----Sgs~DgtVklWd~ 474 (474)
+ |....++|.+||.
T Consensus 395 ~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEECSSCCCEEEEEET
T ss_pred EEEEeCCCCCCEEEEEEC
Confidence 6 3335678888873
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=188.40 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=163.8
Q ss_pred CceEEEEeCCCCeEEE-----EecCCCcEEEeecCCCeEE-E-EEcCCcEEEEEEcCCce-EEEEecCCCCcc-------
Q 011970 187 WPGFVEFDDVNGKVLT-----YSAQDSIYKVFDLKNYTML-Y-SISDKHVQEIKISPGIM-LLIFNRSSSHVP------- 251 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~La-----S~s~D~tiKlWdl~tg~~l-~-tl~~~~V~~vafSpg~~-la~~s~~s~D~t------- 251 (474)
.+..++|| |||++|| +|+.+.+|++||+++|+.+ . .+......+++|||++. |+..+. |.+
T Consensus 122 ~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~---d~~~~~~~~~ 197 (695)
T 2bkl_A 122 SLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWL---PTDPSIKVDE 197 (695)
T ss_dssp EEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEEC---CCCTTSCGGG
T ss_pred EEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEe---cCCCCCcccc
Confidence 35679998 8999999 5556789999999999875 2 12222226899998654 544432 333
Q ss_pred ------EEEEecCCCe----EEEEEeecCcceeEEEEEecCCCeEEEEeCCC----cEEEEECCCCceEEeccccCCceE
Q 011970 252 ------LKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 252 ------IkLWdi~tG~----~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~----tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
|++|++.+|+ ++.....|...+..+.|+ |+|.+|++.+.++ .|.+||..+++...+ ..+...+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~ 275 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-VKGVGAKY 275 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCSSCEEE-EECSSCCE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCCceEEe-ecCCCceE
Confidence 9999999887 444444455678899987 6788888876555 677777766765544 44555666
Q ss_pred EEEEcCCCcEEEEEc----CCcEEEEeCC-CcE--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 318 AFIFLYENQLFLTFR----NRTVAVWNFR-GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 318 sv~Fspdg~llaS~s----D~tIklWd~~-G~l--l~tl~gH~-~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
..++ |+|++++++. ++.|.+||++ ++. .+.+..|. .. .+.+++|+ ++++++++..
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~----~l~~~~~~-~~~lv~~~~~----------- 338 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA----SLLSVSIV-GGHLSLEYLK----------- 338 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC----EEEEEEEE-TTEEEEEEEE-----------
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC----eEEEEEEE-CCEEEEEEEE-----------
Confidence 6667 5555666654 4789999995 653 23343333 33 26788998 8889999877
Q ss_pred CCeEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EEc
Q 011970 390 AGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGN 464 (474)
Q Consensus 390 DgtIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La----Sgs 464 (474)
|++.+||.+. +|++++.+..+.. ..|.+++++|||+.|+ |..
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~~~~---------------------------------~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQLPGV---------------------------------GAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCCSSS---------------------------------SEECCCBSCTTCSEEEEEEEETT
T ss_pred CCEEEEEEEeCCCCeeEEecCCCC---------------------------------eEEEEeecCCCCCEEEEEEcCCC
Confidence 9999998764 6888888876531 1677889999999888 556
Q ss_pred CCCcEEEccC
Q 011970 465 RHGLVHVWSN 474 (474)
Q Consensus 465 ~DgtVklWd~ 474 (474)
.+++|.+||.
T Consensus 386 ~P~~v~~~d~ 395 (695)
T 2bkl_A 386 TPRQIYKTSV 395 (695)
T ss_dssp EEEEEEEEET
T ss_pred CCCEEEEEEC
Confidence 6788999973
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-17 Score=160.66 Aligned_cols=252 Identities=8% Similarity=0.043 Sum_probs=188.1
Q ss_pred eEEEEeEeccCCCCCccceeee---ccc-cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc
Q 011970 161 RSTKIEYIRRGKPDSGFALFES---ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~---~~~-~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS 235 (474)
.++.++|..+|+....+ +.. ..+ ..+..++++ ++++.++...+++|.+||.++++.+.++. ......|+|+
T Consensus 17 ~~l~~~d~~t~~~~~~i--~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEV--FYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp BEEEEEETTTTEEECSH--HHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred ceEEEEECCCCEEhhhh--HhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 68888888888864321 211 012 234578886 68888888889999999999999999886 4679999998
Q ss_pred CCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-----cceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEe
Q 011970 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-----HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEV 308 (474)
Q Consensus 236 pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-----~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~ 308 (474)
|++.+.++.. .++.|.+||+++++++.++.... .....+++ +++++.++. .+++|.++|+.+++.+.+
T Consensus 93 ~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 93 SDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp ETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 7667776642 36899999999999998887322 14456776 367888875 489999999999998876
Q ss_pred ccccCCceEEEEEcCCCcEEEEEc-C----------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 SRTEFMTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 l~~h~~~v~sv~Fspdg~llaS~s-D----------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
.... ..+..++|+|||+++++.. + ++|.++|.. ++++.++.-..... .+.++|+|||++|...
T Consensus 168 i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~----p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 168 LTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW----PSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC----CEEEEECTTSCEEEEE
T ss_pred EEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC----ceeEEEecCCCEEEEE
Confidence 5432 3567899999999999887 5 799999995 88887775322211 4799999999998865
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEE--ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
+++|.+||+.+|+.... +..+ ....+.++++
T Consensus 243 -------------~~~v~~~d~~t~~~~~~~~~~~~----------------------------------~~~p~gi~vd 275 (328)
T 3dsm_A 243 -------------NNDIWRMPVEADRVPVRPFLEFR----------------------------------DTKYYGLTVN 275 (328)
T ss_dssp -------------SSSEEEEETTCSSCCSSCSBCCC----------------------------------SSCEEEEEEC
T ss_pred -------------ccEEEEEECCCCceeeeeeecCC----------------------------------CCceEEEEEc
Confidence 34899999988886321 1110 1267889999
Q ss_pred C-CCCEEEEE----cCCCcEEEcc
Q 011970 455 E-ERNEIYTG----NRHGLVHVWS 473 (474)
Q Consensus 455 p-Dg~~LaSg----s~DgtVklWd 473 (474)
| +|+..++. ..+++|.+||
T Consensus 276 p~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 276 PNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp TTTCCEEEEECTTSSSEEEEEEEC
T ss_pred CCCCeEEEEcccccccCCEEEEEC
Confidence 9 56666666 6789999997
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-17 Score=158.13 Aligned_cols=215 Identities=9% Similarity=0.030 Sum_probs=170.8
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec-Ccce
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRN 273 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~v 273 (474)
|++|++++.|+.|.+||.++|+.+.++.. ..+.+++++|++.++++ .+..|..||. +|+.+.++..+ ...+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs----~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS----YSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE----CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe----CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 68999999999999999999999999874 36899999986666553 2568999998 99999999854 3467
Q ss_pred eEEEEEecCCCeEEEEeC-CCcEEEEECCCCceEEecc------ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE
Q 011970 274 KKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~-D~tIkIWDv~tg~~~~~l~------~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l 345 (474)
.++.+. +++..+++.+. ++.|..+|. +|+.+..+. ++...+..++++++|+++++.. ++.|..||.+|+.
T Consensus 80 ~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~ 157 (276)
T 3no2_A 80 QTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL 157 (276)
T ss_dssp EEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred cccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCE
Confidence 788886 56666666666 788888885 787765432 3334666778999999999998 9999999999999
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
+.++..+.. ..++.+.|+|++|++++. ++.|..+|..||+.+.++..+.. +.
T Consensus 158 ~w~~~~~~~------~~~~~~~~~g~~~v~~~~-----------~~~v~~~d~~tG~~~w~~~~~~~-~~---------- 209 (276)
T 3no2_A 158 LNSVKLSGT------PFSSAFLDNGDCLVACGD-----------AHCFVQLNLESNRIVRRVNANDI-EG---------- 209 (276)
T ss_dssp EEEEECSSC------CCEEEECTTSCEEEECBT-----------TSEEEEECTTTCCEEEEEEGGGS-BS----------
T ss_pred EEEEECCCC------ccceeEcCCCCEEEEeCC-----------CCeEEEEeCcCCcEEEEecCCCC-CC----------
Confidence 999987633 357889999999998764 67899999999999999975431 00
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
..|..+.+++..|+|+++++.+
T Consensus 210 -----------------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 -----------------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -----------------CCCSEEEEEEECTTSCEEEEEE
T ss_pred -----------------ccccccccceEcCCCCEEEEec
Confidence 0123688999999999988873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=155.35 Aligned_cols=265 Identities=8% Similarity=0.034 Sum_probs=183.6
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
|.++.|+ ...+++.+.+++++.| .++.+..+.. +...+.+++|+|+|+.+++. ..+ ..+.+|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~----~~~------~~i~~~d~ 73 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLLD----VFE------GNIFKINP 73 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEEE----TTT------CEEEEECT
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEEE----CCC------CEEEEEeC
Confidence 3344444 5566777889999999 4778888876 44668999999999966652 344 68888998
Q ss_pred ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC----CcEEEeecCCCeEEEEEc----CCcEEEEEEcCCceE
Q 011970 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS----DKHVQEIKISPGIML 240 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D----~tiKlWdl~tg~~l~tl~----~~~V~~vafSpg~~l 240 (474)
..|++.. ++. .....|..++|+ |||+++++...+ +.|.+||.+++++...+. ...+.+++++|++.+
T Consensus 74 ~~~~~~~---~~~-~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 74 ETKEIKR---PFV-SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp TTCCEEE---EEE-CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred CCCcEEE---Eee-CCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence 8777521 221 123457789998 799998887776 789999998887654443 357999999986666
Q ss_pred EEEecCC----CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC-CceEEe------
Q 011970 241 LIFNRSS----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AELMEV------ 308 (474)
Q Consensus 241 a~~s~~s----~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t-g~~~~~------ 308 (474)
.++.... ....|..+|.++++...... +......++|+ +++..|.++ ..++.|.+||+.+ ++.+..
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~ 226 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence 6654321 12446666666666544333 23456788886 566667665 5789999999974 443321
Q ss_pred --ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCC--cCCCCeeEEEECCCCCEEEEEec
Q 011970 309 --SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 309 --l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~--~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+.++ ..+..++++++|+++++.. ++.|.+||.+|+.+.++..+... +. ..+.+++|+|||+.|..++.
T Consensus 227 ~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~-~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 227 YYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHM-LRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCS-CBCCEEEECTTSCEEEEEEE
T ss_pred EecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccc-cCcceEEECCCCCEEEEEeC
Confidence 2223 4788999999999999887 89999999999988888654320 00 01578999999877765443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=175.84 Aligned_cols=283 Identities=11% Similarity=0.062 Sum_probs=193.0
Q ss_pred ccEEEEeeCCCe---EEeeecc-----ccceeeE-----eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 98 RDIVFALAHSGV---CAAFSRE-----TNRRICF-----LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 98 ~~~las~s~dgt---iklW~~~-----tg~~l~~-----l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|+.++-...++. -.||-+. .|+.-.. |...++..+.+++|||||+.||.++..++.+ -.+++
T Consensus 118 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e-----~~~i~ 192 (741)
T 1yr2_A 118 GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD-----WRTVK 192 (741)
T ss_dssp TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS-----EEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc-----eEEEE
Confidence 777776665554 6677654 2332222 2222334789999999999999887664443 15799
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc--------------EEEeecCCCe----EEEEEcC
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI--------------YKVFDLKNYT----MLYSISD 226 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t--------------iKlWdl~tg~----~l~tl~~ 226 (474)
+||+.+|+... .... .. ....++|+ || +.|++++.|.. |++|++.++. +++...+
T Consensus 193 v~dl~tg~~~~---~~~~-~~-~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 193 FVGVADGKPLA---DELK-WV-KFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEETTTCCEEE---EEEE-EE-ESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEECCCCCCCC---ccCC-Cc-eeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 99999998632 1111 11 12368998 79 99999988765 8999998876 4444443
Q ss_pred C--cEEEEEEcCCc-eEEEEecCC--CCccEEEEecCCC--eEEEEEeecCcceeEEEEEecCCCeEEEEeC----CCcE
Q 011970 227 K--HVQEIKISPGI-MLLIFNRSS--SHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENL 295 (474)
Q Consensus 227 ~--~V~~vafSpg~-~la~~s~~s--~D~tIkLWdi~tG--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~----D~tI 295 (474)
+ .+.++.|||++ .|+..+... ....|.+||+.+| ++++.+..+...+....+ ++++.|+..+. +..|
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEE
Confidence 3 58999999855 566554332 2457999999988 425667655554544433 67888888764 4559
Q ss_pred EEEECCCC--ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcEEEEeccC-CCCcCCCCeeEEEECCC
Q 011970 296 QILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSD 369 (474)
Q Consensus 296 kIWDv~tg--~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~ll~tl~gH-~~~~~~~~v~svafSpD 369 (474)
.+||+.++ +...++.++...+..++|+ +++++++.+ |++.+||.+ +|+.++.+..+ ... |..++++||
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d 417 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS-----ASGLSGRPG 417 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE-----EEEEECCBT
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE-----EEEeecCCC
Confidence 99999985 4556666666667788887 778888888 998888865 58888888754 332 688999999
Q ss_pred CCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 370 QDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 370 g~~La-S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
|+.|+ +++. ....++|.+||+.+|+ ...|+.
T Consensus 418 ~~~l~~~~ss--------~~~P~~i~~~d~~tg~-~~~l~~ 449 (741)
T 1yr2_A 418 DRHAYLSFSS--------FTQPATVLALDPATAK-TTPWEP 449 (741)
T ss_dssp CSCEEEEEEE--------TTEEEEEEEEETTTTE-EEECSC
T ss_pred CCEEEEEEcC--------CCCCCEEEEEECCCCc-EEEEec
Confidence 98665 3332 2347899999999888 556654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-15 Score=161.00 Aligned_cols=321 Identities=12% Similarity=0.066 Sum_probs=219.3
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--cCCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G~~~~ 175 (474)
+.++++...++++.++|..|++.+.++..+ ..+..+.|||||++|.+++ .+ ..+.++|+. +++...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~----~d------g~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEc----CC------CeEEEEECCCCCCcEeE
Confidence 567788889999999999999999999753 3477999999999988765 34 478899985 666533
Q ss_pred ccceeeeccccCceEEEEeC---CCCeEEEEec-CCCcEEEeecCCCeEEEEEcC------------C-cEEEEEEcCCc
Q 011970 176 GFALFESESLKWPGFVEFDD---VNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD------------K-HVQEIKISPGI 238 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~---~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~~------------~-~V~~vafSpg~ 238 (474)
.++ . -..|..++||+ |||++|..+. .+++|.|+|..+.+.+.++.- . .|..|.+|+++
T Consensus 235 ~i~---~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 235 EIK---I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EEE---C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EEe---c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 211 1 12466899985 6998776655 569999999999999988752 1 58899999743
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccc-----
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT----- 311 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~----- 311 (474)
..+..+. ..++.|.++|..+.+.++.-. ........+.|. +++.+++++. .+++|.++|..+++++....-
T Consensus 310 ~~~vv~~-~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 310 PEFIVNV-KETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp SEEEEEE-TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CEEEEEe-cCCCeEEEEecCCCccceeeeeeccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 3333322 456889999988765444322 122334567776 6788887764 789999999999998765432
Q ss_pred cCCceEEEEEcCC-CcEEEEEc--CCcEEEEeCC--------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 011970 312 EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (474)
Q Consensus 312 h~~~v~sv~Fspd-g~llaS~s--D~tIklWd~~--------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~ 380 (474)
|...--.+ |.|+ |.+++++. +++|.++|.. .+.++++...... -.-|.++||+++|-....-.
T Consensus 388 hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 388 HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----SLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCSEEEEECTTC
T ss_pred CCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----CEEEEeCCCCCeEEEecCCC
Confidence 32222222 5786 77777775 7899999984 4678888865322 12477899999888754211
Q ss_pred CccccccCCCCeEEEEeCCCC------eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 381 PEDQWMEGSAGSINVSSILTG------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 381 ~~~~~~~s~DgtIklWdi~tG------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
||.. -.++|-++|+.+. ++...+.-- -|+.+++.-+.+..+.|+
T Consensus 462 ~~~~----~~~~v~v~d~~~~~~~g~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 511 (567)
T 1qks_A 462 PEAE----ISGSVAVFDIKAMTGDGSDPEFKTLPIA--------------------------EWAGITEGQPRVVQGEFN 511 (567)
T ss_dssp SSHH----HHTCEEEEEGGGCCCSSSCCCEEEECHH--------------------------HHHTCCSSCCEEEEEEEC
T ss_pred CCcc----cCceEEEEECCcccccccCCCcEEeccc--------------------------cccccCCCCcceEeeeEC
Confidence 1100 0368999999765 222333200 011111222378899999
Q ss_pred CCCCEEEEEc-----CCCcEEEcc
Q 011970 455 EERNEIYTGN-----RHGLVHVWS 473 (474)
Q Consensus 455 pDg~~LaSgs-----~DgtVklWd 473 (474)
|||++|+.+. .++.|-|.|
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCEEEEEeecCCCCCCcEEEEE
Confidence 9999988763 368887765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-14 Score=136.00 Aligned_cols=269 Identities=11% Similarity=0.051 Sum_probs=189.6
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ 206 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~ 206 (474)
+...+++|++.|+|..+++. ..+ ..+.+++.. |+. ..+.. .....|..++++ ++|.++++...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~----~~~------~~v~~~d~~-~~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 76 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQ----HKA------NMISCINLD-GKI----TEYPLPTPDAKVMCLTIS-SDGEVWFTENA 76 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEE----TTT------TEEEEECTT-CCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred cCCCccceEECCCCCEEEEe----cCC------CcEEEEcCC-CCe----EEecCCcccCceeeEEEC-CCCCEEEeCCC
Confidence 44679999999999977652 122 467777755 664 11221 123467789998 79999988877
Q ss_pred CCcEEEeecCCCeE-EEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE-eecCcceeEEEEEecC
Q 011970 207 DSIYKVFDLKNYTM-LYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLLHRNKKVDFIEQF 282 (474)
Q Consensus 207 D~tiKlWdl~tg~~-l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h~~~v~~V~F~~~~ 282 (474)
++.|..||.+ ++. ...+. ...+..+++.|++.|.++. ..+..|..||. +|+..... ..+......+++. ++
T Consensus 77 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~~ 151 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTE--MNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-SD 151 (299)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEe--cCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-CC
Confidence 8999999986 553 23333 3579999999866666653 23568999998 77765432 2334567788875 44
Q ss_pred CCeEEEE-eCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEE-eccCCCCcCC
Q 011970 283 NEKLLVK-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPD 358 (474)
Q Consensus 283 ~~~ll~~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~t-l~gH~~~~~~ 358 (474)
+ .+.++ ..++.|..||. +++.... +..+...+..+++.++|+++++.. ++.|.+||.+|+.... +..+..
T Consensus 152 g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~---- 225 (299)
T 2z2n_A 152 N-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA---- 225 (299)
T ss_dssp S-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC----
T ss_pred C-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC----
Confidence 4 55554 56789999998 8887654 444566789999999999999887 8899999997775432 222222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
.+.+++++|+|++.++... ++.|..||. +|+.... +.++..
T Consensus 226 -~~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~~~~------------------------- 267 (299)
T 2z2n_A 226 -RPHAITAGAGIDLWFTEWG-----------ANKIGRLTS-NNIIEEYPIQIKSA------------------------- 267 (299)
T ss_dssp -CEEEEEECSTTCEEEEETT-----------TTEEEEEET-TTEEEEEECSSSSC-------------------------
T ss_pred -CceeEEECCCCCEEEeccC-----------CceEEEECC-CCceEEEeCCCCCC-------------------------
Confidence 2689999999998887533 789999997 6764322 222221
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.+.++++ ++|+..++.+.++.+++
T Consensus 268 ---------~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 268 ---------EPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ---------CEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ---------ccceEEe-cCCCEEEEecCCcEEEE
Confidence 6889999 99999888776666665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.75 E-value=9e-17 Score=176.41 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=179.0
Q ss_pred eeCCCEEEEEEeecCCCccceeeeEEEEeEec-----cCCCCCccceee-----eccccCceEEEEeCCCCeEEEEecCC
Q 011970 138 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-----RGKPDSGFALFE-----SESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 138 spdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-----~G~~~~~~~lf~-----~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+|||+.++....++..+ ...||-.. .|+. ..|+. .++...+..++|| |||+.||+++.+
T Consensus 115 ~pdG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~---~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~~ 183 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMN-------QSQLLVRPADAPVGTKG---RVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQD 183 (741)
T ss_dssp EEETTEEEEEEECSSCS-------SCEEEEEETTSCTTCCC---EEEECGGGCC----EEEEEEEEC-TTSSEEEEEEEE
T ss_pred EEECCEEEEEEEcCCCe-------EEEEEEEcCCccCCCCC---EEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEcC
Confidence 49999998877655433 23345443 2332 12222 1111235578998 899999998754
Q ss_pred -----CcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEecCCC-----------CccEEEEecCCCeE--EEEEee
Q 011970 208 -----SIYKVFDLKNYTMLYS-ISDKHVQEIKISPGIMLLIFNRSSS-----------HVPLKILSIEDGTV--LKVFYH 268 (474)
Q Consensus 208 -----~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg~~la~~s~~s~-----------D~tIkLWdi~tG~~--L~tl~~ 268 (474)
.+|++||+++|+.+.. +....+.+++|||+..|+.+..... ...|++|++.+++. ...+..
T Consensus 184 ~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 184 GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred CCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 5799999999997643 2222235799998855555543221 22499999988862 223332
Q ss_pred --cCcceeEEEEEecCCCeEEEEeCC-----CcEEEEECCCC--ceEEeccccCCceEEEEEcCCCcEEEEEc-C----C
Q 011970 269 --LLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----R 334 (474)
Q Consensus 269 --h~~~v~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg--~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D----~ 334 (474)
+...+..+.|+ |+|.+|+..+.+ ..|.+||+.++ ++.+.+..+...+...++ |+|+.|+..+ + .
T Consensus 264 ~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 264 PELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp TTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTC
T ss_pred CCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCC
Confidence 33357888886 778888887643 48999999988 524444555555555544 7887776655 3 3
Q ss_pred cEEEEeCC-C-cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEecCCC
Q 011970 335 TVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATN 411 (474)
Q Consensus 335 tIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gH~ 411 (474)
.|.+||++ + ...+.+..|... .+.+++++ ++.+++++.. |+..+||.+. +|++++.+..+.
T Consensus 342 ~l~~~d~~~~~~~~~~l~~~~~~----~l~~~~~~-~~~lv~~~~~-----------dg~~~l~~~~~~g~~~~~l~~~~ 405 (741)
T 1yr2_A 342 KIVRVDLSGSTPRFDTVVPESKD----NLESVGIA-GNRLFASYIH-----------DAKSQVLAFDLDGKPAGAVSLPG 405 (741)
T ss_dssp EEEEEECSSSSCEEEEEECCCSS----EEEEEEEE-BTEEEEEEEE-----------TTEEEEEEEETTSCEEEECBCSS
T ss_pred EEEEEeCCCCccccEEEecCCCC----eEEEEEEE-CCEEEEEEEE-----------CCEEEEEEEeCCCCceeeccCCC
Confidence 49999996 3 333444333332 25678887 7788888876 8888888654 688888886542
Q ss_pred CCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EEcCCCcEEEccC
Q 011970 412 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGLVHVWSN 474 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La----Sgs~DgtVklWd~ 474 (474)
. ..|..++++||++.|+ |....++|.+||.
T Consensus 406 ~---------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 406 I---------------------------------GSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp S---------------------------------CEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred C---------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 1 1688999999999877 5556788999873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-16 Score=148.45 Aligned_cols=234 Identities=9% Similarity=-0.061 Sum_probs=166.5
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
+..+..|.. +.....+++|+|+|+.|+.++ ..+ ..+..|+...+ . ..|.. ....|..++|+ ++
T Consensus 17 ~~~~~~l~~-~~~~~eg~~~d~~g~~l~~~~---~~~------~~i~~~~~~~~-~----~~~~~-~~~~~~~l~~~-~d 79 (296)
T 3e5z_A 17 GAEARRLAD-GFTWTEGPVYVPARSAVIFSD---VRQ------NRTWAWSDDGQ-L----SPEMH-PSHHQNGHCLN-KQ 79 (296)
T ss_dssp TCCCEEEEC-CCSSEEEEEEEGGGTEEEEEE---GGG------TEEEEEETTSC-E----EEEES-SCSSEEEEEEC-TT
T ss_pred CCcEEEEec-CCccccCCeEeCCCCEEEEEe---CCC------CEEEEEECCCC-e----EEEEC-CCCCcceeeEC-CC
Confidence 444555554 446688999999999444333 233 57888886655 3 23433 34567789998 79
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEecC--C-------------CCccEEEEe
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKISPGIMLLIFNRS--S-------------SHVPLKILS 256 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~------~~~V~~vafSpg~~la~~s~~--s-------------~D~tIkLWd 256 (474)
|+++++...++.|.+||.++|++..... ...+.+++++|++.+.++.+. . ..+.|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 9999988888999999998998654332 135678999986666654220 0 012344444
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCce---EEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL---MEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~---~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
.. |+. ..+..+......++|+ |++..+++.+.++.|.+||+. +|++ .+++..+...+..++|.++|+++++.
T Consensus 160 ~~-g~~-~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PD-GTL-SAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TT-SCE-EEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CC-CCE-EEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 43 554 4445555667889987 667777555688999999997 6766 34444466678899999999999888
Q ss_pred CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEEec
Q 011970 333 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 378 (474)
Q Consensus 333 D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDg~~LaS~s~ 378 (474)
++.|.+||.+|+++..+..+.. +.+++| +|||+.|..++.
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TTEEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEET
T ss_pred CCeEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcC
Confidence 8899999999999999987765 368899 699998888764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-16 Score=146.35 Aligned_cols=230 Identities=10% Similarity=-0.011 Sum_probs=162.8
Q ss_pred CceEEEEeCCCCeEEE-EecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~La-S~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
.|..++|+ ++|++++ +.+.++.|.+||..++....... ...+..|+++|++.|.++.. ++.|.+||..++..
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQ- 99 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET---TTEEEEECTTCSCC-
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC---CCEEEEEeCCCceE-
Confidence 67799998 7999888 66788999999976655322111 24688999998666666532 57899999866543
Q ss_pred EEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 264 KVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
..+. ........+++. +++. +.++ ..++.|.+||..+.........+...+..+++.|+|+++++.. ++.|.+||
T Consensus 100 ~~~~~~~~~~p~~i~~~-~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVD-TQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp EECCCCSCSSEEEEEEC-TTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeeecCCcCCCcceEEC-CCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 4443 233567888886 4444 5554 5788999998776655444444556788999999999999987 89999999
Q ss_pred CCCcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 341 FRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 341 ~~G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
.++..... ...+... ...|+++|||.+.++... ++.|.+||..+.........+
T Consensus 178 ~~~~~~~~~~~~~~~~-----p~~i~~d~~g~l~v~~~~-----------~~~v~~~~~~~~~~~~~~~~~--------- 232 (270)
T 1rwi_B 178 AESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGSTTSTVLPFTG--------- 232 (270)
T ss_dssp TTTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TSCEEEECTTCSCCEECCCCS---------
T ss_pred cCCCceEeecccCCCC-----ceEEEECCCCCEEEEECC-----------CCcEEEEcCCCCcceeeccCC---------
Confidence 97543333 2233222 589999999998887654 789999997544332211111
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+..+.+++|+|||+.+++...+++|++++
T Consensus 233 -------------------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 -------------------------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -------------------------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -------------------------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 12689999999999999999999999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-15 Score=147.20 Aligned_cols=253 Identities=9% Similarity=-0.026 Sum_probs=185.9
Q ss_pred EEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 91 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 91 V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
...|.+. +.+.++...++++.+||..|++.+.++.. ....+.|+++|+|+..++ .. .+ ..+.++|..
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~lyv~-~~---~~------~~v~~iD~~ 113 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEKAYVT-QI---WD------YRIFIINPK 113 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTEEEEE-EB---SC------SEEEEEETT
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCeEEEE-EC---CC------CeEEEEECC
Confidence 4667777 55666666789999999999999999964 255899999999954443 21 23 588889988
Q ss_pred cCCCCCccceeee-ccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecC
Q 011970 170 RGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRS 246 (474)
Q Consensus 170 ~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~ 246 (474)
++++...+++-.. .....|..++++ +++++++.. .+++|.++|+++++.+.++. +.....++++|++.++..+..
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCC
T ss_pred CCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECC
Confidence 8876432221110 012256688884 788888765 58999999999999988886 445678999997777666432
Q ss_pred CC--------CccEEEEecCCCeEEEEEeec-CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccccCCc
Q 011970 247 SS--------HVPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEFMT 315 (474)
Q Consensus 247 s~--------D~tIkLWdi~tG~~L~tl~~h-~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~~~ 315 (474)
.. ...|.++|.+++++.+++.-. ......++|+ |+++.|.+... +|.+||+.+++.... ...+...
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~-~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN-GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC-TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe-cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 10 268999999999999888632 2367889987 56777777644 999999999987532 2223568
Q ss_pred eEEEEEcC-CCcEEEEE----c-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE
Q 011970 316 PSAFIFLY-ENQLFLTF----R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 316 v~sv~Fsp-dg~llaS~----s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
+..++++| +|+++++. . +++|.+||.+|+++++++--..+ +.++|
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P------~~~~~ 319 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIP------GAFCW 319 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESE------EEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCc------ceEEE
Confidence 99999998 89999998 6 89999999999999988743332 46666
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=130.16 Aligned_cols=272 Identities=8% Similarity=0.029 Sum_probs=188.0
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
..+..|++. |.+.++...++.+..|+.. |+........+...+.++++.|+|..+++.. .+ ..+..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~------~~i~~~ 83 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN----AA------NKIGRI 83 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET----TT------TEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC----CC------CeEEEE
Confidence 567788887 7777776668999999988 7655433222446799999999999776521 22 355566
Q ss_pred EeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE-EEc--CCcEEEEEEcCCceEEE
Q 011970 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKISPGIMLLI 242 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~-tl~--~~~V~~vafSpg~~la~ 242 (474)
+. .|+. ..+.. .....|..++|+ ++|+++++...++.|.+||. +++... .+. ...+..+++.|++.+.+
T Consensus 84 ~~-~g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 84 TK-KGII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CT-TSCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred CC-CCcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence 64 3543 22221 123467789997 79999998888899999998 666543 333 35789999998666666
Q ss_pred EecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEe-ccccCCceEEE
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEV-SRTEFMTPSAF 319 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv 319 (474)
+. ..++.|..||. +|+.... +..+......+++. +++. +.++ ..++.|.+||. +++.... +..+...+.++
T Consensus 157 ~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 157 TE--NQNNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp EE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred Ee--CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeE
Confidence 53 23468999998 8887653 33344566788875 4444 5554 56889999999 8876544 44466789999
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCCCcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
++.++|+++++.. ++.|..||.+|+...- +.++... +.++++ ++|++.++.+ .+.|..+|
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-----~~~i~~-~~g~l~v~~~------------~~~l~~~~ 292 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE-----PHGICF-DGETIWFAME------------CDKIGKLT 292 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCC-----EEEEEE-CSSCEEEEET------------TTEEEEEE
T ss_pred EECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCc-----cceEEe-cCCCEEEEec------------CCcEEEEE
Confidence 9999999999886 8999999998764332 3333332 689999 9999998753 34555667
Q ss_pred CCCCe
Q 011970 398 ILTGK 402 (474)
Q Consensus 398 i~tG~ 402 (474)
..+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 66553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-15 Score=141.17 Aligned_cols=231 Identities=12% Similarity=0.140 Sum_probs=167.2
Q ss_pred cccCceEEEEeCCCCeEEEE-------ecCCCcEEEeecCCCeEEEEE------cCCcEEEEEEcCC-ceEEEEecCCCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKISPG-IMLLIFNRSSSH 249 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS-------~s~D~tiKlWdl~tg~~l~tl------~~~~V~~vafSpg-~~la~~s~~s~D 249 (474)
.+..|..++|+ ++|+++++ +..++.|.+||+++++..... ....+..++++|+ +.|.++.. .
T Consensus 16 ~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---R 91 (314)
T ss_dssp CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---T
T ss_pred cCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---C
Confidence 36678899998 79998888 678899999999898864322 2257999999987 77666643 2
Q ss_pred ccEEEEecCCCeEEEE-Eee----cCcceeEEEEEecCCCeEEEE-eCC---------------CcEEEEECCCCceEEe
Q 011970 250 VPLKILSIEDGTVLKV-FYH----LLHRNKKVDFIEQFNEKLLVK-QEN---------------ENLQILDVRNAELMEV 308 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~t-l~~----h~~~v~~V~F~~~~~~~ll~~-~~D---------------~tIkIWDv~tg~~~~~ 308 (474)
..|.+||.+ |+.... ... ....+..+++. +++ .+.++ ..+ +.|..||.. ++....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 379999998 887543 221 12346788886 444 45554 444 567777766 665543
Q ss_pred ccccCCceEEEEEc----CCCc-EEEEEc-CCcEEEEeCC--Cc-----EEEEeccCC-CCcCCCCeeEEEECCCCCEEE
Q 011970 309 SRTEFMTPSAFIFL----YENQ-LFLTFR-NRTVAVWNFR--GE-----LVTSFEDHL-LWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 309 l~~h~~~v~sv~Fs----pdg~-llaS~s-D~tIklWd~~--G~-----ll~tl~gH~-~~~~~~~v~svafSpDg~~La 374 (474)
..+...+..++|+ |||+ ++++.. ++.|.+||.+ |+ .+..+.++. .. ...++++|||++.+
T Consensus 168 -~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 168 -DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-----ADGMDFDEDNNLLV 241 (314)
T ss_dssp -EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-----EEEEEEBTTCCEEE
T ss_pred -ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC-----CCceEECCCCCEEE
Confidence 3344567899999 9996 556656 8999999974 55 344555553 22 57899999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
+... ++.|.+||..+|+.+..+..+.. .+.+++|+
T Consensus 242 ~~~~-----------~~~i~~~d~~~g~~~~~~~~~~~----------------------------------~~~~i~~~ 276 (314)
T 1pjx_A 242 ANWG-----------SSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFK 276 (314)
T ss_dssp EEET-----------TTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEEC
T ss_pred EEcC-----------CCEEEEEcCCCCcEeEEEeCCCC----------------------------------CceeEEEC
Confidence 8654 78999999988998888876643 78999999
Q ss_pred CCCCEEE-EEcCCCcEEEcc
Q 011970 455 EERNEIY-TGNRHGLVHVWS 473 (474)
Q Consensus 455 pDg~~La-Sgs~DgtVklWd 473 (474)
|||+.|+ +...++.|..|+
T Consensus 277 ~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 277 PQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEe
Confidence 9999554 555677887775
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-15 Score=152.32 Aligned_cols=254 Identities=13% Similarity=0.130 Sum_probs=179.9
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+..|..|+|+ ++|+++++...++.|++||++++++...+.. .... ++|+| ++.|++.... ....|.+++..++.
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~-~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWE-GTHTVYVYMKASGW 205 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSS-TTCEEEEEEGGGTT
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecC-CCceEEEEEcCCCc
Confidence 46788899998 7999999998899999999998887665543 3334 99998 4555555332 12279999988877
Q ss_pred EEEEE----eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe----ccccCCc-eE-EEEEcC-CCcEEEE
Q 011970 262 VLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMT-PS-AFIFLY-ENQLFLT 330 (474)
Q Consensus 262 ~L~tl----~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~----l~~h~~~-v~-sv~Fsp-dg~llaS 330 (474)
.+..+ .........++|. |+++.|.+...++.|..||..+++.... ..++... +. .++|+| ++.++++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~-p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALD-ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEEC-TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEe-CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 66665 2234566788886 5567788876789999999998875443 3333322 34 899999 6889988
Q ss_pred Ec-CCcEEEEeCCCcEEEEeccCC---CCcC-------CCCeeEEEECCCCCEEEEEe-cCCCccccccCCCCeEEEEeC
Q 011970 331 FR-NRTVAVWNFRGELVTSFEDHL---LWHP-------DCNTNNIYITSDQDLIISYC-KAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 331 ~s-D~tIklWd~~G~ll~tl~gH~---~~~~-------~~~v~svafSpDg~~LaS~s-~~~~~~~~~~s~DgtIklWdi 398 (474)
-+ +++|..|+.+|+ +.++.++. .+.. -..-+.++|+|||++.++-+ . .+.|+.||+
T Consensus 285 d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------~~~I~~~~~ 352 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------GYCLRKLDI 352 (409)
T ss_dssp ETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------TCEEEEEET
T ss_pred eCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------CCEEEEEEC
Confidence 88 999999999888 55666654 0000 01147899999999888754 4 789999998
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+|+ +.++.++... .+. . +. ......+...+.|+++|||+.+++-..++.|+..+
T Consensus 353 ~~G~-v~~~~g~~~~-~g~-------------~----~g-~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 353 LDGY-VSTVAGQVDV-ASQ-------------I----DG-TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTTE-EEEEEECTTC-BSC-------------C----CB-STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCE-EEEEeCCCCC-CCc-------------C----CC-ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 8887 5667676320 000 0 00 00112245789999999999999999999988654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-14 Score=137.09 Aligned_cols=236 Identities=10% Similarity=0.046 Sum_probs=163.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
...+++++|+|+.++++. ..+ ..+.+++...+.. ..+.......|..++|+ ++|+++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~---~~~------~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE---GMY------GRVVKLATGSTGT----TVLPFNGLYQPQGLAVD-GAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEEC---SSS------CEEEEECC---------EECCCCSCCSCCCEEEC-TTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEcc---CCC------CcEEEecCCCccc----ceEeeCCcCCcceeEEC-CCCCEEEEcC-CCEE
Confidence 578999999999666221 233 4666676544332 11212234567789998 7999888777 8899
Q ss_pred EEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEE
Q 011970 211 KVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL 287 (474)
Q Consensus 211 KlWdl~tg~~l~tl~--~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll 287 (474)
.+||..+.... .+. . ..+..++++|++.+.++.. .++.|.+|+..++...............+++. +++. +.
T Consensus 90 ~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~-l~ 164 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADR--GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGN-VY 164 (270)
T ss_dssp EEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEG--GGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCC-EE
T ss_pred EEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEEC--CCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCC-EE
Confidence 99998765543 332 2 5799999998666666532 35689999866654433222333456788886 4454 55
Q ss_pred EE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEec-cCCCCcCCCCeeEE
Q 011970 288 VK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNI 364 (474)
Q Consensus 288 ~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~-gH~~~~~~~~v~sv 364 (474)
++ ..++.|.+||..++........+...+..+++.++|+++++.. ++.|.+||.+|.....+. .+... +.++
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----p~~i 239 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT-----PLAV 239 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC-----EEEE
T ss_pred EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC-----ceeE
Confidence 54 5688999999988876665555557899999999999999988 899999999766544333 23222 5899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 365 afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+|+|||+++++.+. +++|+++++...+
T Consensus 240 ~~~~~g~l~v~~~~-----------~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 240 AVDSDRTVYVADRG-----------NDRVVKLTSLEHH 266 (270)
T ss_dssp EECTTCCEEEEEGG-----------GTEEEEECCCGGG
T ss_pred EECCCCCEEEEECC-----------CCEEEEEcCCCcc
Confidence 99999999888765 8999999986544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-14 Score=135.18 Aligned_cols=224 Identities=11% Similarity=0.112 Sum_probs=160.0
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
..+.....|++.++.++.+...+++|..||.++++....-....+..++++|++.|+++. +..|.+||.++|+...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI----GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE----TTEEEEEETTTTEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE----CCeEEEEECCCCcEEE
Confidence 345557888855788888888999999999998876433235789999999866666653 3579999999987643
Q ss_pred EEee----cCcceeEEEEEecCCCeEEEEe--C--------CCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEE-
Q 011970 265 VFYH----LLHRNKKVDFIEQFNEKLLVKQ--E--------NENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLF- 328 (474)
Q Consensus 265 tl~~----h~~~v~~V~F~~~~~~~ll~~~--~--------D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~ll- 328 (474)
.... ...+...+++. ++|. +.++. . ...-+||.+.. ++... +..+...+..++|+|||+.|
T Consensus 88 ~~~~~~~~~~~~~~di~~d-~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVD-PAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEECCTTCSSEEEEEEEEC-TTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEE
T ss_pred EEecCCCCCCCCCCCEEEC-CCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEE
Confidence 3321 12346778876 4454 55543 2 24456776653 44433 34455678899999999855
Q ss_pred EEEc-CCcEEEEeC---CCcE-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 329 LTFR-NRTVAVWNF---RGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 329 aS~s-D~tIklWd~---~G~l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++.+ ++.|.+||+ +|++ +..+..+... ...+++.+||++.++... .+.|..||..
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~~G~lwva~~~-----------~~~v~~~d~~ 228 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-----PDGMCIDAEGKLWVACYN-----------GGRVIRLDPV 228 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-----EEEEEEBTTSCEEEEEET-----------TTEEEEECTT
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-----CCeeEECCCCCEEEEEcC-----------CCEEEEEcCC
Confidence 5666 899999986 3654 2334333222 478999999999888654 6889999998
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEEcC
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 465 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS-pDg~~LaSgs~ 465 (474)
||+++.++..+.. .+++++|+ ||+++|+-++.
T Consensus 229 tG~~~~~i~~p~~----------------------------------~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 229 TGKRLQTVKLPVD----------------------------------KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TCCEEEEEECSSS----------------------------------BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEEECCCC----------------------------------CceEEEEeCCCCCEEEEEcC
Confidence 9999999987753 79999999 99998875553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-15 Score=147.58 Aligned_cols=265 Identities=10% Similarity=0.078 Sum_probs=174.2
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee---eccccCceEEEEeCCCCeEEEEecC
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SESLKWPGFVEFDDVNGKVLTYSAQ 206 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~---~~~~~~~~~V~Fs~~nGk~LaS~s~ 206 (474)
.....|+++|+|+.+++...+. .+ .++||.+..|++. .++-+. .+++..|..|+|+ ++|++++..+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~-~~-------~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY-QP-------EMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG-CC-------SCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECH
T ss_pred CCcceEEECCCCCEEEEeCCCC-CC-------ceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCC
Confidence 5689999999999888754322 12 1445655556542 111111 1246788899998 78998886644
Q ss_pred -----CCcEEEeecCCCeEEEEEcC--------CcEEEEEEcC-CceEEEEecC-CCCccEEEEecCCCeEEEEEeecCc
Q 011970 207 -----DSIYKVFDLKNYTMLYSISD--------KHVQEIKISP-GIMLLIFNRS-SSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 207 -----D~tiKlWdl~tg~~l~tl~~--------~~V~~vafSp-g~~la~~s~~-s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
+..|.+||+++|+.+.++.- ..+.+|+|+| ++.+.++... +.+..|.+||+++|+..+.+.+|..
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 67899999999998776641 2468999996 5666555321 1467899999999998887765422
Q ss_pred cee-EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC------C
Q 011970 272 RNK-KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------G 343 (474)
Q Consensus 272 ~v~-~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~------G 343 (474)
... .+.|. +++..+...+.|++++.|.. .+..++|+|||+.|..+. ++. +||.++ +
T Consensus 167 ~~~~~~~~~-~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 167 IAPEDIDLV-IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TSCCSCCCE-ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred cccccccee-ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 111 13333 23444444667888877741 367899999998777665 553 566642 1
Q ss_pred c-----EEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 344 E-----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 344 ~-----ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
. ... ...++... ...+++++||.+.++... ++.|.+||..+|+...... ..
T Consensus 231 ~~~~~~~~~~~~~~g~~g~-----pdgia~d~~G~l~va~~~-----------~~~V~~~d~~~G~~~~~~~-~~----- 288 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPI-----CDGISIDKDHNIYVGDLA-----------HSAIGVITSADRAYKLLVT-DE----- 288 (343)
T ss_dssp TCCHHHHHTTCEEEEECCS-----CSCEEECTTCCEEEEEGG-----------GTEEEEEETTTTEEEEEEE-CG-----
T ss_pred CCChhhhhcceEecccCCC-----CceEEECCCCCEEEEccC-----------CCeEEEEECCCCCEEEEEE-CC-----
Confidence 1 000 12233332 357999999999998765 8899999976787533322 11
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
.+...++|+|+|||+.+++.+..+.+
T Consensus 289 ---------------------------~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 ---------------------------KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ---------------------------GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ---------------------------ceecCCeeEECCCCcEEEEeCccccc
Confidence 12378999999999999988865443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=141.90 Aligned_cols=180 Identities=9% Similarity=0.059 Sum_probs=142.5
Q ss_pred cCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-
Q 011970 235 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE- 312 (474)
Q Consensus 235 Spg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h- 312 (474)
+||..|++. +.|+.|.+||.+||+.+.++..+. ..+..++++ |+| ++++ +.++.|+.||. +|+.+..+..+
T Consensus 3 ~~~~~lv~~---~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-pdG-~ilv-s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGG---SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-KAG-EILF-SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEEC---TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-TTS-CEEE-ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCCcEEEee---CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-CCC-CEEE-eCCCCEEEECC-CCCEEEEEcCCC
Confidence 488877764 668999999999999999999664 367888887 444 5555 56889999998 89988776654
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCcEEEEeCCCcEEEEecc------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 313 FMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s--D~tIklWd~~G~ll~tl~g------H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
...+.++.++|||+++++.+ ++.|..+|.+|+.+.++.- +..+ .+.+++.+||++|++.+.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~-----~~~v~~~~~G~~lv~~~~------ 144 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQ-----FRQINKNKKGNYLVPLFA------ 144 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGS-----CSCCEECTTSCEEEEETT------
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccc-----ccCceECCCCCEEEEecC------
Confidence 35788999999999999976 4566667778999888762 2112 356789999999998765
Q ss_pred cccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 385 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
++.|..||.. |+.+.++..+. .++++.+.|+|++|++++
T Consensus 145 -----~~~v~~~d~~-G~~~w~~~~~~-----------------------------------~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 145 -----TSEVREIAPN-GQLLNSVKLSG-----------------------------------TPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp -----TTEEEEECTT-SCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEECB
T ss_pred -----CCEEEEECCC-CCEEEEEECCC-----------------------------------CccceeEcCCCCEEEEeC
Confidence 8999999986 99999997754 345678889999999888
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.++.|..+|
T Consensus 184 ~~~~v~~~d 192 (276)
T 3no2_A 184 DAHCFVQLN 192 (276)
T ss_dssp TTSEEEEEC
T ss_pred CCCeEEEEe
Confidence 888787665
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-12 Score=122.31 Aligned_cols=262 Identities=10% Similarity=0.047 Sum_probs=183.9
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
....++|++.++|...++.. .+ ..+.+++.. |+.. .+.. .....|..++++ ++|++.++...+
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~----~~------~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~ 82 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQH----KA------NKISSLDQS-GRIK----EFEVPTPDAKVMCLIVS-SLGDIWFTENGA 82 (300)
T ss_dssp TCCEEEEEECTTSCEEEEET----TT------TEEEEECTT-SCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETTT
T ss_pred CCCcceeeECCCCCEEEEcC----CC------CeEEEECCC-CceE----EEECCCCCCcceeEEEC-CCCCEEEEecCC
Confidence 45689999999999776521 22 466677755 6642 1221 123567789997 799998888778
Q ss_pred CcEEEeecCCCeEE-EEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCC
Q 011970 208 SIYKVFDLKNYTML-YSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 208 ~tiKlWdl~tg~~l-~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~ 283 (474)
+.|..+|.+ |+.. +.+. ...+..+++.|++.+.++.. .++.|..+|.. |+.... +.........+++. +++
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~g 157 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL--NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SDN 157 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTS
T ss_pred CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEcc--CCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CCC
Confidence 899999987 6653 3333 35799999998666666532 24679999987 776632 33334566788875 444
Q ss_pred CeEEEE-eCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEE-eccCCCCcCCC
Q 011970 284 EKLLVK-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDC 359 (474)
Q Consensus 284 ~~ll~~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~t-l~gH~~~~~~~ 359 (474)
. +.++ ..++.|..+|. +++.... +..+...+..+++.++|+++++.. ++.|.++|.+|+.... +..+..
T Consensus 158 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~----- 230 (300)
T 2qc5_A 158 A-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA----- 230 (300)
T ss_dssp S-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC-----
T ss_pred C-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC-----
Confidence 4 5555 46789999998 7776654 334566899999999999999887 7889999998876543 333322
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
.+.++++.|+|++.++... ++.|..+|. +|+.... +..+.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~--------------------------- 271 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWG-----------ANQIGRITN-DNTIQEYQLQTEN--------------------------- 271 (300)
T ss_dssp CEEEEEECSTTCEEEEETT-----------TTEEEEECT-TSCEEEEECCSTT---------------------------
T ss_pred CceEEEECCCCCEEEeccC-----------CCeEEEECC-CCcEEEEECCccC---------------------------
Confidence 2589999999998887543 689999997 6765422 22111
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEc
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
..+.+++++|||+..++..
T Consensus 272 -------~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 272 -------AEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp -------CCCCCEEECTTSCEEEECS
T ss_pred -------CccceeEeCCCCCEEEEcc
Confidence 1577899999999777766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-13 Score=144.09 Aligned_cols=258 Identities=13% Similarity=0.061 Sum_probs=183.6
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC--CCeEEEEEc-CCcEEEEEEc--
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS-DKHVQEIKIS-- 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~--tg~~l~tl~-~~~V~~vafS-- 235 (474)
.++.++|..+++....+ ..+ ..|..+.|| |||++|..++.|++|.+||+. +++.+.++. +..-..++||
T Consensus 177 ~~V~viD~~t~~v~~~i---~~g--~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVL---DTG--YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 250 (567)
T ss_dssp TEEEEEETTTCCEEEEE---ECS--SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CeEEEEECCCCeEEEEE---eCC--CCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccc
Confidence 68999999999874432 222 234589998 799999989999999999996 888888887 4567899999
Q ss_pred --C-CceEEEEecCCCCccEEEEecCCCeEEEEEeec-----------CcceeEEEEEecCCCeEEE-EeCCCcEEEEEC
Q 011970 236 --P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDFIEQFNEKLLV-KQENENLQILDV 300 (474)
Q Consensus 236 --p-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-----------~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv 300 (474)
| |.++++++. .+++|.++|..|+++++++.-. ..++..+.++ +++..+++ -.++++|.++|.
T Consensus 251 ~~pDGk~l~v~n~--~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s-~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 251 EGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEET
T ss_pred cCCCCCEEEEEEc--cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-CCCCEEEEEecCCCeEEEEec
Confidence 5 456666543 3578999999999999987621 1256677776 44444444 468899999999
Q ss_pred CCCceEEe-ccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCC-CEEE
Q 011970 301 RNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQ-DLII 374 (474)
Q Consensus 301 ~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg-~~La 374 (474)
.+.+.+.+ .......+..+.|+|||++|+.+. +++|.++|.. ++++.++.- -..+|+.-..+ .++|++ .+.+
T Consensus 328 ~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~ 405 (567)
T 1qks_A 328 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWA 405 (567)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTEEEEE
T ss_pred CCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCCcEEE
Confidence 87654332 122334577889999999887765 8899999994 999888764 33444422222 368984 4545
Q ss_pred EEecCCCccccccCCCCeEEEEeCCC-------CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccC
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 447 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~t-------G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (474)
+.. ..+++|-++|..+ -+.++++.+... .
T Consensus 406 t~~----------~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~----------------------------------g 441 (567)
T 1qks_A 406 TSH----------MGDDSVALIGTDPEGHPDNAWKILDSFPALGG----------------------------------G 441 (567)
T ss_dssp EEB----------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCS----------------------------------C
T ss_pred eCC----------CCCCeEEEecCCCCCCccccCEEEEEEecCCC----------------------------------C
Confidence 542 1378999999988 567888876532 1
Q ss_pred EEEEEEcCCCCEEEEEcC-------CCcEEEcc
Q 011970 448 ITSLFYDEERNEIYTGNR-------HGLVHVWS 473 (474)
Q Consensus 448 V~slafSpDg~~LaSgs~-------DgtVklWd 473 (474)
=.-+.++|||+.|+.... .++|.|.|
T Consensus 442 ~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 442 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 012678999999998763 35787776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-12 Score=128.55 Aligned_cols=266 Identities=7% Similarity=-0.060 Sum_probs=178.0
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEee------cCCCccceeeeEEEEeEeccCCCCCccceeee
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~------~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~ 182 (474)
+|.++|..+++.+.++..+. .. .++|||||+.|..+..+ |..+ .++.++|..+++..+.+++-..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~------~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRT------DYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCC------CeEEEEECCCCcEEEEEECCCc
Confidence 89999999999999987532 33 99999999998876532 1122 4778888887776544332100
Q ss_pred c---cccCceEEEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEE-EcCCcEEEEEEcC-CceEEEEecCCCCccEEEE
Q 011970 183 E---SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 183 ~---~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~t-l~~~~V~~vafSp-g~~la~~s~~s~D~tIkLW 255 (474)
. ...+|..++|| |||++|..+.. +.+|-++| ++++.+.+ +.-.. .+.+.| +.....+. ..|+.+.++
T Consensus 119 ~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~~~~~~~~~~~~~~~--~~dg~~~~v 192 (373)
T 2mad_H 119 PRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--CYHIHPGAPSTFYLL--CAQGGLAKT 192 (373)
T ss_pred cccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--eEEEEeCCCceEEEE--cCCCCEEEE
Confidence 0 12457789998 79999887764 57899999 99999888 75322 144554 33333222 347889999
Q ss_pred ecCCCeEEEEEe------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--EEecc-------cc---CCceE
Q 011970 256 SIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR-------TE---FMTPS 317 (474)
Q Consensus 256 di~tG~~L~tl~------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~~~l~-------~h---~~~v~ 317 (474)
|. +|+...... +.........|. ++++.++..+.++++.+.|+.++.. +..+. .. .....
T Consensus 193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 270 (373)
T 2mad_H 193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EC-CCcEEEEEeccccccCCcceeecceeE-ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence 99 988774322 111111224455 3456655555778999999976632 22211 00 11233
Q ss_pred EEEEcCCCcEEEEEc-----------CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccc
Q 011970 318 AFIFLYENQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQ 384 (474)
Q Consensus 318 sv~Fspdg~llaS~s-----------D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~ 384 (474)
.++|+||++.+-.+. +++|.+.|.. ++.++++..-.. .+.++|||||+ ++.++..
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~------p~~i~~s~Dg~~~l~v~~~------ 338 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD------VDAISVAQDGGPDLYALSA------ 338 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC------cCeEEECCCCCeEEEEEcC------
Confidence 478899977665543 2479999995 999898864332 36899999999 7777542
Q ss_pred cccCCCCeEEEEeCCCCeEEEEe
Q 011970 385 WMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.+++|-++|+.|++.++++
T Consensus 339 ----~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 339 ----GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ----CCCeEEEEECCCCCEEeee
Confidence 2799999999999999985
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-12 Score=128.78 Aligned_cols=283 Identities=9% Similarity=0.056 Sum_probs=179.0
Q ss_pred EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------
Q 011970 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---------- 205 (474)
Q Consensus 136 ~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s---------- 205 (474)
...|+++.+-.+... ..+ .+. ++.++|..+++....++ .+ ..+ .++|| |||+.|..+.
T Consensus 27 ~~~~~~~~~yv~~~~-~~~--~~~--~v~v~D~~t~~~~~~i~---~g--~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 27 APGADGRRSYINLPA-HHS--AII--QQWVLDAGSGSILGHVN---GG--FLP-NPVAA-HSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCCEEEEeCCc-ccC--Ccc--EEEEEECCCCeEEEEec---CC--CCC-CeEEC-CCCCEEEEEeccccccccCC
Confidence 345777755442210 122 222 77888888888643222 12 234 79998 7999887765
Q ss_pred CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE-EeecCccee
Q 011970 206 QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNK 274 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~ 274 (474)
.+++|-+||+++++.+.++.- ..-..++||| |.+|++++. ..+..|.++| ++|+.+.+ +.-. .
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~-~~~~~v~viD-~t~~~~~~~i~~~----~ 168 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVV-QGGSSDDQLLSSP----T 168 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec-CCCCeEEEEE-CCCCEEeEEcCCC----c
Confidence 368899999999998887752 2345799998 555555532 2246799999 99999988 6521 1
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-----ccCCce-EEEEEcCCCcEEEEE-cCCcEEEEeCC-C--c
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-----TEFMTP-SAFIFLYENQLFLTF-RNRTVAVWNFR-G--E 344 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-----~h~~~v-~sv~Fspdg~llaS~-sD~tIklWd~~-G--~ 344 (474)
.+.+.+..+..+++.+.|+.+..+|. +++...... .....+ ....|++++..++-. ..++|.+.|+. + +
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 24555433344455678999999999 887763311 111111 223566665444333 47889999985 3 2
Q ss_pred EEEEecc------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 345 LVTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 345 ll~tl~g------H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
.+.+++- ...|.++. ...++|+|||+.|..+.....+.. -...+++|-+.|+.|++.+++|..-.
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~-~~~~~~~V~VID~~t~~vv~~i~~g~------- 318 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLGH------- 318 (373)
T ss_pred EeeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCccc-ccCCCCeEEEEECCCCEEEEEEECCC-------
Confidence 3344431 11222221 244889999998776543100000 00124689999999999999995432
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEc-CCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs-~DgtVklWd~ 474 (474)
..++++|+|||+ .||+++ .+++|.++|.
T Consensus 319 ----------------------------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 319 ----------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ----------------------------CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 467899999999 899998 5999999973
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-13 Score=147.08 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=171.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEe-ecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~-~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~ 206 (474)
+...+.++.|||||+.||-+.. .|++. .+++++|+.+|+... . .....+ ...++|+ ||+.|++++.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~------~~i~v~dl~tg~~~~---~-~~~~~k-~~~~~Ws--Dg~~l~y~~~ 193 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDW------REIHLMDVESKQPLE---T-PLKDVK-FSGISWL--GNEGFFYSSY 193 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCE------EEEEEEETTTCSEEE---E-EEEEEE-SCCCEEE--TTTEEEEEES
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCce------EEEEEEECCCCCCCc---c-ccCCce-eccEEEe--CCCEEEEEEe
Confidence 4457899999999999886554 34455 689999999998622 1 111111 1368897 8999999998
Q ss_pred CCc-------------EEEeecCCCe----EEEEEcC---CcEEEEEEcCCc-eEEEEecC-CCCccEEEEecCCCe-EE
Q 011970 207 DSI-------------YKVFDLKNYT----MLYSISD---KHVQEIKISPGI-MLLIFNRS-SSHVPLKILSIEDGT-VL 263 (474)
Q Consensus 207 D~t-------------iKlWdl~tg~----~l~tl~~---~~V~~vafSpg~-~la~~s~~-s~D~tIkLWdi~tG~-~L 263 (474)
|.+ |++|++.++. +++...+ ..+.++.+||++ .|+..... .....|.+||+.+++ .+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 854 9999998765 4555444 357899999855 45444322 233579999998874 45
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-C---CCcEEEEECCCCce--EEeccccCCceEEEEEcCCCcEEEEEc--CC-
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-E---NENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR--NR- 334 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~---D~tIkIWDv~tg~~--~~~l~~h~~~v~sv~Fspdg~llaS~s--D~- 334 (474)
+.+..+......+ +. +++++|+..+ . ...|..+|+.++++ .+.+..|...+. .|+|+++.|+... |+
T Consensus 274 ~~l~~~~~~~~~~-~~-~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VD-NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp EEEECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred EEEeCCCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 6676655555554 33 5578877754 3 36799999998875 344555655555 8899998877665 55
Q ss_pred -cEEEEeCCCcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 335 -TVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 335 -tIklWd~~G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
.|++||++|...+.+.- +... +..+.++||++.|+....+ ...-++|..||+.+|+. ..|...
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~~~-----~~~~~~~~d~~~l~~~~ss-------~~tP~~l~~~d~~~g~~-~~l~~~ 414 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGLGS-----VSGFNGKHDDPALYFGFEN-------YAQPPTLYRFEPKSGAI-SLYRAS 414 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSSSE-----EEECCCCTTCSCEEEEEEC-------SSSCCEEEEECTTTCCE-EEEECC
T ss_pred eEEEEEECCCCeeEEeecCCCce-----EEeeecCCCCCEEEEEecC-------CCCCCEEEEEECCCCeE-EEEEeC
Confidence 78999998777666642 2222 5677888998877654331 11248999999988874 455443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=124.51 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=158.6
Q ss_pred EEEEEee--ccEEEE-------eeCCCeEEeeeccccceeeEeec---CCCceEEEEEEeeC-CCEEEEEEeecCCCccc
Q 011970 91 VIEIVAA--RDIVFA-------LAHSGVCAAFSRETNRRICFLNV---SPDEVIRSLFYNKN-NDSLITVSVYASDNFSS 157 (474)
Q Consensus 91 V~~i~~s--~~~las-------~s~dgtiklW~~~tg~~l~~l~g---~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~ 157 (474)
...+++. +.++++ ...++.+..|+..+|+....... .+...+.+++++|+ |+.+++.. .
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~----~---- 91 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----R---- 91 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----T----
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC----C----
Confidence 3566665 667777 67899999999888886543320 12356899999999 77555421 2
Q ss_pred eeeeEEEEeEeccCCCCCc-cceeeeccccCceEEEEeCCCCeEEEEecCC---------------CcEEEeecCCCeEE
Q 011970 158 LKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKNYTML 221 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---------------~tiKlWdl~tg~~l 221 (474)
..+.+++.. |++..- ...........|..++|+ ++|+++++...+ +.|..||.+ ++..
T Consensus 92 ---~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 92 ---LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp ---TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred ---CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 256677866 775211 010111123457789998 799988877655 456667765 6654
Q ss_pred EEEc-CCcEEEEEEc----CCc-eEEEEecCCCCccEEEEecC-CCeE-----EEEEeecC-cceeEEEEEecCCCeEEE
Q 011970 222 YSIS-DKHVQEIKIS----PGI-MLLIFNRSSSHVPLKILSIE-DGTV-----LKVFYHLL-HRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 222 ~tl~-~~~V~~vafS----pg~-~la~~s~~s~D~tIkLWdi~-tG~~-----L~tl~~h~-~~v~~V~F~~~~~~~ll~ 288 (474)
.... ......++|+ |++ .|.++. ..++.|.+||+. +|+. +..+.++. .....+++. +++..+++
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~ 242 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVA 242 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCCEEEE
Confidence 4333 2457889999 976 455553 335789999987 6763 33344333 456778876 44544444
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~ 342 (474)
...++.|.+||..+++.+..+..+...+.+++|+|||+ ++++.. ++.|..+++.
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 56789999999998888777666777899999999999 666766 7899999974
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-11 Score=116.13 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=167.3
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE-EEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~-tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
...|..++++ ++|++.++...++.|.+||.+ ++... .+. ...+..|++.|++.+.++. ..++.|..+|.. |+
T Consensus 19 ~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 19 DSGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTE--NGANKIGKLSKK-GG 93 (300)
T ss_dssp TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECTT-SC
T ss_pred CCCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEe--cCCCeEEEECCC-CC
Confidence 3467789997 799999988888999999988 66543 333 2579999999866666653 335679999987 77
Q ss_pred EEEEEe--ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 262 VLKVFY--HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 262 ~L~tl~--~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
.. .+. ........+++. ++ +.+.++ ..++.|..+|.. ++.... +......+..+++.++|+++++.. ++.|
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~-~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEG-LN-GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EE-EEECSSTTCCEEEEEEC-ST-TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred eE-EecCCCCCCCCccceEC-CC-CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 63 333 233567888875 44 455554 458899999987 776643 344556899999999999999887 8899
Q ss_pred EEEeCCCcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-ecCCCCCC
Q 011970 337 AVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSP 414 (474)
Q Consensus 337 klWd~~G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gH~~~~ 414 (474)
..+|.+|+.... +..+.. ....+++.|+|++.++... .+.|.++|. +|+.... +..+.
T Consensus 170 ~~~~~~g~~~~~~~~~~~~-----~~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~--- 229 (300)
T 2qc5_A 170 GRITNTGKLEEYPLPTNAA-----APVGITSGNDGALWFVEIM-----------GNKIGRITT-TGEISEYDIPTPN--- 229 (300)
T ss_dssp EEECTTCCEEEEECSSTTC-----CEEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT---
T ss_pred EEECCCCcEEEeeCCCCCC-----CcceEEECCCCCEEEEccC-----------CCEEEEEcC-CCcEEEEECCCCC---
Confidence 999998876542 222222 2689999999999887543 678999997 7776543 22222
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..+.+++++|+|+..++...++.|..++
T Consensus 230 -------------------------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 230 -------------------------------ARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp -------------------------------CCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred -------------------------------CCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 1688999999999888877778888775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-12 Score=124.96 Aligned_cols=220 Identities=9% Similarity=0.025 Sum_probs=152.0
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
.+....|++.++.++.++..++.|.+||.++++....-....|.+++++|++.++++.. ..|.+||.++|+.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEe
Confidence 34468898434777888888999999999988754322356899999998666666542 34999999999864332
Q ss_pred ee---c-CcceeEEEEEecCCCeEEEEeC-----CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE-EEEc-CCc
Q 011970 267 YH---L-LHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRT 335 (474)
Q Consensus 267 ~~---h-~~~v~~V~F~~~~~~~ll~~~~-----D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll-aS~s-D~t 335 (474)
.. + ...+..+.+. ++|. +.++.. ..+..||.+.+++.... ..+...+..++|+|||+.| ++.+ ++.
T Consensus 126 ~~~~~~~~~~~~~i~~d-~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMH-PSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKL-FADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEEC-TTSC-EEEEEEETTCCTTCEEEEEEETTEEEEE-EEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEEC-CCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1 2356788876 4454 555432 13445554446665443 3344567899999999855 5555 889
Q ss_pred EEEEeCC---C-c-----EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 336 VAVWNFR---G-E-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 336 IklWd~~---G-~-----ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|.+||++ | + .+..+.++... ...+++.+||.+.++... ++.|..||. +|+.+.+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~-----p~gi~~d~~G~lwva~~~-----------~~~v~~~d~-~g~~~~~ 265 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYDT-DGNHIAR 265 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEECT-TCCEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCC-----CCeeEECCCCCEEEEEeC-----------CCEEEEECC-CCCEEEE
Confidence 9999973 6 3 23344433222 478999999999887643 688999997 8999888
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEEc
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGN 464 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS-pDg~~LaSgs 464 (474)
+..+.. .+++++|+ ||++.|+.++
T Consensus 266 i~~~~~----------------------------------~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 266 YEVPGK----------------------------------QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECSCS----------------------------------BEEEEEEESTTSCEEEEEE
T ss_pred EECCCC----------------------------------CcEEEEEecCCCCEEEEEe
Confidence 876653 79999999 9998876544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-12 Score=133.24 Aligned_cols=282 Identities=11% Similarity=0.103 Sum_probs=186.0
Q ss_pred ccEEEEeeC-----CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeec------CCCccceeeeEEEEe
Q 011970 98 RDIVFALAH-----SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYA------SDNFSSLKCRSTKIE 166 (474)
Q Consensus 98 ~~~las~s~-----dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~------s~d~s~Lk~~~~~iw 166 (474)
+..++.... ++++.+.|..|++.+.++..+. .. . +++||||+.|..++.+. ..+ ..+.++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~------~~Vsvi 114 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP-N-PVVADDGSFIAHASTVFSRIARGERT------DYVEVF 114 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEE------EEEEEE
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC-c-EEECCCCCEEEEEcccccccccCCCC------CEEEEE
Confidence 455555544 6899999999999999998644 44 4 99999999987766432 122 579999
Q ss_pred EeccCCCCCccceeee---ccccCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEcCCcEEEEEEcCC-ceE
Q 011970 167 YIRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKISPG-IML 240 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg-~~l 240 (474)
|..+++....+++-.. ....+|..++|+ |||++|..+. .+++|-|+|+++++.+.++.-... ...+..| ..+
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTF 192 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCcee
Confidence 9999887554332110 012367789998 7999776654 378999999999999999863222 1222222 233
Q ss_pred EEEecCCCCccEEEEecCC-CeEEEEEeecC----cce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCce--EEecc--
Q 011970 241 LIFNRSSSHVPLKILSIED-GTVLKVFYHLL----HRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR-- 310 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~----~~v-~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~~~l~-- 310 (474)
++. +.|+.+-+.++.+ |+...+...+. ..+ ..+.|..+ +++++..+.+++|.+.|+.++.. +....
T Consensus 193 ~~~---~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~-dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 193 FMH---CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp EEE---ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred EEE---CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC-CCcEEEEeCCCEEEEEECCCCcceeecceecc
Confidence 333 2256666777765 66644332221 112 12455534 45777777789999999987653 21110
Q ss_pred -------c-cCCceEEEEEcCCCcEEEEEc-C----------CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 311 -------T-EFMTPSAFIFLYENQLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 311 -------~-h~~~v~sv~Fspdg~llaS~s-D----------~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
+ .......++++|+++.+-... + ++|-+-|+ +++.++++.--.. +++|+|||||
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~------~~~lavs~D~ 342 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE------IDSINVSQDE 342 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECSSS
T ss_pred ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC------cceEEECCCC
Confidence 0 011222467788877766543 1 47889999 4999988763221 5799999999
Q ss_pred C-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 371 D-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 371 ~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+ +|.+.+. .+++|-+.|..||+.++++..-
T Consensus 343 ~~~ly~tn~----------~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 343 KPLLYALST----------GDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp SCEEEEEET----------TTTEEEEEETTTCCEEEEECCC
T ss_pred CeEEEEEcC----------CCCeEEEEECCCCcEEEEecCC
Confidence 7 6666543 3899999999999999999653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=148.25 Aligned_cols=234 Identities=9% Similarity=0.091 Sum_probs=156.4
Q ss_pred CceEEEEeCCCCeEEEE-----ecCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEecCC----------CCc
Q 011970 187 WPGFVEFDDVNGKVLTY-----SAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPGIMLLIFNRSS----------SHV 250 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS-----~s~D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg~~la~~s~~s----------~D~ 250 (474)
.+..++|| |||+.||+ |+.+.+|+|||+++|+.+.. +......+++||+|..|+...... ...
T Consensus 130 ~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 130 ALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCc
Confidence 44578998 79999995 44457999999999996543 322223578899555566554321 113
Q ss_pred cEEEEecCCCe----EEEEEee-cCcceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCc-eEEeccccCCceEEEE
Q 011970 251 PLKILSIEDGT----VLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE-LMEVSRTEFMTPSAFI 320 (474)
Q Consensus 251 tIkLWdi~tG~----~L~tl~~-h~~~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~ 320 (474)
.|++|++.+++ ++..... |......+.|+ |++.+|++.. .+..|.+||+.+++ ..+.+..+........
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~ 287 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLV 287 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEE
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEE
Confidence 49999998875 3433333 44456788886 7788887653 23589999998874 3445556666666664
Q ss_pred EcCCCcEEEEEc-C---CcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--
Q 011970 321 FLYENQLFLTFR-N---RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-- 391 (474)
Q Consensus 321 Fspdg~llaS~s-D---~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg-- 391 (474)
.++++++++..+ | ..|.+||++ +++ .++|..|... +. .|+|+|+.|+.... .++
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~----------~~g~~ 350 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYM----------VDATA 350 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEE----------ETTEE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEE----------ECCee
Confidence 455666666665 4 578899995 554 4677777664 23 89999999887664 133
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC----C
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----G 467 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D----g 467 (474)
.|++||+. |+.+..+.-... ..|..+.++||++.|+-...+ +
T Consensus 351 ~l~~~d~~-g~~~~~l~~p~~---------------------------------~~~~~~~~~~d~~~l~~~~ss~~tP~ 396 (693)
T 3iuj_A 351 RVEQFDYE-GKRVREVALPGL---------------------------------GSVSGFNGKHDDPALYFGFENYAQPP 396 (693)
T ss_dssp EEEEECTT-SCEEEEECCSSS---------------------------------SEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred EEEEEECC-CCeeEEeecCCC---------------------------------ceEEeeecCCCCCEEEEEecCCCCCC
Confidence 79999986 555566642211 157778889999887765544 6
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
+|.+||
T Consensus 397 ~l~~~d 402 (693)
T 3iuj_A 397 TLYRFE 402 (693)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 777776
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=142.27 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=183.3
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~----------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+++|+.++.++.+..+|..||+.+=........ .-+++++ ++..|+.++ .| ..+..+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~----~d------g~l~Al 136 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGV----LD------GRLEAI 136 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TT------SEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEc----cC------CEEEEE
Confidence 4788999999999999999999998776542211 0122333 355666543 34 467778
Q ss_pred EeccCCCCCccceeeeccc---cCceEEEEeC--CCCeEEEEec-----CCCcEEEeecCCCeEEEEEcC----------
Q 011970 167 YIRRGKPDSGFALFESESL---KWPGFVEFDD--VNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---------- 226 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~---~~~~~V~Fs~--~nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~---------- 226 (474)
|..+|+. +|..... .....+..+| .+|++++..+ .|+.|..||++||+++.++..
T Consensus 137 Da~TG~~-----~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 137 DAKTGQR-----AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPE 211 (689)
T ss_dssp ETTTCCE-----EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCC
T ss_pred ECCCCCE-----eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccc
Confidence 8889986 3443211 0001111110 1687777544 379999999999999877641
Q ss_pred ----------------------CcEE-EEEEcC-CceEEEEecCC------------CC----ccEEEEecCCCeEEEEE
Q 011970 227 ----------------------KHVQ-EIKISP-GIMLLIFNRSS------------SH----VPLKILSIEDGTVLKVF 266 (474)
Q Consensus 227 ----------------------~~V~-~vafSp-g~~la~~s~~s------------~D----~tIkLWdi~tG~~L~tl 266 (474)
..+| .++++| ++++.+....+ +| ..|.-||.+||+.+-.+
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~ 291 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY 291 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence 0122 578887 56655543211 01 14999999999999988
Q ss_pred eecCccee------EEEEE--ecCCC---eEEEEeCCCcEEEEECCCCceEEecc-ccCCce------------------
Q 011970 267 YHLLHRNK------KVDFI--EQFNE---KLLVKQENENLQILDVRNAELMEVSR-TEFMTP------------------ 316 (474)
Q Consensus 267 ~~h~~~v~------~V~F~--~~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~~~v------------------ 316 (474)
+...+..+ .+.+. +.++. .+++++.|+.+.++|.++|+++.... .+..+.
T Consensus 292 ~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 292 QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 74212111 11111 12232 46667899999999999999873210 000000
Q ss_pred --------------------EEEEEcCCCcEEEEEc--------------------------------------------
Q 011970 317 --------------------SAFIFLYENQLFLTFR-------------------------------------------- 332 (474)
Q Consensus 317 --------------------~sv~Fspdg~llaS~s-------------------------------------------- 332 (474)
..++|+|+.+++....
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 1267899888877652
Q ss_pred --CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 333 --NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 333 --D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
+++|..||+ +|+.+-++..+..+ +.-.++..|.+++.++. ||.|+.||..||+.|.+++.
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~-----------dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSA-----------DGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEEC
T ss_pred CcceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECC-----------CCcEEEEECCCCccceeeeC
Confidence 278999999 59999888877643 33456778889998876 99999999999999999976
Q ss_pred CC
Q 011970 410 TN 411 (474)
Q Consensus 410 H~ 411 (474)
..
T Consensus 515 ~~ 516 (689)
T 1yiq_A 515 AS 516 (689)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=136.36 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=154.4
Q ss_pred cCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEc---------CCcEEEEEEcCCceEEEEecCC---CCcc
Q 011970 186 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS---------DKHVQEIKISPGIMLLIFNRSS---SHVP 251 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~---------~~~V~~vafSpg~~la~~s~~s---~D~t 251 (474)
.+|..|+|+ ++|+++++.. .++.++||.+.+|++. .+. -..+..|+|+|++.|.+..... .+..
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 578899998 7999999864 2344788887677643 332 1469999999977777664220 1357
Q ss_pred EEEEecCCCeEEEEEeec------CcceeEEEEEecCCCeEEEE-e---CCCcEEEEECCCCceEEeccccCCc-eEEEE
Q 011970 252 LKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFMT-PSAFI 320 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h------~~~v~~V~F~~~~~~~ll~~-~---~D~tIkIWDv~tg~~~~~l~~h~~~-v~sv~ 320 (474)
|.+||+++|++++++... ......|+|. ++++.+.++ . .++.|.+||+.+++..+++.+|... ...+.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd-~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD-LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE-TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEe-cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 999999999998888632 1245788886 445566554 4 6899999999999998888765322 21256
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+++|+.|.+.+ |++++.|.. .++.|+|||||++|..+.. ++. +||.+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~------------------~~~gia~s~dg~~ly~~~~-----------~~~-~l~~~~ 223 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL------------------GVNGIVLDAENEWLYLSPM-----------HST-SMYRIK 223 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC------------------CEEEEEECTTSCEEEEEES-----------SCS-EEEEEE
T ss_pred eeECCEEEEeccCCCceeceec------------------ccceeEeccCCCEEEEEeC-----------CCC-eEEEEE
Confidence 778999888877 888877751 1578999999998887654 332 566653
Q ss_pred CCeE----------EE--EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 400 TGKC----------LA--KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 400 tG~c----------l~--tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
+... .. +..++.. ....+++++||+.+++...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g----------------------------------~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKP----------------------------------ICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECC----------------------------------SCSCEEECTTCCEEEEEGGGT
T ss_pred HHHhcCCCCChhhhhcceEecccCC----------------------------------CCceEEECCCCCEEEEccCCC
Confidence 2110 00 0011111 234689999999999999999
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.|.+||
T Consensus 270 ~V~~~d 275 (343)
T 2qe8_A 270 AIGVIT 275 (343)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999997
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-12 Score=122.05 Aligned_cols=225 Identities=9% Similarity=0.095 Sum_probs=156.5
Q ss_pred ccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~-l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
..|+....|+ |+|+ ++.++..++.|..|+. +|+. .+......+..++++|++.|+++. ..+..|.+|+.. |+.
T Consensus 44 ~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~--~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 44 ATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCE--HGRRAITRSDAD-GQA 118 (305)
T ss_dssp CSSEEEEEEE-GGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEE--TTTTEEEEECTT-SCE
T ss_pred CcCccCCeEe-CCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEE--CCCCEEEEECCC-CCE
Confidence 5677789998 6887 7788888999999998 5553 334446779999999877777664 234679999975 775
Q ss_pred EEEEeec----CcceeEEEEEecCCCeEEE----EeC-------------CCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 263 LKVFYHL----LHRNKKVDFIEQFNEKLLV----KQE-------------NENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 263 L~tl~~h----~~~v~~V~F~~~~~~~ll~----~~~-------------D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
....... ......+++. ++|..+++ +.. .+.|..+|..+++..... +...+..++|
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF 195 (305)
T ss_dssp EEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred EEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence 3322211 1234668876 44544443 221 356788888888876654 5567889999
Q ss_pred cCCCcEEEEEc-C------CcEEEEeCC-CcEEE---EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 322 LYENQLFLTFR-N------RTVAVWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 322 spdg~llaS~s-D------~tIklWd~~-G~ll~---tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
+|||+.|..+. + +.|.+||+. +. +. .+..-.... ...+++.+||++.++. . +
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~----pdgi~~d~~G~lwv~~-~-----------~ 258 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL----PDGFCVDRGGWLWSSS-G-----------T 258 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC----CCSEEECTTSCEEECC-S-----------S
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC----CCeEEECCCCCEEEec-C-----------C
Confidence 99999655544 4 789999985 33 32 222111111 3579999999977753 2 4
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 391 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
.|.+||. +|+.+.++..+. .+.+++|+||++.|+.++.++..+
T Consensus 259 -gv~~~~~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 259 -GVCVFDS-DGQLLGHIPTPG-----------------------------------TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -EEEEECT-TSCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -cEEEECC-CCCEEEEEECCC-----------------------------------ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 4999996 799999887654 467899999999999988888776
Q ss_pred E
Q 011970 471 V 471 (474)
Q Consensus 471 l 471 (474)
+
T Consensus 302 ~ 302 (305)
T 3dr2_A 302 L 302 (305)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-11 Score=128.05 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=162.0
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~- 208 (474)
+....|+++|+|+.+++- ..+ +.++.++...|++.. +... ...+. ++|+ ++|+.|..+..++
T Consensus 131 ~~P~~la~d~~g~lyv~d----~~~------~~I~~id~~~g~~~~---~~~~--~~~~~-ia~~-~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQ----RDD------PRVRLISVDDNKVTT---VHPG--FKGGK-PAVT-KDKQRVYSIGWEGT 193 (409)
T ss_dssp CCEEEEEECSTTEEEEEE----TTT------TEEEEEETTTTEEEE---EEET--CCBCB-CEEC-TTSSEEEEEBSSTT
T ss_pred CCceEEEEeCCCCEEEEe----cCC------CcEEEEECCCCEEEE---eecc--CCCCc-eeEe-cCCCcEEEEecCCC
Confidence 357899999999966542 234 588889977777521 2222 33455 9998 7998888777766
Q ss_pred -cEEEeecCCCeEEEEE------cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE----EeecCcce-e-
Q 011970 209 -IYKVFDLKNYTMLYSI------SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV----FYHLLHRN-K- 274 (474)
Q Consensus 209 -tiKlWdl~tg~~l~tl------~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t----l~~h~~~v-~- 274 (474)
.|.+||..++.....+ ....+++++|+| ++.|.+.. .++.|..||.++++.... ..++.... .
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d---~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD---SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC---TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE---CCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 7889998776655555 346788999998 78777752 257899999988874332 22232333 3
Q ss_pred EEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecccc---------------CCceEEEEEcCCCcEEEEEc--CCcE
Q 011970 275 KVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTE---------------FMTPSAFIFLYENQLFLTFR--NRTV 336 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h---------------~~~v~sv~Fspdg~llaS~s--D~tI 336 (474)
.++|. |+++.|.++ ..++.|+.||... + +.++.++ ...+..++|+|+|+++++-+ ++.|
T Consensus 271 ~ia~~-p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 271 YLIYY-FVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp EEEEE-TTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred cEEEe-CCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 89998 445666665 5789999999654 3 3333333 46799999999999998875 7799
Q ss_pred EEEeC-CCcEEEEeccCCC---CcC-------CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 337 AVWNF-RGELVTSFEDHLL---WHP-------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 337 klWd~-~G~ll~tl~gH~~---~~~-------~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+.||. +|+ +.++.++.. +.. -..-+.|+++|||.++++-.. .+.|+-.++
T Consensus 348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----------n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----------GKAIRKYAV 408 (409)
T ss_dssp EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----------TCEEEEEEE
T ss_pred EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----------CCeEEEEEe
Confidence 99996 576 566776611 000 011478999999999997654 678877654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=134.55 Aligned_cols=289 Identities=11% Similarity=0.084 Sum_probs=187.1
Q ss_pred CceEEEEEEeeCCCEEEEEEee-cCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec--
Q 011970 129 DEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-- 205 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~-~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-- 205 (474)
++..-.+...|||+.+-.+... ...+ .++.+-|..+++....++ .+ ..|. ++|| |||++|..++
T Consensus 32 ~~~~~~~~~~pd~~~vyV~~~~~~~~~------~~V~ViD~~t~~v~~~I~---vG--~~P~-va~s-pDG~~lyVan~~ 98 (386)
T 3sjl_D 32 DEPRILEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRVIGMID---GG--FLPN-PVVA-DDGSFIAHASTV 98 (386)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEEEEEEE---EC--SSCE-EEEC-TTSSCEEEEEEE
T ss_pred cccceeeccCCCCCEEEEEcCcccCCC------CEEEEEECCCCeEEEEEE---CC--CCCc-EEEC-CCCCEEEEEccc
Confidence 3433445668999987664421 0112 578888888888754322 22 2354 9998 7999775544
Q ss_pred --------CCCcEEEeecCCCeEEEEEc-C--------CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 206 --------QDSIYKVFDLKNYTMLYSIS-D--------KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 206 --------~D~tiKlWdl~tg~~l~tl~-~--------~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.+++|.+||.++++.+.++. . ..-+.++|||+ .++.++.. ..+.+|.++|+++++.++++.
T Consensus 99 ~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCCeEEEEECCCCcEEEEEE
Confidence 36789999999999998875 1 13456999984 45555532 235789999999999999997
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCC----ceE-EEEE-cCCCcEEEEEcCCcEEEEe
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFM----TPS-AFIF-LYENQLFLTFRNRTVAVWN 340 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~----~v~-sv~F-spdg~llaS~sD~tIklWd 340 (474)
-. .. ... .|.....+++.+.||.+-..++.+ ++...+...+++ .+. ..+| .++|+++....+++|.+-|
T Consensus 178 v~--g~-~~~-~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 178 VP--DC-YHI-FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp CC--SE-EEE-EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred CC--Cc-cee-ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 31 11 112 233445666778899999999986 665432222221 111 1355 4899876655589999999
Q ss_pred CCCcE---EEEec---c---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc-cCCCCeEEEEeCCCCeEEEEecCC
Q 011970 341 FRGEL---VTSFE---D---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM-EGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 341 ~~G~l---l~tl~---g---H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~-~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+.++. +..++ . -..|.+.- ...++++|+++.|.-.-..+. +.+ ....++|-+-|+.|++.++++.--
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~i~vg 330 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAKFEMG 330 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCcceeecceeccccccccccccCCC-cceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEEEECC
Confidence 96542 22222 0 01232211 245889999999887542100 000 001367999999999999998543
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcC-CCcEEEcc
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNR-HGLVHVWS 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~-DgtVklWd 473 (474)
. .+++|+|||||+ +||+++. +++|.+.|
T Consensus 331 ~-----------------------------------~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 331 H-----------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp E-----------------------------------EECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred C-----------------------------------CcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 2 688999999997 8888764 89999887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-11 Score=116.67 Aligned_cols=226 Identities=11% Similarity=0.046 Sum_probs=157.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
....-.+.+|+|+++.|.-+. . .+ ..+..|+...++. ..+.. -..|..++|+ +||+++++. +
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d--~-~~------~~i~~~d~~~~~~----~~~~~--~~~~~~i~~~-~dG~l~v~~--~ 72 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVD--I-PA------KKVCRWDSFTKQV----QRVTM--DAPVSSVALR-QSGGYVATI--G 72 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEE--T-TT------TEEEEEETTTCCE----EEEEC--SSCEEEEEEB-TTSSEEEEE--T
T ss_pred CCccccCCeEECCCCEEEEEE--C-CC------CEEEEEECCCCcE----EEEeC--CCceEEEEEC-CCCCEEEEE--C
Confidence 345667889999877766543 2 23 5778888777664 22333 2457789998 799977754 5
Q ss_pred CcEEEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEecCCC-------CccEEEEecC-CCeEEEEEeecCcce
Q 011970 208 SIYKVFDLKNYTMLYSIS------DKHVQEIKISPGIMLLIFNRSSS-------HVPLKILSIE-DGTVLKVFYHLLHRN 273 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~------~~~V~~vafSpg~~la~~s~~s~-------D~tIkLWdi~-tG~~L~tl~~h~~~v 273 (474)
..|.+||.++++...... ...+.+++++|++.+..+..... ...-+||.+. +|+...... +....
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~~p 151 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-QVDIS 151 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-EESBE
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-ccccc
Confidence 679999999988543221 13588999998666655532211 1235666664 455544333 33456
Q ss_pred eEEEEEecCCCeEEEE-eCCCcEEEEEC--CCCceE-----EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C
Q 011970 274 KKVDFIEQFNEKLLVK-QENENLQILDV--RNAELM-----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 343 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~-~~D~tIkIWDv--~tg~~~-----~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G 343 (474)
..++|+ |++..|.+. +.++.|.+||+ .+|++. ..+..+...+..+++.++|++.++.. ++.|..||.+ |
T Consensus 152 ngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 152 NGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred cceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 789987 667777665 57899999997 577643 22334456789999999999999887 8899999996 9
Q ss_pred cEEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEec
Q 011970 344 ELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCK 378 (474)
Q Consensus 344 ~ll~tl~gH~~~~~~~~v~svafS-pDg~~LaS~s~ 378 (474)
+++.++..+... +.+++|. ||++.|...+.
T Consensus 231 ~~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence 999999877544 6899998 99987766554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-11 Score=131.62 Aligned_cols=279 Identities=13% Similarity=0.082 Sum_probs=183.8
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCC----------ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPD----------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~----------~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+++|+.++.++.+..+|..||+.+=....... ..-+++++ ++..|+.++ .| ..+..+
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~----~d------g~l~al 143 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGA----WD------GRLIAL 143 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEEC----TT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEc----CC------CEEEEE
Confidence 478888899999999999999999876654211 11234444 455566543 33 467777
Q ss_pred EeccCCCCCccceeeeccc------cCce-EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEEEcC---C----
Q 011970 167 YIRRGKPDSGFALFESESL------KWPG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---K---- 227 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~------~~~~-~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~---~---- 227 (474)
|..+|+. +|+.... ..+. ..... +|++++.++ .|+.|..+|.+||+++.++.. .
T Consensus 144 D~~tG~~-----~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 144 DAATGKE-----VWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP 216 (677)
T ss_dssp ETTTCCE-----EEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred ECCCCCE-----EeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence 8888986 3433210 0011 11222 677766554 279999999999999987742 1
Q ss_pred --------------------------cE-EEEEEcC-CceEEEEecCC------------CC----ccEEEEecCCCeEE
Q 011970 228 --------------------------HV-QEIKISP-GIMLLIFNRSS------------SH----VPLKILSIEDGTVL 263 (474)
Q Consensus 228 --------------------------~V-~~vafSp-g~~la~~s~~s------------~D----~tIkLWdi~tG~~L 263 (474)
.+ ..++++| ++++.+..... +| .+|.-+|.+||+.+
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~ 296 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK 296 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred ccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE
Confidence 01 2478887 56655543221 11 25999999999999
Q ss_pred EEEeecCcc------eeEEEEE--ecCC---CeEEEEeCCCcEEEEECCCCceEEecccc-CCce---------------
Q 011970 264 KVFYHLLHR------NKKVDFI--EQFN---EKLLVKQENENLQILDVRNAELMEVSRTE-FMTP--------------- 316 (474)
Q Consensus 264 ~tl~~h~~~------v~~V~F~--~~~~---~~ll~~~~D~tIkIWDv~tg~~~~~l~~h-~~~v--------------- 316 (474)
-.++...+. .....+. +.+| ..+++++.++.|.++|.++|+++....-. ..+.
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~ 376 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA 376 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecccc
Confidence 888732121 1111111 1244 34666789999999999999987543211 0000
Q ss_pred -------------------EEEEEcCCCcEEEEEc-C-------------------------------------------
Q 011970 317 -------------------SAFIFLYENQLFLTFR-N------------------------------------------- 333 (474)
Q Consensus 317 -------------------~sv~Fspdg~llaS~s-D------------------------------------------- 333 (474)
..++|+|+++++.... +
T Consensus 377 ~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 456 (677)
T 1kb0_A 377 RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF 456 (677)
T ss_dssp GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred CcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCc
Confidence 1468899988887653 2
Q ss_pred CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 334 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 334 ~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
++|..||+ +|+.+-+++.... +++..++++|.+++.++. ||.+++||..||+++.++.-..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTA-----------DGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECC-----------CCcEEEEECCCCceeeeeeCCC
Confidence 78999999 5999888764432 345667888888988865 9999999999999999997544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=118.92 Aligned_cols=289 Identities=10% Similarity=0.035 Sum_probs=200.4
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+..|..++.++.+..|| .+|+.+-.... +...+.+++..++|...+. .. . +..+| ++|+....+
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~------t~------~-l~~~d-~~g~~~~~~ 93 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGTIYFG------SD------K-VYAIN-PDGTEKWRF 93 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTEECCS------SC------E-EEEEC-CCGGGGGGS
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCcEEEe------cC------c-EEEEC-CCCcEEEEE
Confidence 56788888999999999 88998776654 4567789999888875442 22 2 44455 366642211
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
.+-. .. .....+. +|.+. .++.++.+..+|.+ |+.+.... ...+.++.+.+++.+.++ ..++.|..+
T Consensus 94 ~~~~--~~--~~~~~~~--~~~l~-v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg---t~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKK--AI--VSDFTIF--EDILY-VTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG---SNDNYLYAI 162 (330)
T ss_dssp CC---------CCEEEE--TTEEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE---CTTSEEEEE
T ss_pred ECCC--Cc--ccCceEE--CCEEE-EEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE---cCCCEEEEE
Confidence 1111 11 1134443 56554 46678889999988 88776654 344667777766666665 335789999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCc
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRT 335 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~t 335 (474)
|.+ |+.+..+......+..+.+. .++.+.++. +.|..+| .+|+.+.....+...+.++++.++|.+.+...++.
T Consensus 163 d~~-g~~~~~~~~~~~~~~~~~~d--~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~g 236 (330)
T 3hxj_A 163 NPD-GTEKWRFKTNDAITSAASIG--KDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGH 236 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEEC--TTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTE
T ss_pred CCC-CCEeEEEecCCCceeeeEEc--CCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCe
Confidence 998 99888887544455555542 356677776 8999999 88887765555556688888999999988777787
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
|..+|.+|+.+..+...... +.++++.++|.+.+. +. +|.|..+|. +|+.+..+.-...
T Consensus 237 l~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v~-t~-----------~ggl~~~d~-~g~~~~~~~~~~~--- 295 (330)
T 3hxj_A 237 LYAINPDGTEKWRFKTGKRI-----ESSPVIGNTDTIYFG-SY-----------DGHLYAINP-DGTEKWNFETGSW--- 295 (330)
T ss_dssp EEEECTTSCEEEEEECSSCC-----CSCCEECTTSCEEEE-CT-----------TCEEEEECT-TSCEEEEEECSSC---
T ss_pred EEEECCCCCEeEEeeCCCCc-----cccceEcCCCeEEEe-cC-----------CCCEEEECC-CCcEEEEEEcCCc---
Confidence 88888889888777654432 345777788887774 32 778999995 8998877754332
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.+.+++++++|+ |+-|+.+|.+++-
T Consensus 296 -------------------------------~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 296 -------------------------------IIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp -------------------------------CCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred -------------------------------cccceEEcCCCE-EEEEcCCCeEEEE
Confidence 566788899997 5558889998764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=143.97 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=108.3
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc-e-e
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR-N-K 274 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~-v-~ 274 (474)
+|..|+.++.|+++..||+++|+++.++....+.+..+.+++.+++. ++.|+.|..||.+||+.+..++.+... + .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~--~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLP--DPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEE--CTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEE--eCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 35577888899999999999999998876555555555555533333 246889999999999998777643211 1 1
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccC
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 352 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH 352 (474)
+..+ ..++.+++++.|++|..||.++|+++..+..+. ...++|++.+++.++ |++|..||. +|+++.+++.+
T Consensus 86 sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 86 SPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred CceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 1111 135777888899999999999999987765543 245677888888888 999999999 59987666533
Q ss_pred CCCcCCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 353 LLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg---~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
.. ...++.+++ ..++.++. ||.|..||..||+.+.+.+-.
T Consensus 160 ~~-------~~~~~~~~~~~~~~v~~~~~-----------dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 160 DY-------AASLPEDDVDYKMSHFVSNG-----------DGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EE-------CCBCCCCCTTCCCCEEEEET-----------SCEEEEECTTTCCEEEEEECS
T ss_pred cc-------cCccccCCccccceEEEECC-----------CCEEEEEECCCCcEEEEecCC
Confidence 21 223345542 33444554 899999999999999887643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-10 Score=109.43 Aligned_cols=295 Identities=11% Similarity=0.110 Sum_probs=186.5
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCC--------CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSP--------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~--------~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
.++.|+.++.++.+..+|.+||+.+-...... ...+.+...- ++..|..++ .+ ..+...|.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~----~~------g~l~a~d~ 120 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIGS----EK------AQVYALNT 120 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEEE----TT------SEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEEc----CC------CEEEEEEC
Confidence 47889999999999999999999886655421 1233332222 344555543 33 46777888
Q ss_pred ccCCCCCccceeeeccccC-ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcE------EEEEEcCCceE
Q 011970 169 RRGKPDSGFALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHV------QEIKISPGIML 240 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~-~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V------~~vafSpg~~l 240 (474)
.+|+. +|....-.. ....... +|. |..++.|+.+..+|.++|+.+..... ..+ ....+. ++.+
T Consensus 121 ~tG~~-----~W~~~~~~~~~~~p~~~--~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v 191 (376)
T 3q7m_A 121 SDGTV-----AWQTKVAGEALSRPVVS--DGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAA 191 (376)
T ss_dssp TTCCE-----EEEEECSSCCCSCCEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEE
T ss_pred CCCCE-----EEEEeCCCceEcCCEEE--CCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEE
Confidence 88986 344321001 1122333 564 55567899999999999999887753 222 122233 4555
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcc----------e-eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR----------N-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~----------v-~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
++. ..++.|..+|.++|+.+.++...... + ..... .++.+.+++.++.+..+|.++|+.+-..
T Consensus 192 ~~g---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 192 VVG---GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp EEC---CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EEE---cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 543 34678999999999999887632110 1 11111 2678888889999999999999987543
Q ss_pred cccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.. .....++. .++.+++...++.|..+|. +|+.+-..+...... +.+..+ .+..|..++.
T Consensus 266 ~~--~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~----~~~~~~--~~~~l~v~~~---------- 326 (376)
T 3q7m_A 266 EL--GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL----LTSPVL--YNGNLVVGDS---------- 326 (376)
T ss_dssp CC--CCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC----CCCCEE--ETTEEEEECT----------
T ss_pred cC--CCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc----ccCCEE--ECCEEEEEeC----------
Confidence 32 22333333 4666666655999999999 599887765222111 122222 2455555554
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEEcCCC
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafSpDg~~LaSgs~Dg 467 (474)
+|.|..+|..+|+.+..++.... .+. +... .+..|+.++.||
T Consensus 327 -~g~l~~~d~~tG~~~~~~~~~~~----------------------------------~~~~~~~~--~~~~l~v~~~~G 369 (376)
T 3q7m_A 327 -EGYLHWINVEDGRFVAQQKVDSS----------------------------------GFQTEPVA--ADGKLLIQAKDG 369 (376)
T ss_dssp -TSEEEEEETTTCCEEEEEECCTT----------------------------------CBCSCCEE--ETTEEEEEBTTS
T ss_pred -CCeEEEEECCCCcEEEEEecCCC----------------------------------cceeCCEE--ECCEEEEEeCCC
Confidence 89999999999999988765332 111 1111 256788999999
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.|..|+
T Consensus 370 ~l~~~~ 375 (376)
T 3q7m_A 370 TVYSIT 375 (376)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 999886
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-11 Score=123.51 Aligned_cols=268 Identities=12% Similarity=0.050 Sum_probs=177.1
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEee------cCCCccceeeeEEEEeEeccCCCCCccceee
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~------~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~ 181 (474)
+++.+.|..|++.+.++..+. .. .++|||||+.|..+..+ |..+ ..+.+.|..+++..+.+++=.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~------~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRT------DYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEE------EEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCC------CEEEEEECCCCcEEEEEECCC
Confidence 799999999999999998643 55 89999999988776532 1122 578889988888755433210
Q ss_pred ec---cccCceEEEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEEEcCCcEEEEEEcC-C-ceEEEEecCCCCccEEE
Q 011970 182 SE---SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHVQEIKISP-G-IMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 182 ~~---~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g-~~la~~s~~s~D~tIkL 254 (474)
.. ....|..++|| |||++|..+.. +++|-+.|+++++.+.++.-... +.+.| | ..+++. +.|+.+-+
T Consensus 170 ~~r~~~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~---~~dG~~~~ 243 (426)
T 3c75_H 170 APRFLVGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMN---CRDGSLAR 243 (426)
T ss_dssp CCCCCBSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEE---ETTSSEEE
T ss_pred ccccccCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEE---cCCCCEEE
Confidence 00 01346679998 79998776653 68999999999999988873222 22222 1 222222 12445555
Q ss_pred EecCCCeEEEEE----eecCcce-eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-----cc----ccC---CceE
Q 011970 255 LSIEDGTVLKVF----YHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SR----TEF---MTPS 317 (474)
Q Consensus 255 Wdi~tG~~L~tl----~~h~~~v-~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-----l~----~h~---~~v~ 317 (474)
.+..+|+...+. .-....+ ..+.|. ++++.++.....++|.+.|+.++..... .. .+. ....
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 555556555321 1001111 224444 6677877777788999999876553211 00 000 1112
Q ss_pred EEEEcCCCcEEEEEc-----------CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccc
Q 011970 318 AFIFLYENQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQ 384 (474)
Q Consensus 318 sv~Fspdg~llaS~s-----------D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~ 384 (474)
.++|+|||+.+.... +++|.+.|.. ++.+.++.--.. .+.|+|+|||+ +|++...
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~------ 390 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSA------ 390 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEET------
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcC------
Confidence 368999976554442 2479999994 999998864332 37899999999 8888763
Q ss_pred cccCCCCeEEEEeCCCCeEEEEe
Q 011970 385 WMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.+++|-++|+.|++.++++
T Consensus 391 ----~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 391 ----GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ----TTTEEEEEETTTCCEEEEE
T ss_pred ----CCCeEEEEECCCCCEEEEe
Confidence 3899999999999999998
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-10 Score=111.74 Aligned_cols=223 Identities=11% Similarity=0.014 Sum_probs=152.5
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
...+.+|+|+++.|..+.. .+ ..+..|+...|+. ..+.. -..|.+++|+ ++|+++++. .+ .|
T Consensus 50 ~~egp~~~~~~~~l~~~d~---~~------~~i~~~d~~~~~~----~~~~~--~~~v~~i~~~-~dg~l~v~~-~~-gl 111 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNI---LE------RELHELHLASGRK----TVHAL--PFMGSALAKI-SDSKQLIAS-DD-GL 111 (326)
T ss_dssp BEEEEEEETTTTEEEEEEG---GG------TEEEEEETTTTEE----EEEEC--SSCEEEEEEE-ETTEEEEEE-TT-EE
T ss_pred CCcCCeEeCCCCEEEEEEC---CC------CEEEEEECCCCcE----EEEEC--CCcceEEEEe-CCCeEEEEE-CC-CE
Confidence 4567889999877765432 22 5777888776664 22332 2356789998 799988865 34 49
Q ss_pred EEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEecCC--CCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 211 KVFDLKNYTMLYSIS------DKHVQEIKISPGIMLLIFNRSS--SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 211 KlWdl~tg~~l~tl~------~~~V~~vafSpg~~la~~s~~s--~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
.+||+++|+...... ...+.+++++|++.+.++.... ......||.+.+|+...... +......++|+ ++
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~i~~s-~d 189 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFS-PD 189 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEEC-TT
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC-CCcccCCeEEc-CC
Confidence 999999988643322 1358999999866666553211 11234555554677544333 23445788887 66
Q ss_pred CCeEEEE-eCCCcEEEEECC--CC-ce-----EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccC
Q 011970 283 NEKLLVK-QENENLQILDVR--NA-EL-----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDH 352 (474)
Q Consensus 283 ~~~ll~~-~~D~tIkIWDv~--tg-~~-----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH 352 (474)
+..+.+. ..++.|.+||+. +| ++ +..+.++...+..+++.++|+++++.. ++.|.+||.+|+.+.++..+
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 7777665 568999999986 77 42 223334456788999999999998876 78999999999999888766
Q ss_pred CCCcCCCCeeEEEEC-CCCCEEEEEec
Q 011970 353 LLWHPDCNTNNIYIT-SDQDLIISYCK 378 (474)
Q Consensus 353 ~~~~~~~~v~svafS-pDg~~LaS~s~ 378 (474)
... +.+++|+ ||++.|..++.
T Consensus 270 ~~~-----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQ-----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSB-----EEEEEEESTTSCEEEEEEB
T ss_pred CCC-----cEEEEEecCCCCEEEEEec
Confidence 543 6899998 99887755543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=127.29 Aligned_cols=274 Identities=7% Similarity=-0.039 Sum_probs=175.0
Q ss_pred cEEEEeeCCC----eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEee------cCCCccceeeeEEEEeEe
Q 011970 99 DIVFALAHSG----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 99 ~~las~s~dg----tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~------~s~d~s~Lk~~~~~iw~i 168 (474)
...++...++ ++-+.|..|++.+.++..+. .. .++|||||+.|..+..+ |..+ .++.++|.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~------~~VsviD~ 103 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRT------DYVEVFDP 103 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEE------EEEEEECT
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCC------CEEEEEEC
Confidence 3444444454 88899999999999998755 45 79999999998876643 1233 68999999
Q ss_pred ccCCCCCccceeeec---cccCceEEEEeCCCCeEEEEecC--CCcEEE--eecCCCeEEEEEcCCcEEEEEEcC-CceE
Q 011970 169 RRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKV--FDLKNYTMLYSISDKHVQEIKISP-GIML 240 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKl--Wdl~tg~~l~tl~~~~V~~vafSp-g~~l 240 (474)
.+++...++++-... ....|..++|| |||++|..+.. +.++.| +|+++ +.++.-... +.+.| |...
T Consensus 104 ~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~ 177 (368)
T 1mda_H 104 VTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAAT 177 (368)
T ss_dssp TTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTE
T ss_pred CCCCEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeE
Confidence 999986654432000 01346689998 79998877653 467889 99877 455531111 11223 2222
Q ss_pred EEEecCCCCccEEEEecCC-----CeEEEE----EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc--eEEec
Q 011970 241 LIFNRSSSHVPLKILSIED-----GTVLKV----FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVS 309 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~t-----G~~L~t----l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~--~~~~l 309 (474)
..+ .+.|+.+-+-|+++ |+.+.+ +.-..... . . ++++.++..+. +++.+.|+.++. .+...
T Consensus 178 ~~~--~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 178 HYL--GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp EEC--CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred EEE--EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence 222 23455665667665 544321 11001111 2 3 55777777767 999999987643 22221
Q ss_pred c-------ccCCceEE---EEEcCCCcEEEE-Ec-C-C-------cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 310 R-------TEFMTPSA---FIFLYENQLFLT-FR-N-R-------TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 310 ~-------~h~~~v~s---v~Fspdg~llaS-~s-D-~-------tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
. .+...+.. ++|+|||+.+.. .. + + .+.++|+. ++.+.++.-... .+.++|+|
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~ 323 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQ 323 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECC
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECC
Confidence 1 11111111 689999776554 33 3 2 56699994 999998875543 47899999
Q ss_pred CCCE-EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 369 DQDL-IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 369 Dg~~-LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
||++ +++.. ..+++|-++|+.|++.++++....
T Consensus 324 Dg~~l~va~~----------~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 324 DGASDNYANS----------AGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp SSSCEEEEEE----------TTTTEEEEEESSSCEEEEECCCCS
T ss_pred CCCEEEEEcc----------CCCCeEEEEECCCCcEEEEEECCC
Confidence 9984 45443 128999999999999999998766
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.2e-11 Score=114.23 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=156.9
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
+..+..|.. ........+|+|+|+.|+-+. ..+ ..+..|+. .|+. ..|.. ....+..++|+ ++
T Consensus 34 ~~~~~~l~~-~~~~~egp~~~~~g~~l~~~d---~~~------~~i~~~~~-~g~~----~~~~~-~~~~~~gl~~d-~d 96 (305)
T 3dr2_A 34 DARLLTLYD-QATWSEGPAWWEAQRTLVWSD---LVG------RRVLGWRE-DGTV----DVLLD-ATAFTNGNAVD-AQ 96 (305)
T ss_dssp TCCCEEEEC-CCSSEEEEEEEGGGTEEEEEE---TTT------TEEEEEET-TSCE----EEEEE-SCSCEEEEEEC-TT
T ss_pred CCceEEEec-CCcCccCCeEeCCCCEEEEEE---CCC------CEEEEEeC-CCCE----EEEeC-CCCccceeeEC-CC
Confidence 344445543 346678999999999665533 233 46777774 6653 23443 23457789998 79
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEecC--C-------------CCccEEEEe
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKISPGIMLLIFNRS--S-------------SHVPLKILS 256 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~------~~~V~~vafSpg~~la~~s~~--s-------------~D~tIkLWd 256 (474)
|+++++...++.|.+||.. |+...... .+.+.+++++|++.+..+.+. . ....|..+|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9988887777899999986 66432221 134678999987666664210 0 124688888
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC------CcEEEEECCCCceE--Eec-cccCCceEEEEEcCCCcE
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELM--EVS-RTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D------~tIkIWDv~tg~~~--~~l-~~h~~~v~sv~Fspdg~l 327 (474)
.++|+..... .......++|+ |++..|.++..+ +.|.+||+..+.+. +.+ ......+..+++.++|++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 8788765443 23456788986 667777776543 79999998865421 111 112345667899999998
Q ss_pred EEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 328 FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 328 laS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.++..++ |.+||.+|+++..+..+.. +.+++|+||++.|..++.
T Consensus 253 wv~~~~g-v~~~~~~g~~~~~~~~~~~------~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 253 WSSSGTG-VCVFDSDGQLLGHIPTPGT------ASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECCSSE-EEEECTTSCEEEEEECSSC------CCEEEECTTSCEEEEEET
T ss_pred EEecCCc-EEEECCCCCEEEEEECCCc------eeEEEEeCCCCEEEEEcC
Confidence 7766454 9999999999998876542 578999999988877653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=128.74 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=131.9
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-------------EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-------------~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkL 254 (474)
+..++++ +.+.+|++|+.|+ ++||++++.. .+..+. . |..|+| ++..|+++ .++.|++
T Consensus 40 ~nlLais-~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp-~-V~~l~f-d~~~L~v~----~~~~l~v 110 (388)
T 1xip_A 40 LQNLDIS-NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIP-D-VIFVCF-HGDQVLVS----TRNALYS 110 (388)
T ss_dssp CBCEEEE-TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECT-T-EEEEEE-ETTEEEEE----ESSEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCC-C-eeEEEE-CCCEEEEE----cCCcEEE
Confidence 4468998 5777899998884 7789976433 233333 4 999999 78888776 2579999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCC
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~ 334 (474)
||+.+-....++..|...+..+.+.+| .+++...||+|.+||+.++.+.. +...|++++|||+| +.+.+.||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg 182 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDR 182 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTS
T ss_pred EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCC
Confidence 999877666667777777888887654 38888999999999999988764 34589999999999 44433499
Q ss_pred cEEEEeCC-CcE--EEEe------c---cCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 011970 335 TVAVWNFR-GEL--VTSF------E---DHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (474)
Q Consensus 335 tIklWd~~-G~l--l~tl------~---gH~~~~~~~~v~svafSpDg~~LaS~s~~~ 380 (474)
+|++|+.+ +++ .+++ + +|... |.+|.|.++++++++|...+
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-----V~sI~wl~~~~flv~y~~~~ 235 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-----PLSVTILSPQDFLAVFGNVI 235 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-----EEEEEESSSSEEEEEEECCC
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCee-----EEEEEEecCCeEEEEEcCCC
Confidence 99999997 554 7778 4 35543 89999999999999998743
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=121.99 Aligned_cols=264 Identities=14% Similarity=0.119 Sum_probs=171.9
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEeecCCCeEEEEEc-C---
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D--- 226 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWdl~tg~~l~tl~-~--- 226 (474)
.++.+-|..+++....++ .+ ..| .++|| |||+.|..+. .+++|-++|..+++.+.++. .
T Consensus 99 ~~VsVID~~t~~vv~~I~---vG--~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTD---GG--FLP-HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEE---EC--SSC-EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEE---CC--CCC-ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 578888988888754322 22 356 89998 7999776554 46799999999999988875 2
Q ss_pred -----CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC-CeEEEEeCCCcEEEEE
Q 011970 227 -----KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILD 299 (474)
Q Consensus 227 -----~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~-~~ll~~~~D~tIkIWD 299 (474)
..-..++|||+ .++.++.. ..+.+|-+.|+++++.++++.-- .. +... |++ ..+++-+.|+++-+.|
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v~--g~--~~~~-p~g~~~~v~~~~dG~~~~V~ 245 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDVP--DC--YHIF-PASPTVFYMNCRDGSLARVD 245 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECC--SE--EEEE-EEETTEEEEEETTSSEEEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEcC--Cc--eeec-cCCCcEEEEEcCCCCEEEEE
Confidence 22356899985 45555532 22578999999999999998731 11 2222 333 3344457888888888
Q ss_pred CCCCceEEe----ccccCCce-EEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEE---Eec---cC---CCCcCCCCeeEE
Q 011970 300 VRNAELMEV----SRTEFMTP-SAFIFLYENQLFLTFR-NRTVAVWNFRGELVT---SFE---DH---LLWHPDCNTNNI 364 (474)
Q Consensus 300 v~tg~~~~~----l~~h~~~v-~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~---tl~---gH---~~~~~~~~v~sv 364 (474)
..+++...+ +.-....+ ..+.|+++++.++-.+ .++|.+-|..+.-+. +++ .. ..|.+.. ...+
T Consensus 246 ~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g-~~~v 324 (426)
T 3c75_H 246 FADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG-WQQT 324 (426)
T ss_dssp CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS-SSCE
T ss_pred CCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC-ceee
Confidence 866665422 11111111 1356899988777666 889999998643322 221 00 0111110 1348
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccccc
Q 011970 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 444 (474)
Q Consensus 365 afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (474)
+|+|||+.|........+.. -...+++|-+.|..|++.+++|..-.
T Consensus 325 a~s~dg~rlyVa~~~~~~gt-hk~~s~~VsVID~~T~kvv~~I~vg~--------------------------------- 370 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWK-HKAASRFVVVLNAETGERINKIELGH--------------------------------- 370 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEEE---------------------------------
T ss_pred EEcCCCCEEEEEeccccccc-ccCCCCEEEEEECCCCeEEEEEECCC---------------------------------
Confidence 99999987766532000000 00014689999999999999996433
Q ss_pred ccCEEEEEEcCCCC-EEEEEc-CCCcEEEccC
Q 011970 445 LEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 474 (474)
Q Consensus 445 l~~V~slafSpDg~-~LaSgs-~DgtVklWd~ 474 (474)
..++++|+|||+ .||++. .+++|-++|.
T Consensus 371 --~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 371 --EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp --EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred --CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 467899999999 999999 5999999873
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=126.13 Aligned_cols=168 Identities=10% Similarity=0.034 Sum_probs=126.3
Q ss_pred CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe-----------EEEEEeecCcceeEEEEEecCCCeEEEEeCCCc
Q 011970 227 KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT-----------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 294 (474)
Q Consensus 227 ~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~-----------~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~t 294 (474)
..+..+++|+ .+.+++++. ..+++|++++.+ ..... .+.. +..|+| ++..|+++ .++.
T Consensus 38 ~~~nlLais~~~gll~a~~~----~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASG----SKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp SCCBCEEEETTTTEEEEEET----TEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred ccccEEEEcCCCCEEEEeCC----CEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 3678899997 677776643 368889876543 11122 3445 999999 46677777 8999
Q ss_pred EEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 295 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 295 IkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
|++||+.+.........|...+..+.+.+.. +|... ||+|.+||+. +++.. +... |.+++|||+|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~-----Vs~v~WSpkG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQN-----VTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEES-----EEEEEECSSE--
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCC-----ceEEEEcCCc--
Confidence 9999999877666666777788888887653 55555 9999999995 77754 2222 8999999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEe------c---CCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI------N---ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl------~---gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
++.|+. ||+|++|+..++++ .++| . +|..
T Consensus 175 ~~vg~~-----------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~----------------------------- 214 (388)
T 1xip_A 175 LAVLLK-----------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY----------------------------- 214 (388)
T ss_dssp EEEEET-----------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS-----------------------------
T ss_pred eEEEEc-----------CCcEEEEcCCCccccccceecCCcccccccCCCe-----------------------------
Confidence 566665 99999999988887 7888 3 2443
Q ss_pred cccccCEEEEEEcCCCCEEEE
Q 011970 442 GEALEDITSLFYDEERNEIYT 462 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaS 462 (474)
.|.+|.|.+++++|++
T Consensus 215 -----~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 215 -----SPLSVTILSPQDFLAV 230 (388)
T ss_dssp -----EEEEEEESSSSEEEEE
T ss_pred -----eEEEEEEecCCeEEEE
Confidence 7999999999999886
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-10 Score=122.67 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=157.6
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC----cEEEEEEcC---CceEEEEecCC---CCccEEEEecCCC
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQEIKISP---GIMLLIFNRSS---SHVPLKILSIEDG 260 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~----~V~~vafSp---g~~la~~s~~s---~D~tIkLWdi~tG 260 (474)
++.. +|+ |..++.|+.+..+|.+||+.+.+.... ....+..+| ++.+++..... .++.|.-||.+||
T Consensus 117 ~~~~--~g~-v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVW--KGK-VYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEE--CCE-EEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 4553 454 555778999999999999998776431 122333344 66666553321 3678999999999
Q ss_pred eEEEEEeecC------------------------------cce-eEEEEEecCCCeEEEEeCCC----------------
Q 011970 261 TVLKVFYHLL------------------------------HRN-KKVDFIEQFNEKLLVKQENE---------------- 293 (474)
Q Consensus 261 ~~L~tl~~h~------------------------------~~v-~~V~F~~~~~~~ll~~~~D~---------------- 293 (474)
+++-++.... ..+ ..++|. +.++.+.++..++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9998875210 011 145665 5567888876665
Q ss_pred ---cEEEEECCCCceEEeccc--cCC-------ceEEEEEcCCCc---EEEEEc-CCcEEEEeC-CCcEEEEec------
Q 011970 294 ---NLQILDVRNAELMEVSRT--EFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFE------ 350 (474)
Q Consensus 294 ---tIkIWDv~tg~~~~~l~~--h~~-------~v~sv~Fspdg~---llaS~s-D~tIklWd~-~G~ll~tl~------ 350 (474)
.|..||..||+.+-.... |.. .+.......+|+ .++.++ ||.+.++|. +|+++...+
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 399999999998855432 321 111122234776 777887 999999999 599984322
Q ss_pred ----------------------------------cCCCCcCCCCeeEEEECCCCCEEEEEecCCC-------c-------
Q 011970 351 ----------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEP-------E------- 382 (474)
Q Consensus 351 ----------------------------------gH~~~~~~~~v~svafSpDg~~LaS~s~~~~-------~------- 382 (474)
|...| ..++|+|+.+++......-+ .
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w------~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~ 426 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDW------QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPF 426 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCS------SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCC------CcceECCCCCEEEEeccccceeeeecccccccccc
Confidence 11122 24899999998887643100 0
Q ss_pred -ccccc-------------------CCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccc
Q 011970 383 -DQWME-------------------GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 442 (474)
Q Consensus 383 -~~~~~-------------------s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (474)
...-. ..+|+|..||+.||+.+.+++.+..
T Consensus 427 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------------------------------ 476 (689)
T 1yiq_A 427 KSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------------------------------ 476 (689)
T ss_dssp TTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------------------------------
T ss_pred ccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------------------------------
Confidence 00000 1258999999999999999877652
Q ss_pred ccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 443 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 443 ~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.+-.++..|..++.|+.||.|+.||
T Consensus 477 -----~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 477 -----FNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp -----CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred -----ccCccceECCCEEEEECCCCcEEEEE
Confidence 23345677888999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-09 Score=120.39 Aligned_cols=245 Identities=12% Similarity=0.092 Sum_probs=159.5
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-c---EEEEEEcC---CceEEEEecCC---CCccEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-H---VQEIKISP---GIMLLIFNRSS---SHVPLKILSIED 259 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~---V~~vafSp---g~~la~~s~~s---~D~tIkLWdi~t 259 (474)
.+++. +++ |..++.|+.+..+|.+||+.+.++... . ...+.-+| ++++++..... .++.|..+|.+|
T Consensus 123 ~~a~~--~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 123 GVALW--KGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp CCEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred CceEE--CCE-EEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence 45664 454 555678999999999999998877532 0 01111122 55665553321 268899999999
Q ss_pred CeEEEEEeecCcc-------------------------------e-eEEEEEecCCCeEEEEeCCC--------------
Q 011970 260 GTVLKVFYHLLHR-------------------------------N-KKVDFIEQFNEKLLVKQENE-------------- 293 (474)
Q Consensus 260 G~~L~tl~~h~~~-------------------------------v-~~V~F~~~~~~~ll~~~~D~-------------- 293 (474)
|+++-++...... + ..++|. +.++.+.++..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCC
Confidence 9999888632111 0 235655 5577777775543
Q ss_pred -----cEEEEECCCCceEEecc--ccC-------CceEEEEEcCCC---cEEEEEc-CCcEEEEeC-CCcEEEEeccC-C
Q 011970 294 -----NLQILDVRNAELMEVSR--TEF-------MTPSAFIFLYEN---QLFLTFR-NRTVAVWNF-RGELVTSFEDH-L 353 (474)
Q Consensus 294 -----tIkIWDv~tg~~~~~l~--~h~-------~~v~sv~Fspdg---~llaS~s-D~tIklWd~-~G~ll~tl~gH-~ 353 (474)
+|..+|..||+.+-... .|. ..+..+.+..|| ++++.++ +|.|.++|. +|+++..++-. .
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 59999999999875432 232 223334445588 6788888 999999999 49998766421 1
Q ss_pred CCcC----CCC-e------------------------eEEEECCCCCEEEEEecCCCcc---------------------
Q 011970 354 LWHP----DCN-T------------------------NNIYITSDQDLIISYCKAEPED--------------------- 383 (474)
Q Consensus 354 ~~~~----~~~-v------------------------~svafSpDg~~LaS~s~~~~~~--------------------- 383 (474)
.|.. .|. + ..++|+|++.++...+..-+.+
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 1100 000 0 2578999999888764310000
Q ss_pred ccc-----------cCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE
Q 011970 384 QWM-----------EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 452 (474)
Q Consensus 384 ~~~-----------~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 452 (474)
+.- ....++|..||+.||+.+.+++... .+++..
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~g~ 483 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-----------------------------------PWNGGT 483 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-----------------------------------CCcCcc
Confidence 000 0124899999999999998886433 344556
Q ss_pred EcCCCCEEEEEcCCCcEEEcc
Q 011970 453 YDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 453 fSpDg~~LaSgs~DgtVklWd 473 (474)
++++|..++.|+.||.+++||
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEE
Confidence 778899999999999999997
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-12 Score=126.36 Aligned_cols=224 Identities=12% Similarity=0.080 Sum_probs=123.8
Q ss_pred eeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 96 ~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
..+++|++++.||.+.+||..||+.+-.+.. +.+.+..+.++|..++++ +.| ..+..||..+|+...
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~----s~d------g~l~a~d~~tG~~~w 73 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPD----PND------GSLYTLGSKNNEGLT 73 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEEC----TTT------CCEEEC-----CCSE
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEe----CCC------CEEEEEECCCCceee
Confidence 3589999999999999999999999988875 345666677788777652 455 678899988998632
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEE
Q 011970 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkL 254 (474)
..+ +....... .+..++ .+| .|..++.|+++..||+++|+++.++.... .+.++| ++.++++ +.|+.|+.
T Consensus 74 ~~~-~~~~~~~~-~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~---~~dg~v~a 144 (369)
T 2hz6_A 74 KLP-FTIPELVQ-ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLG---RTEYTITM 144 (369)
T ss_dssp ECS-CCHHHHHT-TCSCC-------CCCCEEEEEEEEECCC------------------------EEEE---EEEEEEEC
T ss_pred eee-ccCccccc-cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEE---ecCCEEEE
Confidence 111 11110110 011221 234 66778889999999999999988776432 245666 6666655 33689999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecC---CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~---~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
||.++|+++.++..+. ...+.+. .+ ++.+++++.|+.|..||.++|+.+-........+..+++++||.+.+..
T Consensus 145 ~d~~tG~~~W~~~~~~--~~~~~~~-~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~ 221 (369)
T 2hz6_A 145 YDTKTRELRWNATYFD--YAASLPE-DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMH 221 (369)
T ss_dssp CCSSSSSCCCEEEEEE--ECCBCCC-CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECC
T ss_pred EECCCCCEEEeEeccc--ccCcccc-CCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccc
Confidence 9999999987776321 1222221 11 1678888999999999999999876654333333445667888654221
Q ss_pred ---cCCcEEEEeC-CCc
Q 011970 332 ---RNRTVAVWNF-RGE 344 (474)
Q Consensus 332 ---sD~tIklWd~-~G~ 344 (474)
.++++..+|. +|+
T Consensus 222 ~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 222 INVAVETLRYLTFMSGE 238 (369)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred eeecccceeeeehhcCC
Confidence 1344555555 254
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-08 Score=110.68 Aligned_cols=278 Identities=12% Similarity=0.158 Sum_probs=175.3
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~----------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+++|+.++.++.+..+|..||+.+=........ .-+++++ ++..|+.++ .| ..+...
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~d------g~l~al 132 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LD------GRLIAL 132 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CC------CEEEEE
Confidence 4788899999999999999999988766532110 0123344 244555532 33 466677
Q ss_pred EeccCCCCCccceeeeccc----cC-c-eEEEEeCCCCeEEEEecC-----CCcEEEeecCCCeEEEEEcC---C-----
Q 011970 167 YIRRGKPDSGFALFESESL----KW-P-GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K----- 227 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~----~~-~-~~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~tg~~l~tl~~---~----- 227 (474)
|..+|+. +|..... .+ + ..... .+|++++..+. ++.|..+|++||+++.++.. .
T Consensus 133 D~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 133 DAKTGKA-----IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp ETTTCCE-----EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 8888886 3443110 00 0 01112 16777765442 68999999999999987741 0
Q ss_pred ------------------------cE-EEEEEcC-CceEEEEecCC------------CC----ccEEEEecCCCeEEEE
Q 011970 228 ------------------------HV-QEIKISP-GIMLLIFNRSS------------SH----VPLKILSIEDGTVLKV 265 (474)
Q Consensus 228 ------------------------~V-~~vafSp-g~~la~~s~~s------------~D----~tIkLWdi~tG~~L~t 265 (474)
.+ ..+++.| ++++.+....+ .| ..|.-+|.+||+.+-.
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 01 1368887 55555543211 00 1499999999999988
Q ss_pred Eee--cCcce-------eEEEEEecCCC---eEEEEeCCCcEEEEECCCCceEEeccccC-Cce----------------
Q 011970 266 FYH--LLHRN-------KKVDFIEQFNE---KLLVKQENENLQILDVRNAELMEVSRTEF-MTP---------------- 316 (474)
Q Consensus 266 l~~--h~~~v-------~~V~F~~~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v---------------- 316 (474)
++. |..+. .-.++ ..++. .+++++.|+.+.++|..+|+++....-.. .+.
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAEL-NIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEE-EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTT
T ss_pred eecCCCccccccCCCCcEEEEe-ccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccc
Confidence 873 22111 11111 12332 36667899999999999999883211100 000
Q ss_pred -------------------EEEEEcCCCcEEEE------------------------------------Ec-CCcEEEEe
Q 011970 317 -------------------SAFIFLYENQLFLT------------------------------------FR-NRTVAVWN 340 (474)
Q Consensus 317 -------------------~sv~Fspdg~llaS------------------------------------~s-D~tIklWd 340 (474)
..++|+|+..++.. .. +++|..||
T Consensus 365 ~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D 444 (668)
T 1kv9_A 365 RYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWD 444 (668)
T ss_dssp TCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEE
T ss_pred cccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEe
Confidence 02567887666442 12 48899999
Q ss_pred C-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 341 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 341 ~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
. +|+.+-+.+.+..+ +...++..|.+++.++. |+.++.||..||+.+..++...
T Consensus 445 ~~tG~~~W~~~~~~~~------~~~~~~t~gg~vf~g~~-----------dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 445 PVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp TTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcEEEEccCCCCC------cCceeEeCCCEEEEECC-----------cccchhhhhhcChhheEecCCC
Confidence 9 59998877655432 33445667888888865 9999999999999999987654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-06 Score=97.01 Aligned_cols=312 Identities=8% Similarity=0.043 Sum_probs=196.4
Q ss_pred EEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 91 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 91 V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
|.+|... +..|..+..++-+..|+.++++........+...|++++..++|...|.. .+ ..+.+++..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-----~~------~Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-----EG------AGLFLINPK 243 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-----BS------SCEEEEETT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-----CC------CCeEEEeCC
Confidence 7788776 55566677665577888887776544332234679999999999877642 11 234455644
Q ss_pred cCCCCCccceeeec-------cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE---------cCCcEEEEE
Q 011970 170 RGKPDSGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKHVQEIK 233 (474)
Q Consensus 170 ~G~~~~~~~lf~~~-------~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl---------~~~~V~~va 233 (474)
++++. .+... ....+.++..+ ++|.+.+.. .+ -+.+||.+++++.... ....|.+|.
T Consensus 244 ~~~~~----~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 316 (795)
T 4a2l_A 244 TKEIK----NYLHSPSNPKSISSNYIRSLAMD-SQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF 316 (795)
T ss_dssp TTEEE----EECCCTTCTTSCSCSBEEEEEEC-TTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE
T ss_pred CCeEE----EeecCCCCccccCCCeEEEEEEc-CCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE
Confidence 44431 11110 12346678886 688876643 44 4889998888765432 235799999
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEee-------cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~-------h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..+++.|-+++. ++-|..++..+++. ..+.. ....|.++.. ..++.|-++..++-|..||..+++..
T Consensus 317 ~D~~g~lWigt~---~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~--d~~g~lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 317 MDSQGGMWLGTY---FGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVE--DKDKNLWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp ECTTSCEEEEES---SSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEE--CTTSCEEEEESSSCEEEECTTTCCEE
T ss_pred EeCCcCEEEEEC---CCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEE--CCCCCEEEEECCCCeEEEcCCCCcEE
Confidence 998666666642 35688888776543 22321 1234666663 34678889999988999999988776
Q ss_pred Eeccc--------cCCceEEEEEcCCCc-EEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 307 EVSRT--------EFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 307 ~~l~~--------h~~~v~sv~Fspdg~-llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
..... ....|.++...++|+ +.+...++-|.++|.+ |+. +.+.......+...|.+++..++|++.+..
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 54321 235789998889999 6665556778999986 554 344321100112247899999999988854
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 456 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD 456 (474)
.+-+.++|..+++....... .. +.. -....|.++..+++
T Consensus 470 -------------~~Gl~~~~~~~~~~~~~~~~-~~-~~~--------------------------~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 470 -------------LSALVRFNPEQRSFTTIEKE-KD-GTP--------------------------VVSKQITTLFRDSH 508 (795)
T ss_dssp -------------SSCEEEEETTTTEEEECCBC-TT-CCB--------------------------CCCCCEEEEEECTT
T ss_pred -------------cCceeEEeCCCCeEEEcccc-cc-ccc--------------------------cCCceEEEEEECCC
Confidence 23488899888876432211 00 000 00027999999999
Q ss_pred CCEEEEEcCCCcE
Q 011970 457 RNEIYTGNRHGLV 469 (474)
Q Consensus 457 g~~LaSgs~DgtV 469 (474)
|+..+... +|..
T Consensus 509 g~lWigt~-~Gl~ 520 (795)
T 4a2l_A 509 KRLWIGGE-EGLS 520 (795)
T ss_dssp CCEEEEES-SCEE
T ss_pred CCEEEEeC-CceE
Confidence 99877665 5643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-07 Score=84.67 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=136.3
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
...|..++|++.++.+.++...++.|.++|+.++.....+.. .....++++| ++.|..+.. ....|.++++. |+
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~-g~ 111 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS--QLDRIEVAKMD-GT 111 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET--TTTEEEEEETT-SC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC--CCCEEEEEEcC-CC
Confidence 345678999854677888888889999999976654444432 4788999997 677776643 35689999975 44
Q ss_pred EEEEEe-ecCcceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCceEEeccccCCceEEEEEcCCC-cEEEEEc-CCc
Q 011970 262 VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 335 (474)
Q Consensus 262 ~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~---D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg-~llaS~s-D~t 335 (474)
..+.+. .....-..+++. +++++|..+.. .+.|..+++...............+..++++|++ .++++-. .++
T Consensus 112 ~~~~~~~~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp SCEEEECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 333332 222445788886 55677777643 4788888876433222223445679999999975 5666666 889
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|.+.|.+|..+..+-.. ... -..+++ |+..|.-+.. ..+.|...|..+|+.++++...
T Consensus 191 I~~~~~~g~~~~~~~~~-~~~----P~gi~~--d~~~lyva~~----------~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG-LQY----PFAVTS--YGKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEEEETTEEEEEEEEEC-CCS----EEEEEE--ETTEEEEEET----------TTTEEEEEETTTTEEEEEECCS
T ss_pred EEEEecCCCceEEEecC-CCC----ceEEEE--eCCEEEEEEC----------CCCeEEEEeCCCCCceEEEccc
Confidence 99999986544333221 122 246665 4444444432 2689999999999999999643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=112.30 Aligned_cols=255 Identities=9% Similarity=0.056 Sum_probs=155.8
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEeecCCCeEEEEEc-C----
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D---- 226 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWdl~tg~~l~tl~-~---- 226 (474)
++.+.|..+++.... +..+ ..| .++|| |||+.|..+. .|++|.+||+.+++.+.++. .
T Consensus 47 ~vsvID~~t~~v~~~---i~vG--~~P-~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH---SLGA--FLS-LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEE---EEEC--TTC-EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEE---EeCC--CCC-ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 566677777776443 2222 235 79998 7998877665 37899999999999999885 2
Q ss_pred ----CcEEEEEEcC-CceEEEEecCCCCccEEE--EecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEE
Q 011970 227 ----KHVQEIKISP-GIMLLIFNRSSSHVPLKI--LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQIL 298 (474)
Q Consensus 227 ----~~V~~vafSp-g~~la~~s~~s~D~tIkL--Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIW 298 (474)
..-..++||| |.+++++.. +.+..|.+ +|+++ ++++.- ... +.+. |+++...+ .+.|+.+-+-
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t---v~~i~v--~~~--~~~~-p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD---DQLTKS--ASC--FHIH-PGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE---EEEEEC--SSC--CCCE-EEETTEEECCCCTTSCEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh---ceEEEC--CCc--eEEc-cCCCeEEEEEcCCCCEEEE
Confidence 2355799998 556666543 22345777 99977 566541 111 1122 33444433 4688888888
Q ss_pred ECCC-----CceEEe----ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCC---cEEEEecc------CCCCcCCCC
Q 011970 299 DVRN-----AELMEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG---ELVTSFED------HLLWHPDCN 360 (474)
Q Consensus 299 Dv~t-----g~~~~~----l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G---~ll~tl~g------H~~~~~~~~ 360 (474)
|+.+ ++.+.+ ..-.. .+. ++.+++.++.... ++|.+-|+.+ +.+.++.- ...|.+..
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~-~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g- 265 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSS-QAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG- 265 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCS-CCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-
T ss_pred ECccccccCCeEEEEeeeeeeCCC-Ccc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc-
Confidence 9887 543311 11111 222 3556666666556 8888889853 23333311 11222110
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 440 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (474)
...++|+|||+.+.-+....+.... +..++ +.++|+.|++.+++|....
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~-~~~~~-~~ViD~~t~~vv~~i~vg~----------------------------- 314 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCL-AAAEN-TSSVTASVGQTSGPISNGH----------------------------- 314 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTT-SCEEE-EEEEESSSCCEEECCEEEE-----------------------------
T ss_pred ceeeEEcCCCCEEEEEeccccCccc-ccCCC-EEEEECCCCeEEEEEECCC-----------------------------
Confidence 1228899999988754210000000 00133 4499999999999997654
Q ss_pred ccccccCEEEEEEcCCCCE-EEEEc-CCCcEEEccC
Q 011970 441 VGEALEDITSLFYDEERNE-IYTGN-RHGLVHVWSN 474 (474)
Q Consensus 441 ~~~~l~~V~slafSpDg~~-LaSgs-~DgtVklWd~ 474 (474)
..+.++|+|||+. +++.. .+++|.++|.
T Consensus 315 ------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 315 ------DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ------EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ------CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 5678999999984 56666 5999999983
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-08 Score=95.40 Aligned_cols=257 Identities=9% Similarity=0.080 Sum_probs=159.6
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
++..++.|+.++.++.+..+|.+||+.+-.... +.....+... .+| .|+.+ +.+ ..+...|..+|+.
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~p~~-~~~-~v~v~----~~~------g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV-AGEALSRPVV-SDG-LVLIH----TSN------GQLQALNEADGAV 165 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-SSCCCSCCEE-ETT-EEEEE----CTT------SEEEEEETTTCCE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC-CCceEcCCEE-ECC-EEEEE----cCC------CeEEEEECCCCcE
Confidence 444588899999999999999999998876664 2222222222 244 45443 234 4677788888886
Q ss_pred CCccceeeeccccCc------eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCc---------EEEEEEcC--
Q 011970 174 DSGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH---------VQEIKISP-- 236 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~------~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~---------V~~vafSp-- 236 (474)
+|.......+ ...... +|. |..++.++.+..+|+++|+.+....... +..+.-+|
T Consensus 166 -----~W~~~~~~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 166 -----KWTVNLDMPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp -----EEEEECCC-----CCCCCCEEE--TTE-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred -----EEEEeCCCCceeecCCCCcEEE--CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 3433110000 123333 454 5557789999999999999987765210 11111223
Q ss_pred -CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-ccCC
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFM 314 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~~ 314 (474)
++.+.+. +.++.|..+|.++|+.+..... .....+. .+++.+.++..++.|..+|..+|+.+-... ....
T Consensus 238 ~~~~v~~~---~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~---~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFAL---AYNGNLTALDLRSGQIMWKREL--GSVNDFI---VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEE---CTTSCEEEEETTTCCEEEEECC--CCEEEEE---EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEE---ecCcEEEEEECCCCcEEeeccC--CCCCCce---EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence 5566555 3367899999999999877662 2233333 237889999999999999999999875433 1222
Q ss_pred ceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 315 TPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
.+.+.+. .++.+++...++.|.++|. +|+++..++-....+. ....+ .+|.+++ ++. ||.|
T Consensus 310 ~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~----~~~~~-~~~~l~v-~~~-----------~G~l 371 (376)
T 3q7m_A 310 LLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ----TEPVA-ADGKLLI-QAK-----------DGTV 371 (376)
T ss_dssp CCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC----SCCEE-ETTEEEE-EBT-----------TSCE
T ss_pred cccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce----eCCEE-ECCEEEE-EeC-----------CCEE
Confidence 2222222 3566555545999999998 5999887765333211 11222 2555444 444 8888
Q ss_pred EEEe
Q 011970 394 NVSS 397 (474)
Q Consensus 394 klWd 397 (474)
..+|
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8886
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-08 Score=95.04 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=138.7
Q ss_pred CeEEEEEc-C--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEe-CC
Q 011970 218 YTMLYSIS-D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQ-EN 292 (474)
Q Consensus 218 g~~l~tl~-~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~-~D 292 (474)
++.+.+++ + ...+.++|+|++.|..++....+..|...|++||+.++++.-.. .....+++ ++++|.+.. .+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~---~g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL---LNEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE---ETTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE---eCCEEEEEEecC
Confidence 45566665 2 35789999986677766432335789999999999999986211 12234454 366777765 78
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
+++-++|..+++.+.++....... ..++|||+.|..+. +++|.+.|.. .+.+.++.--....+-...|.+.|. ||
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg 162 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG 162 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence 999999999999988764221222 33566777666666 8899999995 7877776622110000125788888 88
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
++.+.... +++|-+-|..||+.++++.-....+. + .............
T Consensus 163 ~lyvn~~~-----------~~~V~vID~~tg~V~~~I~~~g~~~~---~------------------~~~~~~~~~v~nG 210 (266)
T 2iwa_A 163 EVWANIWQ-----------TDCIARISAKDGTLLGWILLPNLRKK---L------------------IDEGFRDIDVLNG 210 (266)
T ss_dssp EEEEEETT-----------SSEEEEEETTTCCEEEEEECHHHHHH---H------------------HHTTCTTCCCEEE
T ss_pred EEEEecCC-----------CCeEEEEECCCCcEEEEEECCCcccc---c------------------ccccccccCceEE
Confidence 76665433 78999999999999999963210000 0 0000000125689
Q ss_pred EEEcCCCCEEE-EEcCCCcEE
Q 011970 451 LFYDEERNEIY-TGNRHGLVH 470 (474)
Q Consensus 451 lafSpDg~~La-Sgs~DgtVk 470 (474)
++|+|||+.|+ ++...++|.
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEE
T ss_pred EEEcCCCCEEEEECCCCCeEE
Confidence 99999998755 555566554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-06 Score=93.04 Aligned_cols=309 Identities=10% Similarity=0.078 Sum_probs=197.2
Q ss_pred cccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeec------CCCceEEEEEEeeCCCEEEEEEeecCCCccceee
Q 011970 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (474)
Q Consensus 88 ~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g------~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~ 160 (474)
...|.+|... ...|..|+.+| +.+|+..+++....... -..+.|++++..++|..-+. +.+
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig-----t~~------ 329 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG-----TYF------ 329 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE-----ESS------
T ss_pred CCeEEEEEEcCCCCEEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE-----ECC------
Confidence 3568888887 44556666665 67889887765544321 12367999999999996553 232
Q ss_pred eEEEEeEeccCCCCCccceeee-----c-cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE----------E
Q 011970 161 RSTKIEYIRRGKPDSGFALFES-----E-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------I 224 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~-----~-~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t----------l 224 (474)
..+..++...+++ ..+.. . .-..|.++..+ ++|.+.+ |+.++-+..||.++++..+- +
T Consensus 330 ~Gl~~~~~~~~~~----~~~~~~~~~~~l~~~~V~~i~~d-~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 330 GGLNYYHPIRNRF----KNIRNIPYKNSLSDNVVSCIVED-KDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp SCEEEECGGGGSS----EEECCCTTSSSCSCSSEEEEEEC-TTSCEEE-EESSSCEEEECTTTCCEEEECCC------CC
T ss_pred CCeEEeCCCcccc----eEEcCCCCCCCCCCCeeEEEEEC-CCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 3444555444443 11111 0 12346678886 6888766 56666688999888775432 2
Q ss_pred cCCcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEee-----cCcceeEEEEEecCCCeEEEEeCCCcEEEE
Q 011970 225 SDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYH-----LLHRNKKVDFIEQFNEKLLVKQENENLQIL 298 (474)
Q Consensus 225 ~~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~-----h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW 298 (474)
..+.|.++...+++. |.+++. ++-|.++|.++|+... +.. ....|.++.. ..++.|.++.. +-|.+|
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~--d~~g~lwigt~-~Gl~~~ 476 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILP--DGEGNLWLGTL-SALVRF 476 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEET---TTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEE--CSSSCEEEEES-SCEEEE
T ss_pred CCccEEEEEEcCCCCEEEEEeC---cCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEE--CCCCCEEEEec-CceeEE
Confidence 346799999986555 666532 3569999999887543 321 2345677664 33567777766 568899
Q ss_pred ECCCCceEEeccc------cCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEecc--CCCCcCCCCeeEEEECCC
Q 011970 299 DVRNAELMEVSRT------EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 299 Dv~tg~~~~~l~~------h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~g--H~~~~~~~~v~svafSpD 369 (474)
|..+++....... ....|.++...++|++.+... +-+..||.. ++. .+.. .....++..|.+|+..++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC
Confidence 9998877654321 236789999999999988776 557788985 554 4431 001112224789999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEE
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 449 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 449 (474)
|++.++. .+-|..||..+++.. .+......|. ..|.
T Consensus 554 g~lWigT-------------~~Gl~~~d~~~~~~~-~~~~~~gl~~------------------------------~~i~ 589 (795)
T 4a2l_A 554 GIIWVGT-------------REGFYCFNEKDKQIK-RYNTTNGLPN------------------------------NVVY 589 (795)
T ss_dssp SCEEEEE-------------SSCEEEEETTTTEEE-EECGGGTCSC------------------------------SCEE
T ss_pred CCEEEEe-------------CCCceeECCCCCcEE-EeCCCCCCch------------------------------hheE
Confidence 9988864 235788998777654 3432221111 1688
Q ss_pred EEEEcCCCCEEEEEcCCCcE
Q 011970 450 SLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 450 slafSpDg~~LaSgs~DgtV 469 (474)
++..+++|+..+++. .|.+
T Consensus 590 ~i~~d~~g~lWi~t~-~Gl~ 608 (795)
T 4a2l_A 590 GILEDSFGRLWLSTN-RGIS 608 (795)
T ss_dssp EEEECTTSCEEEEET-TEEE
T ss_pred EEEECCCCCEEEEcC-CceE
Confidence 999999998877763 4543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-07 Score=89.17 Aligned_cols=223 Identities=9% Similarity=0.059 Sum_probs=142.4
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
.++..++++ ++|+++++...++.|..||..+ +....+. ......|+|+|++.|.++........|..+|..+|+...
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 567789998 6999988888889999999765 4443333 457889999986666665432111235566778888643
Q ss_pred EEee-cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCce-EE---------eccccCCceEEEEEcCCCc-EEEEE
Q 011970 265 VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL-ME---------VSRTEFMTPSAFIFLYENQ-LFLTF 331 (474)
Q Consensus 265 tl~~-h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~-~~---------~l~~h~~~v~sv~Fspdg~-llaS~ 331 (474)
.... .......+++. .++.+++.. .++.|..+|..+++. +. ...+....+..+ +||++ ++++-
T Consensus 110 ~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 3321 11223444432 245666654 688999999876532 11 111233456666 88875 55666
Q ss_pred c-CCcEEEEeCC--CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE-
Q 011970 332 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA- 405 (474)
Q Consensus 332 s-D~tIklWd~~--G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~- 405 (474)
+ .++|..++++ |++ ...+..... -..+++.|||++.++... .+.|.++|. .|+...
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~------P~gi~vd~dG~l~va~~~-----------~~~V~~~~~-~G~~~~~ 247 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTII 247 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCC------CCCeEECCCCCEEEEeCC-----------CCeEEEECC-CCCEEEE
Confidence 6 8899999985 442 222221111 257999999998887543 678999995 587643
Q ss_pred -EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc---CCCCEEEEEcCC
Q 011970 406 -KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD---EERNEIYTGNRH 466 (474)
Q Consensus 406 -tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS---pDg~~LaSgs~D 466 (474)
.+... +...++++|. ||+++|+-++..
T Consensus 248 ~~~~~~----------------------------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQG----------------------------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGGT----------------------------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eecccc----------------------------------cCCceEEEEecccCCCCEEEEECCC
Confidence 22211 1268899999 999888866543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-08 Score=95.26 Aligned_cols=259 Identities=10% Similarity=0.023 Sum_probs=167.5
Q ss_pred cEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 90 KVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 90 ~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
.+..+... +..|..++.+ +..+|. +|+.+..+.. +.....+.++. +|. |..+ +.+ ..+..++.
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~-~~~-l~v~----t~~------~~l~~~d~ 124 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF-EDI-LYVT----SMD------GHLYAINT 124 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC------CCEEEE-TTE-EEEE----CTT------SEEEEECT
T ss_pred cccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE-CCE-EEEE----ecC------CEEEEEcC
Confidence 34555665 5667777766 777885 6877655443 22333344444 554 4432 233 35555664
Q ss_pred ccCCCCCccceeeec-cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEec
Q 011970 169 RRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNR 245 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~-~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~ 245 (474)
. |+. ++... ....+..+.++ ++|.+++ ++.++.+..+|.+ |+.+..+. ...+.++.+.+++.+.+++
T Consensus 125 ~-g~~-----~~~~~~~~~~~~~~~~~-~~g~l~v-gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t- 194 (330)
T 3hxj_A 125 D-GTE-----KWRFKTKKAIYATPIVS-EDGTIYV-GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS- 194 (330)
T ss_dssp T-SCE-----EEEEECSSCCCSCCEEC-TTSCEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-
T ss_pred C-CCE-----EEEEcCCCceeeeeEEc-CCCEEEE-EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-
Confidence 5 664 23321 11122345665 5887555 6678999999998 88776554 4567778887666666653
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg 325 (474)
+.|..+| .+|+.+..+......+.++.+. .++.+.++..++.|..+| .+++.+.........+.++++.++|
T Consensus 195 ----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~--~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g 266 (330)
T 3hxj_A 195 ----DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS--EDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD 266 (330)
T ss_dssp ----SSEEEEC-TTSCEEEEECCSSCCCSCCEEC--TTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS
T ss_pred ----CEEEEEC-CCCcEEEEEccCCcceeceEEC--CCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC
Confidence 5799999 8999888777544556666653 246888888888898888 4666655444444445556677789
Q ss_pred cEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 326 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 326 ~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++.+...++.|..+|.+|+.+..+.-... .+.++++.++|++.+.. .+|.+++-...
T Consensus 267 ~l~v~t~~ggl~~~d~~g~~~~~~~~~~~-----~~~~~~~d~~g~l~~gt------------~~G~~~~~~~~ 323 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINPDGTEKWNFETGSW-----IIATPVIDENGTIYFGT------------RNGKFYALFNL 323 (330)
T ss_dssp CEEEECTTCEEEEECTTSCEEEEEECSSC-----CCSCCEECTTCCEEEEC------------TTSCEEEEEC-
T ss_pred eEEEecCCCCEEEECCCCcEEEEEEcCCc-----cccceEEcCCCEEEEEc------------CCCeEEEEecc
Confidence 88877668889999988998877764333 25788888999988843 38999887653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-07 Score=98.61 Aligned_cols=279 Identities=13% Similarity=0.073 Sum_probs=170.6
Q ss_pred eccEEEEeeC-CCeEEeeec-cccceeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 97 s~~~las~s~-dgtiklW~~-~tg~~l~~l~g~~~~----------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
.+++|+.++. ++.+..+|. .||+.+=........ .-+++++ ++..|+.++ .| ..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~d------g~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----AN------GHLL 128 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TT------SEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CC------CEEE
Confidence 3778888888 899999999 899988665432211 1123343 345555432 33 4566
Q ss_pred EeEeccCCCCCccceeeeccc----cC-ce-EEEEeCCCCeEEEEecC-----CCcEEEeecCCCeEEEEEcCC-c----
Q 011970 165 IEYIRRGKPDSGFALFESESL----KW-PG-FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDK-H---- 228 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~----~~-~~-~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~tg~~l~tl~~~-~---- 228 (474)
..|..+|+. +|+.... .+ +. ..... +|++++.++. |+.|..+|.+||+.+.++... .
T Consensus 129 alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 129 ALDAKTGKI-----NWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp EEETTTCCE-----EEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEECCCCCE-----EEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 677788886 3432100 00 00 11122 6777776553 899999999999999877521 1
Q ss_pred ----------------------------------E-EEEEEcC-CceEEEEecCC---------CC----ccEEEEecCC
Q 011970 229 ----------------------------------V-QEIKISP-GIMLLIFNRSS---------SH----VPLKILSIED 259 (474)
Q Consensus 229 ----------------------------------V-~~vafSp-g~~la~~s~~s---------~D----~tIkLWdi~t 259 (474)
+ ..+++.| .+++....... .| ..|.-+|.+|
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 1 1256665 44554443210 12 2599999999
Q ss_pred CeEEEEEeecCc------ceeEEEEEe--cCCC--e-EEEEeCCCcEEEEECCCCceEEecc-cc-C----------Cce
Q 011970 260 GTVLKVFYHLLH------RNKKVDFIE--QFNE--K-LLVKQENENLQILDVRNAELMEVSR-TE-F----------MTP 316 (474)
Q Consensus 260 G~~L~tl~~h~~------~v~~V~F~~--~~~~--~-ll~~~~D~tIkIWDv~tg~~~~~l~-~h-~----------~~v 316 (474)
|+.+-.++...+ ...+..+.. .++. + ++.++.++.+.++|.++|+.+-... ++ . ..+
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 999988873211 111222221 2342 3 4457789999999999999875422 11 0 011
Q ss_pred ---------------------------EEEEEcCCCcEEEEEc-------------------------------------
Q 011970 317 ---------------------------SAFIFLYENQLFLTFR------------------------------------- 332 (474)
Q Consensus 317 ---------------------------~sv~Fspdg~llaS~s------------------------------------- 332 (474)
..++|+|++.+|....
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 2357888876665542
Q ss_pred -CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 333 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 333 -D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
++.|..||. +|+.+-+++..... .+..+...+.++..++. |+.|..+|..||+++.+++..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~------~~~~~~t~gg~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAA------WGGTLYTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCC------CSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEecCCCCc------cceeEEECCCEEEEEcC-----------CCeEEEEECCCCCEEEEEeCC
Confidence 478999999 59998877643321 22333334556666665 999999999999999998754
Q ss_pred C
Q 011970 411 N 411 (474)
Q Consensus 411 ~ 411 (474)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-08 Score=105.64 Aligned_cols=263 Identities=10% Similarity=0.097 Sum_probs=171.1
Q ss_pred EEEeeCCCeEEeeeccccceeeEeec--------------------------------------CCCceEEEEEEee---
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNV--------------------------------------SPDEVIRSLFYNK--- 139 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g--------------------------------------~~~~~i~sv~fsp--- 139 (474)
+.||.++|.++++-+.+++.|..+.. ...+-..-+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 57899999999999988887765321 1111122245554
Q ss_pred --CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeC-CCCeEEEEec-----------
Q 011970 140 --NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSA----------- 205 (474)
Q Consensus 140 --dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-~nGk~LaS~s----------- 205 (474)
||++|-... . ++ ..+-+-|+.+.++++.+ +.-....|..++|.. |||++|..++
T Consensus 98 ~~DG~~lfVnd--~-~~------~rVavIdl~t~~~~~ii---~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KYDGRFLFMND--K-AN------TRVARVRCDVMKCDAIL---EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEEEE--T-TT------TEEEEEETTTTEEEEEE---ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CcCCCEEEEEc--C-CC------CEEEEEECCCceEeeEE---eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 888776522 2 33 34555566666654411 110112244677754 6888876663
Q ss_pred -------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCC---------------------------
Q 011970 206 -------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSH--------------------------- 249 (474)
Q Consensus 206 -------~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D--------------------------- 249 (474)
.++++-+.|.++.+.+.++. +.+-..+++|| |.++.+++..++.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 35689999999999888886 34456688997 5555555544311
Q ss_pred --------ccEEEEecCC--CeE-EEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCc------------e
Q 011970 250 --------VPLKILSIED--GTV-LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE------------L 305 (474)
Q Consensus 250 --------~tIkLWdi~t--G~~-L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~------------~ 305 (474)
+.|.+.|.++ |+. +.++.-- ..--.|.|+ |||.++++++ .+.+|-++|+.+.+ .
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEc-CCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 2589999998 766 6666521 233567776 7888888875 79999999999763 2
Q ss_pred EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-----------CcEEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 306 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----------GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-----------G~ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
..... -...++-++|+|||...++.- |.+|-+||++ .+.+.++.-|...-..+.-..+.++|||++|
T Consensus 324 ~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 22222 124689999999996666666 9999999983 3578888877542000011235679999999
Q ss_pred EEEec
Q 011970 374 ISYCK 378 (474)
Q Consensus 374 aS~s~ 378 (474)
++.++
T Consensus 403 ~~~Nk 407 (595)
T 1fwx_A 403 VCLSK 407 (595)
T ss_dssp EEEES
T ss_pred EEcCC
Confidence 99997
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-06 Score=91.81 Aligned_cols=313 Identities=12% Similarity=0.046 Sum_probs=192.0
Q ss_pred cccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEee-------------cCCCceEEEEEEeeCCCEEEEEEeecCC
Q 011970 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN-------------VSPDEVIRSLFYNKNNDSLITVSVYASD 153 (474)
Q Consensus 88 ~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~-------------g~~~~~i~sv~fspdg~~Lis~S~~~s~ 153 (474)
...|.+|... ...|..++..+-+..++..+++...... +-+.+.|++++..++|..-+. +.
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWig-----t~ 331 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIG-----TW 331 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEE-----EB
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEE-----ec
Confidence 3568888886 5566777774556678887766433221 123467999999999986553 22
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeee-------c--cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE--
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFES-------E--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-- 222 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-------~--~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~-- 222 (474)
+ ..+..++...+.+ ..+.. . ....|.++..+ ++|.+.+ |+.++-+.++|.++++..+
T Consensus 332 ~------~Gl~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 332 G------GGINFISNAPPTF----HTWSYSPTQMNESSLSNKVVSSVCDD-GQGKLWI-GTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp S------SCEEEECSSCCSC----EEEC----CCCSSCCSSSCEEEEEEC-TTSCEEE-EEBSSCEEEEETTEEEEECC-
T ss_pred C------CeEEEeCCCCCcc----eeeccCccccccCCCCCcceEEEEEc-CCCCEEE-EeCCCcEEEEECCCCeEEEcc
Confidence 2 2344444333332 11110 0 12346678886 6887665 4444557788987665432
Q ss_pred ---EEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee---cCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 223 ---SISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 223 ---tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~---h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
.+....|.++...+++.|.++.. ++-|..+|.++|+... +.. ....+.++.. ..++.|.++.. +-|.
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~--d~~g~lwigt~-~Gl~ 472 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGNLWFGTY---LGNISYYNTRLKKFQI-IELEKNELLDVRVFYE--DKNKKIWIGTH-AGVF 472 (781)
T ss_dssp ----CCCSBEEEEEECTTSCEEEEET---TEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEE--CTTSEEEEEET-TEEE
T ss_pred CCCCCCCcceEEEEECCCCCEEEEec---cCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEE--CCCCCEEEEEC-CceE
Confidence 23456899999987666666532 3568899988876533 321 1245666653 33578888776 5688
Q ss_pred EEECCCCceEEecccc-----CCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCC
Q 011970 297 ILDVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 297 IWDv~tg~~~~~l~~h-----~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~ 371 (474)
++|..+++........ ...|.++...++|++.+...++-+-.+|.+++.++.+..... .++..|.+|+..++|+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEG-FCSNTINQIYRSSKGQ 551 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTT-CSCSCEEEEEECTTSC
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCC-CCCCeeEEEEECCCCC
Confidence 9999988765543222 467899999999999988773346678887555555543211 1233478999999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 451 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 451 (474)
+.++.. .|-|..+|..+++. ..+......|. ..|.++
T Consensus 552 lWi~T~------------~Glv~~~d~~~~~~-~~~~~~~gl~~------------------------------~~i~~i 588 (781)
T 3v9f_A 552 MWLATG------------EGLVCFPSARNFDY-QVFQRKEGLPN------------------------------THIRAI 588 (781)
T ss_dssp EEEEET------------TEEEEESCTTTCCC-EEECGGGTCSC------------------------------CCCCEE
T ss_pred EEEEEC------------CCceEEECCCCCcE-EEccccCCCCC------------------------------ceEEEE
Confidence 888642 56548889877764 34433322111 156788
Q ss_pred EEcCCCCEEEEEcCCCcE
Q 011970 452 FYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 452 afSpDg~~LaSgs~DgtV 469 (474)
..+++|+..+++ .+|.+
T Consensus 589 ~~d~~g~lW~~t-~~Gl~ 605 (781)
T 3v9f_A 589 SEDKNGNIWAST-NTGIS 605 (781)
T ss_dssp EECSSSCEEEEC-SSCEE
T ss_pred EECCCCCEEEEc-CCceE
Confidence 888888766655 44543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=93.97 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=164.9
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCc--------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE--------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~--------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
.++.|+.++.++.+..+|.+||+.+=........ .-+++++ .+..|+.++ .+ ..+.-.|.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t----~d------g~l~AlD~ 134 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGT----LD------ASVVALNK 134 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEE----TT------TEEEEEES
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEe----CC------CEEEEEEC
Confidence 4667777776444889999999988766542111 0133343 344555543 23 34555677
Q ss_pred ccCCCCCccceeeecc--------ccCceEEEEe-CCCCe-EEEEec------CCCcEEEeecCCCeEEEEEcCCc----
Q 011970 169 RRGKPDSGFALFESES--------LKWPGFVEFD-DVNGK-VLTYSA------QDSIYKVFDLKNYTMLYSISDKH---- 228 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~--------~~~~~~V~Fs-~~nGk-~LaS~s------~D~tiKlWdl~tg~~l~tl~~~~---- 228 (474)
.+|+. +|+... ....- +.+. ..+|+ .|..++ .++.|.-+|.+||+++.+.+...
T Consensus 135 ~TG~~-----~W~~~~~~~~~~~~~~~sP-~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~ 208 (582)
T 1flg_A 135 NTGKV-----VWKKKFADHGAGYTMTGAP-TIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMG 208 (582)
T ss_dssp SSCCE-----EEEEECSCGGGTCBCCSCC-EEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEE
T ss_pred CCCCE-----EeeecCCCCCcCcccccCC-EEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccc
Confidence 78886 343210 00001 2222 12344 333333 38899999999999988765321
Q ss_pred --------------------------------------EE-EEEEcC-CceEEEEecC-----------CC------C--
Q 011970 229 --------------------------------------VQ-EIKISP-GIMLLIFNRS-----------SS------H-- 249 (474)
Q Consensus 229 --------------------------------------V~-~vafSp-g~~la~~s~~-----------s~------D-- 249 (474)
+| ..++.| .+++.+.... .. |
T Consensus 209 p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~ 288 (582)
T 1flg_A 209 RLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSL 288 (582)
T ss_dssp EETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCT
T ss_pred cccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCc
Confidence 11 245555 4555544321 11 2
Q ss_pred --ccEEEEecCCCeEEEEEee--cCcc----eeEEEEEe---cCCC---eEEEEeCCCcEEEEECCCCceEEeccccC--
Q 011970 250 --VPLKILSIEDGTVLKVFYH--LLHR----NKKVDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEF-- 313 (474)
Q Consensus 250 --~tIkLWdi~tG~~L~tl~~--h~~~----v~~V~F~~---~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-- 313 (474)
..|.-+|.+||+.+-.++. |..+ ..+..+.. .+++ .++.++.|+.+.++|.++|+.+-......
T Consensus 289 ~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 289 YTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp TCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred ccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 5799999999999988863 2111 11222222 2343 35557899999999999999874322110
Q ss_pred Cce-------------------------------------------EEEEEcCCCcEEEEE-------------------
Q 011970 314 MTP-------------------------------------------SAFIFLYENQLFLTF------------------- 331 (474)
Q Consensus 314 ~~v-------------------------------------------~sv~Fspdg~llaS~------------------- 331 (474)
.+. ..++|+|+..++...
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 134567665544332
Q ss_pred --------------c-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 332 --------------R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 332 --------------s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
. +++|..||. +|+.+-+.+.+... ++-.+...|.+++.++. |+.++.
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~g~~-----------dg~l~A 511 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKA 511 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC------cccceEeCCCEEEEECC-----------CCcEEE
Confidence 1 578999999 59988776644322 22222234667777765 999999
Q ss_pred EeCCCCeEEEEecCCC
Q 011970 396 SSILTGKCLAKINATN 411 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~ 411 (474)
+|..||+.+.+++...
T Consensus 512 ~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 512 FDAKSGKELWKFQTGS 527 (582)
T ss_dssp EETTTCCEEEEEECSS
T ss_pred EECCCCCEEEEecCCC
Confidence 9999999999987654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.7e-07 Score=88.67 Aligned_cols=194 Identities=11% Similarity=0.007 Sum_probs=139.6
Q ss_pred ceEEEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEEEc-C--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 188 PGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~tl~-~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
+..++|+ +||.+.++.+. +++|.+.|+++|+.+.++. + .....+++.+ +.|.... -.++.+-++|.+|++.
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t--~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVV--WLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEE--TTCSEEEEEETTTTEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEE--ecCCEEEEEECCCCcE
Confidence 4468998 67888887764 6899999999999998875 2 2445677774 4555554 3468899999999999
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-cc----CCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TE----FMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h----~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
+.++..-...-+.++ ++++++.++..+++|.++|.++.+.+.... +. ...++.+.|. +|++++... +++|
T Consensus 99 ~~~i~~g~~~g~glt---~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKDGWGLA---TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSSCCEEE---ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCCeEEEE---ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 999973212224444 578888888778999999999988765532 21 1246788888 889998887 8899
Q ss_pred EEEeC-CCcEEEEeccCCC--------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 337 AVWNF-RGELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 337 klWd~-~G~ll~tl~gH~~--------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
.+=|. +|+.+.++.-... .-.....+.|+|+|||+.|...++ ..+++..-++.
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk----------~~~~v~~i~l~ 236 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK----------LWPKLFEIKLH 236 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET----------TCSEEEEEEEE
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC----------CCCeEEEEEEe
Confidence 99999 5999988862110 000112589999999987777665 35666665553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-06 Score=83.07 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=123.9
Q ss_pred CeEEEEecCCCcEEEeecCCCeE-------EEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~-------l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
|++|..+.. +.|+.+|+.+... +..........++++| ++.|..+.. ..+.|..+++.++.....+...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTT
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECC
Confidence 344544443 4688888765432 2222345678999997 677777643 3578999998766544333332
Q ss_pred CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc---CCcEEEEeCCCc
Q 011970 270 LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR---NRTVAVWNFRGE 344 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s---D~tIklWd~~G~ 344 (474)
......++|. ++++.|.++ ..++.|.++|+...............+..+++.| +|.++++.. .+.|...+++|+
T Consensus 78 ~~~p~~ia~d-~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 78 LGSPEGIALD-HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp CCCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred CCCccEEEEE-ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence 3456788886 456777776 4678999999875443333333446789999999 567777764 368888898887
Q ss_pred EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 345 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 345 ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
..+.+..-.... -+.++|+||++.|.-+.. ..+.|...|+.+++....+
T Consensus 157 ~~~~~~~~~~~~----P~gia~d~~~~~lyv~d~----------~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 157 NRRILAQDNLGL----PNGLTFDAFSSQLCWVDA----------GTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp CCEEEECTTCSC----EEEEEEETTTTEEEEEET----------TTTEEEEEETTEEEEEEEE
T ss_pred CcEEEEECCCCC----CcEEEEcCCCCEEEEEEC----------CCCEEEEEecCCCceEEEe
Confidence 655553211111 479999999876654432 2689999998654443333
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-07 Score=102.69 Aligned_cols=244 Identities=14% Similarity=0.123 Sum_probs=151.8
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC---cEEEEEEcC---CceEEEEecCC---CCccEEEEecCCCe
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIKISP---GIMLLIFNRSS---SHVPLKILSIEDGT 261 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~---~V~~vafSp---g~~la~~s~~s---~D~tIkLWdi~tG~ 261 (474)
+++. +|++ ..++.|+.+..+|.+||+.+.+.... ....+.-+| ++.+++..... .++.|.-+|.+||+
T Consensus 113 ~~~~--~~~v-~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 113 VALW--GDKV-YVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp CEEE--BTEE-EEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred eEEE--CCEE-EEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 4554 4654 45678999999999999998776521 111222223 55665543221 25789999999999
Q ss_pred EEEEEeec--Cc----------------------------ce-eEEEEEecCCCeEEEEeCCC-----------------
Q 011970 262 VLKVFYHL--LH----------------------------RN-KKVDFIEQFNEKLLVKQENE----------------- 293 (474)
Q Consensus 262 ~L~tl~~h--~~----------------------------~v-~~V~F~~~~~~~ll~~~~D~----------------- 293 (474)
++-++... .. .+ ..+++. +.++.+.++..++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 99888621 00 01 135554 4567777776555
Q ss_pred --cEEEEECCCCceEEecc--ccCC-------ceEEEEEcCCCc---EEEEEc-CCcEEEEeC-CCcEEEEeccCC-CCc
Q 011970 294 --NLQILDVRNAELMEVSR--TEFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDHL-LWH 356 (474)
Q Consensus 294 --tIkIWDv~tg~~~~~l~--~h~~-------~v~sv~Fspdg~---llaS~s-D~tIklWd~-~G~ll~tl~gH~-~~~ 356 (474)
.|.-+|..||+.+-... .|.. .+....+..||+ +++.++ ||.+.++|. +|+++...+-.. .|.
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 49999999999875433 2331 222223345776 677777 999999999 599985433211 110
Q ss_pred C-------------C----------C-------CeeEEEECCCCCEEEEEecCCC-----c-------cc----------
Q 011970 357 P-------------D----------C-------NTNNIYITSDQDLIISYCKAEP-----E-------DQ---------- 384 (474)
Q Consensus 357 ~-------------~----------~-------~v~svafSpDg~~LaS~s~~~~-----~-------~~---------- 384 (474)
. + | +-..++|+|+..++......-+ . ..
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0 0 0 0013788898777664221000 0 00
Q ss_pred --c-ccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 011970 385 --W-MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 461 (474)
Q Consensus 385 --~-~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La 461 (474)
. ....+|+|.-||+.||+.+.+.+.+. .++...+...|..|+
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPT-----------------------------------HWNGGTLSTAGNLVF 473 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCEEEETTTEEE
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCC-----------------------------------CCcCceeEeCCCEEE
Confidence 0 12346999999999999998876554 222334455788899
Q ss_pred EEcCCCcEEEcc
Q 011970 462 TGNRHGLVHVWS 473 (474)
Q Consensus 462 Sgs~DgtVklWd 473 (474)
.|+.|+.|++||
T Consensus 474 ~g~~dg~l~a~d 485 (668)
T 1kv9_A 474 QGTAAGQMHAYS 485 (668)
T ss_dssp EECTTSEEEEEE
T ss_pred EECCcccchhhh
Confidence 999999999987
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-06 Score=95.73 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=171.6
Q ss_pred eccEEEEeeC-CCeEEeeec-cccceeeEeecCCC----------ceEEEEEEeeCCCE----EEEEEeecCCCccceee
Q 011970 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPD----------EVIRSLFYNKNNDS----LITVSVYASDNFSSLKC 160 (474)
Q Consensus 97 s~~~las~s~-dgtiklW~~-~tg~~l~~l~g~~~----------~~i~sv~fspdg~~----Lis~S~~~s~d~s~Lk~ 160 (474)
.+++|+.++. ++.+..+|. .||+.+=....... ...+.++++|.+.. |+.++ .|
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t----~d------ 130 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ----LD------ 130 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC----TT------
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc----CC------
Confidence 3788888888 899999999 89998866543221 11356777765555 65533 33
Q ss_pred eEEEEeEeccCCCCCccceeeeccc----c-Cce-EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEEEcCC-c
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESL----K-WPG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISDK-H 228 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~----~-~~~-~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~~-~ 228 (474)
..+.-.|..+|+. +|+.... . .+. .-... +|++++.++ .|+.|.-+|.+||+++..+... .
T Consensus 131 g~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 131 GNVAALNAETGET-----VWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp SEEEEEETTTCCE-----EEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CEEEEEECCCCCE-----EEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 3555567788886 3443100 0 000 11222 677776554 4899999999999999876521 1
Q ss_pred --------------------------------------EE-EEEEcC-CceEEEEecCC---------C----CccEEEE
Q 011970 229 --------------------------------------VQ-EIKISP-GIMLLIFNRSS---------S----HVPLKIL 255 (474)
Q Consensus 229 --------------------------------------V~-~vafSp-g~~la~~s~~s---------~----D~tIkLW 255 (474)
+| ..++.| ++++....... . ...|.-+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 12 245554 45555443211 0 1378999
Q ss_pred ecCCCeEEEEEeecCccee------E-EEEE-e-cCCC--eEEE-EeCCCcEEEEECCCCceEEeccc-c----------
Q 011970 256 SIEDGTVLKVFYHLLHRNK------K-VDFI-E-QFNE--KLLV-KQENENLQILDVRNAELMEVSRT-E---------- 312 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~------~-V~F~-~-~~~~--~ll~-~~~D~tIkIWDv~tg~~~~~l~~-h---------- 312 (474)
|.+||+.+-.++...+..+ + +-+- + .+++ .+++ ++.++.+.++|.++|+++-...- .
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 9999999988874322111 1 1111 1 2342 4444 67999999999999998753210 0
Q ss_pred -CCce---------------------------EEEEEcCCCcEEEEE---------------------------------
Q 011970 313 -FMTP---------------------------SAFIFLYENQLFLTF--------------------------------- 331 (474)
Q Consensus 313 -~~~v---------------------------~sv~Fspdg~llaS~--------------------------------- 331 (474)
...+ ...+|+|+.+++...
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0000 145677777766442
Q ss_pred -------cCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 332 -------RNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 332 -------sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.++.|..||. +|+.+-+.+-... +++-.++..|.++..++. |+.++.+|..||+.
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~-----------dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDL 506 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECC-----------CCeEEEEECCCCCE
Confidence 2368999999 5998876642211 111123335666666765 99999999999999
Q ss_pred EEEecCCC
Q 011970 404 LAKINATN 411 (474)
Q Consensus 404 l~tl~gH~ 411 (474)
+.+++-..
T Consensus 507 lW~~~l~~ 514 (599)
T 1w6s_A 507 LWKFKIPS 514 (599)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99886543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-07 Score=95.74 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=130.1
Q ss_pred CCCeE-EEEecCCCcEEEeecCCC----eEEEEEc--------C-CcEEEEEEcCCceEEEEecCCC----CccEEEEec
Q 011970 196 VNGKV-LTYSAQDSIYKVFDLKNY----TMLYSIS--------D-KHVQEIKISPGIMLLIFNRSSS----HVPLKILSI 257 (474)
Q Consensus 196 ~nGk~-LaS~s~D~tiKlWdl~tg----~~l~tl~--------~-~~V~~vafSpg~~la~~s~~s~----D~tIkLWdi 257 (474)
+++++ ++++-.+++|.|.|+++- +...++. + ..=..+..+|++++++. .++. .+.|-+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~-~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISA-LGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEE-EEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEc-CCCcCCCCCCeEEEEEC
Confidence 35655 566778899999999865 6778883 1 13456888997744433 3221 257999999
Q ss_pred CCCeEEEEEeecCc---ceeEEEEEecCCCeEEEEe-------------------CCCcEEEEECCCCceEEeccc--cC
Q 011970 258 EDGTVLKVFYHLLH---RNKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNAELMEVSRT--EF 313 (474)
Q Consensus 258 ~tG~~L~tl~~h~~---~v~~V~F~~~~~~~ll~~~-------------------~D~tIkIWDv~tg~~~~~l~~--h~ 313 (474)
+|++++.+.+-..+ --..+.|+ |++..++++. .+.+|.+||+.+++.++++.- ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 99999999972111 12345556 5556666663 379999999999988876443 22
Q ss_pred CceEEEEE--cCCCcEEEEEc-------CCcEEEEeCC-CcE--EEEe--ccC--CCCcC---------CCCeeEEEECC
Q 011970 314 MTPSAFIF--LYENQLFLTFR-------NRTVAVWNFR-GEL--VTSF--EDH--LLWHP---------DCNTNNIYITS 368 (474)
Q Consensus 314 ~~v~sv~F--spdg~llaS~s-------D~tIklWd~~-G~l--l~tl--~gH--~~~~~---------~~~v~svafSp 368 (474)
..+..+.| +|+|+++-.++ +++|-+|..+ |+. ++.+ ... ...++ ......|.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 45666655 99998755432 4578777764 542 2221 110 00000 01146899999
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCC---CCeEEEEec
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKIN 408 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~ 408 (474)
||++|-.++. ..++|.++|+. +.+.+.++.
T Consensus 331 DGrfLYVSnr----------g~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 331 DDKFLYLSLW----------GIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TSCEEEEEET----------TTTEEEEEECSSTTSCEEEEEEE
T ss_pred CCCEEEEEeC----------CCCEEEEEEecCCCCcEEEEEEE
Confidence 9999998776 26899999985 346666664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=102.68 Aligned_cols=195 Identities=10% Similarity=0.009 Sum_probs=136.0
Q ss_pred CCeEEE-EecCCCcEEEeecCCCeEEE--EEc-CCcEEEEEE-c-C-CceEEEEec---------------CCCCccEEE
Q 011970 197 NGKVLT-YSAQDSIYKVFDLKNYTMLY--SIS-DKHVQEIKI-S-P-GIMLLIFNR---------------SSSHVPLKI 254 (474)
Q Consensus 197 nGk~La-S~s~D~tiKlWdl~tg~~l~--tl~-~~~V~~vaf-S-p-g~~la~~s~---------------~s~D~tIkL 254 (474)
||++|- ....+..|-+-|+++.++.. ++. +.....++| + | ++++.+++. ...+.++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 677654 44456679999999999988 554 466889998 5 7 555555431 123468999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC--------------------------------------cEE
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--------------------------------------NLQ 296 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~--------------------------------------tIk 296 (474)
.|.++.+.+.++.-- ..-.-++++ +++..+.+++++. .|.
T Consensus 180 ID~~t~~v~~qI~Vg-g~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVS-GNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeC-CCccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999999888721 122445655 5677777776442 588
Q ss_pred EEECCC--Cce-EEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-Cc------------EEEEeccCCCCcCC
Q 011970 297 ILDVRN--AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GE------------LVTSFEDHLLWHPD 358 (474)
Q Consensus 297 IWDv~t--g~~-~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~------------ll~tl~gH~~~~~~ 358 (474)
+.|.++ ++. +....- ...+..+.|+|||+++..+. +.+|.+.|+. .+ .+.+.+--..
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g---- 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG---- 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC----
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC----
Confidence 999998 544 333211 12566799999999887776 9999999996 32 4455543333
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----------CeEEEEecCCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKINATN 411 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t----------G~cl~tl~gH~ 411 (474)
-+.++|+||| .+-.... -|++|-.||+.+ .+.+.++.-|-
T Consensus 333 --P~h~aF~~dG-~aY~t~~----------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 333 --PLHTAFDGRG-NAYTSLF----------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp --EEEEEECTTS-EEEEEET----------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred --cceEEECCCC-eEEEEEe----------cCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 3789999999 6555443 389999999987 67888887764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-07 Score=88.26 Aligned_cols=205 Identities=11% Similarity=0.096 Sum_probs=136.2
Q ss_pred CeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeE--EEEEecCCCeEEEEe-C
Q 011970 218 YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVKQ-E 291 (474)
Q Consensus 218 g~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~--V~F~~~~~~~ll~~~-~ 291 (474)
++.+.+++. ...+.+.|++ +.|..+....+...|+..|++||+.++++.-. ...+. +++ ++++|.... .
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~---~g~~ly~ltw~ 105 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRN-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD---WKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEET-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE---ETTEEEEEESS
T ss_pred eEEEEEecCCCCcccceEEEEC-CEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE---eCCEEEEEEee
Confidence 455667752 4589999995 46655543333458999999999999998732 34444 443 467777764 6
Q ss_pred CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 292 D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
++.+.++|.++.+.+.++.... .-+.+ .+||+.|..+. +++|.++|.. .+.+.+++--....+-..+|.+.+. |
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 8999999999999998765422 33444 45666555555 7789999995 8888876542211010124667776 8
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEE
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 449 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 449 (474)
|++.|..-. +++|-+-|..||+.+++|.-....|... ......+...
T Consensus 182 G~lyan~w~-----------~~~I~vIDp~tG~V~~~Id~~~L~~~~~----------------------~~~~~~~vlN 228 (262)
T 3nol_A 182 GEIFANVWQ-----------TNKIVRIDPETGKVTGIIDLNGILAEAG----------------------PLPSPIDVLN 228 (262)
T ss_dssp TEEEEEETT-----------SSEEEEECTTTCBEEEEEECTTGGGGSC----------------------SCCSSCCCEE
T ss_pred CEEEEEEcc-----------CCeEEEEECCCCcEEEEEECCcCccccc----------------------cccCcCCceE
Confidence 887765433 7799999999999999996543200000 0001122668
Q ss_pred EEEEcCCCCEEEEEc
Q 011970 450 SLFYDEERNEIYTGN 464 (474)
Q Consensus 450 slafSpDg~~LaSgs 464 (474)
.+||+|+++.|+-.+
T Consensus 229 GIA~dp~~~~lfVTG 243 (262)
T 3nol_A 229 GIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEC
Confidence 899999999887766
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-06 Score=83.41 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=149.9
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE-EEEc--------------------CCcEEEEEEcC-CceEEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--------------------DKHVQEIKISP-GIMLLI 242 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l-~tl~--------------------~~~V~~vafSp-g~~la~ 242 (474)
+..|..++++ ++|++|.++..++.|..||..+++.. +... ......|++.| ++.|.+
T Consensus 18 ~~~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 18 SYAPNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SSCCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 4567789997 68986777778899999998876543 2211 13578999997 777777
Q ss_pred EecCCCCccEEEEecCCCeEEEEEee-----cCcceeEEEEEec-CCCeEEEEe-C-----------------CCcEEEE
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYH-----LLHRNKKVDFIEQ-FNEKLLVKQ-E-----------------NENLQIL 298 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~-----h~~~v~~V~F~~~-~~~~ll~~~-~-----------------D~tIkIW 298 (474)
+... ..|..+|..+|+. ..+.. .......+++. + +| .+.++. . ++.|..+
T Consensus 97 ~d~~---~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d-~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 97 VDCY---YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD-QRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EETT---TEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC-TTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EECC---CCEEEEeCCCCEE-EEecccCCCCcccccceEEEe-cCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence 6432 3488889876643 33321 11234667764 4 44 455542 1 3678889
Q ss_pred ECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCCc---EEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 299 DVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 299 Dv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G~---ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
|..+++..... .....+..++|+|||+ ++++-. ++.|..++++|+ -...+..... -..+++.++|++.
T Consensus 171 d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g------P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 171 DPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN------PGNIKRNADGHFW 243 (322)
T ss_dssp ETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS------EEEEEECTTSCEE
T ss_pred eCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC------CCCeEECCCCCEE
Confidence 98888754432 2345677899999998 556656 789999998642 1222221111 2679999999988
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
++......... ..+..+.|..+|. .|+.+..+...... .+..++++++
T Consensus 244 va~~~~~~~~~-~~~~~~~v~~~d~-~G~~~~~~~~~~g~------------------------------~~~~~~~~~~ 291 (322)
T 2fp8_A 244 VSSSEELDGNM-HGRVDPKGIKFDE-FGNILEVIPLPPPF------------------------------AGEHFEQIQE 291 (322)
T ss_dssp EEEEEETTSST-TSCEEEEEEEECT-TSCEEEEEECCTTT------------------------------TTSCCCEEEE
T ss_pred EEecCcccccc-cCCCccEEEEECC-CCCEEEEEECCCCC------------------------------ccccceEEEE
Confidence 87532000000 0011356888885 69988888654320 0125667777
Q ss_pred cCCCCEEEEEcCCCcEEEcc
Q 011970 454 DEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 454 SpDg~~LaSgs~DgtVklWd 473 (474)
.+|+..++....+.|..++
T Consensus 292 -~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEE
T ss_pred -eCCEEEEeecCCCceEEEe
Confidence 4676666666777776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=86.23 Aligned_cols=179 Identities=11% Similarity=0.070 Sum_probs=130.5
Q ss_pred EEEEeCCCCeEEEEecCCC--cEEEeecCCCeEEEEEc-CCcE--EEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 190 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHV--QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~--tiKlWdl~tg~~l~tl~-~~~V--~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
.++|+ ||.+..|.+.++ .|++.|+++|+.+.++. +... ..|++.. ..|.... -.++.+-++|.+|++.+.
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~lt--w~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLT--WKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEE--SSSSEEEEEETTTCCEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEE--eeCCEEEEEECccCcEEE
Confidence 58897 688888888876 99999999999988876 3333 3466654 4554443 336789999999999999
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc----ccC-CceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----TEF-MTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~----~h~-~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
+|.... .=+.++ ++++.|.++..+++|.++|..+.+.+.... ++. ..+..+.+. +|++++... +++|.+
T Consensus 122 ti~~~~-eG~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 122 SFNYDG-EGWGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EEECSS-CCCCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEECCC-CceEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence 998422 224555 457788887668889999999998776522 122 334556665 899998887 889999
Q ss_pred EeC-CCcEEEEeccCCCC-------cCCCCeeEEEECCCCCEEEEEec
Q 011970 339 WNF-RGELVTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 339 Wd~-~G~ll~tl~gH~~~-------~~~~~v~svafSpDg~~LaS~s~ 378 (474)
-|. +|+.+.++.-.... -.+...|.||++|+++.|...++
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999 59999887653211 01123589999999888887765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-06 Score=82.79 Aligned_cols=207 Identities=13% Similarity=0.116 Sum_probs=134.8
Q ss_pred CCeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCccee--EEEEEecCCCeEEEE-e
Q 011970 217 NYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK--KVDFIEQFNEKLLVK-Q 290 (474)
Q Consensus 217 tg~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~--~V~F~~~~~~~ll~~-~ 290 (474)
+++.+.+++ ...++.+.|+++ .|..++...+...|+..|+++|+.+++..-. ...+ .+++ .+++|... -
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~---~~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVA---WRDRLIQLTW 82 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEE---ETTEEEEEES
T ss_pred ceEEEEEcCCCCccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEE---eCCEEEEEEe
Confidence 345566665 256999999985 4444433333458999999999999988732 2333 3443 36777765 4
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.++.+.++|.++.+.+.++... ...+.++ +|++.|..+. +++|.++|.. .+.+.+++-.....+-..+|.+.+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 7899999999999999876543 2445654 5555555555 8899999984 8888877642211110124556654
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCE
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 448 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 448 (474)
+|++.|-.-. +..|-+-|..||+.+.+|.-....|..... . ....+..
T Consensus 159 ~G~lyanvw~-----------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~--------------------~-~~~~~vl 206 (243)
T 3mbr_X 159 NGELLANVWL-----------TSRIARIDPASGKVVAWIDLQALVPDADAL--------------------T-DSTNDVL 206 (243)
T ss_dssp TTEEEEEETT-----------TTEEEEECTTTCBEEEEEECGGGSTTTTSC--------------------C-CTTSSCE
T ss_pred CCEEEEEECC-----------CCeEEEEECCCCCEEEEEECCcCccccccc--------------------c-CCcCCce
Confidence 7887765433 678999999999999999754321110000 0 0011267
Q ss_pred EEEEEcCCCCEEEEEc
Q 011970 449 TSLFYDEERNEIYTGN 464 (474)
Q Consensus 449 ~slafSpDg~~LaSgs 464 (474)
..+||+|+++.|+-.+
T Consensus 207 NGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEC
Confidence 8899999998877665
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.6e-07 Score=87.99 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=133.5
Q ss_pred eEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeE--EEEEecCCCeEEEE-eCC
Q 011970 219 TMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVK-QEN 292 (474)
Q Consensus 219 ~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~--V~F~~~~~~~ll~~-~~D 292 (474)
+.+.+++ ....+.+.|+++ .|..+. +.++.|+..|++||+.++++ .....+. +++ ++++|... -.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~-~Ly~st--G~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~---~g~~Ly~ltw~~ 115 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQG-HFFEST--GHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS---DGERLYQLTWTE 115 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETT-EEEEEE--TTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE---CSSCEEEEESSS
T ss_pred EEEEEEcCCCccccceEEEECC-EEEEEc--CCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE---eCCEEEEEEccC
Confidence 4455565 246899999965 554443 45667999999999999888 3344444 553 46666665 478
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
+.+.++|.++++.+.++... ...+.++ +||+.|..+. +++|.++|.+ .+.+.+++--....+-..+|.+.+. ||
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 99999999999999876542 2334554 5666666666 8899999985 8888877642211110125667776 88
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
++.|.... +.+|-+-|..||+.+++|.-....|. +. +......+....
T Consensus 192 ~lyanvw~-----------s~~I~vIDp~TG~V~~~Idl~~L~~~---~~------------------~~~~~~~~vlNG 239 (268)
T 3nok_A 192 VIYANIWH-----------SSDVLEIDPATGTVVGVIDASALTRA---VA------------------GQVTNPEAVLNG 239 (268)
T ss_dssp EEEEEETT-----------CSEEEEECTTTCBEEEEEECHHHHHH---HT------------------TTCCCTTCCEEE
T ss_pred EEEEEECC-----------CCeEEEEeCCCCcEEEEEECCCCccc---cc------------------ccccCcCCceEE
Confidence 87765433 67999999999999999965321000 00 000001126788
Q ss_pred EEEcCCCCEEEEEc
Q 011970 451 LFYDEERNEIYTGN 464 (474)
Q Consensus 451 lafSpDg~~LaSgs 464 (474)
+||+|+++.|+-.+
T Consensus 240 IA~dp~~~rlfVTG 253 (268)
T 3nok_A 240 IAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCCEEEEE
T ss_pred EEEcCCCCEEEEeC
Confidence 99999988766554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.72 E-value=0.0001 Score=81.04 Aligned_cols=314 Identities=11% Similarity=0.043 Sum_probs=191.1
Q ss_pred ccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeec------CCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 89 ~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g------~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
..|.+|... +..|-.+..++-+..++..+++...+... -....|++|+..++|...|.. .+
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-----~~------- 230 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-----SK------- 230 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE-----TT-------
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-----CC-------
Confidence 457888776 55566677664566788877765443211 123569999999999977642 22
Q ss_pred EEEEeEeccCCCCCccceeeec-------cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-----------
Q 011970 162 STKIEYIRRGKPDSGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------- 223 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~-------~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t----------- 223 (474)
.+.+++..++++.. +... ....+.++..+ ++|.+.+ |...+-+.++|.++++....
T Consensus 231 Gl~~~d~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~ 304 (781)
T 3v9f_A 231 GLALFNANTETFTN----FHNNPGNIHGALSSYIFSIKQL-KDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREG 304 (781)
T ss_dssp EEEEEETTTTEEEC---------------CCCCEEEEEEC-TTSEEEE-EESSSCEEEEETTCC---------CEEECBC
T ss_pred cHheECCCCCcEEE----EEcCCCccccccCceEEEEEEC-CCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCC
Confidence 34456655554311 1110 12346678886 6888766 44434477889887764321
Q ss_pred -----EcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee----------cCcceeEEEEEecCCCeEEE
Q 011970 224 -----ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH----------LLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 224 -----l~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~----------h~~~v~~V~F~~~~~~~ll~ 288 (474)
++.+.|.++...+++.|-++.. ++-|..++..++... .+.. ....|.++.. ..++.|.+
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~lWigt~---~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWi 378 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNNIWIGTW---GGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWI 378 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCCEEEEEB---SSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEE--CTTSCEEE
T ss_pred CCCCCCCCCeEEEEEEeCCCCEEEEec---CCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEE--cCCCCEEE
Confidence 2346799999987655655532 356888888765533 2211 1234666663 33578888
Q ss_pred EeCCCcEEEEECCCCceEEec---cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEE
Q 011970 289 KQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l---~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~sva 365 (474)
+.+++-|.++|..+++..... ......|.++...++|++.+...++-+-.+|.....++.+.... .+...|.+++
T Consensus 379 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~~v~~i~ 456 (781)
T 3v9f_A 379 GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEK--NELLDVRVFY 456 (781)
T ss_dssp EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTT--TCCCCEEEEE
T ss_pred EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCC--CCCCeEEEEE
Confidence 888888999998876543321 12345789998889999988655677888998633344443211 0112378999
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccc
Q 011970 366 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 445 (474)
Q Consensus 366 fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 445 (474)
..++|++.+.. .+-|..+|..+++.......... . . ..
T Consensus 457 ~d~~g~lwigt-------------~~Gl~~~~~~~~~~~~~~~~~~~--~--~-------------------------~~ 494 (781)
T 3v9f_A 457 EDKNKKIWIGT-------------HAGVFVIDLASKKVIHHYDTSNS--Q--L-------------------------LE 494 (781)
T ss_dssp ECTTSEEEEEE-------------TTEEEEEESSSSSCCEEECTTTS--S--C-------------------------SC
T ss_pred ECCCCCEEEEE-------------CCceEEEeCCCCeEEecccCccc--c--c-------------------------cc
Confidence 99999988853 34588899888776443222110 0 0 00
Q ss_pred cCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 446 EDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 446 ~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
..|.+++.+++|+..+....+|..+
T Consensus 495 ~~i~~i~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 495 NFVRSIAQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp SCEEEEEECTTCCEEEEESSSCEEE
T ss_pred ceeEEEEEcCCCCEEEEEcCCCEEE
Confidence 2789999999999877665566544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.1e-06 Score=79.57 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=127.5
Q ss_pred EEEEeCCCCeEEEEecCC--CcEEEeecCCCeEEEEEc-CCcE--EEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 190 FVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSIS-DKHV--QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D--~tiKlWdl~tg~~l~tl~-~~~V--~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
.++|+ ++.+..|.+.+ +.|+..|+++|+.+.++. .... ..+++.. +.|.... -.++.+-++|.+|++.+.
T Consensus 25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~lt--w~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLT--WRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEE--SSSSEEEEEETTTTEEEE
T ss_pred cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEE--eeCCEEEEEECCcCcEEE
Confidence 58997 48888888876 499999999999998876 3333 3456654 4454443 336789999999999999
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc--cC---CceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EF---MTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~--h~---~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
+|.... .=+.++ +++++|.++..+++|.++|.++.+.+....- +. ..+..+.+. +|+++|... +..|.+
T Consensus 100 ti~~~~-~Gwglt---~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 100 RFRYPG-EGWALT---SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEECSS-CCCEEE---ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEeCCC-CceEEe---eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 998432 225555 4678888886689999999999987765321 11 233344433 899998887 889999
Q ss_pred EeC-CCcEEEEeccCCCC--------cCCCCeeEEEECCCCCEEEEEec
Q 011970 339 WNF-RGELVTSFEDHLLW--------HPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 339 Wd~-~G~ll~tl~gH~~~--------~~~~~v~svafSpDg~~LaS~s~ 378 (474)
-|. +|+.+.++.-.... -.+...|.||+.|+++.|...++
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999 59999877632110 01124689999999887776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-06 Score=93.05 Aligned_cols=245 Identities=10% Similarity=0.058 Sum_probs=143.4
Q ss_pred eEEEEEEe-eCCCEEEEEEee-cCCCccceeeeEEEEeEeccC-CCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 131 VIRSLFYN-KNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 131 ~i~sv~fs-pdg~~Lis~S~~-~s~d~s~Lk~~~~~iw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
.+.+..|| |||+.||-++.. |++. .++.++++.+| +.... .++. . ...++|+ |||+.|++.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~------~~l~v~dl~~g~~~l~~--~~~~--~--~~~~~Ws-pDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEV------YTIEFKRISDPSQTIAD--KVSG--T--NGEIVWG-PDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSC------EEEEEEETTCTTCCCCC--CEEE--E--CSCCEEC-SSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCce------EEEEEEECCCCCEeCCc--cccC--c--eeeEEEe-cCCCEEEEEEEC
Confidence 68899999 999999876653 3344 57889999998 74211 1111 1 2368898 799999988876
Q ss_pred -----CcEEEeecCCCe----EEEEEcC-CcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCC--eE-EEEEe-ecCcc
Q 011970 208 -----SIYKVFDLKNYT----MLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDG--TV-LKVFY-HLLHR 272 (474)
Q Consensus 208 -----~tiKlWdl~tg~----~l~tl~~-~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG--~~-L~tl~-~h~~~ 272 (474)
..|.++++.+++ +++.-.+ ....++.+||++ .|+..+.......|.++|+.++ +. ++.+. .....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 357888888764 3443332 456789999854 5555543334456899999886 33 13343 33345
Q ss_pred eeEEEEEecCCCeEEEEe-CC--C--cEEEEECCCC-ceEE-eccccCC-ceEEEEEcCCCcEEEEEc-CCcEEE--EeC
Q 011970 273 NKKVDFIEQFNEKLLVKQ-EN--E--NLQILDVRNA-ELME-VSRTEFM-TPSAFIFLYENQLFLTFR-NRTVAV--WNF 341 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~-~D--~--tIkIWDv~tg-~~~~-~l~~h~~-~v~sv~Fspdg~llaS~s-D~tIkl--Wd~ 341 (474)
.++++|. +++.|+..+ .| + .|-.+|+.++ +... ++..... .+..+.+. ++.++++.. |+..+| +|+
T Consensus 322 ~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 322 RYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5666653 377777654 33 3 4555677653 3223 2222222 44555554 455666666 886554 553
Q ss_pred -------C-CcEEEEec--cCCCCcCCCCeeEEEE------CCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 342 -------R-GELVTSFE--DHLLWHPDCNTNNIYI------TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 342 -------~-G~ll~tl~--gH~~~~~~~~v~svaf------SpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
. |+.++.+. +. ...+.| ++|++ ++++++. ...-.+|.+.|+.+|+.
T Consensus 399 ~~~~~~~~~g~~~~~l~l~~~--------~~~~~~~~~~~~~~~~~~l~~~~ss--------~~~P~~~~~~d~~~~~~- 461 (751)
T 2xe4_A 399 DSQDGVFKAGTGLREVVMEEP--------IFTVHLVESQMLEYEEPTFRMEYSS--------LATPNTWFDVSPQDHSR- 461 (751)
T ss_dssp CTTTSCCCTTTCCEECCCCCS--------SCEEEECGGGCCCTTCSCEEEEEEE--------TTEEEEEEEECTTTCCE-
T ss_pred ccccccccCCccceEECCCCc--------eeEEEeccCcccCCCCCEEEEEEeC--------CCCCCEEEEEECCCCcE-
Confidence 3 44133332 21 122445 45664 5555543 11235677888888763
Q ss_pred EEec
Q 011970 405 AKIN 408 (474)
Q Consensus 405 ~tl~ 408 (474)
..|.
T Consensus 462 ~~l~ 465 (751)
T 2xe4_A 462 TAVK 465 (751)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-05 Score=76.93 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=140.8
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.+.+..+.. . .....++++|+|+.+++ . . .+ ..+..++ ..|+.. ..+.. -..|..++|+ ++
T Consensus 22 ~~~~~~~p~-~-~~pegia~~~~g~lyv~-d--~-~~------~~I~~~d-~~g~~~---~~~~~--~~~p~gia~~-~d 82 (306)
T 2p4o_A 22 AKIITSFPV-N-TFLENLASAPDGTIFVT-N--H-EV------GEIVSIT-PDGNQQ---IHATV--EGKVSGLAFT-SN 82 (306)
T ss_dssp EEEEEEECT-T-CCEEEEEECTTSCEEEE-E--T-TT------TEEEEEC-TTCCEE---EEEEC--SSEEEEEEEC-TT
T ss_pred ceEeEeCCC-C-CCcceEEECCCCCEEEE-e--C-CC------CeEEEEC-CCCceE---EEEeC--CCCceeEEEc-CC
Confidence 445555543 2 45788999999985554 1 1 22 3555555 344431 12222 2357789998 79
Q ss_pred CeEEEEecCCC--cEEEeecCCCeEEEEE--cC-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE-EEEEe----
Q 011970 198 GKVLTYSAQDS--IYKVFDLKNYTMLYSI--SD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV-LKVFY---- 267 (474)
Q Consensus 198 Gk~LaS~s~D~--tiKlWdl~tg~~l~tl--~~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~-L~tl~---- 267 (474)
|+++++..... .|-.+|..+|+..... .. ..-..+++.+++++++... ..+.|...|..+|+. +....
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~--~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET--TTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC--CCCeEEEEeCCCCcEeEEEECCccc
Confidence 99877664432 3555677888754322 22 3345677777777766642 356788888776532 21111
Q ss_pred -----ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC-Cce--EEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 268 -----HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 268 -----~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t-g~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
.....-..+ .++++.|.++ ...+.|..+|+.. |+. .+++. ....+..+++.++|+++++.. .+.|.
T Consensus 161 ~~~~~~~~~~pngi---s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 161 RSNSESVFPAANGL---KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSSTTCCSCSEEEE---EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred cccccCCCCcCCCc---CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEE
Confidence 111122344 3567777776 5788999999875 443 12221 124577899999999998887 88999
Q ss_pred EEeCCCcEEE--EeccCCCCcCCCCeeEEEEC---CCCCEEEEEe
Q 011970 338 VWNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYC 377 (474)
Q Consensus 338 lWd~~G~ll~--tl~gH~~~~~~~~v~svafS---pDg~~LaS~s 377 (474)
++|.+|++.. .+.....+ ..+++|. ||++.|...+
T Consensus 237 ~~~~~G~~~~~~~~~~~~~~-----p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 237 RIAPDRSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EECTTCCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEEE
T ss_pred EECCCCCEEEEeecccccCC-----ceEEEEecccCCCCEEEEEC
Confidence 9999898743 34332222 5799999 8987666554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-06 Score=83.07 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=128.6
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCc--EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH--VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~--V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.++|+ ++.+..+.+.++.|++.|+++|+.+.++-+.. -..+++..+ .|.... -.++.+.++|.+|++.+++|.
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~lt--w~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLT--WTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEE--SSSCEEEEEETTTTEEEEEEE
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEE--ccCCEEEEEECCcCcEEEEEe
Confidence 58897 58999999999999999999999776653233 244777655 444443 336789999999999999998
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc--cC---CceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~--h~---~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
.- ..-+.++ ++++.|.++..+++|.++|.++.+.+....- +. ..+..+.|. +|+++|... +.+|.+=|.
T Consensus 134 ~~-~eGwGLt---~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 134 YS-GEGWGLC---YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp CS-SCCCCEE---EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred CC-CceeEEe---cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 42 2235666 4578888887799999999999988765321 11 234555665 889998887 889999999
Q ss_pred -CCcEEEEeccCCC--------CcCCCCeeEEEECCCCCEEEEEec
Q 011970 342 -RGELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 342 -~G~ll~tl~gH~~--------~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+|+.+.++.-... ...+...|.||+.|+++.|...++
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 4999887763210 001124689999998766665443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-05 Score=77.51 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=126.0
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE--E-EcC---CcEEEEEEcC-CceEEEEecC------------
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--S-ISD---KHVQEIKISP-GIMLLIFNRS------------ 246 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~--t-l~~---~~V~~vafSp-g~~la~~s~~------------ 246 (474)
..|..++|++.+|++++..... -+..+|.++++... . ..+ .....|++.| ++.+.++...
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3577899983378877765444 47888987665321 1 111 3578899999 7777666432
Q ss_pred ---CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCc--eEEeccccCCceEEEE
Q 011970 247 ---SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE--LMEVSRTEFMTPSAFI 320 (474)
Q Consensus 247 ---s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~--~~~~l~~h~~~v~sv~ 320 (474)
..++.|..+|..+|+....... ...-..|+|. +++..|.++ ..++.|..+|+.+.. ..+.+..... +..++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-CccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 1236688899888876443332 2334568876 566667766 567899999987532 1122211122 88899
Q ss_pred EcCCCcEEEEEcC-----------CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 321 FLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 321 Fspdg~llaS~sD-----------~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
+.++|++.++... +.|..+|.+|+.+..+........ ..+..+++ .+|++.++...
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~~~~~~~-~~g~L~v~~~~----------- 302 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EHFEQIQE-HDGLLYIGTLF----------- 302 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SCCCEEEE-ETTEEEEECSS-----------
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-ccceEEEE-eCCEEEEeecC-----------
Confidence 9999999888643 567788878999988875532100 11456766 57777776433
Q ss_pred CCeEEEEeC
Q 011970 390 AGSINVSSI 398 (474)
Q Consensus 390 DgtIklWdi 398 (474)
.+.|..+++
T Consensus 303 ~~~i~~~~~ 311 (322)
T 2fp8_A 303 HGSVGILVY 311 (322)
T ss_dssp CSEEEEEEC
T ss_pred CCceEEEec
Confidence 677888876
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=87.62 Aligned_cols=291 Identities=9% Similarity=-0.036 Sum_probs=159.8
Q ss_pred EEEEee-CCCEEEEEEeecCCCcc--ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-CCCc
Q 011970 134 SLFYNK-NNDSLITVSVYASDNFS--SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSI 209 (474)
Q Consensus 134 sv~fsp-dg~~Lis~S~~~s~d~s--~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~t 209 (474)
++++.| +|+.++.++.+. +.|. .-....+.+||+.+++...- +.....+..+-..+++. +||++++.|+ .+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~-~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRN-DAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCC-TTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEEC-TTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccc-cccccCCCCeEEEEEEeCCCCcEEeC-cccCCCCCCccccccCC-CCCCEEEeCCCCCCc
Confidence 667778 888888766432 1111 01123678899988886332 11211122232357886 7999999998 4568
Q ss_pred EEEeecCCCeEEE--EEcC-CcEEEEEEcC-CceEEEEecCCC---CccEEEEecCCCeEEEEE----ee-cCcceeEEE
Q 011970 210 YKVFDLKNYTMLY--SISD-KHVQEIKISP-GIMLLIFNRSSS---HVPLKILSIEDGTVLKVF----YH-LLHRNKKVD 277 (474)
Q Consensus 210 iKlWdl~tg~~l~--tl~~-~~V~~vafSp-g~~la~~s~~s~---D~tIkLWdi~tG~~L~tl----~~-h~~~v~~V~ 277 (474)
+.+||..+.+-.. .++. ..-.++++.| |.++++++.... -.++.+||.++++....- .. ...+...+
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~- 345 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL- 345 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG-
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce-
Confidence 9999998876432 2222 1223455664 555444431111 146999999998754320 00 00000000
Q ss_pred EEecCCCeEEEEeC---------CCcEEEEECCCCceEEeccccC---------CceEEEEEc-CCCcEEEEEc-CC---
Q 011970 278 FIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEF---------MTPSAFIFL-YENQLFLTFR-NR--- 334 (474)
Q Consensus 278 F~~~~~~~ll~~~~---------D~tIkIWDv~tg~~~~~l~~h~---------~~v~sv~Fs-pdg~llaS~s-D~--- 334 (474)
+ ..++..++.++. ...+..||..+.........+. ..-.++.|. .++++++.|+ +.
T Consensus 346 ~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 Y-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp G-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred e-ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 0 012223334433 4567899999887554332221 133566665 5899999886 43
Q ss_pred --------cEEEEeCC-CcEEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 335 --------TVAVWNFR-GELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 335 --------tIklWd~~-G~ll~tl--~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
+|.+||.. ++..... .-+... . --+.++.|||++++.|+......--....-.++.+||..+++.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R---~-~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFAR---T-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCC---B-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCc---c-cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 78889985 5543332 112211 1 1345678999999998752110000001136789999988765
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.. +.... . ++. ...+..+.|||+.|+.|+.
T Consensus 501 ~~-~~~~~---~-----~R~-----------------------~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 501 YK-QNPNS---I-----VRV-----------------------YHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EE-CCCCS---S-----CCC-----------------------TTEEEEECTTSCEEEEECC
T ss_pred ee-cCCCC---C-----ccc-----------------------cccHhhcCCCcEEEecCCC
Confidence 43 22111 0 000 2234667899999999985
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.8e-06 Score=85.63 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=143.1
Q ss_pred ccEEEEeeCCCeEEeeecccc----ceeeEeec------CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 98 RDIVFALAHSGVCAAFSRETN----RRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg----~~l~~l~g------~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
..+++++..+.+|.++|..+. +..+++.. .....=..+..+||| .+|++..+. +. ..+ ..+-+-|
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-~g--~~~-g~v~vlD 170 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-EG--EGP-GGILMLD 170 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-TS--CSC-CEEEEEC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-CC--CCC-CeEEEEE
Confidence 366788889999999999887 77777730 001123567889999 777655331 10 011 3566777
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-------------------CCCcEEEeecCCCeEEEEEcC--
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-------------------QDSIYKVFDLKNYTMLYSISD-- 226 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-------------------~D~tiKlWdl~tg~~l~tl~~-- 226 (474)
..+++.....+.=. ........+-|+ |+++++.++. .+.+|.+||+.+++.+.++.-
T Consensus 171 ~~T~~v~~~~~~~~-~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDR-GDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBC-TTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCCeEEEEEccCC-CCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 77777643222100 011111147788 7999888875 378999999999999988873
Q ss_pred --CcEEEEEE--cCCceEEEEecCC-----CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 227 --KHVQEIKI--SPGIMLLIFNRSS-----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 227 --~~V~~vaf--Spg~~la~~s~~s-----~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
..-.+|+| +|++..+-... . .+.+|-+|....|+. + .+++
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~-e~~~~~Lss~V~v~~~d~g~~----~--------------------------~~~v 297 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINM-VVSLKDLSSSIWLWFYEDGKW----N--------------------------AEKV 297 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEE-EEETTTCCEEEEEEEEETTEE----E--------------------------EEEE
T ss_pred CCCccceeEeeECCCCCEEEEEE-eeeccCCCceEEEEEecCCce----e--------------------------EEEE
Confidence 24567877 88654433211 1 235666655444321 1 1122
Q ss_pred EECCCCceEEec-------cccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC--C--cEEEEeccCCC---------C
Q 011970 298 LDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--G--ELVTSFEDHLL---------W 355 (474)
Q Consensus 298 WDv~tg~~~~~l-------~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G--~ll~tl~gH~~---------~ 355 (474)
.|+.+.+...++ .+-...+..+.+||||++|-.+. .++|.++|+. + +++..+.-... .
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 222222111111 11123578899999999887775 8899999983 3 45554432100 0
Q ss_pred -cCCCCeeEEEECCCCCEEEEEe
Q 011970 356 -HPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 356 -~~~~~v~svafSpDg~~LaS~s 377 (474)
.... =..+++||||++|..+.
T Consensus 378 ~~~gg-Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGA-PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSC-CCCEEECTTSSEEEEEC
T ss_pred cCCCC-CCEEEEcCCCCEEEEEc
Confidence 0000 15799999999999876
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-05 Score=86.42 Aligned_cols=266 Identities=8% Similarity=-0.031 Sum_probs=152.4
Q ss_pred eccEEEEeeCCC-----------eEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 97 ARDIVFALAHSG-----------VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 97 s~~~las~s~dg-----------tiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.+++++.|+.+. .+.+||..+++ .+..+...+.....++++.+||+.++.++. ++ ..+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~---~~------~~v 267 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN---DA------KKT 267 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS---ST------TCE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC---CC------Cce
Confidence 377888876543 68899999886 344554434344456888999998887432 22 257
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-CC-----CcEEEeecCCCeEEEE-------EcCCcEE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QD-----SIYKVFDLKNYTMLYS-------ISDKHVQ 230 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-~D-----~tiKlWdl~tg~~l~t-------l~~~~V~ 230 (474)
.++|..+++....-++-. -++-..+++. +||++++.|+ .+ .++.+||.++.+-... +.... .
T Consensus 268 ~~yd~~t~~W~~~~~~~~---~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~ 342 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQV---ARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-K 342 (656)
T ss_dssp EEEEGGGTEEEECCCCSS---CCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-T
T ss_pred EEecCcCCceeECCCCCc---cccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-c
Confidence 788887776422111111 1121245554 5999999999 44 5799999988774332 00000 0
Q ss_pred EEEEcC-CceEEEEecC------CCCccEEEEecCCCeEEEEEeecCc---------ceeEEEEEecCCCeEEEEeCCC-
Q 011970 231 EIKISP-GIMLLIFNRS------SSHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLVKQENE- 293 (474)
Q Consensus 231 ~vafSp-g~~la~~s~~------s~D~tIkLWdi~tG~~L~tl~~h~~---------~v~~V~F~~~~~~~ll~~~~D~- 293 (474)
..++.. +..++....+ .....+..||.++.+.......+.. .-..|.|...++..+++|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 001111 2222222111 1234689999998876655443211 1244555333344444466432
Q ss_pred ----------cEEEEECCCCceEEec--cccCCce-EEEEEcCCCcEEEEEc-C-----------CcEEEEeCCCcEEEE
Q 011970 294 ----------NLQILDVRNAELMEVS--RTEFMTP-SAFIFLYENQLFLTFR-N-----------RTVAVWNFRGELVTS 348 (474)
Q Consensus 294 ----------tIkIWDv~tg~~~~~l--~~h~~~v-~sv~Fspdg~llaS~s-D-----------~tIklWd~~G~ll~t 348 (474)
.|.+||..+.+..+.. .-..... .+.+..|||++++.++ + .++.+||.....-..
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 7889999988876654 2122222 2346789999999987 5 578999985333223
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+..-. ++........+.|||++++.|+.
T Consensus 503 ~~~~~--~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 503 QNPNS--IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCC--CccccccHhhcCCCcEEEecCCC
Confidence 32111 11112234567899999999974
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-05 Score=77.10 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=140.0
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+.+|..|+|++.+|.+..+....+.|..+++.++.....+.. .....+++.+ ++.|..+. .....|.+.++.. +
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d--~~~~~I~~~~~dg-~ 191 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLDG-A 191 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE--TTTTEEEECBTTS-C
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc--CCCCeEEEEeCCC-C
Confidence 567889999976888888888889999999876654333332 3456799996 66666553 3356788888754 4
Q ss_pred EEEEE-eecCcceeEEEEEecCCCeEEEEe-CC-CcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcE
Q 011970 262 VLKVF-YHLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTV 336 (474)
Q Consensus 262 ~L~tl-~~h~~~v~~V~F~~~~~~~ll~~~-~D-~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tI 336 (474)
...++ ......-..+++. |.++.|..+. .+ +.|...|+...............+..++|+| +++++.+-+ .+.|
T Consensus 192 ~~~~l~~~~l~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I 270 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALH-PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270 (386)
T ss_dssp SCEEEECSSCSCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred ceEEeecCCCCCCcEEEEE-cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence 33333 3334555778876 5567777764 44 7888889775544444445566899999996 566667766 8899
Q ss_pred EEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 337 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 337 klWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
...|++|.-.+++-.....+ -.+|++ .++.+..+-.. .+.|...|..+|+.+.++...
T Consensus 271 ~~~d~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 271 ERANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNK 328 (386)
T ss_dssp EEECTTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECS
T ss_pred EEEeCCCCeeEEEEECCCCC----ceEEEE-ECCEEEEeeCC-----------CCeEEEEECCCCcceEEEccC
Confidence 99999876444443222223 367888 45555555432 788999997799988888653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-05 Score=78.48 Aligned_cols=257 Identities=10% Similarity=0.077 Sum_probs=148.4
Q ss_pred cccCceEEEEeC-CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCC-ccEEEEecCC
Q 011970 184 SLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSH-VPLKILSIED 259 (474)
Q Consensus 184 ~~~~~~~V~Fs~-~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D-~tIkLWdi~t 259 (474)
.+..|..|+|+| .+|.+.++... +.|+.+|+++++....+. ...-..|+|+| |.+|.++...+.. ...-+|-..+
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 367888999983 24665555444 889999998877554444 35688999997 5546666432211 1122333344
Q ss_pred CeEE--EEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec-cccCCceEEEEEcCCCc-EEEEEc-C
Q 011970 260 GTVL--KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR-N 333 (474)
Q Consensus 260 G~~L--~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspdg~-llaS~s-D 333 (474)
|... ..+.. ..+...+++. |+++.|.++ ..++.|..+|..+++..... .+....+..++|+|+|+ ++++-. +
T Consensus 214 g~~~~~~~l~~-~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred Cceeeeeeecc-CCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 4332 33332 2345667765 545666665 47789999999887763332 22235789999999999 677766 8
Q ss_pred CcEEEEeCCC---cE--EEEeccC---CCCcCC-------CCee-EEEEC--------CCCCEEEEEecCCCccccccCC
Q 011970 334 RTVAVWNFRG---EL--VTSFEDH---LLWHPD-------CNTN-NIYIT--------SDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 334 ~tIklWd~~G---~l--l~tl~gH---~~~~~~-------~~v~-svafS--------pDg~~LaS~s~~~~~~~~~~s~ 389 (474)
+.|..++.+| ++ +.++.+. ..+... ..-. .+++. ++|.+.++=..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~----------- 360 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE----------- 360 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-----------
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-----------
Confidence 8999988754 22 3344432 111000 0012 45553 45777776433
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC-CCEEEEEcCCCc
Q 011970 390 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGL 468 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD-g~~LaSgs~Dgt 468 (474)
.+.|+.+| .+|+. .++-+... .+. .| +. +........|..-+.|+++|+ |..+++-...+.
T Consensus 361 n~~I~~i~-~~G~v-~~~~g~g~--~~~-------~G---~~----dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 422 (430)
T 3tc9_A 361 NHCIRILT-PQGRV-TTFAGRGS--NGT-------SG---YN----DGDLRQEARFNHPEGIVYDEERECFFIGDRENRR 422 (430)
T ss_dssp GTEEEEEC-TTSEE-EEEEECCT--TSS-------SS---CB----CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CcEEEEEC-CCCcE-EEEEeCCC--CCC-------Cc---cc----CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 57899988 57854 44444310 000 00 00 000001112446789999995 666666666677
Q ss_pred EEEc
Q 011970 469 VHVW 472 (474)
Q Consensus 469 VklW 472 (474)
|+..
T Consensus 423 Ir~i 426 (430)
T 3tc9_A 423 IRKI 426 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.9e-05 Score=75.76 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=139.0
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+..|..|+|++.++.+..+....+.|..+++.++.....+.. .....+++.+ ++.|..+. .....|.+.++. |+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d--~~~~~I~~~~~d-G~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLD-GA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETT-SC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc--CCCCeEEEEcCC-CC
Confidence 456778999977888888888889999999876654333332 3567899996 66666553 335689999975 44
Q ss_pred EEEEEe-ecCcceeEEEEEecCCCeEEEEe-CC-CcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcE
Q 011970 262 VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTV 336 (474)
Q Consensus 262 ~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D-~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tI 336 (474)
...++. .....-..+++. |.++.|..+. .+ +.|...|+...............+..++|+| +++++.+-+ .+.|
T Consensus 149 ~~~~l~~~~l~~P~~iavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I 227 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALH-PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227 (349)
T ss_dssp SCEEEECTTCSCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEeCCCCCcceEEEe-cCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence 434433 334455788876 5567777764 44 7888888765444333344567899999996 566677766 8899
Q ss_pred EEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 337 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 337 klWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
...|++|.-.+++-.....+ -.+|++ .++.+..+-.. .+.|...|-.+|+.+.++...
T Consensus 228 ~~~~~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~ 285 (349)
T 3v64_C 228 ERANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNK 285 (349)
T ss_dssp EEEETTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECS
T ss_pred EEEeCCCCceEEEEeCCCCC----ceEEEE-ECCEEEEecCC-----------CCeEEEEEccCCCccEEeccC
Confidence 99999876544433222222 367888 45555555332 688888887789888887643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.8e-05 Score=77.51 Aligned_cols=257 Identities=10% Similarity=0.072 Sum_probs=150.8
Q ss_pred cccCceEEEEeCC--CCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCC-c-cEEEEecC
Q 011970 184 SLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSH-V-PLKILSIE 258 (474)
Q Consensus 184 ~~~~~~~V~Fs~~--nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D-~-tIkLWdi~ 258 (474)
.+..|..|+|++. +|.+.++-.. +.|+.+|+++++....+. ......|+|+|++.|.++...... . .+-..+..
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 4678889999831 4777766554 899999998888655444 356899999985546655432111 1 12222322
Q ss_pred CCeE-EEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec--cccCCceEEEEEcCCCc-EEEEEc-
Q 011970 259 DGTV-LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQ-LFLTFR- 332 (474)
Q Consensus 259 tG~~-L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~-llaS~s- 332 (474)
.+.. -..+.. ...-..+++. +.++.|.++ ..++.|+.+|..+|+....+ .+.......++|+|+|+ ++++-.
T Consensus 216 ~~~~~~~~~~~-~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 216 SGFTERLSLCN-ARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GTTCCEEEEEE-CSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCeeccccccc-cCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2211 012221 2333556664 435666665 47789999999888773322 12223455799999998 777777
Q ss_pred CCcEEEEeCC---CcE--EEEeccCC---CCcC-------CCCeeEEEE---------CCCCCEEEEEecCCCccccccC
Q 011970 333 NRTVAVWNFR---GEL--VTSFEDHL---LWHP-------DCNTNNIYI---------TSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 333 D~tIklWd~~---G~l--l~tl~gH~---~~~~-------~~~v~svaf---------SpDg~~LaS~s~~~~~~~~~~s 388 (474)
++.|..++.+ |++ ..++.+.. .+.. -..-..++| .++|.+.++-..
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~---------- 363 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD---------- 363 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT----------
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC----------
Confidence 8899998874 332 23444331 1100 001256999 888988887433
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCC-CCCccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEEcCC
Q 011970 389 SAGSINVSSILTGKCLAKINATNCS-PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNRH 466 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS-pDg~~LaSgs~D 466 (474)
.+.|+..+ .+|+ +.++-|.... ..+. .+........|..-++|+++ ++|..+++=...
T Consensus 364 -n~~I~~~~-~~G~-v~t~~G~g~~~~~G~-----------------~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 364 -SHTVRVLT-PEGR-VTTYAGRGNSREWGY-----------------VDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp -TTEEEEEC-TTSE-EEEEECCCTTCSSCC-----------------BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred -CCEEEEEC-CCCC-EEEEEeCCCCCcccc-----------------CCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 68899998 4785 4455543210 0000 00000001224467899999 777777776677
Q ss_pred CcEEEcc
Q 011970 467 GLVHVWS 473 (474)
Q Consensus 467 gtVklWd 473 (474)
+.|+..+
T Consensus 424 ~rIr~i~ 430 (433)
T 4hw6_A 424 HRVRKIA 430 (433)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 7777653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-05 Score=85.37 Aligned_cols=244 Identities=9% Similarity=0.022 Sum_probs=146.7
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCc---EEEEEEcC---CceEEEEecCC---CCccEEEEecCCCe
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH---VQEIKISP---GIMLLIFNRSS---SHVPLKILSIEDGT 261 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~---V~~vafSp---g~~la~~s~~s---~D~tIkLWdi~tG~ 261 (474)
++.. +|+++ .++.|+.+..+|.+||+.+.+..... -..+.-+| ++++++..... .++.|.-+|.+||+
T Consensus 111 ~~~~--~~~v~-v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 111 LAYG--AGQIV-KKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp CEEE--TTEEE-EECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred cEEE--CCEEE-EEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 4554 56544 45679999999999999987764210 00111123 56666553221 16789999999999
Q ss_pred EEEEEeecCcc-------------------------------------e-eEEEEEecCCCeEEEEeC------------
Q 011970 262 VLKVFYHLLHR-------------------------------------N-KKVDFIEQFNEKLLVKQE------------ 291 (474)
Q Consensus 262 ~L~tl~~h~~~-------------------------------------v-~~V~F~~~~~~~ll~~~~------------ 291 (474)
.+-++...... + ..+++. +..+.+..+..
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCS
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCC
Confidence 99888632110 0 123433 34566666542
Q ss_pred C----CcEEEEECCCCceEEecc--ccCC-------ceEEEEEcCCCc---EEEEEc-CCcEEEEeC-CCcEEEEeccC-
Q 011970 292 N----ENLQILDVRNAELMEVSR--TEFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDH- 352 (474)
Q Consensus 292 D----~tIkIWDv~tg~~~~~l~--~h~~-------~v~sv~Fspdg~---llaS~s-D~tIklWd~-~G~ll~tl~gH- 352 (474)
| +.|..+|.++|+.+-... +|.. .+.-+...+||+ +++.++ ++.+.+.|. +|+++..++-.
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 2 369999999999875432 2321 222222335784 667777 999999998 59988765421
Q ss_pred -CCCcC------C-------------------C-------CeeEEEECCCCCEEEEEecCC-----------Cccc-ccc
Q 011970 353 -LLWHP------D-------------------C-------NTNNIYITSDQDLIISYCKAE-----------PEDQ-WME 387 (474)
Q Consensus 353 -~~~~~------~-------------------~-------~v~svafSpDg~~LaS~s~~~-----------~~~~-~~~ 387 (474)
..|.. . | +=..++|+|+..++...+..- .+.+ ..+
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 11100 0 0 002468899988887764310 0000 000
Q ss_pred --------------CCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 388 --------------GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 388 --------------s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
..++.|..||+.||+.+.+++... .+.+..+
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-----------------------------------~~~~~~~ 471 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-----------------------------------AAWGGTL 471 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-----------------------------------CCCSBCE
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-----------------------------------CccceeE
Confidence 246899999999999998875432 1122223
Q ss_pred cCCCCEEEEEcCCCcEEEcc
Q 011970 454 DEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 454 SpDg~~LaSgs~DgtVklWd 473 (474)
...+..++.|+.|+.|+.||
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EETTTEEEEECTTSEEEEEE
T ss_pred EECCCEEEEEcCCCeEEEEE
Confidence 34566778888999998887
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00027 Score=73.22 Aligned_cols=235 Identities=12% Similarity=0.115 Sum_probs=144.2
Q ss_pred EEEee---ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 93 EIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 93 ~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
.|++. +..|+.....+.|+.++.++++ +.++.. ....-+.|+|+|+|+.|..+...+... ...-++..+
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~------~~~v~~~~~ 212 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS-GLSKVRTICWTHEADSMIITNDQNNND------RPNNYILTR 212 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTT------SEEEEEEEG
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcc------cceEEEEeC
Confidence 44554 3556666555889999987555 445543 345579999999999666543211111 222344446
Q ss_pred cCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE--EEEcC-CcEEEEEEcCCce-EEEEec
Q 011970 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISD-KHVQEIKISPGIM-LLIFNR 245 (474)
Q Consensus 170 ~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l--~tl~~-~~V~~vafSpg~~-la~~s~ 245 (474)
.|.+.... .+. .+.+|..++++|.+|.++++...++.|..+|+.++... ..+.. .+-..|+|+|++. |..+.
T Consensus 213 ~g~~~~~~-~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d- 288 (430)
T 3tc9_A 213 ESGFKVIT-ELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV- 288 (430)
T ss_dssp GGTSCSEE-EEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE-
T ss_pred CCceeeee-eec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE-
Confidence 77653211 122 25678899998438998888878889999999877652 22322 3567899998554 66654
Q ss_pred CCCCccEEEEecC--CCeE--EEEEeecC---------------ccee-EEEEEec------CCCeEEEE-eCCCcEEEE
Q 011970 246 SSSHVPLKILSIE--DGTV--LKVFYHLL---------------HRNK-KVDFIEQ------FNEKLLVK-QENENLQIL 298 (474)
Q Consensus 246 ~s~D~tIkLWdi~--tG~~--L~tl~~h~---------------~~v~-~V~F~~~------~~~~ll~~-~~D~tIkIW 298 (474)
...+.|..++.. +|+. +.++.+.. ..-. .++..+. ..+.|.++ ..++.|+.+
T Consensus 289 -~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 289 -VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp -TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred -CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 335678887654 3443 33443320 0111 2332210 12456665 477899999
Q ss_pred ECCCCceEEeccc-----------------cCCceEEEEEcC-CCcEEEEEc-CCcEEEEeC
Q 011970 299 DVRNAELMEVSRT-----------------EFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 299 Dv~tg~~~~~l~~-----------------h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~ 341 (474)
| .+|+....... .+..|+.|++.| +|.++++-. ++.|+..+.
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 9 56765443211 245799999999 688888877 788887765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00038 Score=70.77 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=150.5
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccc
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 185 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~ 185 (474)
....|+..++..++....+.+ ......|+|.+.++.|.-+. ... +.|..+++..+.. . .+... .+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D--~~~-------~~I~r~~~~g~~~-~--~~~~~-~~ 158 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSD--VTL-------DRILRANLNGSNV-E--EVVST-GL 158 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTSCCE-E--EEECS-SC
T ss_pred cCccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEe--CCC-------CcEEEEecCCCCc-E--EEEeC-CC
Confidence 345677778775554444443 34578999998777665432 222 3555566443332 1 12222 35
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
..|..+++++.+|.+..+-...+.|.+.++........+.. ..-..|++.| ++.|..+... ....|...++ +|+.
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~I~r~~~-dG~~ 236 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEASSM-DGSG 236 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCEEEEEET-TSCS
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCEEEEEeC-CCCC
Confidence 56778999866788888888888999999864433222332 4678999997 6666655432 1256877886 4555
Q ss_pred EEEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 263 LKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 263 L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
...+. .....-..|+|. +++++|..+ ...+.|..+|+.......+.......+..+++ .++.++.+-. .+.|...
T Consensus 237 ~~~~~~~~~~~PnGlavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTID-YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CEEEECSSCSCEEEEEEE-GGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCeeeEEEe-CCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 44443 334456789987 456777776 57789999998765554455555668899999 7788888887 8899999
Q ss_pred eC-CCcEEEEeccC
Q 011970 340 NF-RGELVTSFEDH 352 (474)
Q Consensus 340 d~-~G~ll~tl~gH 352 (474)
|. +|+.++++...
T Consensus 315 ~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 315 NKFTGKNQEIIRNK 328 (386)
T ss_dssp ETTTCCSCEEEECS
T ss_pred ECCCCcceEEEccC
Confidence 94 78888777654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00041 Score=68.31 Aligned_cols=183 Identities=9% Similarity=0.016 Sum_probs=121.7
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC---CeEEEE-EeecCcceeEEEEEe
Q 011970 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKV-FYHLLHRNKKVDFIE 280 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t---G~~L~t-l~~h~~~v~~V~F~~ 280 (474)
...|+.-|+.+++....+. .....+++|++ ++.|..+. ...+.|..+++.+ |....+ +.........+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D--~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd- 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD- 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEEEECSSCSCCCEEEEE-
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEE--CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe-
Confidence 3568888998877655555 36788999996 67777664 3357899999865 233333 33223455778875
Q ss_pred cCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-C-CcEEEEeCCCcEEEEeccCCCCc
Q 011970 281 QFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWH 356 (474)
Q Consensus 281 ~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D-~tIklWd~~G~ll~tl~gH~~~~ 356 (474)
+.++.|... ..++.|.+.|+...............+..+++.| +|.++.+.. . +.|...+++|+..+.+-......
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~ 165 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 165 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCC
Confidence 346677665 5789999999876554444444556899999998 666777765 4 78988899888776664322221
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
-+.|+++|+++.|.-+.. ..+.|...|+. |.-.+++
T Consensus 166 ----P~gla~d~~~~~lY~~D~----------~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 166 ----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp ----EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred ----ceEEEEeccCCEEEEEEC----------CCCeEEEEecC-CCceEEE
Confidence 479999998777765432 26789999974 5544444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00049 Score=69.02 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=122.4
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
...|+..++.+......+. ......|+|.| ++.|..+. ...+.|..+++.++.....+.........+++. +.++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd-~~~g 128 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVSTGLESPGGLAVD-WVHD 128 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE-TTTT
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEe--ccCCceEEEecCCCCceEEEeCCCCCccEEEEe-cCCC
Confidence 3457778887655544444 35688999995 67776664 335689999987665444343333445677775 4466
Q ss_pred eEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-C-CcEEEEeCCCcEEEEeccCCCCcCCCC
Q 011970 285 KLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 285 ~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D-~tIklWd~~G~ll~tl~gH~~~~~~~~ 360 (474)
.|... ...+.|.+.|+...............+..+++.| +|.++.+-. + +.|...+++|...+.+-......
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---- 204 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW---- 204 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC----
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC----
Confidence 77665 5678999999876554444455667899999998 667777766 6 88999999887666664322211
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
-+.|+|+|+++.|.-+.. ..+.|...|+ .|.-..++
T Consensus 205 PnGla~d~~~~~lY~aD~----------~~~~I~~~~~-dG~~~~~~ 240 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDA----------KHHVIERANL-DGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEEE
T ss_pred cceEEEeCCCCEEEEEEC----------CCCEEEEEeC-CCCceEEE
Confidence 379999997776654432 3678999996 45444443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-06 Score=92.43 Aligned_cols=186 Identities=10% Similarity=-0.009 Sum_probs=107.4
Q ss_pred CceEEEEeCCCCeEEEEecC-----CCcEEEeecCCC-eEEE-EEcCCcEEEEEEcCCc-eEEEEecCCCC--ccEEEEe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNY-TMLY-SISDKHVQEIKISPGI-MLLIFNRSSSH--VPLKILS 256 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~tg-~~l~-tl~~~~V~~vafSpg~-~la~~s~~s~D--~tIkLWd 256 (474)
+....+||||||+.||.+.. ..+|+++|+++| +.+. .+. ....+++|||++ .|+........ ..|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 34578997469999997553 246999999999 6321 111 112468899854 55554322111 3588899
Q ss_pred cCCCeE--EEEEee-cCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCC--ce--EEeccccCCceEEEEEcCCCc
Q 011970 257 IEDGTV--LKVFYH-LLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 257 i~tG~~--L~tl~~-h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg--~~--~~~l~~h~~~v~sv~Fspdg~ 326 (474)
+.+++. ...+.. .......+.|+ |++.+|+..+ ....|.++|+.++ +. ..+..++....+++.|..+++
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred CCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 988752 233332 22345667776 7788888754 3456788899886 34 444444555667777777777
Q ss_pred EEEEEc-C--C--cEEEEeCC-CcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 327 LFLTFR-N--R--TVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 327 llaS~s-D--~--tIklWd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+++... + + .|-++|+. +...+. +-.|... ..+.++.+. ++.+++++..
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~---~~l~~~~~~-~~~lv~~~~~ 387 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED---VFMESIAVR-SNYLVVAGRR 387 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS---EEEEEEEEC-SSEEEEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC---cEEEEEEEE-CCEEEEEEEe
Confidence 777665 5 3 44445554 233233 3333321 124555554 3445555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00078 Score=66.32 Aligned_cols=205 Identities=8% Similarity=0.040 Sum_probs=134.8
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCC---CeEEE-EEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLY-SISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t---g~~l~-tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi 257 (474)
+..|..++|++.++++..+....+.|..+|+.+ +.... .+.. .....|++.+ ++.|..+. ...+.|.+.|.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d--~~~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEE--CCCCEEEEEeC
Confidence 556778999865678888888889999999876 23222 2332 4567899985 66666653 33578999997
Q ss_pred CCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCceEEe-ccccCCceEEEEEcCC-CcEEEEEc
Q 011970 258 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEV-SRTEFMTPSAFIFLYE-NQLFLTFR 332 (474)
Q Consensus 258 ~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D--~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspd-g~llaS~s 332 (474)
. |+..+++- .....-..+++. |.++.|..+..+ +.|...++. |...++ .......+..++++|+ ++++.+-+
T Consensus 107 ~-g~~~~~~~~~~~~~P~~iavd-p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 107 K-GVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp T-SSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred C-CCceEEEEECCCCCcceEEeC-CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 5 44444443 334556788876 556777776533 688888875 444433 3345678999999975 55666666
Q ss_pred -CCcEEEEeCCCcEEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 333 -NRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 333 -D~tIklWd~~G~ll~tl~gH--~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+.|...|++|.-.+++-.. ...+ -.++++. ++.+.++-. ..+.|...|..+|+.+.++..
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~-~~~ly~~d~-----------~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTDI-----------INEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSS----EEEEEEE-TTEEEEEET-----------TTTEEEEEETTTCCCCEEEEC
T ss_pred CCCeEEEEecCCCceEEEeecCCccCC----cEEEEEE-CCEEEEEEC-----------CCCeEEEEeCCCCcceEEEec
Confidence 88999999987655554321 1222 2578884 455555543 268899999889988887754
Q ss_pred C
Q 011970 410 T 410 (474)
Q Consensus 410 H 410 (474)
.
T Consensus 248 ~ 248 (316)
T 1ijq_A 248 N 248 (316)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00022 Score=77.04 Aligned_cols=221 Identities=10% Similarity=0.060 Sum_probs=134.4
Q ss_pred EEEEee------CCCeEEeeeccccceeeEeecCCCce----------------------------------------E-
Q 011970 100 IVFALA------HSGVCAAFSRETNRRICFLNVSPDEV----------------------------------------I- 132 (474)
Q Consensus 100 ~las~s------~dgtiklW~~~tg~~l~~l~g~~~~~----------------------------------------i- 132 (474)
+|+.++ .+|.+..+|..||+.+=..... +.. +
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w 248 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW 248 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCC
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCcccc
Confidence 666665 3899999999999987654321 000 0
Q ss_pred EEEEEeeCCCEEEEEEeec----------C-------CCccceeeeEEEEeEeccCCCCCccceeeec---c-------c
Q 011970 133 RSLFYNKNNDSLITVSVYA----------S-------DNFSSLKCRSTKIEYIRRGKPDSGFALFESE---S-------L 185 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~----------s-------~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~---~-------~ 185 (474)
.+.+|.|+..+|..++... . ++ +--..+.-+|+.+|+. +|... + .
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~---~~~~~v~AlD~~TG~~-----~W~~q~~~~d~wd~~~~ 320 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDS---LYTSGQVGVDPSSGEV-----KWFYQHTPNDAWDFSGN 320 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCC---TTCSEEEEECTTTCCE-----EEEEESSTTCCSCCCCC
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCC---cccceEEEEeCCCCCE-----EEEEeCCCCCcccccCC
Confidence 1467778877776554211 0 11 1113566678888986 34431 1 1
Q ss_pred cCceEEEEeCCCCe---EEEEecCCCcEEEeecCCCeEEEEEcCC----cEE----------------------------
Q 011970 186 KWPGFVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQ---------------------------- 230 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk---~LaS~s~D~tiKlWdl~tg~~l~tl~~~----~V~---------------------------- 230 (474)
..|-.+.....||+ +|+.++.++.+.++|.+||+++....-. +..
T Consensus 321 ~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 400 (582)
T 1flg_A 321 NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGK 400 (582)
T ss_dssp CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCC
T ss_pred CCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCC
Confidence 11222233214784 7888999999999999999998766421 111
Q ss_pred ---------------EEEEcC-CceEEEEec------------------------------CCCCccEEEEecCCCeEEE
Q 011970 231 ---------------EIKISP-GIMLLIFNR------------------------------SSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 231 ---------------~vafSp-g~~la~~s~------------------------------~s~D~tIkLWdi~tG~~L~ 264 (474)
.++|+| .+++.+... ...++.|.-||+.||+.+-
T Consensus 401 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W 480 (582)
T 1flg_A 401 AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVW 480 (582)
T ss_dssp CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEE
T ss_pred ceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEE
Confidence 235555 223322210 1235789999999999998
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCC-ceEEEEEcCCCcEEEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTF 331 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~-~v~sv~Fspdg~llaS~ 331 (474)
+...+.. +..-... ..++.+.+++.|+.++.+|.++|+.+-.++.... ....++|..||++++..
T Consensus 481 ~~~~~~~-~~~g~~~-tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 481 EHKEHLP-LWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEEESSC-CCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EecCCCC-CcccceE-eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence 8775422 2221111 2367888888999999999999998865443221 22236677788766554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=77.83 Aligned_cols=265 Identities=11% Similarity=0.099 Sum_probs=152.0
Q ss_pred cccCceEEEEeCC-CCeEEEEecCCCcEEEeecCCCeEEEEEcC-----CcEEEEEE-------cC-CceEEEEecCCC-
Q 011970 184 SLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI-------SP-GIMLLIFNRSSS- 248 (474)
Q Consensus 184 ~~~~~~~V~Fs~~-nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-----~~V~~vaf-------Sp-g~~la~~s~~s~- 248 (474)
.+..|..|+|+|. ++++.++....+.|++.|++++.....+.. +....|+| ++ |.+|.++.....
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4667889999841 466666655557799999988776544432 24899999 97 554666644321
Q ss_pred ---CccEEEEecCC-CeEE-----EEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECC-------CCce------
Q 011970 249 ---HVPLKILSIED-GTVL-----KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR-------NAEL------ 305 (474)
Q Consensus 249 ---D~tIkLWdi~t-G~~L-----~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~-------tg~~------ 305 (474)
...|.+.+... |+.. +++... .+-..+++. |+++.|.++ ..++.|..+|+. +++.
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavd-p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIH-PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEEC-TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEc-CCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 12355665433 3321 222211 123466654 556777765 578889999998 6654
Q ss_pred -----EEe-c-cccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCCc--EE---EEeccC---CCCcCC-------CCe
Q 011970 306 -----MEV-S-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE--LV---TSFEDH---LLWHPD-------CNT 361 (474)
Q Consensus 306 -----~~~-l-~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G~--ll---~tl~gH---~~~~~~-------~~v 361 (474)
.+. . .+...+++.++|+|+|+ ++++-+ ...|+.++.+|+ .+ .++.|. .++... ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 211 1 23345788999999999 567766 889999776442 22 445443 111000 001
Q ss_pred e-EEEEC-------CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccc
Q 011970 362 N-NIYIT-------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 433 (474)
Q Consensus 362 ~-svafS-------pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
. .++.. ++|.+.++=+. ...||..+ .+|+ +.++-|.... ...+.. ....
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~-----------N~rIr~i~-~~G~-v~TiaG~g~~--~~~~~~--------~~~G 431 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRL-----------NFCVRKVT-PEGI-VSTYAGRGAS--TSLADG--------NQWG 431 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGG-----------GTEEEEEC-TTCB-EEEEEESCTT--HHHHHS--------CSCC
T ss_pred eEEEEEccccccccCCCeEEEEECC-----------CCEEEEEe-CCCC-EEEEeccccc--ccccCc--------cccc
Confidence 2 35554 67788776443 68999999 6884 5677664310 000000 0000
Q ss_pred cccccccccccccCEEEEEEcCC-CCEEEEEcCCCcEEEcc
Q 011970 434 SSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 434 ~~~~~~~~~~~l~~V~slafSpD-g~~LaSgs~DgtVklWd 473 (474)
..+......-.|..-+.|+++|+ |..+++=.....||..+
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 00000001123457789999997 77666666777787654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-05 Score=80.81 Aligned_cols=159 Identities=11% Similarity=-0.005 Sum_probs=98.7
Q ss_pred EEEEeCCCCe---EEEEecCCCcEEEeecCCCeEEEEEcC-C-----cEEE-EEEcCCceEEEEecCC---CCccEEEEe
Q 011970 190 FVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQE-IKISPGIMLLIFNRSS---SHVPLKILS 256 (474)
Q Consensus 190 ~V~Fs~~nGk---~LaS~s~D~tiKlWdl~tg~~l~tl~~-~-----~V~~-vafSpg~~la~~s~~s---~D~tIkLWd 256 (474)
.++++|.+|+ .|..++.|+.+.-.|.+||+.+..... . .+.+ -.+. ++++++.+... .++.|.-+|
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEE
Confidence 3566422454 144567799999999999998876542 1 1211 1112 55655543211 267899999
Q ss_pred cCCCeEEEEEeecCcc-------------------------------------ee-EEEEEecCCCeEEEEeCC------
Q 011970 257 IEDGTVLKVFYHLLHR-------------------------------------NK-KVDFIEQFNEKLLVKQEN------ 292 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~-------------------------------------v~-~V~F~~~~~~~ll~~~~D------ 292 (474)
.+||+++-++...... ++ ..++. +..+.+..+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccC
Confidence 9999999887632110 11 12332 456677776543
Q ss_pred ----------CcEEEEECCCCceEEec--cccCC-------ceEEEEEc-CCC---cEEEEEc-CCcEEEEeC-CCcEEE
Q 011970 293 ----------ENLQILDVRNAELMEVS--RTEFM-------TPSAFIFL-YEN---QLFLTFR-NRTVAVWNF-RGELVT 347 (474)
Q Consensus 293 ----------~tIkIWDv~tg~~~~~l--~~h~~-------~v~sv~Fs-pdg---~llaS~s-D~tIklWd~-~G~ll~ 347 (474)
..|.-+|..||+.+-.. .+|.. .+.-+... .+| ++++.++ ++.+-+.|. +|+++.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 48999999999987543 23321 12222222 578 5777777 999999999 599987
Q ss_pred Eec
Q 011970 348 SFE 350 (474)
Q Consensus 348 tl~ 350 (474)
..+
T Consensus 348 ~~~ 350 (599)
T 1w6s_A 348 ANK 350 (599)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00094 Score=66.39 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=144.9
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE-EEEc--CCcEEEEEEcC-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKISP- 236 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l-~tl~--~~~V~~vafSp- 236 (474)
+.|+..++..+..... .+.. .+..+..|+|++.+|++..+-...+.|..+++.++... ..+. -.....+++.+
T Consensus 13 ~~I~~i~l~~~~~~~~-~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENAT-IVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCCE-EEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEEE-EEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4566666544432111 1222 24455689998667888888888999999998766321 1121 24566899986
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccC
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
++.|..+. .....|.+.++. |....++. .....-..+++. |.++.|..+. ....|...++.............
T Consensus 90 ~g~ly~~d--~~~~~I~~~~~d-G~~~~~l~~~~~~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l 165 (318)
T 3sov_A 90 GEKLYWTD--SETNRIEVSNLD-GSLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 165 (318)
T ss_dssp TTEEEEEE--TTTTEEEEEETT-SCSCEEEECSSCSSEEEEEEE-GGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCeEEEEE--CCCCEEEEEECC-CCcEEEEEeCCCCCccEEEEe-CCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence 66666653 335689999975 44444443 334455788876 4467777764 46788888876444333334456
Q ss_pred CceEEEEEcC-CCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 314 MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 314 ~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
..+..++|+| +++++.+-+ .+.|...|++|.-.+++-.....+ -..+++.. +.+..+-. ..+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~----P~glav~~-~~lywtd~-----------~~~ 229 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH----PFALTLFE-DILYWTDW-----------STH 229 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC----EEEEEEET-TEEEEEET-----------TTT
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC----ceEEEEeC-CEEEEEec-----------CCC
Confidence 7899999998 566667766 889999999876555443222223 25777753 34444432 268
Q ss_pred eEEEEeCCCCeEEEEecCC
Q 011970 392 SINVSSILTGKCLAKINAT 410 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH 410 (474)
.|...|..+|+.++++...
T Consensus 230 ~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 230 SILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEEEETTTCCSCEEEECC
T ss_pred eEEEEECCCCCceEEEeCC
Confidence 9999998899887777543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00074 Score=70.09 Aligned_cols=234 Identities=9% Similarity=0.054 Sum_probs=143.5
Q ss_pred EEEeec----cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 93 EIVAAR----DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 93 ~i~~s~----~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
.|++.. ..|..+...+.|+.++.++|+....+ + .......|+|+|+|+.+++ ...+..+ ....++..
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~-~~~~P~giavd~dG~lyVa-d~~~~~~------~~gv~~~~ 213 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-T-NIGQCADVNFTLNGDMVVV-DDQSSDT------NTGIYLFT 213 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-C-CCSCEEEEEECTTCCEEEE-ECCSCTT------SEEEEEEC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-c-CCCCccEEEECCCCCEEEE-cCCCCcc------cceEEEEE
Confidence 566652 45555544488999998777655443 3 3455899999999994443 2111111 12222333
Q ss_pred ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-c--C-CcEEEEEEcCC-ceEEEE
Q 011970 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--D-KHVQEIKISPG-IMLLIF 243 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-~--~-~~V~~vafSpg-~~la~~ 243 (474)
..+..... ..+. .+..|..+++++.+|.+.++...++.|..+|..+|+....+ . . ..-..|+|+|+ ..|.++
T Consensus 214 ~~~~~~~~-~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 214 RASGFTER-LSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp GGGTTCCE-EEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred CCCCeecc-cccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 44443211 1122 35677889998438988888778889999999888763332 1 1 23346999984 446666
Q ss_pred ecCCCCccEEEEecC--CCeEE--EEEeec---------------CcceeEEEEEe-------cCCCeEEEE-eCCCcEE
Q 011970 244 NRSSSHVPLKILSIE--DGTVL--KVFYHL---------------LHRNKKVDFIE-------QFNEKLLVK-QENENLQ 296 (474)
Q Consensus 244 s~~s~D~tIkLWdi~--tG~~L--~tl~~h---------------~~~v~~V~F~~-------~~~~~ll~~-~~D~tIk 296 (474)
. ...+.|..++.. +|+.. .++.+. ...-..++|.. ..++.|.++ ..++.|+
T Consensus 291 d--~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 291 Y--NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp E--TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred e--CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 4 335678887754 45321 233332 12235577731 234556665 5788999
Q ss_pred EEECCCCceEEecc-----------------ccCCceEEEEEc-CCCcEEEEEc-CCcEEEEeC
Q 011970 297 ILDVRNAELMEVSR-----------------TEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 297 IWDv~tg~~~~~l~-----------------~h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~ 341 (474)
.+|. +|+...... ..+..|..+++. ++|.++++-. ++.|+..++
T Consensus 369 ~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 369 VLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 9994 676544321 124579999999 8999999887 888887765
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.001 Score=71.02 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=145.9
Q ss_pred EEEEee----ccEEEEeeCCCeEEeeeccccceeeEeecC--CCceEEEEEE-------eeCCCEEEEEEeecCCCccce
Q 011970 92 IEIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFY-------NKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 92 ~~i~~s----~~~las~s~dgtiklW~~~tg~~l~~l~g~--~~~~i~sv~f-------spdg~~Lis~S~~~s~d~s~L 158 (474)
.-++|. +.+.++--..+.|++.|.++++....+..+ ..+..+.|+| +++|++|+.+...+.. . ..
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~-~-~~ 219 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK-G-DE 219 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT-G-GG
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC-c-cc
Confidence 345555 334444444577888888855554433322 1235899999 9999977765433211 0 00
Q ss_pred eeeEEEEeEecc-CCCCC-c-cceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-------CCeE--------
Q 011970 159 KCRSTKIEYIRR-GKPDS-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NYTM-------- 220 (474)
Q Consensus 159 k~~~~~iw~i~~-G~~~~-~-~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-------tg~~-------- 220 (474)
. +.+-+-+... |++.. . ..... ...+|..++++|.+|.++++...++.|..+|++ +++.
T Consensus 220 ~-~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 S-PSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp E-EEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred C-ceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 0 2232223222 45421 0 01222 256777899985478888888889999999998 6653
Q ss_pred ------EEEEcC-CcEEEEEEcCCc-eEEEEecCCCCccEEEEe--cCCCeEE--EEEeecC---------------cce
Q 011970 221 ------LYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILS--IEDGTVL--KVFYHLL---------------HRN 273 (474)
Q Consensus 221 ------l~tl~~-~~V~~vafSpg~-~la~~s~~s~D~tIkLWd--i~tG~~L--~tl~~h~---------------~~v 273 (474)
+.++.. .+-..|+|+|++ .|.++. ...+.|+.++ -.+++.. .++.+.. ..-
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 334443 345789999854 455553 3356787754 4555431 3454420 011
Q ss_pred eEEEEEe-c-----CCCeEEEE-eCCCcEEEEECCCCceEEecc-------------c----------cCCceEEEEEcC
Q 011970 274 KKVDFIE-Q-----FNEKLLVK-QENENLQILDVRNAELMEVSR-------------T----------EFMTPSAFIFLY 323 (474)
Q Consensus 274 ~~V~F~~-~-----~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~-------------~----------h~~~v~sv~Fsp 323 (474)
....|.. + .++.|.++ ..++.||.+| .+|....... | .+..|..|++.+
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 2133332 1 24456665 5889999999 5775443211 1 245799999999
Q ss_pred C-CcEEEEEc-CCcEEEEeCCCc-EEEEec
Q 011970 324 E-NQLFLTFR-NRTVAVWNFRGE-LVTSFE 350 (474)
Q Consensus 324 d-g~llaS~s-D~tIklWd~~G~-ll~tl~ 350 (474)
+ |.++++-+ +..|+..+++++ +++...
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC------
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 7 99999888 889999998754 555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.002 Score=63.67 Aligned_cols=265 Identities=12% Similarity=0.063 Sum_probs=145.1
Q ss_pred cccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeec---CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g---~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
...+.+|.|. +..+| ....|.+ +...+-|+--..+.. .+...+.+|+|+| +..++ ++.. . .
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~---g-------~ 100 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEP---P-------I 100 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEET---T-------E
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECC---C-------e
Confidence 4568899986 45555 5567876 333444543333321 1244799999986 44343 3321 1 1
Q ss_pred EEEeEecc-CCCCCccceeeec-----cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEcCCcEEEEE
Q 011970 163 TKIEYIRR-GKPDSGFALFESE-----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKHVQEIK 233 (474)
Q Consensus 163 ~~iw~i~~-G~~~~~~~lf~~~-----~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~~~~V~~va 233 (474)
|+.-.+ |+- |+.. .-..+..+.+. +++++++.+.....+|-+| .|+ .+.......+.+++
T Consensus 101 --i~~S~DgG~t------W~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 101 --MLHTTDGGQS------WSQIPLDPKLPGSPRLIKAL-GNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp --EEEESSTTSS------CEECCCCTTCSSCEEEEEEE-ETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEE
T ss_pred --EEEECCCCCC------ceECccccCCCCCeEEEEEE-CCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEE
Confidence 111122 332 2210 01123467776 4688888776444456555 343 22221235689999
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-c
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-T 311 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~ 311 (474)
++|++.+++.+.. ..-.+-+|- .|+--+.+. .....+..+.+. + ++.+.+.+.++.+.+++...|+.-+... .
T Consensus 170 ~~~~~~~~~~g~~--G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~-~-~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~ 244 (327)
T 2xbg_A 170 RSPSGEYVAVSSR--GSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFT-P-DGRLWMIVNGGKIAFSDPDNSENWGELLSP 244 (327)
T ss_dssp ECTTSCEEEEETT--SSEEEEECT-TCSSCEEEECCSSSCEEEEEEC-T-TSCEEEEETTTEEEEEETTEEEEECCCBCT
T ss_pred EcCCCcEEEEECC--CcEEEEeCC-CCCceeECCCCCCCccceeEEC-C-CCCEEEEeCCceEEEecCCCCCeeEeccCC
Confidence 9975555544322 223444441 122222221 233456778875 3 3566777788888887533354333221 1
Q ss_pred ---cCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 312 ---EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 312 ---h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
+...+.+++|.|++++++.+.+++| ++..+ |+--+.+...... + ..+..|.|.+++++++.|.
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~-~-~~~~~v~~~~~~~~~~~G~---------- 311 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKV-P-SNFYKILFFSPDQGFILGQ---------- 311 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTS-S-SCCCEEEEEETTEEEEECS----------
T ss_pred cccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCC-C-CCeEEEEEECCCceEEEcC----------
Confidence 2345789999999999998888888 56665 7655555422110 0 1257898987777776542
Q ss_pred CCCCeEEEEe
Q 011970 388 GSAGSINVSS 397 (474)
Q Consensus 388 s~DgtIklWd 397 (474)
+|+|.-++
T Consensus 312 --~G~i~~~~ 319 (327)
T 2xbg_A 312 --KGILLRYV 319 (327)
T ss_dssp --TTEEEEEC
T ss_pred --CceEEEEc
Confidence 78775554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0057 Score=62.53 Aligned_cols=232 Identities=11% Similarity=0.109 Sum_probs=149.2
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCccceeeecc
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESES 184 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~~~lf~~~~ 184 (474)
....|+.-++.+++....+.+ ...+..|+|.+.++.|--+. ... +.|...++..+.. .....+... .
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d~~~~~lywsD--~~~-------~~I~~~~~~g~~~~~~~~~~~~~-~ 157 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSD--LSQ-------RMICSTQLDRAHGVSSYDTVISR-D 157 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECS--CSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEEC------CCCEEEECS-S
T ss_pred ccceeEEEccCCcceeEeccc--cCcceEEeeeeccCceEEEe--cCC-------CeEEEEEcccCCCCCcceEEEeC-C
Confidence 346777777775544444432 35588999999877765532 222 3455555432110 000122332 3
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+..|..++++..+|.+..+-+..+.|.+.|++.......+. ......|++.| ++.|..+.. +....|...++ +|+
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~-~~~~~I~~~~~-dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGL-NGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC-SSSCCEEEEET-TSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC-CCCCEEEEEeC-CCC
Confidence 56788999986588888888888999999987544333333 24688999998 666666543 22356888887 455
Q ss_pred EEEEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 262 VLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 262 ~L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
...++. .....-..+++. +++++|..+ ...+.|...|+.......+.. +....+.++++ .++.++.+-. .+.|
T Consensus 236 ~~~~~~~~~l~~P~glavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSE
T ss_pred ccEEEEECCCCceEEEEEE-eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeE
Confidence 544443 334566888987 557777776 578899999987655444333 23457788887 6678888887 8899
Q ss_pred EEEeC-CCcEEEEeccCC
Q 011970 337 AVWNF-RGELVTSFEDHL 353 (474)
Q Consensus 337 klWd~-~G~ll~tl~gH~ 353 (474)
...|. +|+.+.++....
T Consensus 314 ~~~~~~~G~~~~~i~~~~ 331 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENL 331 (400)
T ss_dssp EEEESSSCCCCEEEECSC
T ss_pred EEEEcCCCCceEEEecCC
Confidence 99995 698877776443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0037 Score=63.93 Aligned_cols=207 Identities=8% Similarity=0.038 Sum_probs=136.8
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg----~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi 257 (474)
+..+..|+|++.++++..+....+.|+.+++.+. .....+. -.....||+.+ ++.|..+. ...+.|.+.++
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d--~~~~~I~~~~~ 188 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADT 188 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEECT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE--CCCCeEEEEeC
Confidence 5667789999667888888888899999998652 2222232 24678999996 77776664 33568999998
Q ss_pred CCCeEEEEEeecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-C
Q 011970 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N 333 (474)
Q Consensus 258 ~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D 333 (474)
..+.....+......-..|++. |.++.|..+. ....|...++..............++..++|+|+ ++++.+-+ .
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavd-p~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEE-TTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCcceEEEe-cccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 6544433333334556788876 4567777764 3478988898765544444555678999999975 55556656 8
Q ss_pred CcEEEEeCCCcEEEEec-cC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 334 RTVAVWNFRGELVTSFE-DH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 334 ~tIklWd~~G~ll~tl~-gH-~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
++|...|++|.-.+++- ++ ...+ -.+|++ ..+.+..+-.. .+.|...|..+|+-+.++...
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~l~~----P~gl~v-~~~~lywtd~~-----------~~~V~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 268 HSISSIDVNGGNRKTILEDEKRLAH----PFSLAV-FEDKVFWTDII-----------NEAIFSANRLTGSDVNLLAEN 330 (400)
T ss_dssp TEEEEEETTSCCCEEEEECSSTTSS----EEEEEE-ETTEEEEEESS-----------SCSEEEEESSSCCCCEEEECS
T ss_pred CEEEEEeCCCCccEEEEeCCCCCCC----CEEEEE-eCCEEEEecCC-----------CCeEEEEEcCCCCceEEEecC
Confidence 89999999876544443 21 1222 246776 23344444322 678999998899888887643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0059 Score=60.28 Aligned_cols=272 Identities=10% Similarity=0.047 Sum_probs=143.9
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ 208 (474)
...+++|+|.+++..+|. + ... .+ +.....|+--....+-.......+..|+|+ + +..++.+ .++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G---~~g-------~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~~~~~g-~~g 99 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-G---VNA-------TL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NEGWIVG-EPP 99 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-E---TTT-------EE-EEESSTTSSCEECCCCCSCCCCEEEEEEEE-T-TEEEEEE-ETT
T ss_pred CCcEEEEEECCCCcEEEE-c---CCC-------eE-EEeCCCCCCCeECCCCCCCCCccEEEEEec-C-CeEEEEE-CCC
Confidence 456999999888887763 3 222 21 122122332110000000011234578997 4 5666654 455
Q ss_pred cEEEeecCCCeEEEEEc-----CCcEEEEEEcC-CceEEEEecCCCCccE-EEEecCCCeEEEEE-eecCcceeEEEEEe
Q 011970 209 IYKVFDLKNYTMLYSIS-----DKHVQEIKISP-GIMLLIFNRSSSHVPL-KILSIEDGTVLKVF-YHLLHRNKKVDFIE 280 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~-----~~~V~~vafSp-g~~la~~s~~s~D~tI-kLWdi~tG~~L~tl-~~h~~~v~~V~F~~ 280 (474)
.|.. ....|+--..+. ...+..|++.+ +..++.. . ++.| +-+| .|+--... ..+...+..++|.+
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-N---VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-T---TCCEEEESS--TTSSEEEEECSCCCCEEEEEECT
T ss_pred eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-C---CccEEEEcC--CCCCCEEeecCCCcceEEEEEcC
Confidence 4433 112343211111 13577888874 5444443 2 2333 3333 34332222 23445678888864
Q ss_pred cCCCeEEEEeCC-CcEEEEEC--CCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccC-CCC
Q 011970 281 QFNEKLLVKQEN-ENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH-LLW 355 (474)
Q Consensus 281 ~~~~~ll~~~~D-~tIkIWDv--~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH-~~~ 355 (474)
++ .+++.+.+ ...+-+|- .+-+.+. ......+.++++.|++++++.+.++.+.+++.+ |+--+.+... ...
T Consensus 173 -~~-~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~ 248 (327)
T 2xbg_A 173 -SG-EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRN 248 (327)
T ss_dssp -TS-CEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSC
T ss_pred -CC-cEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccC
Confidence 34 45554444 44445552 2223332 234567889999999999988778988888654 6543333211 000
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
. -.+..|++.|+++++|.+. ++.| ++....|+--..+......|
T Consensus 249 ~--~~~~~v~~~~~~~~~~~g~------------~g~i-~~S~DgG~tW~~~~~~~~~~--------------------- 292 (327)
T 2xbg_A 249 S--VGFLDLAYRTPNEVWLAGG------------AGAL-LCSQDGGQTWQQDVDVKKVP--------------------- 292 (327)
T ss_dssp C--SCEEEEEESSSSCEEEEES------------TTCE-EEESSTTSSCEECGGGTTSS---------------------
T ss_pred C--cceEEEEecCCCEEEEEeC------------CCeE-EEeCCCCcccEEcCccCCCC---------------------
Confidence 0 1267899999999998764 6777 44444565544443221000
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..+++|.|.++++ ++.++.+|+|.-++
T Consensus 293 ----------~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 293 ----------SNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ----------SCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ----------CCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 1567888986654 66667789886553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00058 Score=68.68 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=83.9
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE--EEEEc-----CCcEEEEEEcCC----ceEEEEecCCCC---c
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKISPG----IMLLIFNRSSSH---V 250 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~--l~tl~-----~~~V~~vafSpg----~~la~~s~~s~D---~ 250 (474)
+..|..++|+ |||+++++- .++.|++++ +|+. +..+. ......|+|+|+ +.|.++.....+ .
T Consensus 30 l~~P~~ia~~-pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFL-PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEEC-TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEc-CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 6678899998 799988765 468999998 5652 22332 246889999986 566555332111 4
Q ss_pred cEEEEecCCCe------EEEEEe---ecCcceeEEEEEecCCCeEEEE-eCC-------------CcEEEEECCCC----
Q 011970 251 PLKILSIEDGT------VLKVFY---HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNA---- 303 (474)
Q Consensus 251 tIkLWdi~tG~------~L~tl~---~h~~~v~~V~F~~~~~~~ll~~-~~D-------------~tIkIWDv~tg---- 303 (474)
.|..++..+++ ++..+. +..|.-..++|. |+| +|.++ +.. +.|.-+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 57777776542 222243 122344688887 455 55554 321 34544554420
Q ss_pred --------ceEEe-ccccCCceEEEEEcC-CCcEEEEEc
Q 011970 304 --------ELMEV-SRTEFMTPSAFIFLY-ENQLFLTFR 332 (474)
Q Consensus 304 --------~~~~~-l~~h~~~v~sv~Fsp-dg~llaS~s 332 (474)
...++ ..+| ..+..++|.| +|+++++-.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 11111 1222 3477899999 889888865
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0097 Score=59.02 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=145.2
Q ss_pred CCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecc
Q 011970 107 SGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (474)
Q Consensus 107 dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~ 184 (474)
...|+..++.++. ....+.+ -.....|+|.+.++.|--+. -.. +.|..+++..+.... .+... .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~--~~~~~~ld~d~~~~~lyw~D--~~~-------~~I~r~~~~g~~~~~--~~~~~-~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG--LEDAAAVDFVFSHGLIYWSD--VSE-------EAIKRTEFNKTESVQ--NVVVS-G 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE--EEEEEEEEEEGGGTEEEEEE--TTT-------TEEEEEETTSSSCCC--EEEEE-C
T ss_pred cCeEEEEECCCCceEEEEEecC--CCccEEEEEEeCCCEEEEEE--CCC-------CcEEEEEccCCCceE--EEEcC-C
Confidence 4577788877553 1112222 23467899999776665432 222 355555644332111 23332 3
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+..|..+++++.+|.+..+-+..+.|.+.++.. ....++. ...-..|++.| ++.|..+.. +....|...++ +|
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~-dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGM-DG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEET-TS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEc-CC
Confidence 567889999866888888888889999999864 3333332 24678999997 566655532 22356777776 45
Q ss_pred eEEEEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 261 ~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
+...++- .....-..++|. +++++|..+ ...+.|...|+..........+....+..+++. ++.++.+-. .+.|.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSIL 232 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCCccEEEEe-ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEE
Confidence 5554443 223455788887 557777776 578899999987544444444456778888884 567777876 88999
Q ss_pred EEeC-CCcEEEEeccC
Q 011970 338 VWNF-RGELVTSFEDH 352 (474)
Q Consensus 338 lWd~-~G~ll~tl~gH 352 (474)
..|. +|+.++++...
T Consensus 233 ~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 233 ACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEETTTCCSCEEEECC
T ss_pred EEECCCCCceEEEeCC
Confidence 9998 68877766543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.043 Score=59.57 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=164.7
Q ss_pred cEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 90 KVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 90 ~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
....|++. +.+.++-+..+.|...+.+ |....+|-...-+.-+.|++.|.+..|--+. .+ .. . +|+
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD-~g-~~------~--~I~ 153 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTD-WG-EV------P--KIE 153 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCCEEEETTTTEEEEEE-CS-SS------C--EEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCCCCCceEEEecCCCeEEEec-cC-CC------C--EEE
Confidence 45677776 5677777788999999977 6555455422334468999999765554322 12 11 1 233
Q ss_pred Ee-ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-c--CCcEEEEEEcCCceEEE
Q 011970 167 YI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKHVQEIKISPGIMLLI 242 (474)
Q Consensus 167 ~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-~--~~~V~~vafSpg~~la~ 242 (474)
.. ..|.... .+.. ..+.||..+++++.++++..+-+..+.|...|+.... ..++ . ...-.+|++..+ .|..
T Consensus 154 r~~~dG~~~~--~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~ly~ 228 (619)
T 3s94_A 154 RAGMDGSSRF--IIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-ILYW 228 (619)
T ss_dssp EEETTSCSCE--EEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC---------CCCEEESSS-EEEE
T ss_pred EEECCCCceE--EEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-EEEE
Confidence 22 3454321 2332 2478999999996678888887888889999986433 2222 2 122346777666 4444
Q ss_pred EecCCCCccEEEEecCCCeEEEEEeecCcceeEEE-------------------------EEec----------CC----
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD-------------------------FIEQ----------FN---- 283 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~-------------------------F~~~----------~~---- 283 (474)
+. .....|..-|..+|+.+..+......-..|. +..| .|
T Consensus 229 td--~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 229 TD--WSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EC--TTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred ec--CCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 43 3356788888888876555432111111121 1111 11
Q ss_pred ----------C-eEEEEeCCCcEEEEECCCCceE--EeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCCCcEEEE
Q 011970 284 ----------E-KLLVKQENENLQILDVRNAELM--EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTS 348 (474)
Q Consensus 284 ----------~-~ll~~~~D~tIkIWDv~tg~~~--~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~G~ll~t 348 (474)
+ .|+.+ ..+.|+..++.+.+.. .........+.+++|.+ ++.++.+-. .+.|..++.+|.-..+
T Consensus 307 ~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~ 385 (619)
T 3s94_A 307 ENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF 385 (619)
T ss_dssp TTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE
Confidence 1 22333 2346676777765432 12223345688999987 678888876 8899999998754333
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+-...... ...+|+.+.+..|.-+. +..++|.+-++ .|+...+|-
T Consensus 386 v~~~~~~~----p~GlAvD~~~~~lY~tD----------~~~~~I~v~~~-~G~~~~~l~ 430 (619)
T 3s94_A 386 VVTAQIAH----PDGIAVDWVARNLYWTD----------TGTDRIEVTRL-NGTMRKILI 430 (619)
T ss_dssp EECSSCSC----CCEEEEETTTTEEEEEE----------TTTTEEEEEET-TSCSCEEEE
T ss_pred EEECCCCC----cCceEEecccCcEEEEe----------CCCCcEEEEeC-CCCeEEEEE
Confidence 33222111 46899987555444332 13688999886 466555554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0078 Score=60.60 Aligned_cols=142 Identities=8% Similarity=0.085 Sum_probs=83.4
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEc-----CCcEEEEEEcCC----ceEEEEecC-CCC----
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----DKHVQEIKISPG----IMLLIFNRS-SSH---- 249 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~-----~~~V~~vafSpg----~~la~~s~~-s~D---- 249 (474)
+..|..++|+ |||+++++-. ++.|+++| .+|+ .+..+. ......|+|+|+ +.|.++... ..+
T Consensus 28 l~~P~~ia~~-pdG~l~V~e~-~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPL-GGGRYLVTER-PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEE-ETTEEEEEET-TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEc-CCCeEEEEeC-CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 6778899998 7999887654 58899888 5676 333322 246889999985 666555321 112
Q ss_pred ccEEEEecCCC-------eE-EEEEe-ecCcceeEEEEEecCCCeEEEE-eCC-------------CcEEEEECCCCc--
Q 011970 250 VPLKILSIEDG-------TV-LKVFY-HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNAE-- 304 (474)
Q Consensus 250 ~tIkLWdi~tG-------~~-L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D-------------~tIkIWDv~tg~-- 304 (474)
..|..++...+ +. +..+. +..|.-..++|. |+| +|.++ +.. +.|.-.|....-
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 45666776554 12 22243 222445678887 455 55554 321 344444543210
Q ss_pred -----eEEec-cccCCceEEEEEcC-CCcEEEEEc
Q 011970 305 -----LMEVS-RTEFMTPSAFIFLY-ENQLFLTFR 332 (474)
Q Consensus 305 -----~~~~l-~~h~~~v~sv~Fsp-dg~llaS~s 332 (474)
-.+++ .+| ..+..++|.| +|+++++-.
T Consensus 183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 183 DNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence 01121 233 3577899999 899988865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0091 Score=66.99 Aligned_cols=208 Identities=8% Similarity=0.045 Sum_probs=137.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg----~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi 257 (474)
+..+..|+|++.++++..+....+.|+.+++... .....+. -.....||+.+ ++.|..+. ...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD--~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe--cCCCeEEEEeC
Confidence 5677789999668888888888899999998752 2222232 24577899996 66666664 34578999998
Q ss_pred CCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-
Q 011970 258 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR- 332 (474)
Q Consensus 258 ~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s- 332 (474)
. |+..+++. .....-..|++. |.++.|..+. ....|...++.......+......++..|++.| +++++.+-.
T Consensus 501 d-G~~~~~l~~~~l~~P~gIaVD-p~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 501 K-GVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp T-SSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred C-CCeEEEEEeCCCCCcceEEEe-cCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 5 55555554 344556888886 4567777764 337899999876555445555667899999995 566666666
Q ss_pred CCcEEEEeCCCcEEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 333 NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 333 D~tIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
...|...|++|.-++++ .++..+. .-.+|++ +++.|.-... ..++|..-|..+|+-+.++...-
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav--~~~~lYwtD~----------~~~~I~~~dk~tG~~~~~l~~~l 643 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAV--FEDKVFWTDI----------INEAIFSANRLTGSDVNLLAENL 643 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEE--ETTEEEEEET----------TTTEEEEEETTTCCCCEEEECSC
T ss_pred CCcEEEEecCCCceEEEecCCCccC---CCCEEEE--eCCEEEEEEC----------CCCEEEEEeCCCCcceEEeecCC
Confidence 78999999987655444 3322221 1245665 3444443321 26888888888998888885443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0034 Score=64.24 Aligned_cols=192 Identities=13% Similarity=0.203 Sum_probs=123.6
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCce-------EEEEecCCC--CccEEEEec--CCCeEEEEE
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIM-------LLIFNRSSS--HVPLKILSI--EDGTVLKVF 266 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~-------la~~s~~s~--D~tIkLWdi--~tG~~L~tl 266 (474)
..+|++. .++-+.|+|+ +|+.+..+....+..|..-|+-. ||..+ +.. +.+|.++++ .+++ |+.+
T Consensus 41 s~ii~t~-k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as-~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTN-KKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAAS-NRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEE-TTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEE-ECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEc-CCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEe-CCCCCCCeEEEEEECCCCCc-eeec
Confidence 4455554 4567999999 99999999877777777776432 33332 344 678999966 5665 5555
Q ss_pred ee-------cCcceeEEEE--EecCCC-eEEEEeCCCcEEEEEC-------CCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 267 YH-------LLHRNKKVDF--IEQFNE-KLLVKQENENLQILDV-------RNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 267 ~~-------h~~~v~~V~F--~~~~~~-~ll~~~~D~tIkIWDv-------~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
.. -......+++ .+..+. ++.+...++.+..|++ .++++++.+.-. ..+..++..++...|.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence 22 1144566776 332343 4666788899999988 234556665433 3678888887666665
Q ss_pred EEc-CCcEEEEeCC------CcEEEEec-cCCCCcCCCCeeEEEE--CCCCC-EEEEEecCCCccccccCCCCeEEEEeC
Q 011970 330 TFR-NRTVAVWNFR------GELVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 330 S~s-D~tIklWd~~------G~ll~tl~-gH~~~~~~~~v~svaf--SpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-+- |.-|-.++.+ ++++..+. +|... .+..+++ .+||+ ||+..|. .+.+.-++|.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~a----DvEGLai~~~~~g~gyLivSsQ----------G~~s~~Vydr 261 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTR----DIEGLTIYYAADGKGYLMASSQ----------GNSSYAIYDR 261 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCS----CEEEEEEEECGGGCEEEEEEEG----------GGTEEEEEES
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCcccc----CcceEEEEecCCCCEEEEEEcC----------CCCEEEEEEC
Confidence 555 6544344433 34666553 33321 1577777 77777 6666664 2789999999
Q ss_pred C-CCeEEEEec
Q 011970 399 L-TGKCLAKIN 408 (474)
Q Consensus 399 ~-tG~cl~tl~ 408 (474)
. +.+.+..|.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 6 788888884
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.029 Score=62.86 Aligned_cols=230 Identities=11% Similarity=0.104 Sum_probs=145.0
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-Cccceeeecc
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-SGFALFESES 184 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~-~~~~lf~~~~ 184 (474)
....|+..++..++....+.+ ...+..|+|.+.+..|.-+. ... +.|...++...... ....+... .
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD--~~~-------~~I~~~~l~g~~~~~~~~~vi~~-~ 469 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSD--LSQ-------RMICSTQLDRAHGVSSYDTVISR-D 469 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEE--TTT-------TEEEEEEC--------CEEEECS-S
T ss_pred cccceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEee--ccc-------eeEEEEeccCCCCCcceeEEEec-C
Confidence 345567777765544433332 34578999999766665432 222 34555554322110 01123332 4
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+..|..|+++..++++..+-...+.|.+.++.. +...++- ......||+.| ++.|..+.. +....|...++ +|
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-g~~~~I~~~~~-dG 546 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGL-NG 546 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEET-TS
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecC-CCCCeEEEEec-CC
Confidence 677889999866668888888899999999864 4344432 24688999997 566666543 22256888887 56
Q ss_pred eEEEEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccc--cCCceEEEEEcCCCcEEEEEc-CCc
Q 011970 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRT 335 (474)
Q Consensus 261 ~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~--h~~~v~sv~Fspdg~llaS~s-D~t 335 (474)
...+++. ....+-..|++. +.+++|..+ .....|...|+.......+..+ ....+.+|++ .+++++.+-. .++
T Consensus 547 ~~~~~lv~~~l~~P~GLavD-~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA 624 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCceEEEEe-cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCE
Confidence 6555554 334566788876 456777776 5678999999876555444433 3456778877 4557888887 888
Q ss_pred EEEEeC-CCcEEEEeccC
Q 011970 336 VAVWNF-RGELVTSFEDH 352 (474)
Q Consensus 336 IklWd~-~G~ll~tl~gH 352 (474)
|..-|. +|+-+.++...
T Consensus 625 I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp EEEEETTTCCCCEEEECS
T ss_pred EEEEeCCCCcceEEeecC
Confidence 988886 68776666543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=80.75 Aligned_cols=205 Identities=8% Similarity=0.067 Sum_probs=129.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCC----CeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t----g~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi 257 (474)
+..|..|+|++.++.+..+-...+.|+.+++.+ ......+.. .....||+.+ ++.|..+ +...+.|.+.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~t--D~~~~~I~v~d~ 482 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT--DSVLGTVSVADT 482 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEEC--CTTTSCEEEEBS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEE--eccCCeEEEEec
Confidence 445668999855677777777788999999875 122222221 2356788884 6666554 234578999997
Q ss_pred CCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-
Q 011970 258 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR- 332 (474)
Q Consensus 258 ~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s- 332 (474)
.. ..+.++. .....-..|++. |.++.|..+. ..+.|...++.......+.......+..++|+|+ ++++++-+
T Consensus 483 dg-~~~~~l~~~~~~~P~giavD-p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 483 KG-VKRKTLFREQGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp SS-CCEEEECCCSSCCCCCEECC-SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred CC-CceEEEEeCCCCCcceEEEc-cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence 64 4444443 223444667765 4466666654 2378888887644333333445568899999986 66777766
Q ss_pred CCcEEEEeCCCcEEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 333 NRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 333 D~tIklWd~~G~ll~tl~gH--~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.++|...|++|.-.+++... ...+| .+|++..+ .++++.. ..+.|...|..+|+.+++|..
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P----~glavd~~-~lywtd~-----------~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFED-KVFWTDI-----------INEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSC----CCCEEETT-EEEEECS-----------TTTCEEEEETTTEEEEECCCT
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCc----eEeEEECC-EEEEEeC-----------CCCeEEEEEccCCCceEEeec
Confidence 88999999987654444321 11222 35666544 4444432 268899999889999988854
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0077 Score=65.50 Aligned_cols=206 Identities=15% Similarity=0.154 Sum_probs=134.4
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+..|..|+|++.+|.+..+-...+.|+.+++..... ...+.. .....+|+.+ ++.|..+. ...+.|.+-++. |
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d--~~~~~I~v~~~d-G 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLD-G 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETT-S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEe--CCCCEEEEEECC-C
Confidence 556778999976888888877888999999875532 233332 5788999997 77777664 446789999975 5
Q ss_pred eEEEEEe-ecCcceeEEEEEecCCCeEEEEeC--CCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-CCc
Q 011970 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 335 (474)
Q Consensus 261 ~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~--D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D~t 335 (474)
+..+++. .....-+.|++. |.+++|..+.. ...|..-++..............++..+++.|+ ++++.+-. .+.
T Consensus 116 ~~~~~l~~~~l~~P~~Iavd-p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~ 194 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCCceEEEe-cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence 5554554 444556788886 45677777653 456666676644444444445678999999975 66666666 889
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|...|++|.-.+.+......+| .+|++.+| .+..+-. ..++|..-|..+|+-+..+...
T Consensus 195 I~~~~~dG~~~~~~~~~~~~~P----~gi~~~~~-~ly~td~-----------~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 195 IHKSNLDGTNRQAVVKGSLPHP----FALTLFED-ILYWTDW-----------STHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp EEEESSSCCEEC---------C----CCEEESSS-EEEEECT-----------TTCSEEEEESSSCCCCEECCSC
T ss_pred EEEecCCCCccEEEEeCCCCCc----eEEEEeCC-EEEEecC-----------CCCEEEEEECCCCcccEEEecC
Confidence 9999998765554432122332 46788666 4444422 2688999999899887777554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0076 Score=60.41 Aligned_cols=219 Identities=10% Similarity=0.109 Sum_probs=117.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC--CccceeeeccccCceEEEEeCCC----CeEEEEec
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD--SGFALFESESLKWPGFVEFDDVN----GKVLTYSA 205 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~--~~~~lf~~~~~~~~~~V~Fs~~n----Gk~LaS~s 205 (474)
-+.++|.|||..+++ . .. ..|.+.+ .|+.. ...+++.. ....+..|+|+ || |.+.++-+
T Consensus 33 P~~ia~~pdG~l~V~-e---~~-------g~I~~i~--~g~~~~~~~~~v~~~-g~~~p~gia~~-pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-E---RP-------GRIRLFR--EGRLSTYAELSVYHR-GESGLLGLALH-PRFPQEPYVYAYRT 97 (352)
T ss_dssp EEEEEECTTSCEEEE-E---TT-------TEEEEEE--TTEEEEEEECCCCCS-TTCSEEEEEEC-TTTTTSCEEEEEEE
T ss_pred ceEEEEcCCCeEEEE-e---CC-------CeEEEEE--CCCccEeecceEeec-CCCCceeEEEC-CCCCCCCEEEEEEe
Confidence 589999999997665 1 11 2344333 45421 11112221 24467789998 55 77666655
Q ss_pred CC-----CcEEEeecCCCe-----EEE-EEc--C---CcEEEEEEcCCceEEEEecCCCC-----------ccEEEEecC
Q 011970 206 QD-----SIYKVFDLKNYT-----MLY-SIS--D---KHVQEIKISPGIMLLIFNRSSSH-----------VPLKILSIE 258 (474)
Q Consensus 206 ~D-----~tiKlWdl~tg~-----~l~-tl~--~---~~V~~vafSpg~~la~~s~~s~D-----------~tIkLWdi~ 258 (474)
.+ ..|..+++.+++ .+. .+. . +.-..++|.|++.|.++.....+ +.|.-.+.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~- 176 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP- 176 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT-
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC-
Confidence 43 567778877542 222 243 1 34568999997777776422211 23333343
Q ss_pred CCe-------------EEEEEe-ecCcceeEEEEEecCCCeEEEEe--CCC-------cEEEEECCCCc-----------
Q 011970 259 DGT-------------VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENE-------NLQILDVRNAE----------- 304 (474)
Q Consensus 259 tG~-------------~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~--~D~-------tIkIWDv~tg~----------- 304 (474)
+|+ ....+. +| ..-+.++|.+ +++.|.++. .+. .|.+. ..|.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~-~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHP-KTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRG 252 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECT-TTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEEC-CCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCC
Confidence 231 111121 22 2346788864 344555542 232 23332 2222
Q ss_pred -------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcE-----EEEeccCCCCcCCCCeeEEEECCC
Q 011970 305 -------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL-----VTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 305 -------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~l-----l~tl~gH~~~~~~~~v~svafSpD 369 (474)
.+..+ .+...+..++| ++|.++++.- .+.|..-+++ +.. ...+-+-.. ....|++.||
T Consensus 253 ~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~-----rp~~v~~~pd 325 (352)
T 2ism_A 253 NDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG-----RLREVQVGPD 325 (352)
T ss_dssp CCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC-----CEEEEEECTT
T ss_pred CCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCC-----CeeEEEECCC
Confidence 11222 22346778888 7899888876 7777777764 321 122221111 2689999999
Q ss_pred CCEEEEEe
Q 011970 370 QDLIISYC 377 (474)
Q Consensus 370 g~~LaS~s 377 (474)
|.+.++..
T Consensus 326 G~lyv~~~ 333 (352)
T 2ism_A 326 GALYVTTS 333 (352)
T ss_dssp SCEEEEEC
T ss_pred CcEEEEEe
Confidence 99988754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=80.37 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=114.0
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC----CeEEEEEeecCcceeEEEEE
Q 011970 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED----GTVLKVFYHLLHRNKKVDFI 279 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t----G~~L~tl~~h~~~v~~V~F~ 279 (474)
....|++-++.+++....+. ...+..|+|++ +++|..+. ...+.|+.+++.+ ......+.........|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD--~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECC--TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEe--cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 44678888888766544443 24677899996 66666553 3356788888865 12111121112233456654
Q ss_pred ecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-C-CcEEEEeCCCcEEEEeccCCCC
Q 011970 280 EQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLW 355 (474)
Q Consensus 280 ~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D-~tIklWd~~G~ll~tl~gH~~~ 355 (474)
+.++.|..+ ...+.|.+.|+.......+.......+..+++.|+ |.++.+-. . ++|...+++|...+.+-.....
T Consensus 462 -~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 -WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp -CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred -eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 235566665 56789999998766555554545567899999984 66666654 3 7888888888766555322222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
. -+.|+|+|+++.|.-+.. ..+.|...|+. |.-.+++
T Consensus 541 ~----PnGlavd~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 541 W----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp S----CCCEEECTTTCCEEEEET----------TTTEEEEECSS-SSCCEEE
T ss_pred C----ccEEEEeccCCEEEEEec----------CCCeEEEEccC-CCceEEE
Confidence 2 378999998665544322 26789999974 5444444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.079 Score=57.64 Aligned_cols=227 Identities=11% Similarity=0.109 Sum_probs=148.2
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccc
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 185 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~ 185 (474)
..+.|+.-++++.+....+....-.....|+|.+.++.|--+. ... +.|...++ .|.... .+... .+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD--~~~-------~~I~r~~~-~g~~~~--~v~~~-g~ 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD--ISL-------KTISRAFM-NGSALE--HVVEF-GL 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEET-TSCSCE--EEECS-SC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE--CCC-------CeEEEEEC-CCCCcE--EEEeC-CC
Confidence 5567778887765543333322224578999999887765432 222 34544453 343211 23332 25
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
..|..++++..+|++..+-...+.|.+-++.... ..++- -..-.+|++.| ++.|..+.. +....|...++ +|.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~-dG~ 156 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAM-DGS 156 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEET-TSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeC-CCC
Confidence 5788999986678888888888999999986443 23332 24678999998 666666543 22346777776 455
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
...++.....+-..|++. +++++|..+ ...+.|...|+..+.. +++......+.++++.. +.++.|-. .+.|..-
T Consensus 157 ~~~~l~~~~~~P~GlalD-~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 157 ERTTLVPNVGRANGLTID-YAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp SCEEEECSCSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ceEEEECCCCCcceEEEc-cccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 455554444566788886 556777777 5788999999876544 55555666788888754 78888887 8899999
Q ss_pred eC-CCcEEEEecc
Q 011970 340 NF-RGELVTSFED 351 (474)
Q Consensus 340 d~-~G~ll~tl~g 351 (474)
|. +|+-.+.+..
T Consensus 234 dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 234 NKTSGQNRTIIQG 246 (628)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEec
Confidence 96 5775555544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.036 Score=60.31 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=124.8
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeE
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~--~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~ 275 (474)
+|..+ ....|+.-|+++......+. + .....|+|.+ ++.+..+. ...+.|..+++..+.....+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD--~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE--CCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 34433 45678888988655444443 2 4788999997 66666654 34578988988654443334322345567
Q ss_pred EEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc--CCcEEEEeCCCcEEEEecc
Q 011970 276 VDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFED 351 (474)
Q Consensus 276 V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s--D~tIklWd~~G~ll~tl~g 351 (474)
+++. +.++.|..+ ...+.|.+-|+...............+..+++.| +|.++.|-. ...|...+++|...+.+-.
T Consensus 85 lAvD-~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~ 163 (628)
T 4a0p_A 85 MAVD-WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP 163 (628)
T ss_dssp EEEE-TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEEE-eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence 7775 346777665 5788999999876554333445667899999997 788888863 5688888888776555544
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
...+ -+.|++.++++.|.-+.. ..+.|...|+. |.-...+
T Consensus 164 ~~~~-----P~GlalD~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~v~ 203 (628)
T 4a0p_A 164 NVGR-----ANGLTIDYAKRRLYWTDL----------DTNLIESSNML-GLNREVI 203 (628)
T ss_dssp SCSS-----EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred CCCC-----cceEEEccccCEEEEEEC----------CCCEEEEEcCC-CCceEEe
Confidence 4344 479999998777765532 36789888874 4333444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0065 Score=59.21 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=119.7
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
|.|-. +-+-.++|+|++++|.+++. . + ..+-.-|.. |+....+++-. ..-+..|++. ++|.++++
T Consensus 22 l~g~~-~~lSGla~~~~~~~L~aV~d--~-~------~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~-~~g~~~vs 86 (255)
T 3qqz_A 22 IAGIT-NNISSLTWSAQSNTLFSTIN--K-P------AAIVEMTTN-GDLIRTIPLDF---VKDLETIEYI-GDNQFVIS 86 (255)
T ss_dssp CTTCC-SCEEEEEEETTTTEEEEEEE--T-T------EEEEEEETT-CCEEEEEECSS---CSSEEEEEEC-STTEEEEE
T ss_pred CCCcc-cCcceeEEeCCCCEEEEEEC--C-C------CeEEEEeCC-CCEEEEEecCC---CCChHHeEEe-CCCEEEEE
Confidence 44433 34999999999999988763 2 2 344444544 87655443211 2345679997 78988777
Q ss_pred ecCCCcEEEeecCCCeE---EEEE--c------CCcEEEEEEcC-CceEEEEecCCCCccEEEEecC---CCeEEEEEee
Q 011970 204 SAQDSIYKVFDLKNYTM---LYSI--S------DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE---DGTVLKVFYH 268 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~---l~tl--~------~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~---tG~~L~tl~~ 268 (474)
.-.++.+-+.++..... +... . ......|+++| +++|.++... .+..||.+. ++..+..+..
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~---~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK---NPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES---SSEEEEEEESTTCSSCCEEEEC
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc---CCceEEEEcccccCCceeeecc
Confidence 66778888888764331 2222 1 12458999998 5577666432 355565553 2222232321
Q ss_pred -------cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--cc-cc------CCceEEEEEcCCCcEEEEEc
Q 011970 269 -------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SR-TE------FMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 269 -------h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~-~h------~~~v~sv~Fspdg~llaS~s 332 (474)
+......|+|.|..+..++.+++.+.|-+.|.+ |+.+.. |. +. ...+..|+|.|+|++++++-
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE 242 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 242 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence 223457899987665555557899999999955 665543 33 32 24788999999999999864
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.026 Score=54.96 Aligned_cols=182 Identities=11% Similarity=0.167 Sum_probs=116.2
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe---
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT--- 261 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~--- 261 (474)
+..++|+|.++.+.|....++.|-.-|++ |+.+.++. + ...-.|++.+++.++++.. .+..+.+.++.+..
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDE--RDYAIYVISLTPNSEVK 105 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEET--TTTEEEEEEECTTCCEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCCeee
Confidence 44799984345555556668888888887 89888875 2 4788899998777766643 34677788775433
Q ss_pred EEEEEe-ec-----CcceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEEec-------cccCCceEEEEEcCC-
Q 011970 262 VLKVFY-HL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVS-------RTEFMTPSAFIFLYE- 324 (474)
Q Consensus 262 ~L~tl~-~h-----~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~~l-------~~h~~~v~sv~Fspd- 324 (474)
.+.... .+ ......+++. +.+++|.++.+.....||.+. ++..+..+ ..+...+++++|.|.
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 233332 11 1123789987 456778877665566666654 12222222 113346789999875
Q ss_pred CcEEEEEc-CCcEEEEeCCCcEEEEeccCCC------CcCCCCeeEEEECCCCCEEEE
Q 011970 325 NQLFLTFR-NRTVAVWNFRGELVTSFEDHLL------WHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~G~ll~tl~gH~~------~~~~~~v~svafSpDg~~LaS 375 (474)
|++++.+. .+.+-..|.+|+.+..+.=... .++. -..|+|.|+|++.++
T Consensus 185 g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~q--pEGia~d~~G~lyIv 240 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQ--AEGVAMDASGNIYIV 240 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCS--EEEEEECTTCCEEEE
T ss_pred CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCC--CCeeEECCCCCEEEE
Confidence 45555555 8899999999997664431111 1111 378999999998887
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.038 Score=55.36 Aligned_cols=143 Identities=12% Similarity=0.124 Sum_probs=81.7
Q ss_pred ccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEE---EEc------CCcEEEEEEcC----CceEEEEecC-CC-
Q 011970 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLY---SIS------DKHVQEIKISP----GIMLLIFNRS-SS- 248 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~---tl~------~~~V~~vafSp----g~~la~~s~~-s~- 248 (474)
+..|..++|+ |||+ ++++- .++.|++++. +|.... .+. ......|+|+| ++.|.++... ..
T Consensus 17 l~~P~~i~~~-pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFL-PDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEEC-STTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEc-CCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 6788899998 7999 87765 5688999984 454321 111 23578999998 4655554321 11
Q ss_pred ---CccEEEEecCCC--eE--EEE----Ee---ecCcceeEEEEEecCCCeEEEEeCC--------------CcEEEEEC
Q 011970 249 ---HVPLKILSIEDG--TV--LKV----FY---HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDV 300 (474)
Q Consensus 249 ---D~tIkLWdi~tG--~~--L~t----l~---~h~~~v~~V~F~~~~~~~ll~~~~D--------------~tIkIWDv 300 (474)
...|..+++..+ ++ .++ +. ...|.-..+.|. |+| +|.++..| +.|.-.|.
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCC-cEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 124555665433 11 111 21 112344679987 444 66665322 34555565
Q ss_pred CCC------------ceEEeccccCCceEEEEEcC-CCcEEEEEc
Q 011970 301 RNA------------ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR 332 (474)
Q Consensus 301 ~tg------------~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s 332 (474)
... ...++.......++.++|.| +|+++++-.
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 432 01222222223588999999 899888754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.035 Score=56.76 Aligned_cols=171 Identities=15% Similarity=0.235 Sum_probs=108.5
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecC---CCe--EEEEe--C--CCcEEEEEC--CCCceEEecc------cc
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF---NEK--LLVKQ--E--NENLQILDV--RNAELMEVSR------TE 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~---~~~--ll~~~--~--D~tIkIWDv--~tg~~~~~l~------~h 312 (474)
.-+.+.|+ +|+.|+.+.. ++...|+.-+.+ +++ +++.+ . +++|.++++ .++++..... ..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA 126 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence 57999999 9999999974 567777775421 222 44443 4 689999966 5666544411 22
Q ss_pred CCceEEEEE--cC-CCc--EEEEEcCCcEEEEeC--------CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 313 FMTPSAFIF--LY-ENQ--LFLTFRNRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 313 ~~~v~sv~F--sp-dg~--llaS~sD~tIklWd~--------~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
...++.+++ +| .|+ .+++..++.+..|++ +++++++|.--.. +..++..|....|.-+-.
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq------~EgcvvDd~~g~Lyv~eE- 199 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ------TEGMAADDEYGRLYIAEE- 199 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC------EEEEEEETTTTEEEEEET-
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC------cceEEEcCCCCeEEEecc-
Confidence 267888888 77 454 344434999999998 1357888875443 578888887777776543
Q ss_pred CCccccccCCCCeEEEEeCC-----CCeEEEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 380 EPEDQWMEGSAGSINVSSIL-----TGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~-----tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
|.-|.-.|.. +++.+..+.+ |-. ..+..|++
T Consensus 200 ----------d~GIw~~da~p~~~~~~~~v~~~~~g~l~---------------------------------aDvEGLai 236 (355)
T 3amr_A 200 ----------DEAIWKFSAEPDGGSNGTVIDRADGRHLT---------------------------------RDIEGLTI 236 (355)
T ss_dssp ----------TTEEEEEECSTTSCSCCEEEEEBSSSSBC---------------------------------SCEEEEEE
T ss_pred ----------cceEEEEeCCcCCCCCceEEEEecCCccc---------------------------------cCcceEEE
Confidence 4334333432 4566665521 110 16777776
Q ss_pred --cCCCC-EEEEEc-CCCcEEEcc
Q 011970 454 --DEERN-EIYTGN-RHGLVHVWS 473 (474)
Q Consensus 454 --SpDg~-~LaSgs-~DgtVklWd 473 (474)
.+||+ +|+..+ .+++..++|
T Consensus 237 ~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 237 YYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EecCCCCEEEEEEcCCCCEEEEEE
Confidence 67777 455444 677888876
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.18 Score=51.10 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=84.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE--EEEEc------CCcEEEEEEcCC----ceEEE-EecCCCCc
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIKISPG----IMLLI-FNRSSSHV 250 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~--l~tl~------~~~V~~vafSpg----~~la~-~s~~s~D~ 250 (474)
.+..|+.++|. |||.+|++--..+.|++++..+|+. +..+. ......|+|+|+ +.|.. .+.. .+.
T Consensus 30 gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~ 107 (347)
T 3das_A 30 GLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDN 107 (347)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSE
T ss_pred CCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCC
Confidence 37788899998 7999998876689999998777764 33332 246889999983 55543 3322 234
Q ss_pred cEEEEecCCC----------eE-EEEEe-ecCcceeEEEEEecCCCeEEEE-eC-------------CCcEEEEECCCCc
Q 011970 251 PLKILSIEDG----------TV-LKVFY-HLLHRNKKVDFIEQFNEKLLVK-QE-------------NENLQILDVRNAE 304 (474)
Q Consensus 251 tIkLWdi~tG----------~~-L~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~-------------D~tIkIWDv~tg~ 304 (474)
.|--|....+ +. +..+. ...|.-..+.|. ++| +|.++ ++ -+.|--.|....-
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4544554431 22 23343 223556789997 455 55554 32 1222222433210
Q ss_pred -------eEEec-cccCCceEEEEEcCCCcEEEEEc
Q 011970 305 -------LMEVS-RTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 305 -------~~~~l-~~h~~~v~sv~Fspdg~llaS~s 332 (474)
-.+++ .||- .+..++|.|+|+++++-.
T Consensus 186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence 01121 2343 467899999999988754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.047 Score=54.85 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=85.0
Q ss_pred CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe-EEEEEe---ecCcceeEEEEEecC---CCeEEEEeC----C---
Q 011970 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-VLKVFY---HLLHRNKKVDFIEQF---NEKLLVKQE----N--- 292 (474)
Q Consensus 227 ~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~-~L~tl~---~h~~~v~~V~F~~~~---~~~ll~~~~----D--- 292 (474)
..-+.++|.|++.|+++.. ++.|++++ .+|+ .+..+. ........|+|. |+ ++.|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~---~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTER---PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEET---TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeC---CCEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCc
Confidence 4578999998777777754 37888887 5776 222221 123456889987 44 567776532 3
Q ss_pred -CcEEEEECCCC--c------eEEec-cccCCceEEEEEcCCCcEEEEEcC--------------CcEEEEeCCCc----
Q 011970 293 -ENLQILDVRNA--E------LMEVS-RTEFMTPSAFIFLYENQLFLTFRN--------------RTVAVWNFRGE---- 344 (474)
Q Consensus 293 -~tIkIWDv~tg--~------~~~~l-~~h~~~v~sv~Fspdg~llaS~sD--------------~tIklWd~~G~---- 344 (474)
..|..++...+ . ++..+ .+.......++|.|||.++++..| +.|.-.|.+|+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777777654 1 11211 122234577999999999998543 34444444564
Q ss_pred ------EEEEeccCCCCcCCCCeeEEEECC-CCCEEEEE
Q 011970 345 ------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISY 376 (474)
Q Consensus 345 ------ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~ 376 (474)
.+. -.||.. .+.++|.| +|++.++-
T Consensus 184 npf~~~~i~-a~G~rn------p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHRN------PQGIDWHRASGVMVATE 215 (354)
T ss_dssp SSSTTCCEE-EECCSC------CCEEEECTTTCCEEEEE
T ss_pred CCCCCCcEE-EEccCC------cceEEEeCCCCCEEEEe
Confidence 121 235544 36899999 78887764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.14 Score=51.98 Aligned_cols=171 Identities=9% Similarity=0.119 Sum_probs=99.9
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEE-EEcC--------CcEEEEEE---cCCceEEEEecCCCCccEE
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISD--------KHVQEIKI---SPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~-tl~~--------~~V~~vaf---Spg~~la~~s~~s~D~tIk 253 (474)
-+|..+.|++.+|.+++|.-..++|-.||...+.... .+.+ ..+..|.+ -|+++|++....+
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~------ 86 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA------ 86 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET------
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc------
Confidence 4677899986789999988899999999987664332 2322 02455666 3444443321100
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEEe--ccc-----------cCCceE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEV--SRT-----------EFMTPS 317 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~~--l~~-----------h~~~v~ 317 (474)
.+|... +.. -+.+.-|..+|+. +++.+.. |.+ ....+.
T Consensus 87 ----------------------~af~~~-g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 87 ----------------------KSFNFA-DQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp ----------------------TTTCTT-SCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred ----------------------cccccc-ccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 000000 000 0124455566666 5554322 211 122467
Q ss_pred EEEEcCCCcEEEEEc-C-CcEEEEeCCCcEEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 318 AFIFLYENQLFLTFR-N-RTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D-~tIklWd~~G~ll~tl~-gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.++.-++|+..++++ - +.|-..+.+|+.+..+. ........+..+.|+++|||++|+... + ++.+-
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~----------~-~g~L~ 209 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG----------G-PRALT 209 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES----------S-SSSEE
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc----------C-CCeEE
Confidence 888899999999888 7 77666666687555442 111111123357999999999888753 3 78888
Q ss_pred EEeCC
Q 011970 395 VSSIL 399 (474)
Q Consensus 395 lWdi~ 399 (474)
-.|+.
T Consensus 210 ~fD~~ 214 (334)
T 2p9w_A 210 AFDVS 214 (334)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 88875
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=1 Score=45.62 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=108.8
Q ss_pred CceEEEEeCCCCeEEEEec------------CCCcEEEeecCC--CeEE-EEEcC-------CcEEEEEEcC---C-ceE
Q 011970 187 WPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKN--YTML-YSISD-------KHVQEIKISP---G-IML 240 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s------------~D~tiKlWdl~t--g~~l-~tl~~-------~~V~~vafSp---g-~~l 240 (474)
.+..++.. |+|..+++++ .+|.|-++|+++ ++.. ..+.+ -.-..|.+.+ | ..|
T Consensus 51 G~EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 35577786 6888877763 688899999873 3421 12222 2456666643 3 245
Q ss_pred EEEecCCCCccEEEEecCCC-e---EEEEEeec-CcceeEEEEEecCCCeEEEEeC----C------------CcEEEEE
Q 011970 241 LIFNRSSSHVPLKILSIEDG-T---VLKVFYHL-LHRNKKVDFIEQFNEKLLVKQE----N------------ENLQILD 299 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG-~---~L~tl~~h-~~~v~~V~F~~~~~~~ll~~~~----D------------~tIkIWD 299 (474)
.+........+|.||++..+ . .+.++.+. ..+...+.+.+ ++.+.++.. | .+=+||-
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 55544434578999887653 2 34455542 23457787764 345555432 1 2334554
Q ss_pred CCCCceEEeccccCCceEEEEEcCCCcEEE-EEc-CCcEEEEeCC--CcEE--EEeccCCCCcCCCCeeEEEECC-CCCE
Q 011970 300 VRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR-NRTVAVWNFR--GELV--TSFEDHLLWHPDCNTNNIYITS-DQDL 372 (474)
Q Consensus 300 v~tg~~~~~l~~h~~~v~sv~Fspdg~lla-S~s-D~tIklWd~~--G~ll--~tl~gH~~~~~~~~v~svafSp-Dg~~ 372 (474)
+..+++.. +......+..++||||++.|. +-+ .++|..++++ |++. +.|. .... -.++++.+ +|.+
T Consensus 208 ~d~~~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~----PDGi~vD~e~G~l 280 (355)
T 3sre_A 208 YSPNDVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTL----VDNISVDPVTGDL 280 (355)
T ss_dssp ECTTCCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSE----EEEEEECTTTCCE
T ss_pred EECCeEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCC----CceEEEeCCCCcE
Confidence 44455443 334456789999999997554 445 8899999984 6542 3452 1222 36899999 5999
Q ss_pred EEEEe
Q 011970 373 IISYC 377 (474)
Q Consensus 373 LaS~s 377 (474)
.+++.
T Consensus 281 wva~~ 285 (355)
T 3sre_A 281 WVGCH 285 (355)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.52 Score=47.85 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=82.6
Q ss_pred CccEEEEecC--CCeEEE-EEee-----cCcceeEEEEEec-CCC-eEEEE-e--CCCcEEEEECCCC--c--eEEeccc
Q 011970 249 HVPLKILSIE--DGTVLK-VFYH-----LLHRNKKVDFIEQ-FNE-KLLVK-Q--ENENLQILDVRNA--E--LMEVSRT 311 (474)
Q Consensus 249 D~tIkLWdi~--tG~~L~-tl~~-----h~~~v~~V~F~~~-~~~-~ll~~-~--~D~tIkIWDv~tg--~--~~~~l~~ 311 (474)
++.|-++|.. +++... .+.+ ..-+--.+++.+. ++. +|.+. . .+.+|.||++..+ . ++....+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 5668888876 333211 2222 1123456666542 333 45554 2 4789999887653 2 2233333
Q ss_pred -cCCceEEEEEcCCCcEEEEEc----C------------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 312 -EFMTPSAFIFLYENQLFLTFR----N------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 312 -h~~~v~sv~Fspdg~llaS~s----D------------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
....+..+++.++|.+.++.. | .+=+||-++ |++..-.++-.. -|.|+|||||++|
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~------pNGia~spDg~~l 235 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDF------ANGINISPDGKYV 235 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESS------EEEEEECTTSSEE
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcc------cCcceECCCCCEE
Confidence 346789999999999988853 2 234566665 554433333222 4899999999887
Q ss_pred EEEecCCCccccccCCCCeEEEEeCC-CCe
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSIL-TGK 402 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~-tG~ 402 (474)
.-+.. ..+.|..+++. +|+
T Consensus 236 Yvadt----------~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 236 YIAEL----------LAHKIHVYEKHANWT 255 (355)
T ss_dssp EEEEG----------GGTEEEEEEECTTSC
T ss_pred EEEeC----------CCCeEEEEEECCCCc
Confidence 76532 36889999985 344
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.04 E-value=1.5 Score=44.33 Aligned_cols=229 Identities=12% Similarity=0.119 Sum_probs=119.0
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeeccccce--eeEee---cCCCceEEEEEEeeC----CCEEEEEEeecCCCcccee
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLN---VSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~~tg~~--l~~l~---g~~~~~i~sv~fspd----g~~Lis~S~~~s~d~s~Lk 159 (474)
-+.|+|. |.++++--..|.|++++..+|+. +..+. .........|+|+|| |...++-+ ....+
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt-~~~~~----- 107 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT-SASDN----- 107 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE-CSSSE-----
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe-cCCCC-----
Confidence 3566666 66666655599999998666654 22221 112456789999995 54334322 11222
Q ss_pred eeEEEEeEeccC-----CCCCccceeee---ccccCceEEEEeCCCCeEEEEecC--------C---CcEEEeecC-CCe
Q 011970 160 CRSTKIEYIRRG-----KPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQ--------D---SIYKVFDLK-NYT 219 (474)
Q Consensus 160 ~~~~~iw~i~~G-----~~~~~~~lf~~---~~~~~~~~V~Fs~~nGk~LaS~s~--------D---~tiKlWdl~-tg~ 219 (474)
+-.|+-+ ..+ ++.....++.. ....+...++|+ |||++.++-+. | ..=|||.+. .|+
T Consensus 108 -~v~R~~~-~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 108 -RIVRMLY-DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp -EEEEEEB-CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred -EEEEEEe-CCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 2233222 222 22222234432 111233469998 79998777432 1 122344433 232
Q ss_pred ----------EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE------------------EEEEeecCc
Q 011970 220 ----------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV------------------LKVFYHLLH 271 (474)
Q Consensus 220 ----------~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~------------------L~tl~~h~~ 271 (474)
.++..--.+.+.++|.|++.|.+... +.|..=.|--++.|.- +..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~-g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF-GQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC-CSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec-CCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 23333234678899998666666542 3333222222222221 111211111
Q ss_pred ceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCc----eEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 272 RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~----~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
.-..++|. ++.++.+. ..+.|.-..+..+. ....+.+....+..|++.|||.++++..
T Consensus 264 ap~G~~~~---~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA---EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE---TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE---cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 23567776 35666654 45555555655442 2345666667899999999999988764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.41 Score=48.44 Aligned_cols=158 Identities=10% Similarity=0.122 Sum_probs=98.7
Q ss_pred eEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEecccc-------CCceEEEEE---cCCCcEEEEEc----------
Q 011970 274 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE-------FMTPSAFIF---LYENQLFLTFR---------- 332 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h-------~~~v~sv~F---spdg~llaS~s---------- 332 (474)
.+++|. +.++.+..++ ..++|-.||...+...++.-.+ ...++.+.+ -|+|++++...
T Consensus 16 E~~~wd-~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYD-RTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEE-TTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCc-CCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 345554 3357777877 7999999999866554442221 124688999 48899998532
Q ss_pred ----CCcEEEEeCC----CcEEE--EeccCCCC-------cCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEE
Q 011970 333 ----NRTVAVWNFR----GELVT--SFEDHLLW-------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSIN 394 (474)
Q Consensus 333 ----D~tIklWd~~----G~ll~--tl~gH~~~-------~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D-gtIk 394 (474)
++.|..+|+. |+.+. .|.+.... .+ ...+.+++-++|+.-++++. - +.|-
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~-~~~nDvavD~~GnaYVt~s~-----------~~~~I~ 162 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP-FGVVQSAQDRDGNSYVAFAL-----------GMPAIA 162 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC-EEEEEEEECTTSCEEEEEEE-----------SSCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc-cCCceeEECCCCCEEEeCCC-----------CCCeEE
Confidence 5678899987 77654 33322210 00 01589999999999999886 4 5555
Q ss_pred EEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 395 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..+. .|+.+..+--.. |... ..-..+.++|+|||+.|+.....|.+.-.|
T Consensus 163 rV~p-dG~~~~~~~~~~--~~~~--------------------------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 163 RVSA-DGKTVSTFAWES--GNGG--------------------------QRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EECT-TSCCEEEEEECC--CCSS--------------------------SCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred EEeC-CCCEEeeeeecC--CCcc--------------------------cccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 5553 466444432111 0000 001456789999999988776677665443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=2.1 Score=40.32 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=96.1
Q ss_pred CCCeEEEEec-CC-----CcEEEeecCCCeEEE--EEcCC-cEEEEEEcCCceEEEEecCC--CCccEEEEecCCCe---
Q 011970 196 VNGKVLTYSA-QD-----SIYKVFDLKNYTMLY--SISDK-HVQEIKISPGIMLLIFNRSS--SHVPLKILSIEDGT--- 261 (474)
Q Consensus 196 ~nGk~LaS~s-~D-----~tiKlWdl~tg~~l~--tl~~~-~V~~vafSpg~~la~~s~~s--~D~tIkLWdi~tG~--- 261 (474)
.++++++.|+ .+ ..+.++|+.+.+-.. .++.. .-.+++...+.+++.++..+ ....+.++|+.+++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 3566777776 32 367788887766221 22211 11122223444444433211 11358899998876
Q ss_pred E--EEEEeecCcce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEEE
Q 011970 262 V--LKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 262 ~--L~tl~~h~~~v-~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS~ 331 (474)
- +..+.. .+. ..+... ++..++.|+.+ ..+.++|+.+.+-.+.. ...-....++ ..++++++.|
T Consensus 93 W~~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~G 166 (301)
T 2vpj_A 93 WYSVAPMNV--RRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV--VASGVIYCLG 166 (301)
T ss_dssp CEEECCCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE--EETTEEEEEC
T ss_pred eEECCCCCC--CccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE--EECCEEEEEC
Confidence 3 222221 111 222322 23444445533 46889999988765432 1111111222 3378888887
Q ss_pred c-C-----CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 332 R-N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 332 s-D-----~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+ + ..+.++|.....-..+..-... ...-..+. -++++++.|+.... ..-..|.++|+.+++-.
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATK--RSGAGVAL--LNDHIYVVGGFDGT------AHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEE--ETTEEEEECCBCSS------SBCCCEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCCCcc--cccceEEE--ECCEEEEEeCCCCC------cccceEEEEeCCCCcEE
Confidence 5 4 4688889854433333221111 11111222 37788887765210 01357889999887654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.38 Score=50.49 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=48.9
Q ss_pred eEEeccccCCceEEEEEcCCCc--EEEEEcCCcEEEEeCCCcE----EEEeccCCCC----cCCCCeeEEEECCC----C
Q 011970 305 LMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFRGEL----VTSFEDHLLW----HPDCNTNNIYITSD----Q 370 (474)
Q Consensus 305 ~~~~l~~h~~~v~sv~Fspdg~--llaS~sD~tIklWd~~G~l----l~tl~gH~~~----~~~~~v~svafSpD----g 370 (474)
+++++......+++++|.|||. +|++-..|.|++++.+|.. +..+..-... ........|+|+|| +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 4455555567899999999995 8888889999999876542 2222210000 00012578999996 8
Q ss_pred CEEEEEec
Q 011970 371 DLIISYCK 378 (474)
Q Consensus 371 ~~LaS~s~ 378 (474)
.+.++++.
T Consensus 85 ~lYv~yt~ 92 (463)
T 2wg3_C 85 KLYVSYTT 92 (463)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 88888875
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.81 Score=47.59 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=47.5
Q ss_pred eEEeccccCCceEEEEEcCCCcEEEEEcC-CcEEEEeCC-CcE--EEEeccCCC-CcCCCCeeEEEECC----CCCEEEE
Q 011970 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR-GEL--VTSFEDHLL-WHPDCNTNNIYITS----DQDLIIS 375 (474)
Q Consensus 305 ~~~~l~~h~~~v~sv~Fspdg~llaS~sD-~tIklWd~~-G~l--l~tl~gH~~-~~~~~~v~svafSp----Dg~~LaS 375 (474)
.++++......+++++|.|||+++++-.. +.|.+++.. |+. +..+..-.. .........|+|+| +|.+.++
T Consensus 18 ~~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 18 DKKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 34444444568999999999999999885 578888874 653 334432100 00001246899999 6777777
Q ss_pred Eec
Q 011970 376 YCK 378 (474)
Q Consensus 376 ~s~ 378 (474)
++.
T Consensus 98 ~s~ 100 (454)
T 1cru_A 98 GTF 100 (454)
T ss_dssp EEE
T ss_pred Eec
Confidence 753
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.61 E-value=3.4 Score=42.87 Aligned_cols=103 Identities=8% Similarity=0.151 Sum_probs=63.2
Q ss_pred CcceeEEEEEecCCCeEEEEeCCC-cEEEEECCCCceEE--eccc------cCCceEEEEEcC----CCcEEEEEcC---
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELME--VSRT------EFMTPSAFIFLY----ENQLFLTFRN--- 333 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~-tIkIWDv~tg~~~~--~l~~------h~~~v~sv~Fsp----dg~llaS~sD--- 333 (474)
...-+.++|.+ ++.|+++...+ .|++++..+|+... .+.. ....+..++|+| ++.+.++-+.
T Consensus 26 l~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 45568999874 45677776664 79999876666432 2221 234567899999 6888887641
Q ss_pred ----------CcEEEEeCC-C--c------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 334 ----------RTVAVWNFR-G--E------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 334 ----------~tIklWd~~-G--~------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
..|.-++.+ + + ++..+.. ...| ....|+|.|||.+.++-+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H---~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDH---QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSC---CEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCC---CCCeEeECCCCeEEEEECC
Confidence 234444442 2 1 1222332 1122 1478999999999998653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.59 E-value=4 Score=40.46 Aligned_cols=233 Identities=9% Similarity=0.089 Sum_probs=118.6
Q ss_pred EEEEee--ccEEEEeeCCCeEEeeeccccceeeEee------cCCCceEEEEEEeeC----CCEEEEEEeecCCCcccee
Q 011970 92 IEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLN------VSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 92 ~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~------g~~~~~i~sv~fspd----g~~Lis~S~~~s~d~s~Lk 159 (474)
+.|+|. |..|+.+...|.|++++.. |+....+. .........|+|+|| |...++-+..+.++-..
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~-- 97 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG-- 97 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE--
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce--
Confidence 456666 6525555678999998853 54321111 112235689999995 54444422211111000
Q ss_pred eeEEEEeEeccC--CCCCccceeee-----ccccCceEEEEeCCCCeEEEEecCC-------------CcEEEeecCCCe
Q 011970 160 CRSTKIEYIRRG--KPDSGFALFES-----ESLKWPGFVEFDDVNGKVLTYSAQD-------------SIYKVFDLKNYT 219 (474)
Q Consensus 160 ~~~~~iw~i~~G--~~~~~~~lf~~-----~~~~~~~~V~Fs~~nGk~LaS~s~D-------------~tiKlWdl~tg~ 219 (474)
..+.-+++..+ ++.....++.. ....++..++|+ |||.+.++-+.. +.|.-.|.. |+
T Consensus 98 -~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~ 174 (353)
T 2g8s_A 98 -TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GE 174 (353)
T ss_dssp -EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SC
T ss_pred -eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CC
Confidence 12222222211 22111112221 111235579998 799877765431 234444543 32
Q ss_pred ---------------EEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe----------------------
Q 011970 220 ---------------MLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---------------------- 261 (474)
Q Consensus 220 ---------------~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~---------------------- 261 (474)
.++..--.+.+.++|.| ++.|.++... .+..=+|.-++.|.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 23333335689999998 7777666432 12111222222221
Q ss_pred ---------EEEEEeecCcceeEEEEEec-----CCCeEEEEe-CCCcEEEEECCCCceEE---eccccCCceEEEEEcC
Q 011970 262 ---------VLKVFYHLLHRNKKVDFIEQ-----FNEKLLVKQ-ENENLQILDVRNAELME---VSRTEFMTPSAFIFLY 323 (474)
Q Consensus 262 ---------~L~tl~~h~~~v~~V~F~~~-----~~~~ll~~~-~D~tIkIWDv~tg~~~~---~l~~h~~~v~sv~Fsp 323 (474)
.+..+..| .....++|..- ..+.++++. ..+.|...++..++... .+.+....+..+++.|
T Consensus 254 ~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 11222222 23456777531 235677664 67788888877665432 2334456899999999
Q ss_pred CCcEEEEEc
Q 011970 324 ENQLFLTFR 332 (474)
Q Consensus 324 dg~llaS~s 332 (474)
||.++++..
T Consensus 333 dG~lyv~td 341 (353)
T 2g8s_A 333 DGYLYVLTD 341 (353)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 999988643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=9.5 Score=44.47 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=121.8
Q ss_pred CCcEEEeecCCCe--EEEEEc-CCcEEEEEEcC-CceEEEEecCC-----------------------------------
Q 011970 207 DSIYKVFDLKNYT--MLYSIS-DKHVQEIKISP-GIMLLIFNRSS----------------------------------- 247 (474)
Q Consensus 207 D~tiKlWdl~tg~--~l~tl~-~~~V~~vafSp-g~~la~~s~~s----------------------------------- 247 (474)
++++||.-+.+-+ .+.+++ +..+..|+++| .+++++.....
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSST 793 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----
T ss_pred CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccc
Confidence 5669998876433 344555 67888899997 44433322110
Q ss_pred -----------CCccEEEEecCCCeEEEEEeec-CcceeEEEEEec---CCCeEEEEe------C----CCcEEEEECCC
Q 011970 248 -----------SHVPLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQ---FNEKLLVKQ------E----NENLQILDVRN 302 (474)
Q Consensus 248 -----------~D~tIkLWdi~tG~~L~tl~~h-~~~v~~V~F~~~---~~~~ll~~~------~----D~tIkIWDv~t 302 (474)
.-..|+|.|-.+.+.+.+++-. ...+.++..... ..+.+++|- + .|-|.++++..
T Consensus 794 ~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~ 873 (1158)
T 3ei3_A 794 APHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD 873 (1158)
T ss_dssp ------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET
T ss_pred cCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC
Confidence 0124899999999988887622 234455554321 135777763 1 26799999986
Q ss_pred CceEEecc-ccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 303 AELMEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 303 g~~~~~l~-~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+++..+.. ...+.|++++= -+|+++ .+-.++|+||++. .+.++ .+. +-.. |..+.+...|++|+-|..
T Consensus 874 ~kL~lv~~~~v~g~v~al~~-~~g~Ll-a~ig~~l~vy~l~~~~~L~-~~~~~~~~-----i~~~~l~~~~~~I~vgD~- 944 (1158)
T 3ei3_A 874 GKLQTVAEKEVKGAVYSMVE-FNGKLL-ASINSTVRLYEWTTEKELR-TECNHYNN-----IMALYLKTKGDFILVGDL- 944 (1158)
T ss_dssp TEEEEEEEEEESSCEEEEEE-ETTEEE-EEETTEEEEEEECTTSCEE-EEEEECCC-----SCEEEEEEETTEEEEEES-
T ss_pred CEEEEEEEEEcCCcCEEEee-eCCEEE-EEcCCEEEEEECCCCceEE-EEeecccc-----EEEEEEeccCCEEEEEEh-
Confidence 65543322 23467888752 246555 4456899999995 44444 221 1111 223344446778887653
Q ss_pred CCccccccCCCCeEEE--EeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 380 EPEDQWMEGSAGSINV--SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 380 ~~~~~~~~s~DgtIkl--Wdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
-..|-+ |+-..++. ..+-.+.. | .+|+++.|=-++
T Consensus 945 ----------~~Sv~~~~y~~~~~~L-~~~a~D~~-~-------------------------------~~vta~~~ld~~ 981 (1158)
T 3ei3_A 945 ----------MRSVLLLAYKPMEGNF-EEIARDFN-P-------------------------------NWMSAVEILDDD 981 (1158)
T ss_dssp ----------SBCEEEEEEETTTTEE-EEEEECCS-C-------------------------------BCEEEEEEEETT
T ss_pred ----------hheEEEEEEEcCCCeE-EEEEeecc-c-------------------------------ccEEEEEEEccC
Confidence 344444 34333333 23322221 1 288899886554
Q ss_pred CEEEEEcCCCcEEEc
Q 011970 458 NEIYTGNRHGLVHVW 472 (474)
Q Consensus 458 ~~LaSgs~DgtVklW 472 (474)
.++.+..+|.+.+.
T Consensus 982 -t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 982 -NFLGAENAFNLFVC 995 (1158)
T ss_dssp -EEEEEETTSEEEEE
T ss_pred -cEEEEcCCCcEEEE
Confidence 66678888887764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.47 E-value=3.3 Score=43.50 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=92.0
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccc----cCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-Cc-----------
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE----------- 344 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~----h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~----------- 344 (474)
..|..+... .++.||.=++..+.--+++.- .+..+..+..||+|++||-.++.+|.|=.+- +.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 434444444 347888878774433333332 2446788999999999999999999998873 42
Q ss_pred -EEEEeccCCCCc-CCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCe--EEEEecCCCCCCCCc
Q 011970 345 -LVTSFEDHLLWH-PDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKINATNCSPKVD 417 (474)
Q Consensus 345 -ll~tl~gH~~~~-~~~~v~svafSpDg---~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~--cl~tl~gH~~~~~~~ 417 (474)
..+++.=....+ +...|..+-|+|-| ..|+.=.. |++||+||+.... .. +|+-... .
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts-----------D~~Ir~yDl~~s~~~P~-~L~k~~~---~- 172 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE-----------DDTITMFDILNSQEKPI-VLNKPNN---S- 172 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET-----------TSCEEEEETTCTTSCCE-EESCCCS---E-
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec-----------CCEEEEEEcccCCCCCc-chhcccc---c-
Confidence 122332110000 11237889999954 35555443 9999999997522 22 4432110 0
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc--CCCcEE
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVH 470 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs--~DgtVk 470 (474)
-.+.+ -...|.+++|+++|=+||-.+ +.|-|.
T Consensus 173 -----------------fg~d~----~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 173 -----------------FGLDA----RVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp -----------------EESCS----SCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred -----------------cCCCc----ccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 00000 013899999999999999855 878764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.21 E-value=11 Score=43.95 Aligned_cols=226 Identities=10% Similarity=0.030 Sum_probs=127.0
Q ss_pred CCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeec----CCC-c-----------------------
Q 011970 106 HSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYA----SDN-F----------------------- 155 (474)
Q Consensus 106 ~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~----s~d-~----------------------- 155 (474)
.++++++..+++-+ .++++.- .+.++.++|+|+.++++.+.... .++ .
T Consensus 713 ~~~~LrI~~i~~~~~~~~~~ipL--~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1158)
T 3ei3_A 713 NNSTLTIGTIDEIQKLHIRTVPL--YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS 790 (1158)
T ss_dssp CSSCEEEEEECCSSSEEEEEEEC--SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred cCCceEEEEecccCCeeEEEEeC--CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence 35568887765322 3344443 46789999999998765543211 000 0
Q ss_pred ----------c-ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEee
Q 011970 156 ----------S-SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFD 214 (474)
Q Consensus 156 ----------s-~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWd 214 (474)
- ...-..++|-|-.+.+....+.|-+.|....+..|.|......+|+-|. ..|-|.+++
T Consensus 791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~ 870 (1158)
T 3ei3_A 791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQ 870 (1158)
T ss_dssp ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEE
T ss_pred ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEE
Confidence 0 0112345555545555433222222232333345677533346777665 246788998
Q ss_pred cCCCeEEEEEc----CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEE
Q 011970 215 LKNYTMLYSIS----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 215 l~tg~~l~tl~----~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
+.++++ .-++ .+.|.+++==.| +|+++. -++|+||++...+.|+ .+ .+-..+..+... ..++++++|
T Consensus 871 v~~~kL-~lv~~~~v~g~v~al~~~~g-~Lla~i----g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~-~~~~~I~vg 942 (1158)
T 3ei3_A 871 YSDGKL-QTVAEKEVKGAVYSMVEFNG-KLLASI----NSTVRLYEWTTEKELR-TECNHYNNIMALYLK-TKGDFILVG 942 (1158)
T ss_dssp EETTEE-EEEEEEEESSCEEEEEEETT-EEEEEE----TTEEEEEEECTTSCEE-EEEEECCCSCEEEEE-EETTEEEEE
T ss_pred EECCEE-EEEEEEEcCCcCEEEeeeCC-EEEEEc----CCEEEEEECCCCceEE-EEeeccccEEEEEEe-ccCCEEEEE
Confidence 875543 3332 456777663334 666553 2689999998766555 22 111122222221 237888888
Q ss_pred eCCCcEEE--EECCCCceEEeccc-cCCceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 290 QENENLQI--LDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 290 ~~D~tIkI--WDv~tg~~~~~l~~-h~~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
-.-+.|.+ |+...+++...-+. +..+++++.|..++..+++-.++.|.+...
T Consensus 943 D~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 943 DLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp ESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEE
T ss_pred EhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEec
Confidence 65555554 56666666665433 567899999998876555444888888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=1.3 Score=42.63 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=66.2
Q ss_pred CCceEEEEEcCCCcEEEEEcCCcEEEEeCCC-c--E-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 313 FMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-E--L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~tIklWd~~G-~--l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
...+..++|+|+|.|.+. +++ +||-.+. . . ..+--|...|.- -..++|-|+|.+.++ +
T Consensus 40 w~~~~~laf~P~G~LYaV-~~G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~---F~a~~fD~~G~LYav-~------- 105 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV-LND--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQ---FQFLFFDPNGYLYAV-S------- 105 (236)
T ss_dssp CTTCSEEEECTTSCEEEE-ETT--EEEEESCCCSTTCCHHHHCEEEECSCGGG---CSEEEECTTSCEEEE-E-------
T ss_pred cccceeEEECCCccEEEE-eCC--eEEEECCCCCCcccccccccEeccccccc---ceEEEECCCCCEEEe-C-------
Confidence 456779999999999988 766 4666531 1 0 122333344431 368999999999998 3
Q ss_pred cccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccc-c-ccccCEEEEEEcCCCCEEEE
Q 011970 385 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV-G-EALEDITSLFYDEERNEIYT 462 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~V~slafSpDg~~LaS 462 (474)
||.|.-|+-.+. ++. .|...++. . ...+.+..|+|+|||.+-|-
T Consensus 106 -----dG~iyr~~pP~~-------~~~----------------------~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 106 -----KDKLYKASPPQS-------DTD----------------------NWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp -----TTEEEEESCCCS-------TTC----------------------CHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred -----CCEEEEeCCCcC-------CCC----------------------ceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 788866664321 111 12221111 1 23348899999999986555
Q ss_pred EcCCCcE
Q 011970 463 GNRHGLV 469 (474)
Q Consensus 463 gs~DgtV 469 (474)
. |+.+
T Consensus 152 ~--dg~l 156 (236)
T 1tl2_A 152 H--GQQF 156 (236)
T ss_dssp E--TTEE
T ss_pred e--CCcE
Confidence 5 7765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.76 E-value=2.8 Score=41.09 Aligned_cols=110 Identities=9% Similarity=0.034 Sum_probs=63.5
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCceEEeccccCCceEEEEEcCC
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 324 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd 324 (474)
...|+..++..++ ...+... . ...|+ +++++|.-.. .+..|..-++...+..++ ..+.. .+|+|+
T Consensus 87 ~~~Iy~i~~dg~~-~~~l~~~--~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l-t~~~~----~~~~~~ 155 (302)
T 3s25_A 87 RNSLCRIKRNGHG-STVLDPD--P--CIYAS-LIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI-KNHYL----FTCNTS 155 (302)
T ss_dssp SEEEEEEETTSCC-CEEEECS--C--EEEEE-EETTEEEEEEESSSSCEEEEEEETTSCCCEEE-ESSCC----CCSEEE
T ss_pred CCeEEEEeCCCCc-ceEeecC--C--ccEEE-EeCCEEEEEeecCCCCceEEEEECCCCCeEEE-eCCCc----eEeeEE
Confidence 3568888887664 3333321 1 12444 4678888764 345555567665554433 33322 356888
Q ss_pred CcEEEEEc--CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 325 NQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 325 g~llaS~s--D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
|+.|.=.+ ..+|.+-+++|.-.+.+.... ....+.|+|++|+-..
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~--------~~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYDCN--------CYKPVVLDDTNVYYMD 202 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEECSC--------EEEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeCCC--------ccceeeecCCEEEEEE
Confidence 88777444 568888888765544443221 1245679999998644
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.57 E-value=4.9 Score=37.75 Aligned_cols=195 Identities=10% Similarity=0.059 Sum_probs=98.3
Q ss_pred CCeEEEEecCC-----CcEEEeecCCCe---E--EEEEcCC-cEEEEEEcCCceEEEEecCCC--CccEEEEecCCCeEE
Q 011970 197 NGKVLTYSAQD-----SIYKVFDLKNYT---M--LYSISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVL 263 (474)
Q Consensus 197 nGk~LaS~s~D-----~tiKlWdl~tg~---~--l~tl~~~-~V~~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~~L 263 (474)
++++++.|+.+ ..+-++|+.+.+ - +..++.. .-.+++...+.+++.++..+. ...+.++|+.+++-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 68888888865 468888988765 2 2222211 111222223444444322211 235888999887654
Q ss_pred EEEeecCcce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C---
Q 011970 264 KVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N--- 333 (474)
Q Consensus 264 ~tl~~h~~~v-~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D--- 333 (474)
..-.-...+. ..+... ++..++.|+.+ ..+.++|+.+.+-.+...-........+...++++++.|. +
T Consensus 142 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA 219 (301)
T ss_dssp EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc
Confidence 3221111111 222222 34444446543 5688999999876654211111111112234788888876 4
Q ss_pred --CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 334 --RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 334 --~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
..|.++|.....-..+..-.. +.+....+. -++++++.|+..+. ..-..|-++|+.+++-
T Consensus 220 ~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 220 HLSSVEAYNIRTDSWTTVTSMTT--PRCYVGATV--LRGRLYAIAGYDGN------SLLSSIECYDPIIDSW 281 (301)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS--CCBSCEEEE--ETTEEEEECCBCSS------SBEEEEEEEETTTTEE
T ss_pred ccceEEEEeCCCCcEEECCCCCC--cccceeEEE--ECCEEEEEcCcCCC------cccccEEEEcCCCCeE
Confidence 468899986433333332111 111112232 37888887764100 0014678889877654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.30 E-value=9.7 Score=35.76 Aligned_cols=192 Identities=12% Similarity=0.078 Sum_probs=99.2
Q ss_pred CCeEEEEecCC-----CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCceEEEEecCCCC--ccEEEEecCCCeEEEEE
Q 011970 197 NGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSSH--VPLKILSIEDGTVLKVF 266 (474)
Q Consensus 197 nGk~LaS~s~D-----~tiKlWdl~tg~~l--~tl~~~-~V~~vafSpg~~la~~s~~s~D--~tIkLWdi~tG~~L~tl 266 (474)
++++++.|+.+ ..+-++|+.+.+-. ..++.. .-.+++.-.+.+++.++..... ..+.++|+++.+-...-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 68888888855 35778888877622 222211 1112222245555555432211 35788899887654321
Q ss_pred eecCcce-eEEEEEecCCCeEEE-EeC-------CCcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEEEc-C-
Q 011970 267 YHLLHRN-KKVDFIEQFNEKLLV-KQE-------NENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N- 333 (474)
Q Consensus 267 ~~h~~~v-~~V~F~~~~~~~ll~-~~~-------D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS~s-D- 333 (474)
.-...+. ..+... +++|.+ |+. -..+.++|+.+.+-.+.. ...-....++ ..++++++.|+ +
T Consensus 141 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 141 PMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDG 215 (302)
T ss_dssp CCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSS
T ss_pred CCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCC
Confidence 1111111 222322 344444 543 245889999998766542 1111111222 34788888876 4
Q ss_pred ----CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 334 ----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 334 ----~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
..+.++|.+...-..+....... . ..-+..-++++++.|+..+. ..-..|.++|+.+.+-
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r--~--~~~~~~~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCR--R--NAGVCAVNGLLYVVGGDDGS------CNLASVEYYNPTTDKW 279 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCC--B--SCEEEEETTEEEEECCBCSS------SBCCCEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCcc--c--cCeEEEECCEEEEECCcCCC------cccccEEEEcCCCCeE
Confidence 36888998644444443222111 1 11122237888887764110 0124688999887754
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.19 E-value=5.1 Score=42.04 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=81.5
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCC---CeEEEE---EcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe----
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYS---ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---- 261 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~t---g~~l~t---l~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~---- 261 (474)
|...||.-|..+ +++.||.=++.. |+.+.. +.-..|..+.+|| |..||+.+ +.+|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCC
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccccCc
Confidence 333577766654 578999888763 333332 1123678899998 55555542 5688888777442
Q ss_pred --------EEEEEee------cCcceeEEEEEec--CCCeEEEEeCCCcEEEEECCCCc--eEEeccc---------cCC
Q 011970 262 --------VLKVFYH------LLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAE--LMEVSRT---------EFM 314 (474)
Q Consensus 262 --------~L~tl~~------h~~~v~~V~F~~~--~~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~---------h~~ 314 (474)
..+++.- ....|.+|-|+|- .+..|++=-.|++||+||+.... .. ++.. ..+
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 1234441 1356899999853 24577777899999999998632 22 3321 226
Q ss_pred ceEEEEEcCCCcEE
Q 011970 315 TPSAFIFLYENQLF 328 (474)
Q Consensus 315 ~v~sv~Fspdg~ll 328 (474)
.|.+++|.++|=.|
T Consensus 181 ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 181 DITDLEFSKDGLTL 194 (452)
T ss_dssp CEEEEEECTTSSCE
T ss_pred eEEEEEEcCCCcEE
Confidence 67788888766433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.08 E-value=10 Score=35.61 Aligned_cols=196 Identities=11% Similarity=0.015 Sum_probs=94.0
Q ss_pred CCeEEEEecCC----CcEEEeecCCCeEEE--EEcCCc-EEEEEEcCCceEEEEecCCC--CccEEEEecCCCeEEEEEe
Q 011970 197 NGKVLTYSAQD----SIYKVFDLKNYTMLY--SISDKH-VQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 197 nGk~LaS~s~D----~tiKlWdl~tg~~l~--tl~~~~-V~~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~~L~tl~ 267 (474)
++++++.|+.+ ..+..+|+.+.+-.. .++... -.+++...+.+++.++.... -..+.++|+.+.+-...-.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 35666666643 357778887765221 122111 11222224444444322111 1358889998876433211
Q ss_pred ecCcce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C-------
Q 011970 268 HLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N------- 333 (474)
Q Consensus 268 ~h~~~v-~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D------- 333 (474)
-...+. ..+... ++..++.|+.+ ..+.++|+.+.+-.+...-....-...+...++++++-|+ +
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence 111111 222222 34444556644 3577899998876654211111111111224788888775 3
Q ss_pred CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 334 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 334 ~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
..+.++|...+.-..+..-... ......+. -++++++.|+..+. ..-..+.++|+.+++-.
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTR--RSGAGVGV--LNNLLYAVGGHDGP------LVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSC--CBSCEEEE--ETTEEEEECCBSSS------SBCCCEEEEETTTTEEE
T ss_pred cEEEEEeCCCCcEEECCCCccc--cccccEEE--ECCEEEEECCCCCC------cccceEEEEeCCCCCEe
Confidence 2478888853333333211111 11111222 37888888764110 01246889998877543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=91.05 E-value=12 Score=36.46 Aligned_cols=193 Identities=8% Similarity=0.040 Sum_probs=102.9
Q ss_pred EEEEeeCCCEEEEEEeecCCC--ccc--eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec--CC
Q 011970 134 SLFYNKNNDSLITVSVYASDN--FSS--LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--QD 207 (474)
Q Consensus 134 sv~fspdg~~Lis~S~~~s~d--~s~--Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s--~D 207 (474)
+-.++|+|+.|.-++.....+ .+- ..-..++..++..++. .+.... . ..+|+ ++|+.|+... .+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~----~~l~~~-~----~~~~s-~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS----TVLDPD-P----CIYAS-LIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC----EEEECS-C----EEEEE-EETTEEEEEEESSS
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc----eEeecC-C----ccEEE-EeCCEEEEEeecCC
Confidence 457799999998875322100 000 0013444444443332 122221 1 23677 6888888776 34
Q ss_pred CcEEEeecC-CCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCe
Q 011970 208 SIYKVFDLK-NYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 285 (474)
Q Consensus 208 ~tiKlWdl~-tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ 285 (474)
+.-+|+-+. +|+-...|..+.+ .+|+| |+.|.-.+ . +...|..-++.++.....+++ ... ..+. |+++.
T Consensus 127 ~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~-~-g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~-P~g~~ 197 (302)
T 3s25_A 127 TATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN-P-KNGQLYRYDTASQSEALFYDC---NCY-KPVV-LDDTN 197 (302)
T ss_dssp SCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC-T-TTCCEEEEETTTTEEEEEECS---CEE-EEEE-EETTE
T ss_pred CCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe-C-CCceEEEEECCCCCEEEEeCC---Ccc-ceee-ecCCE
Confidence 444555443 3444455554444 56676 66655442 2 356788889877665444442 222 2344 67888
Q ss_pred EEEEeCC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc---CCcEEEEeCCCcEEEEec
Q 011970 286 LLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 286 ll~~~~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~tIklWd~~G~ll~tl~ 350 (474)
|.-...+ ..|..=++..++. +++.... + -.|+|+|+.|.-++ ...|..=+++|.-.+.+.
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt~~~--~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNP-VVLTEAN--I--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA 262 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCC-EECSCSC--E--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCe-EEEeCCC--c--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence 8876533 3565557766664 3333322 2 23788888876543 346666666776544443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.72 E-value=0.97 Score=51.53 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=33.2
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+.+++.++|..+|++-|. |+++||||+.+|+|+++..
T Consensus 238 ~~~~~~~~~~~~lftl~~-----------D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEET-----------TCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEEC-----------CCEEEEEECCCCCeEeeec
Confidence 567888899999999987 9999999999999999864
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=90.21 E-value=21 Score=37.77 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=109.6
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCC-CeEEEEEeecC--
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLL-- 270 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~-- 270 (474)
.|..++||==+ ..++.|+|+++-+.+++.. .+.|-=-+|-...+|+.-. +..|.-|+++. -.+.+.|.-|.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT----~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC----SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc----CCeeEEecccCCCCchhheecchhc
Confidence 37788888665 6899999999999888765 3334333333345555553 35699999964 36778887542
Q ss_pred cceeEEEEEe-cCCCeEEE-E--e----CCCcEEEEECCCCceEEeccccCCceEEEEEc--CC-CcEEEEEcC----Cc
Q 011970 271 HRNKKVDFIE-QFNEKLLV-K--Q----ENENLQILDVRNAELMEVSRTEFMTPSAFIFL--YE-NQLFLTFRN----RT 335 (474)
Q Consensus 271 ~~v~~V~F~~-~~~~~ll~-~--~----~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs--pd-g~llaS~sD----~t 335 (474)
....=+.+.. ++..-++. | + -.|.++|+.++.+. -+.+.||...--.+.+. +. .++|.-+.. +.
T Consensus 149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k 227 (494)
T 1bpo_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (494)
T ss_dssp TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence 1222333322 33333332 2 2 34788999987654 35567786433222221 11 233333322 45
Q ss_pred EEEEeCC----CcE-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 336 VAVWNFR----GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 336 IklWd~~----G~l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+.|-++. |.. ...+.-......|-. -++.+|+.-.+|.--.+ -|.|-|.|++||.|+..
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP-vamqvs~kygviyviTK-----------~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE-EEEEEETTTTEEEEEET-----------TSEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCccCCCCccceeeeeeCCcccccCce-eEEEecccCCEEEEEec-----------CceEEEEecccceeeee
Confidence 6666652 110 000000000111112 24555665566555555 79999999999999976
Q ss_pred ecCC
Q 011970 407 INAT 410 (474)
Q Consensus 407 l~gH 410 (474)
-+=.
T Consensus 296 nrIs 299 (494)
T 1bpo_A 296 NRIS 299 (494)
T ss_dssp EECC
T ss_pred eccc
Confidence 5433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=89.16 E-value=27 Score=37.62 Aligned_cols=256 Identities=7% Similarity=-0.031 Sum_probs=144.4
Q ss_pred cccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEee---cCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 88 ~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~---g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.+.|.+|... ...|=.|..+|..| || |....... .-....|.+++-.++|...+. . .+ .+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~r-yD---G~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-T----~~-------Gl 84 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFS-YD---GYSTQQHFTYGENNNTRIYCGVIIDNTYLYMG-T----DN-------GI 84 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEE-EC---SSCEEECSCTTSTTSSCEEEEEEETTTEEEEE-E----TT-------EE
T ss_pred cceEEEEEECCCCCEEEEECCCccc-cC---CCceEEEEccCCCCCceEEEEEEcCCCcEEEE-e----CC-------Ce
Confidence 3568888877 44566677889776 44 43332221 112356999998888875543 2 22 34
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE------EcCCcEEEEEEcCC
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS------ISDKHVQEIKISPG 237 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t------l~~~~V~~vafSpg 237 (474)
...|..++++.. + .. .....+..+.. .+|.+.+. +.+ -+-.+|.++++...- +....|.++...++
T Consensus 85 ~~yd~~~~~f~~--~-~~-~~~~~i~~i~~--~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 156 (758)
T 3ott_A 85 LVYNYRADRYEQ--P-ET-DFPTDVRTMAL--QGDTLWLG-ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD 156 (758)
T ss_dssp EEEETTTTEECC--C-SC-CCCSCEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT
T ss_pred EEEeCCCCEEEC--c-cc-CCCceEEEEEe--cCCcEEEE-cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC
Confidence 455655544321 0 00 01123445544 36876664 344 466788877764332 22457999988865
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeec------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
+.|.++.. .-|..+|.++++.. .+... ...+.++... ..++.|.++.. +-|-.+|..+++......-
T Consensus 157 g~lWigt~----~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l 229 (758)
T 3ott_A 157 NQIYVGTY----NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF 229 (758)
T ss_dssp CCEEEEET----TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEeC----CCHhhCccCCCceE-EecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCCeEEeccCC
Confidence 55555532 34777888777643 22211 1125555432 23455666654 4588899888765433211
Q ss_pred cCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCC---CCcCCCCeeEEEECCCCCEEEE
Q 011970 312 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL---LWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~---~~~~~~~v~svafSpDg~~LaS 375 (474)
....|.++...++|.+.+... +-+-++|.....++.+.... ...++-.|++++..++|.+-+.
T Consensus 230 ~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG 295 (758)
T 3ott_A 230 HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG 295 (758)
T ss_dssp EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE
Confidence 234578888888999887654 45777887533333332111 1112234788998888888774
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=88.72 E-value=29 Score=37.39 Aligned_cols=312 Identities=13% Similarity=0.057 Sum_probs=167.3
Q ss_pred cEEEEEeeccEEEEeeCCCeEEeeeccccceeeEe---ecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL---NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 90 ~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l---~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.|..|...+..|-.++.+| +..++.++++....- .+-+...|.+++..++|...|. . .+ .+...
T Consensus 104 ~i~~i~~~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t----~~-------Gl~~~ 170 (758)
T 3ott_A 104 DVRTMALQGDTLWLGALNG-LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-T----YN-------GLCRY 170 (758)
T ss_dssp CEEEEEEETTEEEEEETTE-EEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-E----TT-------EEEEE
T ss_pred eEEEEEecCCcEEEEcCCc-ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-e----CC-------CHhhC
Confidence 4777766655666677775 456787766644331 1223456999999999987663 1 22 22223
Q ss_pred EeccCCCCCccceeeec--cccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEE--EEEcCCcEEEEEEcCCceEE
Q 011970 167 YIRRGKPDSGFALFESE--SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLL 241 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~--~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l--~tl~~~~V~~vafSpg~~la 241 (474)
+...+++.. +.+-... ....+.++..+ .+|. +.+ |... -+-.+|.++++.. ..+....|.++...+++.|.
T Consensus 171 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d-~~~~~lWi-gt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 171 IPSNGKFEG-IPLPVHSSQSNLFVNSLLED-TTRQCVWI-GTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp ETTTTEEEE-ECCCCCTTCSSCCEEEEEEE-TTTTEEEE-EEEE-EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred ccCCCceEE-ecCCCccccccceeEEEEEE-CCCCEEEE-EECC-CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Confidence 333333200 0000000 01124567676 4554 333 3333 4667888877643 23445678899888766666
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeec--------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-c---
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHL--------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-S--- 309 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h--------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l--- 309 (474)
+++. .-+.+++.++++.. .+... ...|.++. +...+.|-+|...| +-+... +...... .
T Consensus 247 igT~----~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~--~D~~g~lWiGT~~G-l~~~~~-~~~~~~~~~~~~ 317 (758)
T 3ott_A 247 AGTD----NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIF--ADQEHNIWLGTDYG-ISLSRY-NSALQFIPISQI 317 (758)
T ss_dssp EEET----TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEE--ECTTCCEEEEESSS-EEEECC-CC-CEEEEHHHH
T ss_pred EEeC----CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEE--EcCCCCEEEEeCCc-cccccc-CCceeEEecccC
Confidence 6542 34788888776543 33211 12355554 23356677776666 544432 2221111 0
Q ss_pred --cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-Cc--EEEEecc-C-CCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 310 --RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE--LVTSFED-H-LLWHPDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 310 --~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~--ll~tl~g-H-~~~~~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
......|.++.-..+|.+.+...+| +-.++.. ++ -...+.. . ......-.|.+++-.++|++-+..
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt------ 390 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT------ 390 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE------
T ss_pred CCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe------
Confidence 0123468888778889988765455 4455543 32 1222221 0 011111237889888999987743
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 011970 383 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 462 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS 462 (474)
++-|..+|..+++...-...... . .. ....|.++..+++|+..+.
T Consensus 391 -------~~GL~~~~~~~~~~~~~~~~~~~--~-~~-------------------------~~~~v~~i~~d~~g~lWig 435 (758)
T 3ott_A 391 -------DGSINRYDYATRQFIHYNIVDNT--G-TY-------------------------NTNWTYYIFEDTAGQLWIS 435 (758)
T ss_dssp -------TTEEEEEETTTTEEEEEEEECCC-----C-------------------------BSSSEEEEEECTTSEEEEE
T ss_pred -------CCcHhhcCcCCCcEEEeecCCCc--C-CC-------------------------CCceEEEEEEcCCCCEEEE
Confidence 45688999888876432211110 0 00 0127899999999987664
Q ss_pred EcCCCcE
Q 011970 463 GNRHGLV 469 (474)
Q Consensus 463 gs~DgtV 469 (474)
....|..
T Consensus 436 T~~~Gl~ 442 (758)
T 3ott_A 436 TCLGGIF 442 (758)
T ss_dssp ESSSCEE
T ss_pred ECCCceE
Confidence 4444544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=16 Score=34.28 Aligned_cols=193 Identities=9% Similarity=0.004 Sum_probs=99.8
Q ss_pred CCeEEEEecCC----CcEEEeecCCCeEE--EEEcCC--cEEEEEEcCCceEEEEecC---CCCccEEEEecCCCeEEEE
Q 011970 197 NGKVLTYSAQD----SIYKVFDLKNYTML--YSISDK--HVQEIKISPGIMLLIFNRS---SSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 197 nGk~LaS~s~D----~tiKlWdl~tg~~l--~tl~~~--~V~~vafSpg~~la~~s~~---s~D~tIkLWdi~tG~~L~t 265 (474)
++++++.|+.+ ..+-++|+.+.+-. ..++.. .-..+.+ .+.+++.++.. .....+.++|+++.+-...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 68898888865 66788898887632 223221 1112222 44444444321 1113588999998765332
Q ss_pred EeecCcce-eEEEEEecCCCeEEE-EeC---------CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 266 FYHLLHRN-KKVDFIEQFNEKLLV-KQE---------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 266 l~~h~~~v-~~V~F~~~~~~~ll~-~~~---------D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
-.-...+. ..+... +++|.+ ++. -..+.++|+.+.+-.+...-........+...++++++-|+ +
T Consensus 134 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 11111111 122222 345544 542 35588999999876655211111111112233788888875 3
Q ss_pred -----CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 334 -----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 334 -----~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
..|.++|...+.-..+..-... ......+.+ ++++++.|+..+. +.-..|.++|+.+.+-
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWK--GVTVKCAAV--GSIVYVLAGFQGV------GRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCC--BSCCEEEEE--TTEEEEEECBCSS------SBCCEEEEEETTTTEE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCC--ccceeEEEE--CCEEEEEeCcCCC------eeeeeEEEEcCCCCeE
Confidence 3678889864433333221111 111122333 7888888764211 1135788999888754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.27 E-value=5.3 Score=40.18 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=65.9
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEcCC---cEEEEE-Ec-C-CceEEEEecCCCCccEEEEecCCCeEEEEEeec-Ccc
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIK-IS-P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHR 272 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~~~---~V~~va-fS-p-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~ 272 (474)
++.-++.||.+.-.|.++|+.+.++... .+.... .. + ++.+++..+ ..|+.|.-+|.++|.....+.-. .-.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p-~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP-FGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC-STTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE-CCCCEEEEEECCCCcEEeeecccccee
Confidence 4444667888888888888888877643 111110 00 1 223333321 34788888898888666554410 000
Q ss_pred eeEEEEE------e----cCCCeEEEEeCCCcEEEEECCCCceEEecc
Q 011970 273 NKKVDFI------E----QFNEKLLVKQENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 273 v~~V~F~------~----~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~ 310 (474)
...+.+. . ..++.+.+++.++++--.|+++|+.+..+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 0011110 0 046788899999999999999999987754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.20 E-value=17 Score=34.08 Aligned_cols=194 Identities=7% Similarity=-0.011 Sum_probs=93.7
Q ss_pred CeEEEEecC--CCcEEEeecCCCeEEE--EEcCCc-EEEEEEcCCceEEEEecC-CCCccEEEEecCCCeEEEEEeecCc
Q 011970 198 GKVLTYSAQ--DSIYKVFDLKNYTMLY--SISDKH-VQEIKISPGIMLLIFNRS-SSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 198 Gk~LaS~s~--D~tiKlWdl~tg~~l~--tl~~~~-V~~vafSpg~~la~~s~~-s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
+.+++.|+. ...+.++|..+.+-.. .++... =.+++.-.+.+++.++.. ..-..+.++|+.+++-...-.-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 445555554 3567788887766321 222110 012222244444443221 1124588899998765432221111
Q ss_pred ce-eEEEEEecCCCeEEEEeCC------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C---------C
Q 011970 272 RN-KKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------R 334 (474)
Q Consensus 272 ~v-~~V~F~~~~~~~ll~~~~D------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D---------~ 334 (474)
+. ..+.. .++..++.|+.+ ..+.++|..+.+-.+...-........+...++++++.|. + .
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 11 22222 223444456654 5688999999876554211111111111224788888775 2 3
Q ss_pred cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 335 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 335 tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.+.++|.....-..+....... ..-..+.+ ++++++.|+.... ..-..|.++|+.+++-
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGL------GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCC--BSCEEEEE--TTEEEEECCEETT------EEBCCEEEEETTTTEE
T ss_pred eEEEeCCCCCeEEECCCccchh--hcceEEEE--CCEEEEEeCCCCC------CCCceEEEeeCCCCcE
Confidence 4788898644334443211111 11112222 7788887764111 0124688899877653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=6.2 Score=37.97 Aligned_cols=98 Identities=7% Similarity=-0.073 Sum_probs=59.1
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-------EEecc-ccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 341 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-------~~~l~-~h~~~v~sv~Fspdg~llaS~sD~tIklWd~- 341 (474)
+....++|.| ++.|-+. .++.+.--+..+++. .++-. +..+ -.++.|-|+|.|.++ +|+.|-=|+-
T Consensus 41 ~~~~~laf~P--~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSP--GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECT--TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ccceeEEECC--CccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 3566889885 4445444 566555555545222 11111 1111 367889999999999 8898877775
Q ss_pred -CCcE----EEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 342 -RGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 342 -~G~l----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
++.- -.+.-+...|- .+..|+|.|||.+-|-.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe
Confidence 2321 01222333453 26889999999998864
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.02 E-value=15 Score=38.25 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=66.8
Q ss_pred EEEEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCc---eEEecc-----c----cCCceEEEEEcCC----
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAE---LMEVSR-----T----EFMTPSAFIFLYE---- 324 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~---~~~~l~-----~----h~~~v~sv~Fspd---- 324 (474)
++.++..-+..-+.++|. |++. +|+++...+.|++++..... .+..+. + .......|+|.|+
T Consensus 5 ~v~~va~gL~~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEEEESSEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred EEEEeccCCCCceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 344444333456889987 4553 79999889999999754321 111111 1 1345678999996
Q ss_pred CcEEEEEc-CC------------cEEEEeCC-C----------cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 325 NQLFLTFR-NR------------TVAVWNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 325 g~llaS~s-D~------------tIklWd~~-G----------~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
+.+.++-+ +. .|.-|.++ + +.|.++......|. ...|+|.|||.+.++-+.
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~---g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL---GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC---EEEEEECTTSCEEEEECC
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc---CCcEeECCCCcEEEEeCC
Confidence 78888765 21 23335442 1 23333331122232 478999999999998764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.85 E-value=4.1 Score=44.31 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=65.8
Q ss_pred cEEEEECCC----CceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-------CcE-------EEEeccCC
Q 011970 294 NLQILDVRN----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GEL-------VTSFEDHL 353 (474)
Q Consensus 294 tIkIWDv~t----g~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-------G~l-------l~tl~gH~ 353 (474)
.+++.|.+. +.-+..+..-...+-.+-++|||++++.+. +.||-+.|++ +++ +...+--.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 588999876 332221122233455688999999999887 9999999975 222 33444222
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC----------eEEEEecCCC
Q 011970 354 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----------KCLAKINATN 411 (474)
Q Consensus 354 ~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG----------~cl~tl~gH~ 411 (474)
+ -.-.+|.++|. .-+... -|..|--||+... ..+.++.-|-
T Consensus 379 G------PlHt~Fd~~G~-aYTtlf----------idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 G------PLHTTFDGRGN-AYTTLF----------IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp C------EEEEEECSSSE-EEEEET----------TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred c------ccEEEECCCCc-eEeeee----------ecceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 2 26789999994 444333 3888999999754 4667776654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.85 E-value=26 Score=32.98 Aligned_cols=193 Identities=10% Similarity=-0.017 Sum_probs=98.0
Q ss_pred CCeEEEEecC----C-----CcEEEeecCCCeEEE--EEcC--CcEEEEEEcCCceEEEEecCCC--CccEEEEecCCCe
Q 011970 197 NGKVLTYSAQ----D-----SIYKVFDLKNYTMLY--SISD--KHVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGT 261 (474)
Q Consensus 197 nGk~LaS~s~----D-----~tiKlWdl~tg~~l~--tl~~--~~V~~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~ 261 (474)
++++++.|+. + ..+-++|+.+.+-.. .+.. ..-..+. ..+.+++.++.... ...+..+|+++.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 6788888776 2 357788888766322 2221 1111222 24444444322111 1358889998876
Q ss_pred EEEEEeecCcce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEEc-
Q 011970 262 VLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 262 ~L~tl~~h~~~v-~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~s- 332 (474)
-...-.-...+. ..+... ++..++.|+.+ ..+.++|+.+.+-.+... ..-....++. .++++++-|+
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 224 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGY 224 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCC
Confidence 433211111111 122222 24444446543 568899999887654421 1111112232 3788888876
Q ss_pred C-----CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 333 N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 333 D-----~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+ ..+.++|+..+.-..+..-.. +......+. -++++++-|+.... ..-..|-++|+.+.+-.
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWTFVAPMKH--RRSALGITV--HQGRIYVLGGYDGH------TFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEE--ETTEEEEECCBCSS------CBCCEEEEEETTTTEEE
T ss_pred CCCCccceEEEEeCCCCcEEECCCCCC--CccceEEEE--ECCEEEEEcCcCCC------cccceEEEEcCCCCEEe
Confidence 4 468899986444433332111 111112222 37888887764210 11357889998877643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.21 E-value=28 Score=32.78 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=96.2
Q ss_pred CCCeEEEEecC----CCcEEEeecCCCeEEE--EEcCC-cEEEEEEcCCceEEEEec----C--CCCccEEEEecCCCeE
Q 011970 196 VNGKVLTYSAQ----DSIYKVFDLKNYTMLY--SISDK-HVQEIKISPGIMLLIFNR----S--SSHVPLKILSIEDGTV 262 (474)
Q Consensus 196 ~nGk~LaS~s~----D~tiKlWdl~tg~~l~--tl~~~-~V~~vafSpg~~la~~s~----~--s~D~tIkLWdi~tG~~ 262 (474)
.++++++.|+. -..+.++|+.+.+-.. .++.. .-.+++...+.+++.++. . .....+.++|+.+.+-
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 36777777773 2357888888776322 22211 111222234444444321 0 0013588899988764
Q ss_pred EEEEeecCcce-eEEEEEecCCCeEEEEeCC-----CcEEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEEc-C
Q 011970 263 LKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 263 L~tl~~h~~~v-~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
...-.-...+. ..+... ++..++.|+.+ ..+.++|+.+.+-.+... ..-....++. .++++++-|+ +
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCC
Confidence 33211111111 222222 23444445532 568899999887655421 1111112222 3788888876 4
Q ss_pred -----CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 334 -----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 334 -----~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
..+.++|...+.-..+..-.. +...-..+.+ ++++++.|+..+. ..-..+.++|+.+++-.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~------~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNT--IRSGAGVCVL--HNCIYAAGGYDGQ------DQLNSVERYDVETETWT 244 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEE--TTEEEEECCBCSS------SBCCCEEEEETTTTEEE
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCC--ccccceEEEE--CCEEEEEeCCCCC------CccceEEEEeCCCCcEE
Confidence 358888886443333332111 1111122333 7888887764110 11356889998877543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.89 E-value=55 Score=35.92 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=96.3
Q ss_pred EEeCCCCeEEEEe-----cCCCcEEEeecCCCeEEE-EEc-C-C--cEEEE-----EEcCCceEEEEe--------cCCC
Q 011970 192 EFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLY-SIS-D-K--HVQEI-----KISPGIMLLIFN--------RSSS 248 (474)
Q Consensus 192 ~Fs~~nGk~LaS~-----s~D~tiKlWdl~tg~~l~-tl~-~-~--~V~~v-----afSpg~~la~~s--------~~s~ 248 (474)
.|+ |||++++.+ |.-.+++++|++|++.+- .+. . + .+..+ ++-++..+..+. ..+.
T Consensus 136 ~~~-~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCF-QNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECS-SSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred ecC-CCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence 376 788877753 345589999999998752 122 0 0 01112 333334443321 0111
Q ss_pred CccEEEEecCCCe--EEEEEeecCcce-eEEEEEecCCCe----EEEE-e---CCCcEEEEECCC--CceEEeccccCCc
Q 011970 249 HVPLKILSIEDGT--VLKVFYHLLHRN-KKVDFIEQFNEK----LLVK-Q---ENENLQILDVRN--AELMEVSRTEFMT 315 (474)
Q Consensus 249 D~tIkLWdi~tG~--~L~tl~~h~~~v-~~V~F~~~~~~~----ll~~-~---~D~tIkIWDv~t--g~~~~~l~~h~~~ 315 (474)
-..|++|.+-|.. -...|++....+ ..+. ...+++. +++. + ....+.+.|... ++..+.......
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAG-KLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEE-ESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEE-EecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-
Confidence 2468899875432 123454332222 1222 2244442 3443 3 224455666553 665554322221
Q ss_pred eEEEEEcCCCcEEEEEc-----------CCcEEEEeCC-Cc-------EEEE-eccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 316 PSAFIFLYENQLFLTFR-----------NRTVAVWNFR-GE-------LVTS-FEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-----------D~tIklWd~~-G~-------ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.++.++++++++... .+.|-+.|+. +. -.++ +..... ..+.++.+++| .++++
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN----EVFNFISTTKD-RVFLA 365 (711)
T ss_dssp --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT----EEEEEEEECSS-CEEEE
T ss_pred --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC----CeEEEEEEECC-EEEEE
Confidence 234566788877432 4456667763 21 1222 332222 23678888876 67777
Q ss_pred EecCCCccccccCCCC--eEEEEeCCCCe
Q 011970 376 YCKAEPEDQWMEGSAG--SINVSSILTGK 402 (474)
Q Consensus 376 ~s~~~~~~~~~~s~Dg--tIklWdi~tG~ 402 (474)
+.. ++ .|.++|+.+|+
T Consensus 366 ~~~-----------~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 366 TYD-----------NVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEE-----------TTEEEEEEECEETTE
T ss_pred EEE-----------CCEEEEEEEECCCCc
Confidence 765 54 46777776775
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.70 E-value=26 Score=39.78 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=29.5
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl 224 (474)
-+++.. ++..+|.+-+.|+++|+|++.+|+|+.+.
T Consensus 239 ~~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 239 ISMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEeec-CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 355565 57778889999999999999999999876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=83.30 E-value=77 Score=38.25 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCC-CeEEEEEeecC--c
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLL--H 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~--~ 271 (474)
|..++||==+ ..++.|+|+.+-+.+++.. ...|-=-+|-...+|+.-+ +..|.-|++++ -.+.+.|.-|. .
T Consensus 75 P~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT----~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 75 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred CCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc----CCeEEEeccCCCCccHHHHhcchhcc
Confidence 6778888665 6899999999877776654 3344333444445555543 35699999963 24555565441 1
Q ss_pred ceeEEEEEe-cCCCeEEE-E------eCCCcEEEEECCCCceEEeccccCCceEEEEEc---CCCcEEEEEcC----CcE
Q 011970 272 RNKKVDFIE-QFNEKLLV-K------QENENLQILDVRNAELMEVSRTEFMTPSAFIFL---YENQLFLTFRN----RTV 336 (474)
Q Consensus 272 ~v~~V~F~~-~~~~~ll~-~------~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs---pdg~llaS~sD----~tI 336 (474)
...=+.+-. ++..-++. | .-.|.++|+.++.+. -+.+.||...--.+.+. +..++|.-+.. +.+
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 111222221 22333332 2 145899999987654 34556776443333331 22334332222 456
Q ss_pred EEEeCC-C-cEEEEeccC-------CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 337 AVWNFR-G-ELVTSFEDH-------LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 337 klWd~~-G-~ll~tl~gH-------~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
.|-++. . .--..|..- .....|-. -++.+|+.-.+|.--.+ -|.|-+.|+.||.|+..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk-----------~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEec-----------CceEEEEecccchhhhh
Confidence 666651 1 000011000 00000111 13444444444444444 79999999999999854
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.36 E-value=17 Score=39.53 Aligned_cols=125 Identities=10% Similarity=0.143 Sum_probs=79.3
Q ss_pred EEEEEecCCCeEEEEe-CCCcEEEEECCC------Cce------EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 275 KVDFIEQFNEKLLVKQ-ENENLQILDVRN------AEL------MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~-~D~tIkIWDv~t------g~~------~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.|.++ |+|.++++++ -+.++-+.|++. +++ +..-..-.-.+.-.+|.++|....|-- |..|--||
T Consensus 327 Gv~vs-PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTS-SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeC-CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 34544 7888888876 899999999884 211 111111224677789999997777777 99999999
Q ss_pred CC-C----------cEEEEeccCCCCcCCCCeeEEEE------CCCCCEEEEEecCCCccccccC--CCCeEEEEeCCCC
Q 011970 341 FR-G----------ELVTSFEDHLLWHPDCNTNNIYI------TSDQDLIISYCKAEPEDQWMEG--SAGSINVSSILTG 401 (474)
Q Consensus 341 ~~-G----------~ll~tl~gH~~~~~~~~v~svaf------SpDg~~LaS~s~~~~~~~~~~s--~DgtIklWdi~tG 401 (474)
+. . ..+..+.-|... --+.- .|||++|+|.++-.+|-=+..| .-.+-.|.|| +|
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~Yqp------GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidI-sG 478 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQP------GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDI-SG 478 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCE------EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEEC-SS
T ss_pred ccHHHHHhcCccCCeeeeccccccCC------cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEec-CC
Confidence 74 3 467777777653 23333 7899999999984332111111 1123467887 56
Q ss_pred eEEEEe
Q 011970 402 KCLAKI 407 (474)
Q Consensus 402 ~cl~tl 407 (474)
.-+.-+
T Consensus 479 dkM~lv 484 (638)
T 3sbq_A 479 DEMKLV 484 (638)
T ss_dssp SSCEEE
T ss_pred CceEEE
Confidence 544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 474 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.89 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.72 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.38 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.22 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.09 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.91 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.68 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.64 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.54 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.22 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.64 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.59 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.55 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.42 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.31 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.26 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.97 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.96 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.18 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.06 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.65 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.58 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.77 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.67 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.51 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.91 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.89 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.02 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.07 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.97 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.62 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.71 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 81.56 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.7e-47 Score=351.01 Aligned_cols=292 Identities=17% Similarity=0.277 Sum_probs=258.6
Q ss_pred EeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceE
Q 011970 111 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF 190 (474)
Q Consensus 111 klW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~ 190 (474)
|.|.. ......+|+| |...|.+|+|+|+|++|||+| .| ++++|||+.+|++... +. .|...+.+
T Consensus 1 k~w~p-~~~~~~~L~G-H~~~I~~l~~sp~~~~l~s~s----~D------g~i~iWd~~~~~~~~~---~~-~h~~~V~~ 64 (317)
T d1vyhc1 1 KEWIP-RPPEKYALSG-HRSPVTRVIFHPVFSVMVSAS----ED------ATIKVWDYETGDFERT---LK-GHTDSVQD 64 (317)
T ss_dssp CCCCC-CSSCSCEEEC-CSSCEEEEEECSSSSEEEEEE----SS------SCEEEEETTTCCCCEE---EC-CCSSCEEE
T ss_pred CccCC-CCCccEEEcC-CCCCeEEEEEcCCCCEEEEEe----CC------CeEEEEECCCCCEEEE---Ee-CCCCcEEE
Confidence 46753 3666788997 888999999999999999976 55 6999999999998553 22 24556779
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
++|+ |+|.+++++..++++.+|+....+....+. ...+..+.|+| +..+++. +.|+.+++||+++|+.+.++.
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~ 140 (317)
T d1vyhc1 65 ISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFT 140 (317)
T ss_dssp EEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE
T ss_pred Eeee-cccccccccccccccccccccccccccccccccccceeeeccCCCceEEee---ccCcceeEeecccceeeeEEc
Confidence 9998 799999999999999999999888776664 46799999997 5666655 458999999999999999999
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC--------------------cE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--------------------QL 327 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg--------------------~l 327 (474)
+|...+..++|. +++..+++++.|++|++||+.+++++..+.+|...+..+.|+|++ .+
T Consensus 141 ~~~~~~~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (317)
T d1vyhc1 141 GHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 219 (317)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred cCCCcceeeecc-cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCce
Confidence 999999999997 667888889999999999999999999999999999999998764 46
Q ss_pred EEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 328 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+++++ |++|++||++ |+++.++.+|... |.+++|+|+|++||+++. ||+|+|||+.++++++
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMK 283 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCE
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCCCCC-----EEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCcEEE
Confidence 88888 9999999995 9999999999987 789999999999999986 9999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+|++|.. .|++|+|+|||+.||||+.||+|+|||
T Consensus 284 ~~~~h~~----------------------------------~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 284 TLNAHEH----------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCSS----------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEcCCCC----------------------------------CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999986 899999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-45 Score=357.30 Aligned_cols=288 Identities=13% Similarity=0.109 Sum_probs=243.8
Q ss_pred ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeC
Q 011970 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDD 195 (474)
Q Consensus 117 tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~ 195 (474)
..+.+++|. |.+.|.+|+|||+|++|||++ ++ .++|||+..++.......+.. +|..+|.+|+|+
T Consensus 41 ~~~~~~~~~--H~~~V~~v~fs~~g~~latg~----dg-------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s- 106 (337)
T d1gxra_ 41 HARQINTLN--HGEVVCAVTISNPTRHVYTGG----KG-------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL- 106 (337)
T ss_dssp EEEEEEEEC--CSSCCCEEEECSSSSEEEEEC----BS-------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-
T ss_pred CceEEEECC--CCCcEEEEEECCCCCEEEEEE----CC-------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-
Confidence 456778883 889999999999999999853 43 799999987765433332222 345678899998
Q ss_pred CCCeEEEEecCCCcEEEeecCCC--eEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg--~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
|||++|++|+.|++|+|||+... ++...+. ...|..++|+|++.++.+. +.|..|++|+++++++...+.+|..
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~~~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC--CSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 79999999999999999998744 4566665 4679999999855444432 4578999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
.+.+++|+ +++..+++++.|++|++||++++++++.+. |...|.+++|+|++++|++++ |+.|++||++ +++. ..
T Consensus 185 ~v~~l~~s-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~ 261 (337)
T d1gxra_ 185 GASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL 261 (337)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE
T ss_pred cccccccc-ccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cc
Confidence 99999997 667888889999999999999999988754 778999999999999999998 9999999996 6654 56
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
..|... |++++|+|||++|++++. |++|+|||+.+|+++.++. |..
T Consensus 262 ~~~~~~-----i~~v~~s~~g~~l~s~s~-----------Dg~i~iwd~~~~~~~~~~~-~~~----------------- 307 (337)
T d1gxra_ 262 HLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSK-ESS----------------- 307 (337)
T ss_dssp CCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CSS-----------------
T ss_pred cccccc-----cceEEECCCCCEEEEEeC-----------CCeEEEEECCCCCEEEEcc-CCC-----------------
Confidence 678776 799999999999999987 9999999999999999876 443
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++++|||||++||||+.||+|+|||.
T Consensus 308 -----------------~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 308 -----------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -----------------CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8999999999999999999999999984
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-44 Score=352.63 Aligned_cols=305 Identities=15% Similarity=0.213 Sum_probs=249.4
Q ss_pred EEeeCCCeEEeeecccccee-----eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 102 FALAHSGVCAAFSRETNRRI-----CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 102 as~s~dgtiklW~~~tg~~l-----~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
+....++.+.+|+....+.+ .++ + |.+.|.+|+|||||++||++ +| .+++||++.+|++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-H~~~V~~l~fs~dg~~lasg----~d-------~~i~iW~~~~~~~~~~ 98 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSL-D-HTSVVCCVKFSNDGEYLATG----CN-------KTTQVYRVSDGSLVAR 98 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEE-E-CSSCCCEEEECTTSSEEEEE----CB-------SCEEEEETTTCCEEEE
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeC-C-CCCcEEEEEECCCCCEEEEE----eC-------CeEEEEEecccceEee
Confidence 45677889999997655432 333 2 88999999999999999884 34 4899999999886332
Q ss_pred ccee--------------eeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-Cce
Q 011970 177 FALF--------------ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIM 239 (474)
Q Consensus 177 ~~lf--------------~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~ 239 (474)
+... ...+...|.+|+|+ |||++|++|+.|++|++||..+++++..+. ...|..++++| +..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 177 (388)
T d1erja_ 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177 (388)
T ss_dssp ECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ecccccccccccccccccccCCCCCEEEEEEC-CCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence 1100 01233457789998 799999999999999999999999988886 46899999997 455
Q ss_pred EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-------ccc
Q 011970 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTE 312 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-------~~h 312 (474)
++++ +.++.|++||++++.++....++ .....+.|.++++..|++++.|++|++||+++++.+..+ .+|
T Consensus 178 ~~~~---~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h 253 (388)
T d1erja_ 178 LVSG---SGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 253 (388)
T ss_dssp EEEE---ETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred cccc---ccceeeeeeeccccccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence 5554 44789999999999998888765 445677777777788888999999999999999877653 468
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc------------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
...|.+++|+|++++|++++ |++|++||+. ++ +...+..|... |.+++|+|||++|++|+.
T Consensus 254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~sg~~ 328 (388)
T d1erja_ 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK 328 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET
T ss_pred CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce-----EEEEEECCCCCEEEEEeC
Confidence 89999999999999999999 9999999974 33 45566777776 789999999999999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE------
Q 011970 379 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF------ 452 (474)
Q Consensus 379 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla------ 452 (474)
||+|+|||+.+|+++.+|++|.+ .|++++
T Consensus 329 -----------dg~i~vwd~~~~~~~~~l~~H~~----------------------------------~V~~~~~~~~~~ 363 (388)
T d1erja_ 329 -----------DRGVLFWDKKSGNPLLMLQGHRN----------------------------------SVISVAVANGSS 363 (388)
T ss_dssp -----------TSEEEEEETTTCCEEEEEECCSS----------------------------------CEEEEEECSSCT
T ss_pred -----------CCEEEEEECCCCcEEEEEeCCCC----------------------------------CEEEEEEecCcc
Confidence 99999999999999999999986 788886
Q ss_pred EcCCCCEEEEEcCCCcEEEccC
Q 011970 453 YDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 453 fSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+|||++||||+.||+|+||+.
T Consensus 364 ~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 364 LGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp TCTTCEEEEEEETTSEEEEEEE
T ss_pred cCCCCCEEEEEeCCCEEEEEee
Confidence 5789999999999999999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-44 Score=339.69 Aligned_cols=310 Identities=14% Similarity=0.129 Sum_probs=241.9
Q ss_pred ccccE-EEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 87 KRTKV-IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 87 ~~~~V-~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
|...| ..+.+.+++||+|+.||+|++||..+++++++|.+ |...|++|+|+|++ .|+++| .| +++++
T Consensus 11 H~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~-~l~s~s----~D------~~i~i 78 (355)
T d1nexb2 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGS----TD------RTVRV 78 (355)
T ss_dssp CSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTT-EEEEEE----TT------CCEEE
T ss_pred cCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCC-EEEEEe----cc------ccccc
Confidence 44444 34556699999999999999999999999999997 88999999999965 788866 55 69999
Q ss_pred eEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--------------------
Q 011970 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------------------- 225 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------------------- 225 (474)
|++..+++..... ............++ ++++.|++++.|++|++||+.++.++....
T Consensus 79 w~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 79 WDIKKGCCTHVFE--GHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp EETTTTEEEEEEC--CCSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred ccccccccccccc--cccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 9988777532111 11111122245676 799999999999999999998876543321
Q ss_pred -----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEE
Q 011970 226 -----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 299 (474)
Q Consensus 226 -----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWD 299 (474)
...|. .+.+ +..++++ ..|..|++||+.+++.+.++.++...+..+.|+ +.+..+++++.|++|+|||
T Consensus 156 ~~~~~~~~v~--~~~~~~~~~~~~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d 229 (355)
T d1nexb2 156 VLRGHMASVR--TVSGHGNIVVSG---SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWD 229 (355)
T ss_dssp EEECCSSCEE--EEEEETTEEEEE---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEE
T ss_pred eeeecccccc--ccccccceeeee---cccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeee
Confidence 01122 2233 4555555 447899999999999999999888889999997 5688888899999999999
Q ss_pred CCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 300 VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 300 v~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
+++++++..+.+|...|.+++|+| ++|++++ |++|++||++ ++.. +..|...+ +...+|+|++++|++|+
T Consensus 230 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~g~ 301 (355)
T d1nexb2 230 LENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNL----SAITTFYVSDNILVSGS 301 (355)
T ss_dssp TTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTC----CCCCEEEECSSEEEEEE
T ss_pred cccccccccccccccccccccccc--ceeeeeeccccccccccccccee--cccccCCc----eEEEEEcCCCCEEEEEe
Confidence 999999999999999999998874 6899998 9999999995 6544 45565543 23357899999999875
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEE-EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 456 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD 456 (474)
|++|+|||+.+|+++. .+.+|.. .|++|+|+|+
T Consensus 302 ------------d~~i~vwd~~tg~~~~~~~~~~~~----------------------------------~V~~v~~~~~ 335 (355)
T d1nexb2 302 ------------ENQFNIYNLRSGKLVHANILKDAD----------------------------------QIWSVNFKGK 335 (355)
T ss_dssp ------------TTEEEEEETTTCCBCCSCTTTTCS----------------------------------EEEEEEEETT
T ss_pred ------------CCEEEEEECCCCCEEEEEecCCCC----------------------------------CEEEEEEcCC
Confidence 8999999999999995 5778875 8999999998
Q ss_pred CCEEEEEcCCCcEEEc
Q 011970 457 RNEIYTGNRHGLVHVW 472 (474)
Q Consensus 457 g~~LaSgs~DgtVklW 472 (474)
..|++++.||+++||
T Consensus 336 -~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 336 -TLVAAVEKDGQSFLE 350 (355)
T ss_dssp -EEEEEEESSSCEEEE
T ss_pred -eEEEEEECCCcEEEE
Confidence 478899999997766
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-43 Score=332.69 Aligned_cols=287 Identities=12% Similarity=0.170 Sum_probs=241.3
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+..++|.| |.+.|++|+|+|+|++|||+| .| ++++|||+.+|++... +. .+...+.+|+|+ |+|
T Consensus 46 ~~~~tL~G-H~~~I~~l~~s~~~~~l~sgs----~D------g~v~iWd~~~~~~~~~---~~-~~~~~v~~v~~~-~~~ 109 (340)
T d1tbga_ 46 RTRRTLRG-HLAKIYAMHWGTDSRLLVSAS----QD------GKLIIWDSYTTNKVHA---IP-LRSSWVMTCAYA-PSG 109 (340)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------TEEEEEETTTTEEEEE---EE-CSCSCEEEEEEC-TTS
T ss_pred eeeEEECC-CCCCEEEEEECCCCCEEEEEE----CC------CceeeeecccceeEEE---Ee-cccccEEeeEee-ccc
Confidence 45578997 889999999999999999976 55 6999999999987442 22 234567799998 799
Q ss_pred eEEEEecCCCcEEEeecCCCe----EEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 199 KVLTYSAQDSIYKVFDLKNYT----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~----~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
++|++|+.|+++++|+..... ....+.. .........++..++.. ..|.+.+.|+..+.........+...
T Consensus 110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (340)
T d1tbga_ 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEE---ETTTEEEEEETTTTEEEEEEECCSSC
T ss_pred eeeeeecccceeecccccccccccccceecccccccccccccccccccccc---ccccccccccccccccccccccccee
Confidence 999999999999999976543 4445543 34445555566666655 34788999999888888877777777
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 350 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~ 350 (474)
+....+. +.+..+++++.|++|++||+++++++.++.+|...|.+++|+|++++|++++ |++|++||++ ++.+.++.
T Consensus 187 ~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 265 (340)
T d1tbga_ 187 VMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred Eeeeccc-cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence 7777765 5677888889999999999999999999999999999999999999999999 9999999996 78877775
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
.+... ..|.+++|+|+|++|++|+. ||+|+|||+.+|+++.++.+|..
T Consensus 266 ~~~~~---~~i~~~~~s~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~H~~------------------ 313 (340)
T d1tbga_ 266 HDNII---CGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN------------------ 313 (340)
T ss_dssp CTTCC---SCEEEEEECSSSCEEEEEET-----------TSCEEEEETTTCCEEEEECCCSS------------------
T ss_pred ccccc---CceEEEEECCCCCEEEEEEC-----------CCEEEEEECCCCcEEEEEcCCCC------------------
Confidence 44332 23789999999999999987 99999999999999999999986
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|+|+|||++|||||.||+|+|||
T Consensus 314 ----------------~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 314 ----------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----------------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 899999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-43 Score=327.59 Aligned_cols=308 Identities=12% Similarity=0.126 Sum_probs=241.9
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
.+.|++|||++.||+|++||+.+|+++++|.+ |...|.+++|+|+ .|+++| .| +++++|++...+..
T Consensus 24 ~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~--~l~s~s----~D------~~~~~~~~~~~~~~ 90 (342)
T d2ovrb2 24 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDN--IIISGS----TD------RTLKVWNAETGECI 90 (342)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETT--EEEEEE----TT------SCEEEEETTTTEEE
T ss_pred EECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCC--ccccce----ec------ccccccccccccce
Confidence 34499999999999999999999999999997 7889999999985 888876 45 68899997665541
Q ss_pred CccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEEEEcCCceEEEEecCCCCccEE
Q 011970 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
. ........+....+ .++.++.+..|+++.+||..+++....+... ............++++ +.|++|+
T Consensus 91 ~----~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~ 160 (342)
T d2ovrb2 91 H----TLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG---AYDFMVK 160 (342)
T ss_dssp E----EECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE---ETTSCEE
T ss_pred e----cccccceeEeeeec---ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee---cCCCeEE
Confidence 1 11111222223333 3567888899999999999999988887643 2333333345666665 4478999
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
+||++.++++.++.+|...+..+. +++..+++++.|++|+|||++++++++.+.+|...+.+++|++ ++|++++
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~ 235 (342)
T d2ovrb2 161 VWDPETETCLHTLQGHTNRVYSLQ---FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA 235 (342)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEE---ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEET
T ss_pred EeecccceeeEEEcCccccccccc---CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcC
Confidence 999999999999998877666555 4578889999999999999999999999999999998887664 6899998
Q ss_pred CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 333 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 333 D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|++|++||+. ++....+.+|.... ....+++++++++++|+. ||+|+|||+.+|++++++..+.
T Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~s~-----------Dg~i~iwd~~tg~~i~~~~~~~ 300 (342)
T d2ovrb2 236 DSTVKIWDIKTGQCLQTLQGPNKHQ----SAVTCLQFNKNFVITSSD-----------DGTVKLWDLKTGEFIRNLVTLE 300 (342)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCS----SCEEEEEECSSEEEEEET-----------TSEEEEEETTTCCEEEEEEECT
T ss_pred CCEEEEEecccccccccccccceee----eceeecccCCCeeEEEcC-----------CCEEEEEECCCCCEEEEEeccc
Confidence 9999999995 88888888766532 123445557789999986 9999999999999999986432
Q ss_pred CCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc----EEEccC
Q 011970 412 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 474 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt----VklWd~ 474 (474)
.. .+-..|++|+|+|||..||+|+.||+ |++||.
T Consensus 301 ~~-----------------------------~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 301 SG-----------------------------GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp TG-----------------------------GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CC-----------------------------CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 10 00017999999999999999999997 999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-43 Score=327.40 Aligned_cols=276 Identities=10% Similarity=0.164 Sum_probs=238.1
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|+.+|.+|.|+ +++||+++.||+|++||+++|+++.++.+ |.+.|++++|+|++..+++++ .+ .++.
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~----~~------~~~~ 84 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS----AD------MTIK 84 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCCC
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccccccccc----cc------cccc
Confidence 77788888887 89999999999999999999999999997 788999999999999998865 33 3555
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLL 241 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la 241 (474)
+|+....+.... +. .+...+..+.|+ |++..|++++.|+++++||+.+++++.++. ...+..++|+| +..++
T Consensus 85 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 85 LWDFQGFECIRT---MH-GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 159 (317)
T ss_dssp EEETTSSCEEEC---CC-CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred cccccccccccc---cc-cccccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEE
Confidence 677665554221 11 233455578997 799999999999999999999999998886 46799999998 45555
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC-------------------CCeEEEEeCCCcEEEEECCC
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------------NEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~-------------------~~~ll~~~~D~tIkIWDv~t 302 (474)
++ +.|++|++|++.+++++..+.+|...+..++|.+.. +..+++++.|++|++||+++
T Consensus 160 ~~---~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 236 (317)
T d1vyhc1 160 SC---SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236 (317)
T ss_dssp EE---ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EE---eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence 54 458999999999999999999999999999986421 23577789999999999999
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~ 380 (474)
++++.++.+|...|.+++|+|+|++|++++ |++|+|||++ ++++.+|.+|... |++++|+|||++||||+.
T Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----V~~~~~s~~~~~l~s~s~-- 309 (317)
T d1vyhc1 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV-- 309 (317)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET--
T ss_pred CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC--
Confidence 999999999999999999999999999998 9999999995 9999999999986 799999999999999987
Q ss_pred CccccccCCCCeEEEEe
Q 011970 381 PEDQWMEGSAGSINVSS 397 (474)
Q Consensus 381 ~~~~~~~s~DgtIklWd 397 (474)
||+|+|||
T Consensus 310 ---------Dg~i~iWd 317 (317)
T d1vyhc1 310 ---------DQTVKVWE 317 (317)
T ss_dssp ---------TSEEEEEC
T ss_pred ---------CCeEEEeC
Confidence 99999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-43 Score=346.07 Aligned_cols=280 Identities=11% Similarity=0.093 Sum_probs=234.5
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+......++++|+|+.||.++ . ..+.+|++.+++... +|. +|...+.+++|+ |||++||+|+.|
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~----~-------~~v~i~~~~~~~~~~---~~~-~H~~~v~~~~~s-p~g~~latg~~d 79 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN----G-------TSVYTVPVGSLTDTE---IYT-EHSHQTTVAKTS-PSGYYCASGDVH 79 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE----T-------TEEEEEETTCSSCCE---EEC-CCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred CCCCeEEEEEcCCCCEEEEEe----C-------CEEEEEECCCCceeE---EEc-CCCCCEEEEEEe-CCCCeEeccccC
Confidence 334566789999999998754 3 468899998887643 454 356778899998 799999999999
Q ss_pred CcEEEeecCCCeEE--EEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 208 SIYKVFDLKNYTML--YSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 208 ~tiKlWdl~tg~~l--~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
++|+|||+.+++++ .++. ...|.+|+|+|+ .++++++ .+.+..++||+++++++++++.+|...|.+|+|+ |+
T Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~-~~ 157 (311)
T d1nr0a1 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG-EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK-PS 157 (311)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE-CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC-SS
T ss_pred ceEeeeeeeccccccccccccccCcccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cc
Confidence 99999999987743 3454 568999999985 4555553 4557789999999999999999999999999997 55
Q ss_pred CCe-EEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec-------cC
Q 011970 283 NEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE-------DH 352 (474)
Q Consensus 283 ~~~-ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~-------gH 352 (474)
++. +++++.|++|+|||+++++++....+|...|.+++|+|++++|++++ |++|++||.. ++.+.+|+ +|
T Consensus 158 ~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h 237 (311)
T d1nr0a1 158 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237 (311)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred ceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence 665 56688999999999999999999999999999999999999999998 9999999995 88888876 46
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 432 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
..+ |.+++|+|||++|++|+. ||+|+|||+.+|+|+++|+.|...+
T Consensus 238 ~~~-----V~~~~~s~~~~~l~tgs~-----------Dg~v~iwd~~t~~~~~~l~~~~~~~------------------ 283 (311)
T d1nr0a1 238 SGS-----VFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGTRIE------------------ 283 (311)
T ss_dssp SSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCSSGG------------------
T ss_pred ccc-----ccccccCCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEECCCCcc------------------
Confidence 665 789999999999999987 9999999999999999999887410
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 433 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 433 ~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+.++.| +++.|++++.||.|++||.
T Consensus 284 -------------~~~~~~~~--~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 284 -------------DQQLGIIW--TKQALVSISANGFINFVNP 310 (311)
T ss_dssp -------------GCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred -------------ceEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence 14444544 5667999999999999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-41 Score=327.39 Aligned_cols=276 Identities=16% Similarity=0.164 Sum_probs=227.6
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeecccccee---eEee-cCCCceEEEEEEeeCCCEEEEEEeecCCCcccee
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI---CFLN-VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l---~~l~-g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk 159 (474)
.|...|..|.|+ |++||+++ ||+|++||+.+++.. ..+. ..|.+.|.+|+|+|||+.|++++ .|
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~----~d----- 118 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----EA----- 118 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----SS-----
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee----cc-----
Confidence 466777777777 89999998 899999999876432 3322 34788999999999999999976 45
Q ss_pred eeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-
Q 011970 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP- 236 (474)
Q Consensus 160 ~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp- 236 (474)
++++||++...+...... +. .+...+..++|+ ||+.+|++++.|++|++||+.++++..... ...|.+++|+|
T Consensus 119 -g~i~iwd~~~~~~~~~~~-~~-~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 194 (337)
T d1gxra_ 119 -STLSIWDLAAPTPRIKAE-LT-SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp -SEEEEEECCCC--EEEEE-EE-CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred -cccccccccccccccccc-cc-cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999987554311111 11 234456678998 799999999999999999999999887775 46899999997
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
+..++++ +.|+.|++||+++|++++++. |...+.+++|. |++..+++++.|+.|++||++++++... ..|...|
T Consensus 195 ~~~~~~~---~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i 268 (337)
T d1gxra_ 195 GTKLWTG---GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCV 268 (337)
T ss_dssp SSEEEEE---ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCE
T ss_pred ccccccc---cccccccccccccceeecccc-cccceEEEEEc-ccccccceeccccccccccccccccccc-ccccccc
Confidence 5555554 447999999999999999886 56789999997 6678888899999999999999988754 6788899
Q ss_pred EEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 317 SAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.+++|+|+|++|+|++ |++|++||.. |+++.++. |... |.+++|+|||++||+|+. ||+|+
T Consensus 269 ~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~-----v~~~~~s~d~~~l~t~s~-----------D~~I~ 331 (337)
T d1gxra_ 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS-----VLSCDISVDDKYIVTGSG-----------DKKAT 331 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-----EEEEEECTTSCEEEEEET-----------TSCEE
T ss_pred ceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCC-----EEEEEEeCCCCEEEEEeC-----------CCeEE
Confidence 9999999999999999 9999999995 99998876 5454 789999999999999987 99999
Q ss_pred EEeC
Q 011970 395 VSSI 398 (474)
Q Consensus 395 lWdi 398 (474)
|||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.6e-40 Score=308.81 Aligned_cols=277 Identities=9% Similarity=0.117 Sum_probs=228.0
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|.+|.|+ +++||+++.||+|++||..+++.+.++.+ |...|.+++|+|+|+.|++++ .| ..++
T Consensus 54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~----~d------~~i~ 122 (340)
T d1tbga_ 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG----LD------NICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEE----TT------CCEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeec----cc------ceee
Confidence 45556666665 89999999999999999999999999997 778999999999999999876 45 6888
Q ss_pred EeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceE
Q 011970 165 IEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIML 240 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~l 240 (474)
+|+......... ..... .+.... ...+. ..+..++....|.+.+.|+..+........ ...|..+.+.| +..+
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 123 IYNLKTREGNVR-VSRELAGHTGYL-SCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEESSSSCSCCC-EEEEECCCSSCE-EEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cccccccccccc-cceecccccccc-ccccc-ccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence 999766554221 11111 122222 23333 345678888899999999988877655443 46788999997 4555
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--cccCCceEE
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSA 318 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~~h~~~v~s 318 (474)
+++ +.|++|++||+++++++.+|.+|...+.+|+|+ |++..|++++.|++|++||+.+.+.+..+ ..|...+.+
T Consensus 200 ~~~---~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 200 VSG---ACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEE---ETTTEEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEe---ecCceEEEEECCCCcEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 554 447999999999999999999999999999997 67888888999999999999999987764 456778999
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
++|+|+|++|++++ |++|+|||+. |+++.+|.+|... |++|+|+|||++|||||. ||+|+||
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~-----V~~l~~s~d~~~l~s~s~-----------Dg~v~iW 339 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIW 339 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEE
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEeCCCCEEEEEcc-----------CCEEEEe
Confidence 99999999999999 9999999994 9999999999987 799999999999999987 9999999
Q ss_pred e
Q 011970 397 S 397 (474)
Q Consensus 397 d 397 (474)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-40 Score=321.78 Aligned_cols=278 Identities=13% Similarity=0.131 Sum_probs=229.4
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeec-----------------CCCceEEEEEEeeCCCEEE
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV-----------------SPDEVIRSLFYNKNNDSLI 145 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g-----------------~~~~~i~sv~fspdg~~Li 145 (474)
+.|.+.|.+|.|+ |++||+|+ |++|++||+.+|+++..+.+ .|...|++|+|+|||++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 4577777888887 89999997 89999999999999988764 2455699999999999999
Q ss_pred EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 146 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 146 s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
+++ .| +++++|+...++.... + .++...+..++|+ +++..+++++.|+.+++||+.+..+.....
T Consensus 138 s~~----~d------g~v~i~~~~~~~~~~~---~-~~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 202 (388)
T d1erja_ 138 TGA----ED------RLIRIWDIENRKIVMI---L-QGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202 (388)
T ss_dssp EEE----TT------SCEEEEETTTTEEEEE---E-CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ecc----cc------cccccccccccccccc---c-ccccccccccccc-cccccccccccceeeeeeeccccccccccc
Confidence 976 45 6899999988886321 1 1245567789998 799999999999999999999998877665
Q ss_pred -CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEe-------ecCcceeEEEEEecCCCeEEEEeCCCcE
Q 011970 226 -DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 226 -~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-------~h~~~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
......++++| +.+|+++ +.|+.|++||+++++.+.++. +|...|.+++|+ |++..|++++.|++|
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~---~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d~~i 278 (388)
T d1erja_ 203 IEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSV 278 (388)
T ss_dssp CSSCEEEEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred cccccccccccCCCCCeEEEE---cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcE
Confidence 45667777875 4556555 457899999999999988774 577889999997 678888889999999
Q ss_pred EEEECCCCc------------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCe
Q 011970 296 QILDVRNAE------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 361 (474)
Q Consensus 296 kIWDv~tg~------------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v 361 (474)
++||+++++ +......|...|.+++|+|+|++|++++ |++|++||++ |+++.+|++|... |
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~-----V 353 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----V 353 (388)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----E
T ss_pred EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC-----E
Confidence 999998764 3445567889999999999999999999 9999999995 9999999999987 5
Q ss_pred eEEE------ECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 362 NNIY------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 362 ~sva------fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+++ |+|||++||||+. ||+|+|||+
T Consensus 354 ~~~~~~~~~~~spd~~~l~s~s~-----------Dg~I~iW~~ 385 (388)
T d1erja_ 354 ISVAVANGSSLGPEYNVFATGSG-----------DCKARIWKY 385 (388)
T ss_dssp EEEEECSSCTTCTTCEEEEEEET-----------TSEEEEEEE
T ss_pred EEEEEecCcccCCCCCEEEEEeC-----------CCEEEEEee
Confidence 6665 5789999999986 999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-40 Score=313.87 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=223.3
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
|+..++++| |...|.+|+|+|||++|||+| .| ++++|||+.+|++... +...|...+.+++|+ ||
T Consensus 2 g~~~~~~~G-H~~~V~~l~~s~dg~~l~s~s----~D------g~v~vWd~~~~~~~~~---~~~~h~~~v~~v~~~-~~ 66 (299)
T d1nr0a2 2 GSIDQVRYG-HNKAITALSSSADGKTLFSAD----AE------GHINSWDISTGISNRV---FPDVHATMITGIKTT-SK 66 (299)
T ss_dssp TEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SCEEEEETTTCCEEEC---SSCSCSSCEEEEEEC-TT
T ss_pred CccceEcCC-CCCCcEEEEECCCCCEEEEEc----CC------CeEEEEECCCCcEEEE---EcCCCCCcEEEEEee-cc
Confidence 778889998 889999999999999999976 55 6899999999997542 322345667799998 79
Q ss_pred CeEEEEecCCCcEEEeecCCCe-----EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~-----~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
|++++ ++.|+++++|++.... ....-....+..++|+|++.+++... ++.+++|+. ++....... +.
T Consensus 67 g~~~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~i~~~~~--~~~~~~~~~--~~ 138 (299)
T d1nr0a2 67 GDLFT-VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC---YKHIAIYSH--GKLTEVPIS--YN 138 (299)
T ss_dssp SCEEE-EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE---SSEEEEEET--TEEEEEECS--SC
T ss_pred ceeec-ccceeeEEEeccCCccccccccccccccccccccccccccccccccc---ccccccccc--ccccccccc--cc
Confidence 98655 5679999999976432 12223356799999998666665532 568999994 455444433 56
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE---
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV--- 346 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll--- 346 (474)
+..++|+ |++..+++++.|+.|++||++++++.+. ...|...|.+++|+|++++|++++ |++|++||+. +..+
T Consensus 139 ~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 139 SSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7888987 6778888899999999999999987654 457889999999999999999998 9999999994 6654
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe--cCCCCCCCCccccCCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI--NATNCSPKVDDELGSSS 424 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl--~gH~~~~~~~~~~~~~~ 424 (474)
..+.+|... |++++|+|||++||+|+. ||+|+|||+.++++...+ .+|..
T Consensus 218 ~~~~~h~~~-----v~~l~~s~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~------------ 269 (299)
T d1nr0a2 218 NSWTFHTAK-----VACVSWSPDNVRLATGSL-----------DNSVIVWNMNKPSDHPIIIKGAHAM------------ 269 (299)
T ss_dssp CCCCCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTCTTSCCEEETTSSTT------------
T ss_pred ccccccccc-----cccccccccccceEEEcC-----------CCEEEEEECCCCCcceEEEecCCCC------------
Confidence 467788876 799999999999999987 999999999887654333 33332
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..|.+++ +|+++.|+||+.|++|||||.
T Consensus 270 ---------------------~~v~~~~-~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 270 ---------------------SSVNSVI-WLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp ---------------------SCEEEEE-EEETTEEEEEETTSCEEEEEC
T ss_pred ---------------------CcEEEEE-ECCCCEEEEEeCCCEEEEEec
Confidence 1576665 567789999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.9e-39 Score=313.22 Aligned_cols=278 Identities=8% Similarity=-0.002 Sum_probs=228.9
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
+|..+..++++ |+.||.++ ++.+.+|++++++....+.+ |.+.|.+++|+|||++||+++ .| ++++
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~----~d------g~i~ 83 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGD----VH------GNVR 83 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEE----TT------SEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEeccc----cC------ceEe
Confidence 34444444444 88988875 66789999999999999987 778999999999999999976 45 6999
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ce
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IM 239 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~ 239 (474)
||++..++...... +. .+...+..|+|+ |+|++|++++. |.+++|||+++++++.++. .+.|.+|+|+|+ ..
T Consensus 84 iwd~~~~~~~~~~~-~~-~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 84 IWDTTQTTHILKTT-IP-VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp EEESSSTTCCEEEE-EE-CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred eeeeeccccccccc-cc-cccCcccccccc-cccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 99998887632211 22 234567799998 79999998885 5679999999999888776 467999999984 43
Q ss_pred -EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-------cc
Q 011970 240 -LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RT 311 (474)
Q Consensus 240 -la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-------~~ 311 (474)
++++ +.|++|++||+++++++.++..|...+..|.|+ |++..+++++.|++|++||+.+++.+..+ .+
T Consensus 161 ~l~sg---s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 236 (311)
T d1nr0a1 161 RIISG---SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 236 (311)
T ss_dssp EEEEE---ETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred eeccc---ccccccccccccccccccccccccccccccccC-cccccccccccccccccccccccccccccccccccccc
Confidence 4443 458999999999999999999999999999997 67888888999999999999999887654 46
Q ss_pred cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 312 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|...|.+++|+|+|++|+|++ |++|+|||++ |+++++|..|.... ...+.+.+++++|++++.
T Consensus 237 h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~----~~~~~~~~~~~~l~s~s~----------- 301 (311)
T d1nr0a1 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGIIWTKQALVSISA----------- 301 (311)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG----GCEEEEEECSSCEEEEET-----------
T ss_pred ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc----ceEEEEEecCCEEEEEEC-----------
Confidence 889999999999999999999 9999999995 99999999886532 234556667788999876
Q ss_pred CCeEEEEeC
Q 011970 390 AGSINVSSI 398 (474)
Q Consensus 390 DgtIklWdi 398 (474)
||.|++||.
T Consensus 302 dG~i~~wd~ 310 (311)
T d1nr0a1 302 NGFINFVNP 310 (311)
T ss_dssp TCCEEEEET
T ss_pred CCEEEEEeC
Confidence 999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-39 Score=320.70 Aligned_cols=313 Identities=13% Similarity=0.054 Sum_probs=227.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
..++|.+++|||||+.||+++ .| +.++||++..+++... ..+. +|...|.+|+|+ |||++|++|+.|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~----~~------~~i~iw~~~~~~~~~~-~~l~-gH~~~V~~l~fs-p~~~~l~s~s~D 72 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICP----NN------HEVHIYEKSGNKWVQV-HELK-EHNGQVTGVDWA-PDSNRIVTCGTD 72 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEEC----SS------SEEEEEEEETTEEEEE-EEEE-CCSSCEEEEEEE-TTTTEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEe----CC------CEEEEEECCCCCEEEE-EEec-CCCCCEEEEEEC-CCCCEEEEEECC
Confidence 457899999999999999854 56 6899999988775221 1222 356678899999 799999999999
Q ss_pred CcEEEeecCCCeEEEE--Ec--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE----EEeecCcceeEEEE
Q 011970 208 SIYKVFDLKNYTMLYS--IS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK----VFYHLLHRNKKVDF 278 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~t--l~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~----tl~~h~~~v~~V~F 278 (474)
++|+|||+.+++.... +. ...|.+++|+| +..|+++ +.|++|++|+++.+.... .+..|...+.+++|
T Consensus 73 ~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~---s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 149 (371)
T d1k8kc_ 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 149 (371)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CeEEEEeecccccccccccccccccccccccccccccceee---cccCcceeeeeecccccccccccccccccccccccc
Confidence 9999999998875444 33 35799999998 5566665 457999999988765433 33467788999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCC------------------ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNA------------------ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg------------------~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
+ |++..|++++.|++|+|||+..+ +++....+|...|.+++|+|+|++|++++ |++|++|
T Consensus 150 ~-p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iw 228 (371)
T d1k8kc_ 150 H-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228 (371)
T ss_dssp C-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred c-ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEE
Confidence 7 67888888999999999998653 45667788999999999999999999999 9999999
Q ss_pred eCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 340 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 340 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|++ ++++.++.+|..+ |.+++|+|||++||+|+ |+.+++|+..++....++.++...+....
T Consensus 229 d~~~~~~~~~~~~~~~~-----v~s~~fs~d~~~la~g~------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
T d1k8kc_ 229 DADKKMAVATLASETLP-----LLAVTFITESSLVAAGH------------DCFPVLFTYDSAAGKLSFGGRLDVPKQSS 291 (371)
T ss_dssp EGGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEET------------TSSCEEEEEETTTTEEEECCCCCCC----
T ss_pred eeecccceeeeeccccc-----ceeeeecCCCCEEEEEc------------CCceEEEEeeCCCceEEEeeeecCccccc
Confidence 995 9999999999887 78999999999999864 77777776555444444555433111110
Q ss_pred ccCCCCCCccccccc--cccccccc-----cccccCEEEEEEcCCCC----EEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNK--SSYIRSTV-----GEALEDITSLFYDEERN----EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~--~~~~~~~~-----~~~l~~V~slafSpDg~----~LaSgs~DgtVklWd~ 474 (474)
.............+. ........ ..+-..|+++++.|++. .|+|++.||+|+|||.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 292 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp ----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 000000000000000 00000000 01334799999988763 5999999999999983
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-39 Score=316.32 Aligned_cols=289 Identities=10% Similarity=0.067 Sum_probs=218.6
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeC-CCCeEEEEecCCCc
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSI 209 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-~nGk~LaS~s~D~t 209 (474)
.+.+++|+|+|+.|+.++ + +. ..++.|+....+.... .-+...+...+.+|+|+| .||++||+|+.|++
T Consensus 19 ~~t~l~~~~~~~~la~~~--~-~~------~~i~~~~~~~~~~~~~-~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPC--G-KS------AFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEE--T-TE------EEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEe--C-CC------EEEEEEeCCCCCccce-EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence 356899999999998764 2 22 3455565444433221 122211234577999984 37899999999999
Q ss_pred EEEeecCCCeEEE----------EEcCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 210 YKVFDLKNYTMLY----------SISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 210 iKlWdl~tg~~l~----------tl~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
|||||+.++++.. ..+...|.+|+|+|++ .|++. ..+.+..+++|+.++|+++.++.+|...+.+++|
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV-GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE-ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee-eccccceEEEEeecccccceeeeecccccccccc
Confidence 9999987654221 1234679999999854 55544 3466889999999999999999999999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEe---ccccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~---l~~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
.+..+..+++++.|++|++||+.+++.... ..+|...|.+++|+|| +++|++++ |++|++||++ ++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~ 247 (325)
T d1pgua1 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 247 (325)
T ss_dssp CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred cccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc
Confidence 854334566789999999999999887654 4567888999999997 68999998 9999999995 9999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 432 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
...+.. .+.++++ |||++|++++. |++|+|||+.+|++++++..|... . .
T Consensus 248 ~~~v~~-~~~s~~~-~dg~~l~s~s~-----------D~~i~iwd~~~~~~~~~~~~~~~~-~--~-------------- 297 (325)
T d1pgua1 248 QEPVQG-GIFALSW-LDSQKFATVGA-----------DATIRVWDVTTSKCVQKWTLDKQQ-L--G-------------- 297 (325)
T ss_dssp TBCCCS-CEEEEEE-SSSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCTTC-G--G--------------
T ss_pred cccccc-ceeeeec-cCCCEEEEEeC-----------CCeEEEEECCCCCEEEEEEecCCc-c--c--------------
Confidence 987532 2233333 79999999886 999999999999999999888740 0 0
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 433 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 433 ~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
....++.+++++ .|+|||.||+|++||+
T Consensus 298 -------------~~~~~~~~~~~~-~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 -------------NQQVGVVATGNG-RIISLSLDGTLNFYEL 325 (325)
T ss_dssp -------------GCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred -------------CeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence 023344444444 7899999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-38 Score=297.53 Aligned_cols=276 Identities=12% Similarity=0.097 Sum_probs=214.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|.+|+|+ +++||+++.||+|++||+++|+++.++...|...|.+++|+|+|+.++ ++ .+ .+++
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~---~d-------~~v~ 79 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VS---WD-------DHLK 79 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EE---TT-------TEEE
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-cc---ce-------eeEE
Confidence 44445555555 899999999999999999999999999877889999999999998554 33 34 4889
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCc-eEEEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIF 243 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~-~la~~ 243 (474)
+|++...+.... ......+...+..++|+ |||++++.++ ++.+++|+. ++.........+..++|+|++ +++++
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 80 VVPAGGSGVDSS-KAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSH--GKLTEVPISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp EECSSSSSSCTT-SCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEET--TEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred EeccCCcccccc-ccccccccccccccccc-cccccccccc-ccccccccc--ccccccccccccccccccccccccccc
Confidence 999765543221 22222234556789998 7999887765 568999994 455555567789999999854 55554
Q ss_pred ecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE---eccccCCceEEE
Q 011970 244 NRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAF 319 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~---~l~~h~~~v~sv 319 (474)
+.|+.|++||++++++... ...|...+..++|+ |++..|++++.|++|++||+.++..+. .+.+|...|.++
T Consensus 155 ---~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 155 ---GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230 (299)
T ss_dssp ---ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred ---cccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 4578999999999887653 34678899999997 577888889999999999999987653 467799999999
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
+|+|+|++|++++ |++|+|||++ ++. +.....|... .|+.+ ++|++++|+|++. |++|||
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~s~s~-----------D~~i~i 294 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS----SVNSV-IWLNETTIVSAGQ-----------DSNIKF 294 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS----CEEEE-EEEETTEEEEEET-----------TSCEEE
T ss_pred cccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC----cEEEE-EECCCCEEEEEeC-----------CCEEEE
Confidence 9999999999999 9999999995 543 4444455443 25555 5577889999876 999999
Q ss_pred EeC
Q 011970 396 SSI 398 (474)
Q Consensus 396 Wdi 398 (474)
||+
T Consensus 295 Wdl 297 (299)
T d1nr0a2 295 WNV 297 (299)
T ss_dssp EEC
T ss_pred Eec
Confidence 997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2e-38 Score=314.08 Aligned_cols=280 Identities=10% Similarity=0.099 Sum_probs=223.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
+..+|..+.|+ +..||+++.||+|++|+..+++ ++..|.+ |...|++|+|+|+|++|||+| .| ++
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s----~D------~~ 74 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG----TD------RN 74 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE----TT------SC
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEE----CC------Ce
Confidence 34567777777 8999999999999999998886 6778887 888999999999999999976 45 68
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE----Ec--CCcEEEEEEcC
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----IS--DKHVQEIKISP 236 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t----l~--~~~V~~vafSp 236 (474)
++||++..++....+.+. .+...+..++|+ |||+.|++++.|++|++|++........ .. ...|.+++|+|
T Consensus 75 i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 151 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVIL--RINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151 (371)
T ss_dssp EEEEEEETTEEEEEEECC--CCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred EEEEeecccccccccccc--cccccccccccc-cccccceeecccCcceeeeeecccccccccccccccccccccccccc
Confidence 999999877653322221 234456789998 7999999999999999999877653322 22 35799999998
Q ss_pred -CceEEEEecCCCCccEEEEecCC------------------CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIED------------------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~t------------------G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+.+||++ +.|++|++||+.. ++++.++.+|...+.+++|+ |++.+|++++.|++|++
T Consensus 152 ~~~~l~s~---s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~i 227 (371)
T d1k8kc_ 152 NSVLLAAG---SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCL 227 (371)
T ss_dssp TSSEEEEE---ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEE
T ss_pred cccceecc---ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceE
Confidence 4556554 4589999999764 46788888899999999998 67888988999999999
Q ss_pred EECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec--------------------------
Q 011970 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE-------------------------- 350 (474)
Q Consensus 298 WDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~-------------------------- 350 (474)
||+.+++++..+.+|...|.+++|+|||++|++++|+.+++|+.+ .....++.
T Consensus 228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (371)
T d1k8kc_ 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307 (371)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred EeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence 999999999999999999999999999999999888888887752 21111111
Q ss_pred ---------------cCCCCcCCCCeeEEEECCCC----CEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 351 ---------------DHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 351 ---------------gH~~~~~~~~v~svafSpDg----~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
.|.+. |++|++.|++ ..|+|++. ||+|+|||+.+
T Consensus 308 ~~~~~~~~~~~~~~~~H~~~-----I~~i~~~~~~~~~~~~~~T~g~-----------Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 308 ASSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRS 360 (371)
T ss_dssp C---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHH
T ss_pred eEEeccccccceecccccCC-----EEEEEEeCCCCcceEEEEEEcC-----------CCeEEEEeCCc
Confidence 14443 6889998865 35888876 99999999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-37 Score=290.96 Aligned_cols=269 Identities=12% Similarity=0.078 Sum_probs=216.8
Q ss_pred ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC
Q 011970 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 117 tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
+++++++|.| |...|.+|+|+| |+|+| .| +++++|++.+++. .|...+..++|+ +
T Consensus 2 ~~~~i~~l~g-H~~~I~~l~~s~----l~sgs----~D------g~v~~Wd~~~~~~---------~h~~~V~~~~~~-~ 56 (287)
T d1pgua2 2 HDEVLKTISG-HNKGITALTVNP----LISGS----YD------GRIMEWSSSSMHQ---------DHSNLIVSLDNS-K 56 (287)
T ss_dssp EEEEEEEECC-CSSCEEEEETTT----TEEEE----TT------SCEEETTTTEEEC---------CCCSCEEEEECC-S
T ss_pred CcceeEEECC-CCCceEEEEECc----EEEEe----CC------CeEEEEECCCCCC---------CCCCCEEEEEec-C
Confidence 4688999998 889999999998 88866 55 6999999766542 244566789997 4
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
+ ..+++++.|+++|+|++.+.+ ....+..+++++++.+++... +..+.+|+..++++++++..+. .. .
T Consensus 57 ~-~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~--~ 124 (287)
T d1pgua2 57 A-QEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAVLTN---DDDLLILQSFTGDIIKSVRLNS-PG--S 124 (287)
T ss_dssp T-TCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEEEET---TSEEEEEETTTCCEEEEEECSS-CE--E
T ss_pred C-CeEEEEeeccccccccccccc-----cccceeeeeeccCCceEEEee---cccceeeeccceeeeeeccccc-ee--e
Confidence 5 468899999999999975422 134677889998776666532 4679999999999999998542 22 3
Q ss_pred EEEecCCCeEEEEeCC-CcEEEEECCCCceEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE-Eecc
Q 011970 277 DFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFED 351 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D-~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~-tl~g 351 (474)
++. ++++.+++++.| +.|++|++.+.+....+ ..|...+.+++|+|+|++|++++ |++|++||+. ++.+. .+.+
T Consensus 125 ~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 203 (287)
T d1pgua2 125 AVS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 203 (287)
T ss_dssp EEE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred eee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence 444 557788887755 68999999887766554 45778899999999999999998 9999999995 77655 5788
Q ss_pred CCCCcCCCCeeEEEECCC----------CCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccc
Q 011970 352 HLLWHPDCNTNNIYITSD----------QDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDEL 420 (474)
Q Consensus 352 H~~~~~~~~v~svafSpD----------g~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~ 420 (474)
|... |.+++|+|+ +++|||||. |++|+|||+.+ ++++..+.+|..
T Consensus 204 h~~~-----v~~~~~~p~~~~~~~~~~~~~~l~sgs~-----------D~~i~iw~~~~~~~~~~~~~~h~~-------- 259 (287)
T d1pgua2 204 RTSK-----INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD-------- 259 (287)
T ss_dssp CSSC-----EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT--------
T ss_pred cccc-----cceeeecccccccccccCCCCeeEeecC-----------CCeEEEEECCCCCeEEEEeCCCCC--------
Confidence 9886 789999875 467888876 99999999977 678999999986
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 421 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|+||+ .|+|++.|++||+|++
T Consensus 260 --------------------------~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 260 --------------------------GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp --------------------------CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred --------------------------CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 89999999997 5899999999999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-36 Score=273.33 Aligned_cols=269 Identities=14% Similarity=0.230 Sum_probs=206.0
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+...|..+.+.+++||+|+.||+|++||+++++++++|.+ |...|.+|.| ++++|+|+| .| .++++|
T Consensus 14 ~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~--~~~~l~s~s----~D------~~i~~~ 80 (293)
T d1p22a2 14 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGS----SD------STVRVW 80 (293)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEE----TT------SCEEEE
T ss_pred CCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeec--ccceeeccc----cc------cccccc
Confidence 5567888888899999999999999999999999999997 7788988876 677898866 45 688899
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecC
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRS 246 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~ 246 (474)
++..++... ... ........+. +....++++..++++++||+.+....
T Consensus 81 ~~~~~~~~~-----~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 128 (293)
T d1p22a2 81 DVNTGEMLN-----TLI-HHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDI------------------------- 128 (293)
T ss_dssp ESSSCCEEE-----EEC-CCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCC-------------------------
T ss_pred ccccccccc-----ccc-cccccccccc-ccccceeecccccceeEeeccccccc-------------------------
Confidence 988887522 111 1111234444 34557888888889999987653321
Q ss_pred CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
.....+..|...+..+.|. +..+++++.|++|++||+++++++..+.+|...+..+.++ +.
T Consensus 129 --------------~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~ 189 (293)
T d1p22a2 129 --------------TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR 189 (293)
T ss_dssp --------------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred --------------cccccccccccccccceec---ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CC
Confidence 1112233333444444443 4567777889999999999999988888888888777665 56
Q ss_pred EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----
Q 011970 327 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---- 400 (474)
Q Consensus 327 llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t---- 400 (474)
.+++++ |++|+|||++ ++++..+.+|... + ..+++++++|++++. ||+|+|||+.+
T Consensus 190 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----v--~~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~ 251 (293)
T d1p22a2 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----V--RCIRFDNKRIVSGAY-----------DGKIKVWDLVAALDP 251 (293)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSC-----E--EEEECCSSEEEEEET-----------TSCEEEEEHHHHTST
T ss_pred eEEEecCCCEEEEEecccceeeeeeccccee-----e--eeccccceEEEEEcC-----------CCEEEEEECCCCccc
Confidence 788887 9999999995 8999999998875 3 357889999999886 99999999743
Q ss_pred -----CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 401 -----GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 401 -----G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.++++++.+|++ .|++|+|+ ++.|||||.||+|+|||
T Consensus 252 ~~~~~~~~~~~~~~H~~----------------------------------~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 252 RAPAGTLCLRTLVEHSG----------------------------------RVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCTTTTEEEEECCCSS----------------------------------CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred cccCCceeeEEecCCCC----------------------------------CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 468899999986 89999994 67899999999999998
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-36 Score=301.32 Aligned_cols=299 Identities=10% Similarity=0.066 Sum_probs=212.7
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc-eeee-c------cccCceEEEEeCCCC
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-LFES-E------SLKWPGFVEFDDVNG 198 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~-lf~~-~------~~~~~~~V~Fs~~nG 198 (474)
+|...|++|++++ +.|+|+| .| ++++||+..+++...... .... . +......+.++..++
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S----~D------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCS----GD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEE----TT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred cccCccEEEEEeC--CEEEEEE----CC------CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence 4889999999875 6899977 45 699999987766422111 0110 0 111112234433456
Q ss_pred eEEEEecCCCcEEEeecCCCeE---EE--EE-------cCCcEEEEEEcCC------ceEEEEecCCCCccEEEEecCCC
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTM---LY--SI-------SDKHVQEIKISPG------IMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~---l~--tl-------~~~~V~~vafSpg------~~la~~s~~s~D~tIkLWdi~tG 260 (474)
.++++++.|++|++|++..... +. .+ ....++.++++++ .+++++ +.|++|++|++...
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT---DVKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE---ETTSCEEEEEEESS
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEE---cCCCcEEEEEeecC
Confidence 7899999999999999764331 11 11 1246888888853 455554 45899999997432
Q ss_pred e---------------EEEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe------ccccCCce
Q 011970 261 T---------------VLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV------SRTEFMTP 316 (474)
Q Consensus 261 ~---------------~L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~------l~~h~~~v 316 (474)
. ..... ..+...+.+|+|++ ++.+++++.|++|+|||+++++++.. +.+|...|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V 234 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234 (393)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred CcccceeeeeeccceecccceecccCCCCcEEEEEECC--CCEEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence 1 11111 13345678999974 45888899999999999999987653 56799999
Q ss_pred EEEEEcCCCcEEEEEc-CCc---EEEEeCC-CcEEEEec-------------cCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 317 SAFIFLYENQLFLTFR-NRT---VAVWNFR-GELVTSFE-------------DHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s-D~t---IklWd~~-G~ll~tl~-------------gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.+++|+|||++|++++ |++ |+|||++ |+++.+|. ||..+ |++|+|+|||++|||+|.
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-----V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEEET
T ss_pred EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-----eeeeccCCCCCeeEEECC
Confidence 9999999999999999 875 9999995 99999885 89888 799999999999999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccc--ccccCEEEEEEcCC
Q 011970 379 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG--EALEDITSLFYDEE 456 (474)
Q Consensus 379 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~V~slafSpD 456 (474)
|++|||||+.+|+|+++|+||.......... + ..+... -+...++.+.|.|+
T Consensus 310 -----------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~ 363 (393)
T d1sq9a_ 310 -----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDI-------------L--AVDEHGDSLAEPGVFDVKFLKK 363 (393)
T ss_dssp -----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGC-------------C--CBCTTSCBCSSCCEEEEEEECT
T ss_pred -----------CCEEEEEECCCCCEEEEECCcCCcccCCccE-------------E--EECCCCCEEEEcccceEEECcc
Confidence 9999999999999999999998521100000 0 000000 11225788888876
Q ss_pred C----------CEEEEEcCCCcEEEcc
Q 011970 457 R----------NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 457 g----------~~LaSgs~DgtVklWd 473 (474)
+ +.|++++.|+.||+|+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 364 GWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CceeccccCCCCEEEEEEcCCeEEEEe
Confidence 5 4599999999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-35 Score=275.89 Aligned_cols=279 Identities=13% Similarity=0.137 Sum_probs=210.5
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~ 200 (474)
..+|.||.+.+|.++. ++|++|||+| .| ++++|||+.+|++... +. +|...|.+|+|+ |++ +
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs----~D------g~i~vWd~~~~~~~~~---l~-~H~~~V~~l~~s-~~~-~ 66 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGA----DD------KMIRVYDSINKKFLLQ---LS-GHDGGVWALKYA-HGG-I 66 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEE----TT------TEEEEEETTTTEEEEE---EE-CCSSCEEEEEEE-TTT-E
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEe----CC------CeEEEEECCCCcEEEE---EE-CCCCCEEEEEEc-CCC-E
Confidence 4579985555566654 5688999976 55 6999999999987442 22 255678899998 554 7
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC------
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL------ 270 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~------ 270 (474)
|++|+.|++|++|++.+.++...... ..+..+.++|++..++.. +.|++|++||++++..+.......
T Consensus 67 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG--SRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE--ETTSEEEEEECCC-----------CCCEEE
T ss_pred EEEEecccccccccccccccccccccccccccccccccccccceeeee--cCCCcEEEEEccCCceeccccccceeccce
Confidence 99999999999999999998876652 234566777755444332 458999999999887665432110
Q ss_pred --------------cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCc
Q 011970 271 --------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 335 (474)
Q Consensus 271 --------------~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~t 335 (474)
.+...+....+++..++.+..|+.|++||+.+++.+....++...+.++.|+|+++++++++ |++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 224 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence 01112333335567888889999999999999999999999999999999999999999999 999
Q ss_pred EEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 336 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 336 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
|++||++ ++++..+++|... |.+++|+ +++|++++. ||+|++||+.++++. +.+|..
T Consensus 225 i~i~d~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~~~~~-----------dg~i~iwd~~~~~~~--~~~~~~-- 282 (355)
T d1nexb2 225 IRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRK--FSYHHT-- 282 (355)
T ss_dssp EEEEETTTCCEEEEECCCSSC-----CCEEEEC--SSEEEEECT-----------TSEEEEEETTTCCEE--EEEECT--
T ss_pred EEeeecccccccccccccccc-----ccccccc--cceeeeeec-----------cccccccccccccee--cccccC--
Confidence 9999995 9999999999987 6788886 579999876 999999999887654 556664
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+. .++|+|+++.|++|+ |++|+|||.
T Consensus 283 --------------------------------~~~~~~~~~~~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 283 --------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp --------------------------------TCCCCCEEEECSSEEEEEE-TTEEEEEET
T ss_pred --------------------------------CceEEEEEcCCCCEEEEEe-CCEEEEEEC
Confidence 222 246789999888876 899999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-34 Score=271.46 Aligned_cols=283 Identities=14% Similarity=0.235 Sum_probs=224.0
Q ss_pred eeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEE
Q 011970 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (474)
Q Consensus 113 W~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~ 192 (474)
|+..+-++.++|+| |.+.|.+ +++++|++|||+| .| ++++|||+.+|++... +. +|...|.+|+
T Consensus 1 W~~~~~~~~~~l~G-H~~~V~s-~~~~~g~~l~sgs----~D------g~i~vWd~~~~~~~~~---~~-~h~~~V~~v~ 64 (342)
T d2ovrb2 1 WRRGELKSPKVLKG-HDDHVIT-CLQFCGNRIVSGS----DD------NTLKVWSAVTGKCLRT---LV-GHTGGVWSSQ 64 (342)
T ss_dssp HHHSCCCCCEEEEC-STTSCEE-EEEEETTEEEEEE----TT------SCEEEEETTTCCEEEE---CC-CCSSCEEEEE
T ss_pred CCCCCCCcCEEECC-cCCceEE-EEEECCCEEEEEe----CC------CeEEEEECCCCCEEEE---Ee-CCCCCEEEEE
Confidence 66677788999998 6666666 4778899999976 55 6999999999997543 22 2456677999
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|+ |+ +|++++.|+++++|+........... ...+....+.+... +.+ ..|.++.+|+.++++....+..+.
T Consensus 65 ~~-~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~d~~i~~~~~~~~~~~~~~~~~~ 137 (342)
T d2ovrb2 65 MR-DN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV-VSG---SRDATLRVWDIETGQCLHVLMGHV 137 (342)
T ss_dssp EE-TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE-EEE---ETTSEEEEEESSSCCEEEEEECCS
T ss_pred eC-CC--ccccceecccccccccccccceecccccceeEeeeecccccc-ccc---ccceeEEEeecccccceeeeeccc
Confidence 98 44 89999999999999998888766655 34566666555443 333 347899999999999998887543
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
...... .+....+++++.|++|++||+..++++..+.+|...+.. ++++++.|++++ |++|++||++ ++++++
T Consensus 138 ~~~~~~---~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~ 212 (342)
T d2ovrb2 138 AAVRCV---QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212 (342)
T ss_dssp SCEEEE---EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccceee---ccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeE
Confidence 333222 244678888999999999999999999999999876655 466889999999 9999999995 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+.+|... |.++++ ++++|++++. |++|+|||+.+++....+.+|..+.
T Consensus 213 ~~~~~~~-----v~~~~~--~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~~~~~-------------- 260 (342)
T d2ovrb2 213 LTGHQSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNKHQ-------------- 260 (342)
T ss_dssp ECCCCSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTSCS--------------
T ss_pred ecccccc-----eeEEec--CCCEEEEEcC-----------CCEEEEEecccccccccccccceee--------------
Confidence 9999876 556555 5679999987 9999999999999999998876411
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+.++.|+ ++.|+||+.||+|+|||.
T Consensus 261 -----------------~~~~~~~~~--~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 261 -----------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp -----------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -----------------eceeecccC--CCeeEEEcCCCEEEEEEC
Confidence 166666665 569999999999999984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-35 Score=286.50 Aligned_cols=282 Identities=10% Similarity=0.087 Sum_probs=218.8
Q ss_pred cEEEEEee--ccEEEEeeCCC-eEEeeeccc--cceeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCccceeeeE
Q 011970 90 KVIEIVAA--RDIVFALAHSG-VCAAFSRET--NRRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dg-tiklW~~~t--g~~l~~l~g~~~~~i~sv~fsp--dg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
.+..+.|. ++.||.++.+. .++.|+... ...+..+.|++...|.+|+|+| +|++|+|++ .| ++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs----~D------g~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD----ES------GK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE----TT------SE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe----CC------CC
Confidence 34455555 88888876554 467887554 3557788886678899999998 577898866 55 69
Q ss_pred EEEeEeccCCCCCccceeee----ccccCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEc--CCcEEEEEE
Q 011970 163 TKIEYIRRGKPDSGFALFES----ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS--DKHVQEIKI 234 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~----~~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~--~~~V~~vaf 234 (474)
++||++..++.......... .+...+..|+|+ +||+.|++++ .|+.+++|+..+++++.++. ...|.+++|
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred EEEeeecCCcceeeeecccccccccccCcEEEEEEC-CCCCccceeeccccceEEEEeecccccceeeeecccccccccc
Confidence 99999988776432221110 134456789998 7999988766 47789999999999999986 468999999
Q ss_pred cC-CceEEEEecCCCCccEEEEecCCCeEEEEEe---ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc
Q 011970 235 SP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 235 Sp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~ 310 (474)
+| +..++++ ++.|+.|++||+++++...++. .|...+.+++|+|..+..+++++.|++|+|||+++++++.++.
T Consensus 168 ~~~~~~~~~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 245 (325)
T d1pgua1 168 KQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245 (325)
T ss_dssp CSSSSCEEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred cccccceEEE--eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence 98 4443433 2458999999999999887775 4566789999985445677778999999999999999999999
Q ss_pred ccCCceEEEEEc---CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccc
Q 011970 311 TEFMTPSAFIFL---YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQ 384 (474)
Q Consensus 311 ~h~~~v~sv~Fs---pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-g~~LaS~s~~~~~~~ 384 (474)
+|...+..++|+ |||++|++++ |++|+|||++ |++++++..|...+. +..+++.++ +.+|+|+|.
T Consensus 246 ~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~s~------ 316 (325)
T d1pgua1 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG---NQQVGVVATGNGRIISLSL------ 316 (325)
T ss_dssp BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG---GCEEEEEEEETTEEEEEET------
T ss_pred ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc---CeEEEEEECCCCEEEEEEC------
Confidence 999888877776 8999999999 9999999995 999999988876532 344555544 347888876
Q ss_pred cccCCCCeEEEEeC
Q 011970 385 WMEGSAGSINVSSI 398 (474)
Q Consensus 385 ~~~s~DgtIklWdi 398 (474)
||+|++||+
T Consensus 317 -----dg~i~vwdl 325 (325)
T d1pgua1 317 -----DGTLNFYEL 325 (325)
T ss_dssp -----TSCEEEEET
T ss_pred -----CCEEEEEEC
Confidence 999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.8e-36 Score=277.22 Aligned_cols=287 Identities=11% Similarity=-0.020 Sum_probs=207.4
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk 199 (474)
.+..++ +|++.|.+|+|+|+|+.||++| .| ++++||++..++...... ...+|...|.+|+|+++++.
T Consensus 3 ~v~~~~-~h~d~I~~l~fsp~~~~L~s~s----~D------g~v~iwd~~~~~~~~~~~-~~~~h~~~V~~v~f~~~~~~ 70 (342)
T d1yfqa_ 3 IVQIEQ-APKDYISDIKIIPSKSLLLITS----WD------GSLTVYKFDIQAKNVDLL-QSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp EEECSS-CCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEEEETTTTEEEEE-EEEECSSCEEEEEEEESSSE
T ss_pred eEEcCC-CCCCCEEEEEEeCCCCEEEEEE----CC------CeEEEEEccCCCcceEEE-EecCCCCCEEEEEEeCCCCC
Confidence 445556 4889999999999999999976 55 699999998776422111 11134566779999966688
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe----ecCc
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLLH 271 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~----~h~~ 271 (474)
+|++|+.|++|++|++.++........ .......+.+ +..+++. +.|+++++||++++.....+. .+..
T Consensus 71 ~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA---SWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEE---ETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEEcccccceeeeeccccccccccccccccccccccccccccccccc---ccccccceeeccccccceeeecccccccc
Confidence 999999999999999998887666542 2233344443 5555555 447899999987665443332 2211
Q ss_pred --ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE---eccccCCceEEEE-EcCCCcEEEEEc-CCcEEEEeCC-C
Q 011970 272 --RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFI-FLYENQLFLTFR-NRTVAVWNFR-G 343 (474)
Q Consensus 272 --~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~---~l~~h~~~v~sv~-Fspdg~llaS~s-D~tIklWd~~-G 343 (474)
......+. +.+..+++++.|++|++||+.+++... ....+...+.... +++++..+++++ |+.+.+|+++ .
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 148 KVKNKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSCCCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred cceeeeeeee-ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence 12333333 556788889999999999998876532 2233344455544 567888899998 9999999974 2
Q ss_pred cE------EEE---------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 344 EL------VTS---------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 344 ~l------l~t---------l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
.. ... ..+|... |++|+|+|+|++||||+. ||+|+|||+.+++++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~lasg~~-----------Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 227 GDDYNSSKRFAFRCHRLNLKDTNLAYP-----VNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCC-----EEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECC
T ss_pred cceeeccccceeeeeeeccCCCccccc-----ceeEEecCCccEEEEECC-----------CCEEEEEECCCCcEEEEec
Confidence 11 111 1233332 789999999999999987 9999999999999999987
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|. .+..++|+|+|+.||+|+.|.++++|.
T Consensus 291 ~~~-----------------------------------~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 291 KFN-----------------------------------EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCS-----------------------------------SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred CCC-----------------------------------CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 654 355688999999999999999988885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-34 Score=284.82 Aligned_cols=274 Identities=8% Similarity=0.047 Sum_probs=201.2
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccce------eeEeecCCCceEEE------EEEe-eCCCEEEEEEeecCC
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRR------ICFLNVSPDEVIRS------LFYN-KNNDSLITVSVYASD 153 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~------l~~l~g~~~~~i~s------v~fs-pdg~~Lis~S~~~s~ 153 (474)
|...|.+|.+.++.|+++|.|++||+||..+++. ...... |...+.. +..+ .++..+++++ .
T Consensus 13 H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~ 87 (393)
T d1sq9a_ 13 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS----F 87 (393)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE----T
T ss_pred ccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeee-ccCCceEeeeEeeeccCCCCCcEEEEEe----C
Confidence 8889999999999999999999999999776542 111111 2222222 2222 1233455544 5
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeee------ccccCceEEEEeC----CCCeEEEEecCCCcEEEeecCCCe----
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFES------ESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYT---- 219 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~------~~~~~~~~V~Fs~----~nGk~LaS~s~D~tiKlWdl~tg~---- 219 (474)
| +++++|++..+........... .+......++|.+ +.+.+|++++.|+++++||+....
T Consensus 88 d------g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 88 S------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp T------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred C------CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence 5 6889999876654322111110 0111233566652 136789999999999999974221
Q ss_pred -----------EEEEEc-----CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe------ecCcceeEEE
Q 011970 220 -----------MLYSIS-----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY------HLLHRNKKVD 277 (474)
Q Consensus 220 -----------~l~tl~-----~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~------~h~~~v~~V~ 277 (474)
+..... ...+.+|+|||++.||++ +.|++|+|||+++|+++.+++ +|...|.+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasg---s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG---FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE---CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred eeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEE---eCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 111111 246889999999888876 568999999999999988765 5888999999
Q ss_pred EEecCCCeEEEEeCCCc---EEEEECCCCceEEecc-------------ccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 278 FIEQFNEKLLVKQENEN---LQILDVRNAELMEVSR-------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~t---IkIWDv~tg~~~~~l~-------------~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
|+ |++..|++++.|++ |+|||+++++++.++. +|...|++++|+|||++|+|++ |++|||||
T Consensus 239 ~s-pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 239 FS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp EC-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cc-cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 98 67888888998875 8999999999888764 8999999999999999999999 99999999
Q ss_pred CC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 341 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 341 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
++ |+|+++|+||...+... ...++|+|+|+.++++
T Consensus 318 ~~~g~~~~~l~gH~~~v~~~-~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 318 VKTKERITTLNMHCDDIEIE-EDILAVDEHGDSLAEP 353 (393)
T ss_dssp TTTTEEEEEEECCGGGCSSG-GGCCCBCTTSCBCSSC
T ss_pred CCCCCEEEEECCcCCcccCC-ccEEEECCCCCEEEEc
Confidence 95 99999999999876432 3568899999887764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=7.9e-35 Score=278.18 Aligned_cols=306 Identities=11% Similarity=-0.029 Sum_probs=223.1
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|++||+++ +|.+.+|+.++|+.++. .|...|++++|||||+.|++++.+ ++ ..+++|+...|+...
T Consensus 15 G~~~a~~~-~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~~~--~g------~~v~v~d~~~~~~~~-- 80 (360)
T d1k32a3 15 GDLIAFVS-RGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTR--EG------DFLGIYDYRTGKAEK-- 80 (360)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEEET--TE------EEEEEEETTTCCEEE--
T ss_pred CCEEEEEE-CCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEEcC--CC------CEEEEEECCCCcEEE--
Confidence 88888877 57999999998887654 377889999999999999987742 33 578999998888622
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEec-------CC
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNR-------SS 247 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~-------~s 247 (474)
+. .+...+..++|+ |||++|++++.|+++++|++.++++...+. ...+.+++|||++ +||.... ..
T Consensus 81 --~~-~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 81 --FE-ENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp --CC-CCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred --ee-CCCceEEeeeec-ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 22 235567789998 799999999999999999999999887775 4578899999854 4544321 24
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE-------EeccccCCceEEEE
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-------EVSRTEFMTPSAFI 320 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-------~~l~~h~~~v~sv~ 320 (474)
.+..+++||++++++...+. |.+.+..+.|+ |++..|+.++.|+++++||.....+. .....|...+..+.
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATT-ENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp CEEEEEEEETTTTEEEECSC-SSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred cccceeeeccccCceeeecc-ccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence 45679999999998876555 45677888887 68888998999999999998765532 23344556666677
Q ss_pred EcCCCcEEEEEc-CCc---EEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 321 FLYENQLFLTFR-NRT---VAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 321 Fspdg~llaS~s-D~t---IklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
|+|+++.++++. +.. .++|.+ .+.....+..|...+ ..+....+++++.++++++ .++.|+
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~i~ 301 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI--LIYSVPVHGEFAAYYQGAP-----------EKGVLL 301 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE--EEEECCCCCSHHHHHHCCC-----------CCEEEE
T ss_pred ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc--eEEEEEecCCCeeEEEecC-----------CCCEEE
Confidence 899998887765 432 334444 322222333332210 0022233333444555544 499999
Q ss_pred EEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 395 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+||+.++++. .|.. .|.+++|||||++|++++.||+|++||.
T Consensus 302 ~~d~~~~~~~----~~~~----------------------------------~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 302 KYDVKTRKVT----EVKN----------------------------------NLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEETTTCCEE----EEEE----------------------------------EEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred EEECCCCeEE----EecC----------------------------------CcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 9999887753 3332 6899999999999999999999999984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.4e-34 Score=288.57 Aligned_cols=326 Identities=9% Similarity=0.031 Sum_probs=224.6
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
-++++.+.||+|++||..||+++.+|+. + +.+.+|+|||||++|++++ .| .++++||+.+|++.....
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~----~d------~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEe----CC------CCEEEEEccCCceeEEEE
Confidence 3568899999999999999999999997 4 4589999999999999876 34 589999999998632111
Q ss_pred eee-eccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEcC-------------CcEEEEEEcCCceEEEE
Q 011970 179 LFE-SESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-------------KHVQEIKISPGIMLLIF 243 (474)
Q Consensus 179 lf~-~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~~-------------~~V~~vafSpg~~la~~ 243 (474)
+-. .++...+.+++|+ |||++| +++..|+++++||.+++.++..+.. .....+++++++..+..
T Consensus 101 i~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 101 IKIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp EECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred EeCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence 111 0233344467887 799986 5556899999999999998877642 23455666653333332
Q ss_pred ecCCCCccEEEEecCCCeEEE-EEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccc--cCCceEEE
Q 011970 244 NRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT--EFMTPSAF 319 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG~~L~-tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~--h~~~v~sv 319 (474)
.. .....+.+++..++..+. +...+......++|. +++.+++++. .+..+.+||..+++++..... +.......
T Consensus 180 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (426)
T d1hzua2 180 NV-KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257 (426)
T ss_dssp EE-TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC-TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred ec-CCCCeEEEEEeccccceeeEEeccCCccEeeeEC-CCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence 21 224456666666655432 333566778899987 5677777764 778899999999998865432 22223333
Q ss_pred EEcCCC--cEEE-EEc-CCcEEEEeCC--------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 320 IFLYEN--QLFL-TFR-NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 320 ~Fspdg--~lla-S~s-D~tIklWd~~--------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
.|.+++ ..++ +.+ |++|.+|+.. +++..++++|... +++++|||||++|+...... ..+
T Consensus 258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~-----v~~v~~sPdg~~l~v~~~~~----~s~ 328 (426)
T d1hzua2 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTFN----PDA 328 (426)
T ss_dssp EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC-----CCCEECCTTCSEEEECCTTC----SSH
T ss_pred eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc-----eeEEEcCCCCceEEEeecCC----CCc
Confidence 333322 2222 233 7788887742 5899999999887 68999999999999532100 012
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EE----
Q 011970 388 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YT---- 462 (474)
Q Consensus 388 s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L-aS---- 462 (474)
+.|++|+|||+.||++++++..+.. +....++-..|++++|||||++| +|
T Consensus 329 ~~~~tv~vwd~~t~~~~~~~~~~~~-------------------------~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~ 383 (426)
T d1hzua2 329 RISQSVAVFDLKNLDAKYQVLPIAE-------------------------WADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383 (426)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHH-------------------------HHCCCSSCCCEEEEEECSSSSEEEEEECCC
T ss_pred ccCCEEEEEECCCCCcCeEEeccch-------------------------hcccCCCCccEEEEEECCCCCEEEEEEecC
Confidence 2389999999999999888754321 00011222379999999999977 44
Q ss_pred EcCCCcEEEcc
Q 011970 463 GNRHGLVHVWS 473 (474)
Q Consensus 463 gs~DgtVklWd 473 (474)
++.|++|+|||
T Consensus 384 ~~~~~~i~v~D 394 (426)
T d1hzua2 384 KNDSSALVVVD 394 (426)
T ss_dssp TTSCCEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 35799999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-32 Score=257.93 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=204.6
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
|..+|.++.|+. ||+++.||+|++||..+++ + .|...|.+++|++++. ++++| .| .++++|
T Consensus 12 H~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~-~h~~~V~~~~~~~~~~-~~s~s----~D------~~v~~w 72 (287)
T d1pgua2 12 HNKGITALTVNP--LISGSYDGRIMEWSSSSMH-----Q-DHSNLIVSLDNSKAQE-YSSIS----WD------DTLKVN 72 (287)
T ss_dssp CSSCEEEEETTT--TEEEETTSCEEETTTTEEE-----C-CCCSCEEEEECCSTTC-CEEEE----TT------TEEEET
T ss_pred CCCceEEEEECc--EEEEeCCCeEEEEECCCCC-----C-CCCCCEEEEEecCCCe-EEEEe----ec------cccccc
Confidence 566666666654 8999999999999988654 3 4778899999998765 67765 44 588999
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEe
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFN 244 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~la~~s 244 (474)
++...++ . ..|..++++ ++|..+++++ ++.+.+|+..+++++.++.. ..+ .+++| +..+++++
T Consensus 73 ~~~~~~~-------~----~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ 137 (287)
T d1pgua2 73 GITKHEF-------G----SQPKVASAN-NDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGL 137 (287)
T ss_dssp TEEEEEC-------S----SCEEEEEEC-SSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEE
T ss_pred ccccccc-------c----cceeeeeec-cCCceEEEee-cccceeeeccceeeeeecccccee--eeeeccCcceeeec
Confidence 8765442 1 134467886 7888887765 55688999999999888864 344 45554 55666664
Q ss_pred cCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEc
Q 011970 245 RSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFL 322 (474)
Q Consensus 245 ~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fs 322 (474)
..++.|++|++.+.+....+. .|...+..++|+ |++.+|++++.|+.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 138 --~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 138 --EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp --TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred --cccceeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeecccccccccccccccccceeeec
Confidence 335689999998877776665 466789999997 6788899999999999999999987654 78899999999998
Q ss_pred CC----------CcEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 323 YE----------NQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 323 pd----------g~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|+ +++|+|++ |++|+|||+ + ++++..+.+|... |++++|+||++ |+|++.
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~-----V~~v~~~~~~~-l~s~g~----------- 277 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-----VNNLLWETPST-LVSSGA----------- 277 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-----EEEEEEEETTE-EEEEET-----------
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC-----eEEEEECCCCE-EEEEEC-----------
Confidence 74 57899999 999999998 4 7789999999987 79999999975 777765
Q ss_pred CCeEEEEeC
Q 011970 390 AGSINVSSI 398 (474)
Q Consensus 390 DgtIklWdi 398 (474)
|++||||||
T Consensus 278 D~~v~iW~i 286 (287)
T d1pgua2 278 DACIKRWNV 286 (287)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-32 Score=254.92 Aligned_cols=288 Identities=8% Similarity=0.071 Sum_probs=206.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEee--cCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeee
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLN--VSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~--g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~ 161 (474)
|+..|.+|.|+ +++||++|.||+||+||++++.....+. ..|...|.+|+|+|++. .|++++ .| +
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~----~d------~ 79 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT----VQ------G 79 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE----TT------S
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc----cc------c
Confidence 66778888888 9999999999999999998765433222 13788999999999865 566654 55 6
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE----EEEEcC----CcEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISD----KHVQEIK 233 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~----l~tl~~----~~V~~va 233 (474)
++++|++..+..... ....+........+. +++..+++++.|+++++||+.++.. ...... .......
T Consensus 80 ~v~~w~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQA---LTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp CEEEECSSSSSSEEE---CBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred ceeeeeccccccccc---ccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 899999887775321 111111111233443 6788999999999999999865442 222221 2334455
Q ss_pred EcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe---ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE---
Q 011970 234 ISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--- 306 (474)
Q Consensus 234 fSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~--- 306 (474)
+.+ +..++++ +.|++|++||+.+++....+. .+......+.+.+.++..+++++.|+.+.+|++......
T Consensus 156 ~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~ 232 (342)
T d1yfqa_ 156 MDTNSSRLIVG---MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEECSSEEEEE---ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred eeccCCceeee---cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence 554 5556655 347999999998877544332 344556677777677778888999999999998754321
Q ss_pred ------E------eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 307 ------E------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 307 ------~------~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
. ...+|...+.+++|+|++++|||++ ||+|+|||++ ++++.++..|.. +..++|+|+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~------~~~~~~s~~~~~ 306 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNI 306 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS------SEEEEEEECSSE
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC------CEEEEEEeCCCE
Confidence 1 1245777899999999999999999 9999999995 999999976543 356899999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
||+++. |+++|+|... ..+++.|..
T Consensus 307 l~~a~s-----------dd~~~~~~~~----~~~~~~~~~ 331 (342)
T d1yfqa_ 307 LCLATS-----------DDTFKTNAAI----DQTIELNAS 331 (342)
T ss_dssp EEEEEE-----------CTHHHHCSSS----CTTSCCCCC
T ss_pred EEEEEc-----------CCcEEEeeee----CCCccCCCC
Confidence 999876 8899999752 224556653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.98 E-value=2.8e-30 Score=265.04 Aligned_cols=333 Identities=10% Similarity=0.011 Sum_probs=225.4
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
-++++.+.||++++||.+|++++++|+. + ..+.+++|||||++|+++| .| .++++||+.+++......
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s----~d------g~v~~~d~~t~~~~~~~~ 100 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTVAE 100 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEc----CC------CCEEEEEeeCCCceEEEE
Confidence 3369999999999999999999999997 4 3589999999999999876 34 589999999888532111
Q ss_pred eeee-ccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-------------CCcEEEEEEcC-CceEEE
Q 011970 179 LFES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-------------DKHVQEIKISP-GIMLLI 242 (474)
Q Consensus 179 lf~~-~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-------------~~~V~~vafSp-g~~la~ 242 (474)
+-.. ++...+.+++|| |||++| ++++.|++|+|||.++++++.++. +.....|++|| |..++.
T Consensus 101 i~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v 179 (432)
T d1qksa2 101 IKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179 (432)
T ss_dssp EECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred EecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence 1111 122333345776 799976 789999999999999999988764 23567899997 445444
Q ss_pred EecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEecc-----ccCCc
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR-----TEFMT 315 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~-----~h~~~ 315 (474)
+. ..+++|.+||..+++.++... .+......++|+ |++.++++++ .++++.++|..+++.+.... .|...
T Consensus 180 s~--~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~ 256 (432)
T d1qksa2 180 NV--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 256 (432)
T ss_dssp EE--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EE--ccCCeEEEEEccCCCcceEEEEcccCccccceEC-CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc
Confidence 43 457899999999998776555 344567889987 6788888875 77899999999998876532 25556
Q ss_pred eEEEEEcCCCcEEEEEc--CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 316 PSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s--D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
...+.+++.+...++.. |++|.+|+.... .+.+|... |...+|+|+|..+++++. |+++
T Consensus 257 ~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---~~~~~~~~-----v~~~~~~~~g~~~~~~s~-----------p~~~ 317 (432)
T d1qksa2 257 GANFVHPTFGPVWATSHMGDDSVALIGTDPE---GHPDNAWK-----ILDSFPALGGGSLFIKTH-----------PNSQ 317 (432)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTT---TCTTTBTS-----EEEEEECSCSCCCCEECC-----------TTCS
T ss_pred ccceecCCCCceecccccCCceEEecccccc---cccccccE-----EEEEEEcCCCCeEEEEec-----------CCcc
Confidence 66777788888888775 889999987421 12344433 567778888777777654 5555
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc---cccccccccc--ccccccccCEEEEEEcCCCCEEEEEc----
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS---KKLNKSSYIR--STVGEALEDITSLFYDEERNEIYTGN---- 464 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~~V~slafSpDg~~LaSgs---- 464 (474)
+||+..++. +|... ....+.+.+...++ .+..+.|++. ..+.++...|.+++|||||++|+.+.
T Consensus 318 ~lw~~~~~~------~~~~~-~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~ 390 (432)
T d1qksa2 318 YLYVDATLN------PEAEI-SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK 390 (432)
T ss_dssp EEEEECTTC------SSHHH-HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred ceeecccCC------CCCCe-eeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCC
Confidence 566543321 11100 00000000001111 1122223221 12224445899999999999885553
Q ss_pred -CCCcEEEcc
Q 011970 465 -RHGLVHVWS 473 (474)
Q Consensus 465 -~DgtVklWd 473 (474)
.||.|+|||
T Consensus 391 ~~~g~i~i~D 400 (432)
T d1qksa2 391 DQESALVVVD 400 (432)
T ss_dssp TSCCEEEEEE
T ss_pred CCCCcEEEEE
Confidence 578899998
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.8e-29 Score=225.77 Aligned_cols=224 Identities=15% Similarity=0.224 Sum_probs=181.4
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+..-|.+ ++ +||++||||+.|++|||||++++++++++. ...|.+|+|+ +.+|+++ +.|++|++|++.++.
T Consensus 14 ~~~~V~c--~~-~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~-~~~l~s~---s~D~~i~~~~~~~~~ 86 (293)
T d1p22a2 14 TSKGVYC--LQ-YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITG---SSDSTVRVWDVNTGE 86 (293)
T ss_dssp SCCCEEE--EE-CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEE---ETTSCEEEEESSSCC
T ss_pred CCCCEEE--EE-EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc-cceeecc---ccccccccccccccc
Confidence 3443444 44 479999999999999999999999999996 4689999885 4567766 458999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce---EEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
.......+...... +. +....++++..++++++||..+... ...+..|...+..+.|.+ ..+++++ |++|+
T Consensus 87 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~ 161 (293)
T d1p22a2 87 MLNTLIHHCEAVLH--LR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK 161 (293)
T ss_dssp EEEEECCCCSCEEE--EE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEE
T ss_pred cccccccccccccc--cc-ccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCcee
Confidence 98888754443333 32 4467888899999999999998764 345677888887776655 4566777 99999
Q ss_pred EEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 338 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 338 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
+||.+ ++++.++++|... +..+. +++.+|++++. |++|+|||+.+++++.++.+|..
T Consensus 162 ~~d~~~~~~~~~~~~~~~~-----v~~~~--~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~---- 219 (293)
T d1p22a2 162 VWNTSTCEFVRTLNGHKRG-----IACLQ--YRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE---- 219 (293)
T ss_dssp EEETTTCCEEEEEECCSSC-----EEEEE--EETTEEEEEET-----------TSCEEEEETTTCCEEEEECCCSS----
T ss_pred eecCCCCcEEEEEcccccc-----ccccc--CCCCeEEEecC-----------CCEEEEEecccceeeeeecccce----
Confidence 99995 9999999999875 44554 46789999886 99999999999999999999885
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|. .++++++.|++|+.||+|+|||
T Consensus 220 ------------------------------~v~--~~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 220 ------------------------------LVR--CIRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp ------------------------------CEE--EEECCSSEEEEEETTSCEEEEE
T ss_pred ------------------------------eee--eccccceEEEEEcCCCEEEEEE
Confidence 564 5778999999999999999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=7e-28 Score=224.47 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=213.7
Q ss_pred EEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee
Q 011970 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (474)
Q Consensus 102 as~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~ 181 (474)
++.+.|++|++||++|++.++++..+ ...+.|+|||||+.|+.++ ..+ .++++||+.++++... +.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~---~~~------~~i~v~d~~t~~~~~~---~~ 71 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVAN---AHS------NDVSIIDTATNNVIAT---VP 71 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEE---GGG------TEEEEEETTTTEEEEE---EE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEE---CCC------CEEEEEECCCCceeee---ee
Confidence 56789999999999999999999863 3478999999999886443 234 5899999999887442 22
Q ss_pred eccccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecC
Q 011970 182 SESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~ 258 (474)
. ...+..++|+ ++|+ +++++..+..+++||+.+++++..+. ......++|+|+ ..++... ..+.++.+|+..
T Consensus 72 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~ 146 (301)
T d1l0qa2 72 A--GSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTV 146 (301)
T ss_dssp C--SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETT
T ss_pred c--cccccccccc-cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeee--ccccceeeeecc
Confidence 2 2346689998 5666 56677889999999999999998887 457889999984 4444443 457899999999
Q ss_pred CCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc----C
Q 011970 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----N 333 (474)
Q Consensus 259 tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s----D 333 (474)
+++.+.++..+ .....++|. +++..++++. .++.+.+|+....+.......+ ..+..++|+++|+.++.+. +
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 147 TKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp TTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSC
T ss_pred ccceeeecccC-CCceEEEee-ccccceeeecccccccccccccceeeeeccccc-CCcceeecccccccccccccccee
Confidence 99999999865 456778886 6677777765 5678889998888887776555 4678899999999876543 4
Q ss_pred CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 334 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 334 ~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L-aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
++|++||.. ++++.++..+.. +..++|||||++| ++++. |++|++||+.||++++++.-
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~~------~~~va~spdg~~l~va~~~-----------~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------CNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCCC------EEEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCeEEEEEeC
Confidence 689999995 999999876643 5899999999987 56544 89999999999999999953
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=7.2e-28 Score=224.41 Aligned_cols=254 Identities=10% Similarity=0.124 Sum_probs=206.8
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-C
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-G 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g 237 (474)
.++.+||+.+|+..+.++ .+ ..|..|+|| |||++| ++++.|++|++||+++++++.++. ...+..++|++ +
T Consensus 12 ~~v~v~D~~t~~~~~~i~---~g--~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIP---VG--SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (301)
T ss_dssp TEEEEEETTTTEEEEEEE---CS--SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEE---CC--CCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence 589999999999755332 21 346789998 799976 688899999999999999999987 45789999997 5
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..+++.. ..+..+.+|+..+++++..+..+ .....+.|+ +++..+++. ..|+++.+||..+++.+..+..+ ..+
T Consensus 86 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 86 KQVYVTN--MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp SEEEEEE--TTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred ccccccc--cccceeeecccccceeeeecccc-ccceEEEee-cCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence 5555553 45789999999999999999865 456778876 677777665 58999999999999999886655 468
Q ss_pred EEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 317 SAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
..++|+|+++.++++. ++.+.+|+.. +++...+..+.. ..+++|+|+|+.++.++. ...+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~v~~~--------~~~~~~v 226 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNV--------DKYFNTV 226 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEE--------CSSCCEE
T ss_pred eEEEeeccccceeeecccccccccccccceeeeecccccCC------cceeeccccccccccccc--------cceeeee
Confidence 8999999999888776 5688888885 777777776654 478999999999877654 2347899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEEcCCCcEEEc
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVW 472 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L-aSgs~DgtVklW 472 (474)
++||+.++++++++..+. .+++|+|||||++| ++++.|++|++|
T Consensus 227 ~v~D~~t~~~~~~~~~~~-----------------------------------~~~~va~spdg~~l~va~~~~~~i~v~ 271 (301)
T d1l0qa2 227 SMIDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFCNTVSVI 271 (301)
T ss_dssp EEEETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeeecCCCeEEEEEcCCC-----------------------------------CEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 999999999999997765 68899999999987 688899999999
Q ss_pred cC
Q 011970 473 SN 474 (474)
Q Consensus 473 d~ 474 (474)
|.
T Consensus 272 D~ 273 (301)
T d1l0qa2 272 DT 273 (301)
T ss_dssp ET
T ss_pred EC
Confidence 83
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=1.9e-28 Score=230.92 Aligned_cols=280 Identities=10% Similarity=0.006 Sum_probs=211.3
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCC-CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~-~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
+++++++++|++|++||.++++++.++.... ...+.+++|+|||++|+.++ +.+ ..+.+||+.+|++...
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~------~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEE
Confidence 4789999999999999999999999998633 24578999999999886543 345 5899999999997544
Q ss_pred cceeeec-cccCceEEEEeCCCCeEEEEec------------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEE
Q 011970 177 FALFESE-SLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLL 241 (474)
Q Consensus 177 ~~lf~~~-~~~~~~~V~Fs~~nGk~LaS~s------------~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la 241 (474)
..+.... +...+..++|+ |||+.|+.+. .+..+.+||+.+++++.++. ...+..++|+|++ +++
T Consensus 72 ~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 150 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150 (337)
T ss_dssp EECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred EecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEE
Confidence 3322211 23445579998 7999998776 47889999999999999887 4578899999855 454
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe-----------------------cCCCeEEEEeCCCcEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------QFNEKLLVKQENENLQIL 298 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~-----------------------~~~~~ll~~~~D~tIkIW 298 (474)
+. + ..+.+||+.++++..++..+.... ...+.+ .+.........++.+.+|
T Consensus 151 ~~---~--~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (337)
T d1pbyb_ 151 GL---G--RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EE---S--SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EE---c--CCcceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence 44 2 357899999999999887532211 001100 001111112345679999
Q ss_pred ECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 299 DVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 299 Dv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
|..++++... ...|...+..++++|++.+++.. |++|++||+. ++++.++.. ... +.+++|||||++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-~~~-----~~~~~~s~dG~~l~v~ 297 (337)
T d1pbyb_ 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHS-----YYSVNVSTDGSTVWLG 297 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSC-----CCEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC-CCC-----EEEEEECCCCCEEEEE
Confidence 9999997754 55677788899999999988654 6899999995 999988863 332 5799999999999998
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+. |++|++||+.|+|.+.+|+-..
T Consensus 298 ~~-----------~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 298 GA-----------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp SB-----------SSEEEEEETTTCCEEEEEECGG
T ss_pred eC-----------CCcEEEEECCCCcEEEEEECCC
Confidence 76 9999999999999999986543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=1.7e-28 Score=247.85 Aligned_cols=302 Identities=7% Similarity=-0.045 Sum_probs=208.1
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEe--ec--CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFL--NV--SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l--~g--~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.|..|+|+ |++|++++.||++++||++|+++.... .. .|...+.+++|+|||++|+.++. .+ .++
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~---~~------~~v 133 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY---WP------PQF 133 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ES------SEE
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec---CC------CeE
Confidence 46677777 999999999999999999999865432 21 26677889999999999876552 34 689
Q ss_pred EEeEeccCCCCCccceeeec-------cccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeE--EEEE-cCCcEEEE
Q 011970 164 KIEYIRRGKPDSGFALFESE-------SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTM--LYSI-SDKHVQEI 232 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~-------~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~--l~tl-~~~~V~~v 232 (474)
++||..++++.......... .-..+..++++ +|++.+.... ..+.+-+++..++.. +..+ .+..++++
T Consensus 134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
T d1hzua2 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212 (426)
T ss_dssp EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEE
T ss_pred EEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEee
Confidence 99999998874321111110 01112234554 3444443322 234444555444432 2222 35689999
Q ss_pred EEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee--cCcceeEEEEEecCCCeEEEE--eCCCcEEEEECCC-----
Q 011970 233 KISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN----- 302 (474)
Q Consensus 233 afSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~--h~~~v~~V~F~~~~~~~ll~~--~~D~tIkIWDv~t----- 302 (474)
+|+| |.+++++. ..+..+.+|+..+++++..+.. +.+....+.|..+..+...+. +.|+.+.+|+...
T Consensus 213 ~~~~~g~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 213 GWDSSHRYFMTAA--NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EECTTSCEEEEEE--TTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred eECCCCcEEEeee--ecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence 9997 55555553 3467899999999999988873 334445666654444444443 3688999988654
Q ss_pred --CceEEeccccCCceEEEEEcCCCcEEE-------EEc-CCcEEEEeCC-CcEEEEecc------CCCCcCCCCeeEEE
Q 011970 303 --AELMEVSRTEFMTPSAFIFLYENQLFL-------TFR-NRTVAVWNFR-GELVTSFED------HLLWHPDCNTNNIY 365 (474)
Q Consensus 303 --g~~~~~l~~h~~~v~sv~Fspdg~lla-------S~s-D~tIklWd~~-G~ll~tl~g------H~~~~~~~~v~sva 365 (474)
+++..++.+|...|++++|+|||+.|+ +++ |+||+|||++ |+++.++.. |.... -.|..++
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~--~rv~~~~ 368 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA--KRVVQPE 368 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC--CCEEEEE
T ss_pred ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC--ccEEEEE
Confidence 478889999999999999999999999 456 8999999994 887766532 22111 1268899
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 366 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 366 fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|||||++|...+.+ ..+.|++|+|||..|+|.++.|+++.
T Consensus 369 fSpDGk~i~vs~~~------~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 369 YNKRGDEVWFSVWN------GKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp ECSSSSEEEEEECC------CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred ECCCCCEEEEEEec------CCCCCCeEEEEECCCCeEEEEECCCC
Confidence 99999977433221 13458999999999999999999875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=2.8e-29 Score=237.42 Aligned_cols=291 Identities=9% Similarity=-0.004 Sum_probs=216.7
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
+++|++++.|++|.+||++|++.+.++...+.....+|+|+|||+.|..+. ..+ ..+.+||+.+|+....+
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---~~~------~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEE---CCC------CcEEEEeCccCeeeeee
Confidence 899999999999999999999999999865556688999999999875433 345 68999999999874432
Q ss_pred ceeee--ccccCceEEEEeCCCCeEEEEec------------CCCcEEEeecCCCeEEEEEc----CCcEEEEEEcCCce
Q 011970 178 ALFES--ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS----DKHVQEIKISPGIM 239 (474)
Q Consensus 178 ~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s------------~D~tiKlWdl~tg~~l~tl~----~~~V~~vafSpg~~ 239 (474)
..-.. .....|..++|+ |||+.|..++ .+..+++||..+++....+. ...+..+.+++++.
T Consensus 79 ~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 21111 123346689998 7999887654 58889999999887654332 34567788888887
Q ss_pred EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEE
Q 011970 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSA 318 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~s 318 (474)
+++++ ..+.+|++.+++.+.++..+ .....+.|+ |++..+.+. ..++++.+++. .
T Consensus 158 ~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~ 213 (346)
T d1jmxb_ 158 LYVAG-----PDIYKMDVKTGKYTVALPLR-NWNRKGYSA-PDVLYFWPHQSPRHEFSMLYT-----------------I 213 (346)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECST-TCCCTTBCC-CBCCCCCCCCCTTCEEEEEEE-----------------E
T ss_pred EEEeC-----CcceEEEccCCCEEEEEecC-CCccceEEe-ccccEEEEEecCCCceEeeee-----------------e
Confidence 77652 45899999999999999855 344556665 455555554 45666666652 2
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCC-CcEE-EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFR-GELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~-G~ll-~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
..+.++...++++. +.++.+||.. ++.. ..+.+|... +..++++|++.++++.. ++.|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------------~~~v~v 276 (346)
T d1jmxb_ 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL-----YFTGLRSPKDPNQIYGV------------LNRLAK 276 (346)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC-----EEEEEECSSCTTEEEEE------------ESEEEE
T ss_pred eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce-----eEEEEEeCCCCEEEEec------------CCeEEE
Confidence 23445566666776 8899999995 7654 456666654 67899999999998765 578999
Q ss_pred EeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 396 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
||+.+|+++..+.... .+++|+|||||++||+|+.|++|++||.
T Consensus 277 ~d~~~~~~~~~~~~~~-----------------------------------~~~~va~s~DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 277 YDLKQRKLIKAANLDH-----------------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp EETTTTEEEEEEECSS-----------------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred EECCCCcEEEEEcCCC-----------------------------------CEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 9999999999886432 6789999999999999999999999983
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=8.4e-29 Score=236.05 Aligned_cols=284 Identities=8% Similarity=0.034 Sum_probs=198.0
Q ss_pred ccccEEEEEee--ccEEEEeeCCC--eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dg--tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|...|.++.|+ |+.|++++.+. ++++|+.++|+... +.. |...|.+++|+|||+.|++++ .+ ..
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~-~~~~v~~~~~spdg~~l~~~~----~~------~~ 108 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEE-NLGNVFAMGVDRNGKFAVVAN----DR------FE 108 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCC-CCCSEEEEEECTTSSEEEEEE----TT------SE
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeC-CCceEEeeeecccccccceec----cc------cc
Confidence 67778888888 88887766553 89999999777664 454 668899999999999999865 44 58
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEe----------cCCCcEEEeecCCCeEEEEEc-CCcEEE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS----------AQDSIYKVFDLKNYTMLYSIS-DKHVQE 231 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~----------s~D~tiKlWdl~tg~~l~tl~-~~~V~~ 231 (474)
+.+|++..+++.. ++.. +...+..++|+ |||++||++ ..++++++||++++++..... ...+..
T Consensus 109 ~~~~~~~~~~~~~---~~~~-~~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~ 183 (360)
T d1k32a3 109 IMTVDLETGKPTV---IERS-REAMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183 (360)
T ss_dssp EEEEETTTCCEEE---EEEC-SSSCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred cccccccccceee---eeec-ccccccchhhc-cceeeeeeeccccccceeeccccceeeeccccCceeeeccccccccc
Confidence 8999998888633 2322 23445579998 799999964 456789999999988765543 467899
Q ss_pred EEEcCC-ceEEEEecCCCCccEEEEecCCCeEE-------EEEeecCcceeEEEEEecCCCeEEEEeCC---Cc--EEEE
Q 011970 232 IKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL-------KVFYHLLHRNKKVDFIEQFNEKLLVKQEN---EN--LQIL 298 (474)
Q Consensus 232 vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L-------~tl~~h~~~v~~V~F~~~~~~~ll~~~~D---~t--IkIW 298 (474)
++|||+ ..|++. +.|..+++||....... ..+..|......+.|+ +++..+..+..+ .. +..+
T Consensus 184 ~~~spdg~~l~~~---s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~ 259 (360)
T d1k32a3 184 PAFDADSKNLYYL---SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYDLNDMYKRSSPI 259 (360)
T ss_dssp EEECTTSCEEEEE---ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC-CGGGSCCCCCCCCTTGGGGCEEC
T ss_pred ccccCCCCEEEEE---eCCCceEcccccccceeeccccceEEEecccCccccceEC-CCcCcccccceeecccccceeec
Confidence 999985 455544 44788999998765432 2233333333334443 333333333322 12 3344
Q ss_pred ECCCCceEEeccccCCceEEEE---EcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 299 DVRNAELMEVSRTEFMTPSAFI---FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 299 Dv~tg~~~~~l~~h~~~v~sv~---Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
++..++.... ..+...+..+. +++++.++++++ |++|++||+++..+..+.+| |.+++|||||++|+
T Consensus 260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------v~~~~~SpDG~~l~ 330 (360)
T d1k32a3 260 NVDPGDYRMI-IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN--------LTDLRLSADRKTVM 330 (360)
T ss_dssp SCCCBCEEEE-EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEE--------EEEEEECTTSCEEE
T ss_pred ccCcCceeEe-eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCC--------cCEEEECCCCCEEE
Confidence 5555554332 23333344444 445566788888 99999999974444555544 68999999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+++. ||+|++||+.+|+...++.-+-
T Consensus 331 ~~~~-----------Dg~i~v~d~~~~~~~~~~~~d~ 356 (360)
T d1k32a3 331 VRKD-----------DGKIYTFPLEKPEDERTVETDK 356 (360)
T ss_dssp EEET-----------TSCEEEEESSCTTSCEECCCCS
T ss_pred EEEC-----------CCeEEEEECCCCCcceEEEecc
Confidence 9886 9999999999999999887654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=7.1e-27 Score=219.96 Aligned_cols=262 Identities=10% Similarity=0.080 Sum_probs=194.6
Q ss_pred CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeE
Q 011970 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTM 220 (474)
Q Consensus 142 ~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~ 220 (474)
++|++++ .| .++.|||+.++++...+++-.. ...|..++|+ |||++| ++++.|++|.+||+++|++
T Consensus 2 ~~~vt~~----~d------~~v~v~D~~s~~~~~~i~~~~~--~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~ 68 (337)
T d1pbyb_ 2 DYILAPA----RP------DKLVVIDTEKMAVDKVITIADA--GPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGET 68 (337)
T ss_dssp EEEEEEE----TT------TEEEEEETTTTEEEEEEECTTC--TTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred eEEEEEc----CC------CEEEEEECCCCeEEEEEECCCC--CCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcE
Confidence 3678766 44 5999999999998664443222 3456789998 799986 6788899999999999999
Q ss_pred EEEEcC-------CcEEEEEEcCC-ceEEEEecC---------CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 221 LYSISD-------KHVQEIKISPG-IMLLIFNRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 221 l~tl~~-------~~V~~vafSpg-~~la~~s~~---------s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
+.++.. ..+..++|||+ ..++++... ..+..+.+||..++++++++..+ ..+..++|+ +++
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s-~dg 146 (337)
T d1pbyb_ 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWA-RDG 146 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEEC-TTS
T ss_pred EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEc-CCC
Confidence 988752 23457999984 455444321 13567899999999999999854 457788987 678
Q ss_pred CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc------------------------EEEEEc-CCcEEE
Q 011970 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ------------------------LFLTFR-NRTVAV 338 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~------------------------llaS~s-D~tIkl 338 (474)
.++++++. .+.+||+.++++......+.. .....++|++. .+.... ++.+.+
T Consensus 147 ~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (337)
T d1pbyb_ 147 SKLYGLGR--DLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp SCEEEESS--SEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred CEEEEEcC--CcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence 88888764 478899999998876544321 11122333332 222233 557999
Q ss_pred EeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 339 WNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 339 Wd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
||.. |++.. .+..|... +..++++|++.+++++ |++|++||+.+++++.++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~----- 280 (337)
T d1pbyb_ 224 MDLETGEMAMREVRIMDVF-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPLPH----- 280 (337)
T ss_dssp EETTTCCEEEEEEEECSSC-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEECSS-----
T ss_pred EEcCCCcEEEEEecCCCcc-----eEEEEecccceEEEEc-------------cccEEEEECCCCcEEEEEcCCC-----
Confidence 9995 87655 45555554 5789999999999875 7899999999999999985432
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+.+++|||||+.||+|+.|++|+|||.
T Consensus 281 ------------------------------~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 281 ------------------------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ------------------------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ------------------------------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 6789999999999999999999999983
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=8.8e-27 Score=238.78 Aligned_cols=295 Identities=7% Similarity=-0.007 Sum_probs=198.5
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccce--eeEee--cCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLN--VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~--l~~l~--g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.|..|+|+ |++|++++.||++++||+.|++. +..+. .+|...+.+++|||||++|+.++ ..+ .++
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~---~~~------~~v 133 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA---YWP------PQY 133 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE---EET------TEE
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc---CCC------CeE
Confidence 46667777 99999999999999999998874 33333 23667888999999999885433 244 689
Q ss_pred EEeEeccCCCCCccceeee-------ccccCceEEEEeCCCCeE-EEEecCCCcEEEeecCCCeEEE--EEc-CCcEEEE
Q 011970 164 KIEYIRRGKPDSGFALFES-------ESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLY--SIS-DKHVQEI 232 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~-------~~~~~~~~V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~--tl~-~~~V~~v 232 (474)
+|||..+|++...++.... ..-..+.+|.|| |+|+. +++.+.+++|.+||..+++.+. ++. +..+..+
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~ 212 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEeCccccceeeeccCCccccceeccCCCceeEEEEC-CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence 9999999997543322111 012234468998 57765 4677788999999999887554 454 5678999
Q ss_pred EEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeec---CcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCc--
Q 011970 233 KISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHL---LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAE-- 304 (474)
Q Consensus 233 afSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h---~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~-- 304 (474)
+|+|++. +++++. .+..|.+||.++++.+..+... .+......|..+..+...+.. .|++|.+|+.....
T Consensus 213 ~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~ 290 (432)
T d1qksa2 213 GLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290 (432)
T ss_dssp EECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred eECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc
Confidence 9998554 555543 3568999999999998887631 122233444434444444433 47888888765432
Q ss_pred -----eEEecc-------------------------ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccC
Q 011970 305 -----LMEVSR-------------------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 352 (474)
Q Consensus 305 -----~~~~l~-------------------------~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH 352 (474)
...... .|.....++++ ||++.|++++ |+++|+||+ ++.. +.+|
T Consensus 291 ~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~ 366 (432)
T d1qksa2 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEG 366 (432)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSS
T ss_pred ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCC
Confidence 111111 11111123333 7777777777 888888876 3432 2345
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
... |..++|||||++|+..+.++. ..|+.|+|||..|+|+++.+++..
T Consensus 367 ~~~-----v~~~~fS~DG~~v~~S~~~~~------~~~g~i~i~D~~T~k~~~~i~~~~ 414 (432)
T d1qksa2 367 QPR-----VVQGEFNKDGTEVWFSVWNGK------DQESALVVVDDKTLELKHVIKDER 414 (432)
T ss_dssp CCE-----EEEEEECTTSSEEEEEEECCT------TSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCc-----EEEeEECCCCCEEEEEEecCC------CCCCcEEEEECCCceEEeEecCCC
Confidence 554 678999999998866553211 237899999999999999998753
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=7.1e-23 Score=198.41 Aligned_cols=304 Identities=8% Similarity=-0.095 Sum_probs=207.7
Q ss_pred ccCCCCCcccccccccccccEEEEEeeccEEEEe-----eCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEE
Q 011970 71 THDPKGHCPFVLPFLMKRTKVIEIVAARDIVFAL-----AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLI 145 (474)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~-----s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Li 145 (474)
.++.|.....+.|+ |..++.. +..+.+.+||.+||+.+.+++++. . ..++|||||++|+
T Consensus 18 ~~~~p~~~~a~spd-------------g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~--~~~a~SpDG~~l~ 81 (373)
T d2madh_ 18 AADGPTNDEAPGAD-------------GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L--PNPVAAHSGSEFA 81 (373)
T ss_pred cCCCCccccccCCC-------------CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-C--ccEEEcCCCCEEE
Confidence 45666666666777 7766553 344679999999999999998733 3 4799999999999
Q ss_pred EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeec---cccCceEEEEeCCCCeEEEEe--cCCCcEEEeecCCCeE
Q 011970 146 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTM 220 (474)
Q Consensus 146 s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~--s~D~tiKlWdl~tg~~ 220 (474)
.++.....-...-.-..+.+||..++++...+.+.... ....+..+.|+ +||+.+... ..+..+.+|+..+++.
T Consensus 82 va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE-eCCCcEEEEEEcCCCceEEeeccCCeE
Confidence 88754322222223368999999999975432221110 12234568998 799876544 4577899999988776
Q ss_pred EEEEcCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCc----ceeEEEEEecCCCeEEEEeCCCcE
Q 011970 221 LYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH----RNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 221 l~tl~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~----~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
+.... ....++|+|++ .+.++ .+.|+++.+|+..++++..+...+.. ......+....++.++..+.++++
T Consensus 161 ~~~~~--~~~~~~~s~~g~~~~v~--~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (373)
T d2madh_ 161 DQLLS--SPTCYHIHPGAPSTFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI 236 (373)
T ss_pred EEEec--cceeEEEecCCCcEEEE--EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceE
Confidence 65543 45678999744 33333 25589999999999999887764322 112222222334566777899999
Q ss_pred EEEECCCCceEE--eccccCC----------ceEEEEEcCCCcEE----------EEEc-CCcEEEEeC-CCcEEEEecc
Q 011970 296 QILDVRNAELME--VSRTEFM----------TPSAFIFLYENQLF----------LTFR-NRTVAVWNF-RGELVTSFED 351 (474)
Q Consensus 296 kIWDv~tg~~~~--~l~~h~~----------~v~sv~Fspdg~ll----------aS~s-D~tIklWd~-~G~ll~tl~g 351 (474)
.+|+..+++... ....+.. ....++++|++..+ ++.. +++|.+||. +|+.+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~ 316 (373)
T d2madh_ 237 LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred EEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC
Confidence 999998876432 2222221 22334555555543 4445 788999999 5999998874
Q ss_pred CCCCcCCCCeeEEEECCCCCE--EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 352 HLLWHPDCNTNNIYITSDQDL--IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~--LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
.. . +..++|||||+. +++++. |++|++||+.||+.++++.+|..
T Consensus 317 ~~-~-----~~~~a~spDG~~~l~vt~~~-----------d~~v~v~D~~tg~~~~~~~~~g~ 362 (373)
T d2madh_ 317 GH-D-----VDAISVAQDGGPDLYALSAG-----------TEVLHIYDAGAGDQDQSTVELGS 362 (373)
T ss_pred CC-C-----eeEEEECCCCCEEEEEEeCC-----------CCeEEEEECCCCCEEEEECCCCC
Confidence 33 2 578999999994 456554 99999999999999999998875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.4e-22 Score=196.29 Aligned_cols=293 Identities=8% Similarity=-0.001 Sum_probs=203.6
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA- 205 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s- 205 (474)
.++..+.+++++|||+.++.... ++.+ ....+.+||..+|+.... +. ......++|| |||++|+.++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~-~~~~----~~~~v~v~D~~tg~~~~~---~~---~~~~~~~a~S-pDG~~l~va~~ 85 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLP-AHHS----AIIQQWVLDAGSGSILGH---VN---GGFLPNPVAA-HSGSEFALAST 85 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcc-cccC----CCceEEEEECCCCCEEEE---Ee---CCCCccEEEc-CCCCEEEEEee
Confidence 36678999999999999866432 1111 013677889999997442 11 2223369998 7999999875
Q ss_pred ---------CCCcEEEeecCCCeEEEEEcC--Cc-------EEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 206 ---------QDSIYKVFDLKNYTMLYSISD--KH-------VQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 206 ---------~D~tiKlWdl~tg~~l~tl~~--~~-------V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
.|++|+|||+.+++++..+.. .. ...++|+|+ ..+++.. ...+..+.+|+..+++.+...
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~~~~~~~~~~~~~~~~~ 164 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ-FAAGPAVGLVVQGGSSDDQLL 164 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE-EcCCCceEEeeccCCeEEEEe
Confidence 468899999999999887752 21 245888874 4444443 244678999999988877665
Q ss_pred eecCcceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCceEEeccc------cCCceEEEEEcCCCcEEEEEcCCcEEEE
Q 011970 267 YHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRT------EFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~l-l~~~~D~tIkIWDv~tg~~~~~l~~------h~~~v~sv~Fspdg~llaS~sD~tIklW 339 (474)
. ....+.|+ +++..+ ++.+.|+++.+||..++++...... +......+.+++++.+++.+.++++.+|
T Consensus 165 ~----~~~~~~~s-~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 239 (373)
T d2madh_ 165 S----SPTCYHIH-PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQA 239 (373)
T ss_pred c----cceeEEEe-cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEE
Confidence 4 34567777 455555 4568999999999999998765433 2233455677888877766669999999
Q ss_pred eCC-CcE--EEEeccCCCCc------CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 340 NFR-GEL--VTSFEDHLLWH------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 340 d~~-G~l--l~tl~gH~~~~------~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+.. ++. +.++..+.... +. ....++++||+..++.... +.........+++|.+||+.+|+.++.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~ 317 (373)
T d2madh_ 240 DISAAGATNKAPIDALSGGRKADTWRPG-GWQQVAYLKSSDGIYLLTS-EQSAWKLHAAAKEVTSVTGLVGQTSSQISLG 317 (373)
T ss_pred EcCCCeEEEEEeeccccCcEEeeeeccC-cceeeEEecCCCeEEEecC-CCceEEeecCCCeEEEEECCCCcEEEEecCC
Confidence 985 442 33444333211 11 1245788888887775432 1111233455789999999999999998643
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE--EEEEcCCCcEEEccC
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWSN 474 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~--LaSgs~DgtVklWd~ 474 (474)
. .+.+++|||||+. +++++.|++|+|||.
T Consensus 318 ~-----------------------------------~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 318 H-----------------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred C-----------------------------------CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 3 6889999999995 478999999999984
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2.5e-22 Score=192.24 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=195.1
Q ss_pred ccEEEEe-----eCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 98 RDIVFAL-----AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 98 ~~~las~-----s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
+..++.. +.+.++.+||..+|+.+.++..+. +..++|||||++|+.++.....-...-+-..+++||..+|+
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 6666553 456789999999999999998633 34799999999998776432111011112689999999999
Q ss_pred CCCccceeeec---cccCceEEEEeCCCCeEEEEe--cCCCcEEEeecCCCeEEEEEcCC---------cEEEEEEcCCc
Q 011970 173 PDSGFALFESE---SLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDK---------HVQEIKISPGI 238 (474)
Q Consensus 173 ~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~--s~D~tiKlWdl~tg~~l~tl~~~---------~V~~vafSpg~ 238 (474)
+...+.+.... ....+..++|+ |||+.+..+ +.+..+.+||+.+++.+.++... ....++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 168 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 168 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCC
Confidence 75533322211 12335578998 799876654 46789999999999988877632 22346677643
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccccC---
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF--- 313 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~--- 313 (474)
..+.... ..+.++.+++.++.+. .+...+..+.+. +++..++..+.++++.+||+.+++.... ..+|.
T Consensus 169 ~~~~v~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (355)
T d2bbkh_ 169 SLAKVAF-GTEGTPEITHTEVFHP-----EDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241 (355)
T ss_dssp CEEEEEC-CSSSCCEEEECCCCSC-----TTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred CEEEEEe-cCCCeEEEEecccccc-----eecceeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence 3333221 2234555555544322 222334556665 4577888889999999999998875432 11111
Q ss_pred -------CceEEEEEcCCCcEEEEEc-C----------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC--E
Q 011970 314 -------MTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--L 372 (474)
Q Consensus 314 -------~~v~sv~Fspdg~llaS~s-D----------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~--~ 372 (474)
.....++++||+..+...+ + ++|.+||.. ++.+.+++.+.. +..++|||||+ +
T Consensus 242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~------~~~~a~spDG~~~l 315 (355)
T d2bbkh_ 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE------IDSINVSQDEKPLL 315 (355)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEE
T ss_pred EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC------EEEEEEcCCCCeEE
Confidence 2234588999998887654 3 379999995 999998875433 57899999998 4
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
+++++. |++|.+||+.||+.+++|.++..
T Consensus 316 ~v~~~~-----------d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 316 YALSTG-----------DKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp EEEETT-----------TTEEEEEETTTCCEEEEECCCCS
T ss_pred EEEECC-----------CCEEEEEECCCCCEEEEEeCcCC
Confidence 455543 99999999999999999987753
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.2e-21 Score=185.03 Aligned_cols=276 Identities=9% Similarity=0.037 Sum_probs=183.3
Q ss_pred EEEEeeCCCeEEeeeccccce---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 100 IVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~---l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
+++++++|++|++|++.++.. +.+++ +.+.+.+|+|||||++|..++ ..+ .++.+|++..++....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~---~~d------~~i~~~~i~~~~~~~~ 74 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGV---RPE------FRVLAYRIAPDDGALT 74 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEE---TTT------TEEEEEEECTTTCCEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEE---CCC------CeEEEEEEeCCCCcEE
Confidence 348888999999999876543 44444 457799999999999996543 345 6899999976654221
Q ss_pred cceeee-ccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEEc----CCcEEEEEEcCCce-EEEEecCCCC
Q 011970 177 FALFES-ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSIS----DKHVQEIKISPGIM-LLIFNRSSSH 249 (474)
Q Consensus 177 ~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~----~~~V~~vafSpg~~-la~~s~~s~D 249 (474)
+... .....|..++|+ |||++|+.++ .+++|++|+........... ...+.+++|+|++. ++..+ ..+
T Consensus 75 --~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~--~~~ 149 (333)
T d1ri6a_ 75 --FAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQ 149 (333)
T ss_dssp --EEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGG
T ss_pred --EeeecccCCCceEEEEc-CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccc--ccc
Confidence 1121 123346689998 7999988877 47899999988776543332 35688999998554 44443 235
Q ss_pred ccEEEEecCCCeEEEEEe------ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCc--e--EEe---c---ccc
Q 011970 250 VPLKILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE--L--MEV---S---RTE 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~------~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~--~--~~~---l---~~h 312 (474)
..|.+|+..+........ ........++|. +++..+... ...+...+|++.... . ... . ...
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence 679999987754332221 123445778887 455555554 467788888865432 1 111 1 123
Q ss_pred CCceEEEEEcCCCcEEEEE-c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 313 FMTPSAFIFLYENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~-s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
...+..++|+||++++... . ++++.+|++. ...+..+.++.... ...++++|||||++|+.++. .
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~a~spDGk~l~va~~----------~ 296 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQ----------K 296 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECT----------T
T ss_pred cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCC--CCeeEEEEeCCCCEEEEEEC----------C
Confidence 4567788999999877665 4 8899999984 33333333322110 01468999999999877643 3
Q ss_pred CCeEEEE--eCCCCeEE
Q 011970 390 AGSINVS--SILTGKCL 404 (474)
Q Consensus 390 DgtIklW--di~tG~cl 404 (474)
+++|+|| |.+||++-
T Consensus 297 ~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 297 SHHISVYEIVGEQGLLH 313 (333)
T ss_dssp TCEEEEEEEETTTTEEE
T ss_pred CCeEEEEEEECCCCcEE
Confidence 7999999 55788764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=8.6e-23 Score=192.48 Aligned_cols=279 Identities=8% Similarity=-0.040 Sum_probs=196.8
Q ss_pred EEEEEee--ccEE-EEeeCCCeEEeeeccccceeeEeecCCCc-----eEEEEEEeeCCCEEEEEEeecCCC--ccceee
Q 011970 91 VIEIVAA--RDIV-FALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDN--FSSLKC 160 (474)
Q Consensus 91 V~~i~~s--~~~l-as~s~dgtiklW~~~tg~~l~~l~g~~~~-----~i~sv~fspdg~~Lis~S~~~s~d--~s~Lk~ 160 (474)
+..|+|+ |+++ ++++.+++|.+||+.+++.+..+...... .+..++|||||+.|..++.+.... +....-
T Consensus 42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~ 121 (346)
T d1jmxb_ 42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121 (346)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred cceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCc
Confidence 3456666 7765 67778999999999999999888753221 356899999999988765322110 111112
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI- 238 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~- 238 (474)
..+.+|+..+|+........... ..+..+.++ ++|++++++ ..+.+||+.+++.+.++. ...+..++++|++
T Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (346)
T d1jmxb_ 122 PRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAA-DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195 (346)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECC--SSCCCEEEC-TTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred ceEEEEecccceeeeEEEeeecc--CceEEEEec-CCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEecccc
Confidence 56788898888875543333321 233357776 788887764 458999999999999887 4567788888743
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceE
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPS 317 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~ 317 (474)
.++.. ...+.++.+++... +.......+..+..+..+.+||+.+++.... ...|...+.
T Consensus 196 ~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (346)
T d1jmxb_ 196 YFWPH--QSPRHEFSMLYTIA------------------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255 (346)
T ss_dssp CCCCC--CCTTCEEEEEEEEE------------------EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred EEEEE--ecCCCceEeeeeee------------------eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeE
Confidence 33332 22344555544210 0112223334456788999999999987654 567888899
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 318 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 318 sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
.++++|++..++...+++|++||.. |+++..++-. .. +.+++|||||++|++++. |++|++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~-----~~~va~s~DG~~l~v~~~-----------d~~v~v~ 318 (346)
T d1jmxb_ 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD-HT-----YYCVAFDKKGDKLYLGGT-----------FNDLAVF 318 (346)
T ss_dssp EEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECS-SC-----CCEEEECSSSSCEEEESB-----------SSEEEEE
T ss_pred EEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCC-CC-----EEEEEEcCCCCEEEEEeC-----------CCcEEEE
Confidence 9999999999888887789999994 9999888632 22 579999999999999876 9999999
Q ss_pred eCCCCeEEEEecCCCC
Q 011970 397 SILTGKCLAKINATNC 412 (474)
Q Consensus 397 di~tG~cl~tl~gH~~ 412 (474)
|+.|+|++++++-+..
T Consensus 319 D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 319 NPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ETTTTEEEEEEECSSS
T ss_pred ECccCCEEEEEECCCC
Confidence 9999999999986553
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=7.8e-22 Score=188.82 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=187.5
Q ss_pred eEEEEEEeeCCCEEEEEEe-ecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----
Q 011970 131 VIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---- 205 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~-~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s---- 205 (474)
++.-.+.+|||+.+..+.. .+... .++.+||..+|++...+ . .+....++|| |||++|+..+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~------~~v~v~D~~tg~~~~~~---~---~g~~~~~a~S-pDg~~l~v~~~~~~ 69 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRVIGMI---D---GGFLPNPVVA-DDGSFIAHASTVFS 69 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEEEEEE---E---ECSSCEEEEC-TTSSCEEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCc------CeEEEEECCCCcEEEEE---E---CCCCCceEEc-CCCCEEEEEeCCCc
Confidence 3444577999999865321 11223 57889999999874421 1 2333479998 7999887543
Q ss_pred ------CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 206 ------QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 206 ------~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
.|++|++||+++++++.++.. .....++|||+ ..+++.+ .+.+..+.+|+.++|+.+.++..+
T Consensus 70 ~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 70 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ-FSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE-CSSSCEEEEEETTTTEEEEEEECC
T ss_pred cccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec-CCCCceeeeeecCCCcEeeEEecC
Confidence 488999999999999887641 22356899984 4455543 355778999999999999988743
Q ss_pred Ccc-------eeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 270 LHR-------NKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 270 ~~~-------v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
... ...+.|+ +++..+++. ..++++.+++..+.+ ..+...+...++++++..++.++ ++++.+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (355)
T d2bbkh_ 149 DCYHIFPTAPDTFFMHC-RDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222 (355)
T ss_dssp SEEEEEEEETTEEEEEE-TTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred CcceEeecCCcceEEEc-CCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEe
Confidence 221 1223333 233333332 233444444433322 23344455567787777788877 99999999
Q ss_pred CC-CcE--EEEeccCCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 341 FR-GEL--VTSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 341 ~~-G~l--l~tl~gH~~------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+. ++. +...++|.. +.++ ....++++|||..++..+..... -.....+.+|.+||..+++.++++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~t~~~~~~~~~~~ 300 (355)
T d2bbkh_ 223 LSSGDAKFLPAVEALTEAERADGWRPG-GWQQVAYHRALDRIYLLVDQRDE-WRHKTASRFVVVLDAKTGERLAKFEMGH 300 (355)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEEC-SSSCEEEETTTTEEEEEEEECCT-TCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred cCCCcEEEEeccCCcccceEeeeeecc-ceEEEEEeCCCCeEEEEeccCCc-eeecCCCCeEEEEeCCCCcEEEEecCCC
Confidence 96 543 333433322 1111 12458999999998876542111 1222235689999999999999987544
Q ss_pred CCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC--EEEEEcCCCcEEEccC
Q 011970 412 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~--~LaSgs~DgtVklWd~ 474 (474)
.+++++|||||+ .+++++.|++|+|||.
T Consensus 301 -----------------------------------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 301 -----------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp -----------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred -----------------------------------CEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 688999999998 4578889999999983
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1e-20 Score=178.42 Aligned_cols=266 Identities=12% Similarity=0.110 Sum_probs=180.4
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEE----c-CCcEEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSI----S-DKHVQEIKI 234 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl----~-~~~V~~vaf 234 (474)
++|+||++........+..++ +-..|..++|| |||++| +++..|++|++|++.+.....++ . ...+..++|
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~ 90 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEE--CSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred CcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence 799999986543222112233 34567789998 799988 66667999999999765432222 1 356788999
Q ss_pred cCC-ceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEE---
Q 011970 235 SPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME--- 307 (474)
Q Consensus 235 Spg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~--- 307 (474)
||+ ..|++++ ..+.+|++|+.+.+....... .+...+..+.|+ +++.++++.+ .+..|.+|+..+.....
T Consensus 91 spDg~~l~v~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (333)
T d1ri6a_ 91 DHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVAQD 167 (333)
T ss_dssp CTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred cCCCCEEeecc--cCCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccceeeEEEeccCCcceeee
Confidence 985 5566553 346789999988877655443 455667788887 6677777765 67889999988754221
Q ss_pred ---eccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC--Cc---EEEEeccCCC-CcCCCCeeEEEECCCCCEEEEE
Q 011970 308 ---VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE---LVTSFEDHLL-WHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 308 ---~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G~---ll~tl~gH~~-~~~~~~v~svafSpDg~~LaS~ 376 (474)
....+...+..++|++++..+.... .+...+|+.. .. ...++..... .........++++|||+++...
T Consensus 168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~ 247 (333)
T d1ri6a_ 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247 (333)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence 2233456788999999999887764 7788888873 22 2222221110 0001124678999999988876
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCC
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE 456 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD 456 (474)
.. .++++.+|++....++.++.++.. . -..+++++||||
T Consensus 248 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------------------~~~p~~~a~spD 286 (333)
T d1ri6a_ 248 DR----------TASLITVFSVSEDGSVLSKEGFQP--T-----------------------------ETQPRGFNVDHS 286 (333)
T ss_dssp ET----------TTTEEEEEEECTTSCCEEEEEEEE--C-----------------------------SSSCCCEEECTT
T ss_pred cc----------cCCeEEEEEEcCCCCEEEEEEEeC--C-----------------------------CCCeeEEEEeCC
Confidence 53 378999999987766666655432 0 015667999999
Q ss_pred CCEEEEEc-CCCcEEEcc
Q 011970 457 RNEIYTGN-RHGLVHVWS 473 (474)
Q Consensus 457 g~~LaSgs-~DgtVklWd 473 (474)
|++|+.++ .+++|++|+
T Consensus 287 Gk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 287 GKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp SSEEEEECTTTCEEEEEE
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 99877664 679999995
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.3e-18 Score=170.47 Aligned_cols=284 Identities=6% Similarity=-0.065 Sum_probs=174.3
Q ss_pred EEEeeCCCeEE--eeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 101 VFALAHSGVCA--AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 101 las~s~dgtik--lW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
.+..+.+|+.+ +||..+|+.+.++.++. . ..++|+|||++|+.++.+++.-.+.=...++.+||..++++.+..+
T Consensus 37 ~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~ 113 (368)
T d1mdah_ 37 TLPAYFAGTTENWVSCAGCGVTLGHSLGAF-L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113 (368)
T ss_dssp EECTTTCSSEEEEEEETTTTEEEEEEEECT-T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred EeeccCCCcceEEEEeCCCCcEEEEEeCCC-C--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec
Confidence 34456677755 45999999999998754 3 3589999999999887654332222233789999999999755433
Q ss_pred eeee---ccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEE
Q 011970 179 LFES---ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 179 lf~~---~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkL 254 (474)
+-.. .....+..++|| |||++|+.+. .++++.+||+++++.+..+.......+.-.+...++. .+.|+++.+
T Consensus 114 ~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~Dg~~~~ 189 (368)
T d1mdah_ 114 LPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYL---GSCPASLAA 189 (368)
T ss_dssp ETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEEC---CCCTTSCEE
T ss_pred CCccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEE---EcCCCCEEE
Confidence 2111 012345679998 7999887765 5799999999999998877532111110011112221 133455555
Q ss_pred EecCCCeEEEEE------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--cccC----------Cce
Q 011970 255 LSIEDGTVLKVF------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEF----------MTP 316 (474)
Q Consensus 255 Wdi~tG~~L~tl------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~~h~----------~~v 316 (474)
|++.++...... ..+......+.+. + .+. +....++.+.++|+..++..... ..+. ...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 266 (368)
T d1mdah_ 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN-Y-PGM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCEEET-T-TTE-EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred EEecCCceeeeeeecccccccccceeecccc-c-CcE-EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence 555444332221 1222222334432 1 222 22233455556665554433221 1110 112
Q ss_pred EEEEEcCCCcEEEEEc--C--------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE--EEEEecCCCcc
Q 011970 317 SAFIFLYENQLFLTFR--N--------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKAEPED 383 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s--D--------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~--LaS~s~~~~~~ 383 (474)
..++++|++..+.... + .+|.+||.. |+++.++..+.. +.+++|||||+. +++++
T Consensus 267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~------~~~~a~spDG~~~ly~s~~------ 334 (368)
T d1mdah_ 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSA------ 334 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEET------
T ss_pred eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc------eeEEEECCCCCEEEEEEeC------
Confidence 3477898887765542 2 359999995 999998875432 578999999983 35543
Q ss_pred ccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 384 QWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 384 ~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.|++|++||..|||++++|+-..
T Consensus 335 -----~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 335 -----GTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp -----TTTEEEEEESSSCEEEEECCCCS
T ss_pred -----CCCeEEEEECCCCCEEEEEECCC
Confidence 38999999999999999998654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=2.2e-18 Score=168.96 Aligned_cols=287 Identities=10% Similarity=0.061 Sum_probs=188.8
Q ss_pred CceEEEEEEeeCCCEE-EEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec--
Q 011970 129 DEVIRSLFYNKNNDSL-ITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-- 205 (474)
Q Consensus 129 ~~~i~sv~fspdg~~L-is~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-- 205 (474)
.+....++..++|+.. ++...+.... ..+.++|..+|++... .+. .....++|+ |||++|+.++
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~------~~~~~~d~~~~~~~~~---~~~---~~~~~~a~s-pDg~~i~~~~~~ 85 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGT------TENWVSCAGCGVTLGH---SLG---AFLSLAVAG-HSGSDFALASTS 85 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSS------EEEEEEETTTTEEEEE---EEE---CTTCEEEEC-TTSSCEEEEEEE
T ss_pred CCCccccccCCCCcceeEEeeccCCCc------ceEEEEeCCCCcEEEE---EeC---CCCCcceEC-CCCCEEEEEccc
Confidence 3445666778999864 3333333333 4566678788876432 111 122268998 7999988754
Q ss_pred --------CCCcEEEeecCCCeEEEEEc--C-------CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 206 --------QDSIYKVFDLKNYTMLYSIS--D-------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 206 --------~D~tiKlWdl~tg~~l~tl~--~-------~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.|++|++||+.+++++..+. . .....++||| |.+|++++ ..+++|.+||+++++++.++.
T Consensus 86 ~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~--~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 86 FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL--FGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp ETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE--CSSSCEEEEEETTTEEEEEEE
T ss_pred CccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcEeEEee
Confidence 48899999999999988774 1 1234699998 55566554 336899999999999999987
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE------eccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~------~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
.+.... ..+......++.+.|+++..|++..+.... ....+...+..+.+.+++..+.+. ++.+.+.+.
T Consensus 164 ~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~ 238 (368)
T d1mdah_ 164 SASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDI 238 (368)
T ss_dssp CSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEEC
T ss_pred ccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEee
Confidence 543321 112223455556789999999887654322 233455566678889999877654 456667777
Q ss_pred C-CcEEE--EeccCCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 342 R-GELVT--SFEDHLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 342 ~-G~ll~--tl~gH~~------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
. ++... ...++.. +.+. ....++++|++..+...... ++........+|.+||..||++++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~v~~~~--~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~- 314 (368)
T d1mdah_ 239 PAAGATMKAAIDGNESGRKADNFRSA-GFQMVAKLKNTDGIMILTVE--HSRSCLAAAENTSSVTASVGQTSGPISNGH- 314 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEEC-SSSCEEEETTTTEEEEEEEE--CSSCTTSCEEEEEEEESSSCCEEECCEEEE-
T ss_pred cCCceEEEeecccccceeeeeeecCC-CceeEEEcCCCCEEEEEecC--CCceeecCCceEEEEECCCCcEeEEecCCC-
Confidence 5 33222 2222221 1111 12458999999988765431 111222234679999999999999886543
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE--EEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE--IYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~--LaSgs~DgtVklWd 473 (474)
.+.+++|||||+. +++++.|++|++||
T Consensus 315 ----------------------------------~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 315 ----------------------------------DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ----------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ----------------------------------ceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 6889999999983 46888999999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=2.9e-17 Score=166.03 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=84.8
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecC----CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
++++. ..|+.+.+||..||+....+.+. +...|.++.|||||+.|+.++... .-+..-.-..+.|||+.+|++
T Consensus 28 ~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~-~~~r~s~~~~~~l~d~~~~~~ 104 (470)
T d2bgra1 28 HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV-KQWRHSYTASYDIYDLNKRQL 104 (470)
T ss_dssp SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE-ECSSSCEEEEEEEEETTTTEE
T ss_pred CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc-ceeeeccCceEEEEECCCCcc
Confidence 55554 46889999999999988766642 235699999999999999877432 112233336788999999886
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 223 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t 223 (474)
.. +-. +-..+..++|| |||+.||+. .|+.+.+|++.+|+....
T Consensus 105 ~~---l~~--~~~~~~~~~~S-PDG~~ia~~-~~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 105 IT---EER--IPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp CC---SSC--CCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred cc---ccc--CCccccccccc-cCcceeeEe-ecccceEEECCCCceeee
Confidence 22 222 23445689998 799999996 477899999999986653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.72 E-value=9.1e-17 Score=162.35 Aligned_cols=295 Identities=8% Similarity=0.054 Sum_probs=169.4
Q ss_pred ccEEEEEee--ccEEEEee---------CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 89 TKVIEIVAA--RDIVFALA---------HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s---------~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
..|.++.|| |+.||..+ .++.+.|||+++|+ +..+.+ +.+.+..+.|||||+.||.++ +
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~-~~~~~~~~~~SPDG~~ia~~~----~---- 131 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEER-IPNNTQWVTWSPVGHKLAYVW----N---- 131 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSC-CCTTEEEEEECSSTTCEEEEE----T----
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-cccccc-CCccccccccccCcceeeEee----c----
Confidence 345555565 88888774 46788999999877 456776 567899999999999999854 3
Q ss_pred eeeeEEEEeEeccCCCCCccc------eee--------eccccCceEEEEeCCCCeEEEEecCCCc-EE-----------
Q 011970 158 LKCRSTKIEYIRRGKPDSGFA------LFE--------SESLKWPGFVEFDDVNGKVLTYSAQDSI-YK----------- 211 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~~~------lf~--------~~~~~~~~~V~Fs~~nGk~LaS~s~D~t-iK----------- 211 (474)
..+.+|+...|+..+-.. .+. .+.......+.|| |||+.||+...|.+ ++
T Consensus 132 ---~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d~~~v~~~~~~~~~~~~ 207 (470)
T d2bgra1 132 ---NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES 207 (470)
T ss_dssp ---TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT
T ss_pred ---ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC-CCCCccceeEecCCcCceEEEEeeccCC
Confidence 477888888887522100 111 0112333457898 79999999876544 33
Q ss_pred ------------------------EeecCCCeEEEEEc-------------CCcEEEEEEcCCceEEEE--ecCCCCccE
Q 011970 212 ------------------------VFDLKNYTMLYSIS-------------DKHVQEIKISPGIMLLIF--NRSSSHVPL 252 (474)
Q Consensus 212 ------------------------lWdl~tg~~l~tl~-------------~~~V~~vafSpg~~la~~--s~~s~D~tI 252 (474)
+||+.++....... +..+..+.+++++.++.. ........+
T Consensus 208 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~ 287 (470)
T d2bgra1 208 LQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM 287 (470)
T ss_dssp CSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred CCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEE
Confidence 33433332111000 123456777754444332 222222344
Q ss_pred EEE--ecCCCeEEEEEe------ecCc-----ceeEEEEEecCCCeEEE-EeCCCcEEEE--ECCCCceEEeccccCCce
Q 011970 253 KIL--SIEDGTVLKVFY------HLLH-----RNKKVDFIEQFNEKLLV-KQENENLQIL--DVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 253 kLW--di~tG~~L~tl~------~h~~-----~v~~V~F~~~~~~~ll~-~~~D~tIkIW--Dv~tg~~~~~l~~h~~~v 316 (474)
.++ |..+|....... .... ......|....++.++. +..|+..+|| +...+++..+..|+ ..|
T Consensus 288 ~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~-~~v 366 (470)
T d2bgra1 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT-WEV 366 (470)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSS-SCE
T ss_pred EEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCC-eeE
Confidence 554 556776654321 0011 11223343333344443 5567665555 66666666555554 456
Q ss_pred EEEEEcCCCcEEEEEc--CCc---EEEEeC--C-CcEEEE----eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 317 SAFIFLYENQLFLTFR--NRT---VAVWNF--R-GELVTS----FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s--D~t---IklWd~--~-G~ll~t----l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
..+...+++.++.++. +.+ -.||-+ . +...+- +.+|... +.+++|||||++++-.+.
T Consensus 367 ~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~-----~~s~~fSpdgky~~~~~s------ 435 (470)
T d2bgra1 367 IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQ-----YYSVSFSKEAKYYQLRCS------ 435 (470)
T ss_dssp EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBC-----BEEEEECTTSSEEEEEEC------
T ss_pred EEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCC-----EEEEEECCCCCEEEEEec------
Confidence 6553222333334443 332 134443 3 233333 4456544 789999999999874442
Q ss_pred cccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 385 WMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+..+-.++||+..+|++++.|+.+.
T Consensus 436 --~~~~P~~~l~~~~~g~~v~~le~n~ 460 (470)
T d2bgra1 436 --GPGLPLYTLHSSVNDKGLRVLEDNS 460 (470)
T ss_dssp --SBSSCEEEEEETTTTEEEEEEECCH
T ss_pred --CCCCCeEEEEECCCCCEEEEEeccH
Confidence 2335679999999999999998654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.69 E-value=1.9e-17 Score=171.90 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=188.2
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
++|+.++|+|++|++.+++.|+++. .|||++.+. ++.++ .+.++. . .+.. ...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip----------Vfspd~~~g-----~g~~~-es~~vl-----~--~~~~----~~~ 66 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP----------VFNVDSATG-----WGITN-ESKEIL-----G--GDQQ----YLN 66 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC----------SSSBCTTTC-----TTTSH-HHHHHH-----C--SSSC----CSC
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE----------eEcCCCCEE-----EEECC-ccceEE-----e--cccc----ccc
Confidence 5788999999999999999999884 289998742 34444 222221 1 1111 011
Q ss_pred eeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCC------
Q 011970 181 ESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSH------ 249 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D------ 249 (474)
...|-.+..++.++ |||++| +....+..|.++|+.++++..++. ......++|+| |.++.++.....-
T Consensus 67 gd~hhP~~s~t~gt-pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 67 GDCHHPHISMTDGR-YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp CCBCCCEEEEETTE-EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred CcccCCCcceeccc-CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 11122223345566 799988 666789999999999999888664 56899999997 4433232211110
Q ss_pred ----------ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC----------------------------
Q 011970 250 ----------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE---------------------------- 291 (474)
Q Consensus 250 ----------~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~---------------------------- 291 (474)
..+..+|.++.+.+.+..-. .....++|+ |+++.+.+++.
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~ 223 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA 223 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred ccccccccccceEEeecCccceeeEEEecC-CCccceEEC-CCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence 13466899999888777643 345678886 66776666653
Q ss_pred -------------CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE-c-CCcEEEEeCCCcEEEEeccCCCCc
Q 011970 292 -------------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNFRGELVTSFEDHLLWH 356 (474)
Q Consensus 292 -------------D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~-s-D~tIklWd~~G~ll~tl~gH~~~~ 356 (474)
++.+.|++....+.+.+...+. .+..+.++|||+++..+ . |+||.|||++ ++.+.|+++...
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~-k~~~~~~~~~~~- 300 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAID-KLDDLFEDKIEL- 300 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGG-GHHHHTTTSSCG-
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEee-hhhhHhhccCCc-
Confidence 3566777766666666655443 57889999999987554 5 9999999974 111223333321
Q ss_pred CCC---------CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----------CeEEEEe-----cCCCC
Q 011970 357 PDC---------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKI-----NATNC 412 (474)
Q Consensus 357 ~~~---------~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t----------G~cl~tl-----~gH~~ 412 (474)
.+| .....+|.++|..+.|..- |..|..||+.. -..+.++ .||..
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~-----------ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~ 369 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFI-----------DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH 369 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE
T ss_pred ceEEEeecccccCcccceecCCceEEEcccc-----------cceEEEeccchhhhhhccCCCceeEeccccccCCCCCc
Confidence 011 1234689999998888765 99999999741 1244555 35543
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
.+.+.+|+|||++|+|++
T Consensus 370 ----------------------------------~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 370 ----------------------------------ASLTESRDADGKWLVVLS 387 (441)
T ss_dssp ----------------------------------ETTTTSTTCCCCEEEEEE
T ss_pred ----------------------------------cccccccCCCCcEEEecC
Confidence 566788999999999994
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.55 E-value=7e-12 Score=119.36 Aligned_cols=234 Identities=11% Similarity=0.220 Sum_probs=172.1
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--------CcEEEEEEcC--CceEEEEecCCCCccEE
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKISP--GIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--------~~V~~vafSp--g~~la~~s~~s~D~tIk 253 (474)
.+.+|..|+++ +||+++++....+.|++||. +|+++..+.. ..-..+++.+ +..+++. .+....|.
T Consensus 21 ~f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~i~ 96 (279)
T d1q7fa_ 21 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE--RSPTHQIQ 96 (279)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE--CGGGCEEE
T ss_pred eECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceec--cCCccccc
Confidence 36788899998 79999999888899999995 5888887741 1345677664 4444433 23345788
Q ss_pred EEecCCCeEEEEEee-cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEE
Q 011970 254 ILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 254 LWdi~tG~~L~tl~~-h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS 330 (474)
.++. +|+...++.. ....-..+++. +++..+++....+.+.++| .+|+++... ..+...+..+++.++|+++++
T Consensus 97 ~~~~-~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~ 173 (279)
T d1q7fa_ 97 IYNQ-YGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 173 (279)
T ss_dssp EECT-TSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred cccc-cccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEec-cCCceeecccccccccccceeeeccceeEEee
Confidence 8884 7888888752 33444667754 4444444456777888888 456666653 457788999999999999999
Q ss_pred Ec-CCcEEEEeCCCcEEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 331 FR-NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 331 ~s-D~tIklWd~~G~ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.. .+.|+++|.+|+.+.++. ++... -..|++.|+|+++++-+. .++.|.+++ .+|+.+.++
T Consensus 174 d~~~~~V~~~d~~G~~~~~~g~~g~~~~-----P~giavD~~G~i~Vad~~----------~~~~v~~f~-~~G~~~~~~ 237 (279)
T d1q7fa_ 174 DNRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH----------NNFNLTIFT-QDGQLISAL 237 (279)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS----------SSCEEEEEC-TTSCEEEEE
T ss_pred eccccceeeeecCCceeeeecccccccC-----CcccccccCCeEEEEECC----------CCcEEEEEC-CCCCEEEEE
Confidence 88 999999999999999884 23322 378999999999987432 256899999 689999998
Q ss_pred cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 408 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 408 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..... ....+.|+++|||+.++ ++.++.|++|+
T Consensus 238 ~~~~~--------------------------------~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 238 ESKVK--------------------------------HAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp EESSC--------------------------------CSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred eCCCC--------------------------------CCCEeEEEEeCCCcEEE-EeCCCeEEEEE
Confidence 65432 01567899999998655 55789999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=3.2e-14 Score=147.38 Aligned_cols=280 Identities=9% Similarity=-0.047 Sum_probs=177.4
Q ss_pred ecccCCCCCcccccccccccccEEEEEeeccEE-EEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEE
Q 011970 69 YDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIV-FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITV 147 (474)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~l-as~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~ 147 (474)
.|+|.|......+.|+ |+.| ++...+.+|.++|++|+++...+.-.+......++|+|||+++-.+
T Consensus 67 gd~hhP~~s~t~gtpD-------------Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 67 GDCHHPHISMTDGRYD-------------GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp CCBCCCEEEEETTEEE-------------EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred CcccCCCcceecccCC-------------CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 4677776655556666 7777 4556889999999999999887764345678999999999965332
Q ss_pred EeecCCCc----------cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-cEEEeecC
Q 011970 148 SVYASDNF----------SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLK 216 (474)
Q Consensus 148 S~~~s~d~----------s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~-tiKlWdl~ 216 (474)
.. +.+.. ..-+...+...|..+.+. +++-.--..+..++|+ |||+++...+.+. .+-.++..
T Consensus 134 ~~-~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-----~~qI~v~~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~ 206 (441)
T d1qnia2 134 CN-AEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-----AWQVIVDGNLDNTDAD-YTGKYATSTCYNSERAVDLAGT 206 (441)
T ss_dssp EE-ECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHH
T ss_pred ec-cCCcccccCcccccccccccceEEeecCcccee-----eEEEecCCCccceEEC-CCCCEEEEEecCCCceEEEecc
Confidence 21 11110 001123334455444443 2222111235579998 7999888777553 34444544
Q ss_pred CCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCc
Q 011970 217 NYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENEN 294 (474)
Q Consensus 217 tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~t 294 (474)
+.+....+. .++-..++++|++..+.. ++++.+.|++..+.+.++++... ..-..|+++ |||++++++ ..|.|
T Consensus 207 t~~~~d~i~v~n~p~~~~~~~dGk~~~v---~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vS-PDGkyl~~~~~~~~t 281 (441)
T d1qnia2 207 MRNDRDWVVVFNVERIAAAVKAGNFKTI---GDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTS-PDGKYFIANGKLSPT 281 (441)
T ss_dssp TCSSBCEEEEEEHHHHHHHHHTTCCBCC---TTCCCCEEECSSSCSSEEEECCB-SSCCCEEEC-TTSCEEEEECTTSSB
T ss_pred CcceEEEEEeCCccceEEEecCCCEEEe---CCCCcEEEEcccCCceEEEEeCC-CCccCceEC-CCCCEEEEeCCcCCc
Confidence 544333332 112223556765544433 33567888888877888888743 223568876 788888775 58999
Q ss_pred EEEEECCCCceE--------Eecccc---CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-------C----cEEEEe--
Q 011970 295 LQILDVRNAELM--------EVSRTE---FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-------G----ELVTSF-- 349 (474)
Q Consensus 295 IkIWDv~tg~~~--------~~l~~h---~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-------G----~ll~tl-- 349 (474)
|.+||+++-+.. .+..++ .-.+.-..|.++|+.+.|.. |.+|..|++. | ..+..+
T Consensus 282 vsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v 361 (441)
T d1qnia2 282 VSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDV 361 (441)
T ss_dssp EEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC
T ss_pred EEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccc
Confidence 999998763210 001111 11233357999999999988 9999999962 2 244555
Q ss_pred ---ccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 350 ---EDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 350 ---~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.||... +.+..|+|||++|+|+|+
T Consensus 362 ~y~~GH~~~-----~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 362 QYQPGHNHA-----SLTESRDADGKWLVVLSK 388 (441)
T ss_dssp SSCEEEEEE-----TTTTSTTCCCCEEEEEES
T ss_pred ccCCCCCcc-----ccccccCCCCcEEEecCc
Confidence 577654 578889999999999987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.38 E-value=2.5e-10 Score=108.29 Aligned_cols=237 Identities=11% Similarity=0.212 Sum_probs=166.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee--eccccCceEEEEeCCCCeEEE-EecCCC
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLT-YSAQDS 208 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~--~~~~~~~~~V~Fs~~nGk~La-S~s~D~ 208 (474)
-+.|+++|+|+.+++ |. .+ +.|++++ ..|++...+.-.. ......|..+++.+..|..++ ..+.++
T Consensus 25 P~gvavd~dg~i~Va---D~-~n------~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVA---DT-NN------HRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 93 (279)
T ss_dssp EEEEEECTTCCEEEE---EG-GG------TEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred ccEEEEcCCCCEEEE---EC-CC------CEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCcc
Confidence 478999999996654 22 33 5788888 6677633221111 112445777887754555554 455667
Q ss_pred cEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCC
Q 011970 209 IYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFN 283 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~ 283 (474)
.|++++. +|+...++.. .....+++.+++.+++... ....+.+++ .+|+.+.++. .+......+++. + +
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~--~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d-~-~ 167 (279)
T d1q7fa_ 94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVEC--KVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVN-D-K 167 (279)
T ss_dssp EEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEET--TTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEEC-S-S
T ss_pred ccccccc-cccceeecCCCcccccceeccccCCcEEEEee--ccceeeEec-cCCceeecccccccccccceeeec-c-c
Confidence 8888885 6787777752 5678999998666666643 245677888 4789998885 334455677764 3 3
Q ss_pred CeEEEE-eCCCcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCCCcEEEEeccCCCCcCC
Q 011970 284 EKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPD 358 (474)
Q Consensus 284 ~~ll~~-~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~G~ll~tl~gH~~~~~~ 358 (474)
+.+.++ ...+.|+++|. +|+.+..+ .++...+..+++.|+|+++++-+ ++.|.+++.+|+++.++.......
T Consensus 168 g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~-- 244 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA-- 244 (279)
T ss_dssp SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS--
T ss_pred eeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCC--
Confidence 455554 67899999995 67776664 35777899999999999999865 558999999999999987554321
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.-..|++.|||+++++ +. +.+|++|..++.
T Consensus 245 -~p~~vav~~dG~l~V~-~~-----------n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 245 -QCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 274 (279)
T ss_dssp -CEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred -CEeEEEEeCCCcEEEE-eC-----------CCeEEEEEeeee
Confidence 1478999999998775 33 889999998654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.4e-09 Score=99.74 Aligned_cols=236 Identities=8% Similarity=0.050 Sum_probs=138.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+-+-|.. |.....|.- ..+.+.+-+|||||+.||-++..... ..+.+.+...+.. ..... ....+
T Consensus 20 ~l~i~d~d-G~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~-------~~~~~~~~~~~~~----~~~~~-~~~~~ 85 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGR-------SALVIQTLANGAV----RQVAS-FPRHN 85 (269)
T ss_dssp EEEEEETT-SCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSS-------CEEEEEETTTCCE----EEEEC-CSSCE
T ss_pred EEEEEcCC-CCCcEEEec-CCCceeeeEECCCCCEEEEEEeeccC-------cceeeeecccCce----eEEee-eeccc
Confidence 46666765 666666654 35778999999999999987643322 2333334344332 11222 23455
Q ss_pred eEEEEeCCCCeEEEEecCC-CcEEEeecC--CCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEE
Q 011970 189 GFVEFDDVNGKVLTYSAQD-SIYKVFDLK--NYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D-~tiKlWdl~--tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
....|| |||+.|+..+.+ +...++... ......... ........+++ +..++..+...+...|.+.++.++...
T Consensus 86 ~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~ 164 (269)
T d2hqsa1 86 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ 164 (269)
T ss_dssp EEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred ccceec-CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce
Confidence 578898 799999876642 222233322 222222222 23444556664 444444333333446777888776543
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-CCCcEE--EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc----CCcE
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTV 336 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIk--IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s----D~tI 336 (474)
. +..+........++ |++..++..+ .++... +.|..++....+ . +........|||||+.||-.+ ...|
T Consensus 165 ~-~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 165 R-ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-S-STFLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp E-CCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCEEEC-C-CSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred e-eecccccccccccc-cccceeEEEeecCCceeeeEeecccccceEe-e-cCccccceEECCCCCEEEEEEcCCCCcEE
Confidence 3 33333455666766 6777777754 444444 446555554333 2 334556778999999987544 3478
Q ss_pred EEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 337 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 337 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.+|+++|...+.|.....- +...+|||
T Consensus 241 ~~~~~dg~~~~~lt~~~g~-----~~~p~WSP 267 (269)
T d2hqsa1 241 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 267 (269)
T ss_dssp EEEETTSCCEEECCCSSSE-----EEEEEECC
T ss_pred EEEECCCCCEEEEeCCCCc-----EEeEEeCC
Confidence 8999987766777765543 56788888
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=8.3e-09 Score=94.48 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=124.5
Q ss_pred cCceEEEEeCCCCeEEEEecCCC---cEEEeecCCCeEE-EEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTML-YSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~---tiKlWdl~tg~~l-~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
..+.+-+|| |||+.||..+.+. .+-+-+..++... .+.....+....||| |..++......+...+..+.....
T Consensus 39 ~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~ 117 (269)
T d2hqsa1 39 QPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 117 (269)
T ss_dssp SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccc
Confidence 445578998 8999999876543 3555566666643 333456788999998 455554443322223444444444
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCc
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT 335 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~t 335 (474)
.......+. .......++ ++++.++..+ .++ .|.+.++.++...+. ..+........++|||+.++..+ ++.
T Consensus 118 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~ 194 (269)
T d2hqsa1 118 QIRQVTDGR-SNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQ 194 (269)
T ss_dssp CEEECCCCS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred cceeeeecc-ccccccccc-cccccceecccccCCceEeeeecccccceee-ecccccccccccccccceeEEEeecCCc
Confidence 444433322 223334444 5566555543 444 455667766655444 33445666778999999999876 445
Q ss_pred EEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 336 VAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 336 IklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
..+|.. .+...+.+.+ ... .....|||||+.||-.+. .+....|.++++..+ ....|....
T Consensus 195 ~~i~~~~~~~~~~~~~~~-~~~-----~~~p~~SPDG~~i~f~s~--------~~~~~~l~~~~~dg~-~~~~lt~~~ 257 (269)
T d2hqsa1 195 QHIAKQDLATGGVQVLSS-TFL-----DETPSLAPNGTMVIYSSS--------QGMGSVLNLVSTDGR-FKARLPATD 257 (269)
T ss_dssp EEEEEEETTTCCEEECCC-SSS-----CEEEEECTTSSEEEEEEE--------ETTEEEEEEEETTSC-CEEECCCSS
T ss_pred eeeeEeecccccceEeec-Ccc-----ccceEECCCCCEEEEEEc--------CCCCcEEEEEECCCC-CEEEEeCCC
Confidence 555554 4444444433 333 367899999999986554 233567999998654 455666654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.19 E-value=3.7e-09 Score=99.06 Aligned_cols=224 Identities=10% Similarity=0.082 Sum_probs=146.3
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKl 212 (474)
.+|++.+||...++.. +... . +..+..++... ..+.......|..|+|+ ++|.+.++....+.+++
T Consensus 17 ~~vavd~dG~i~v~~~--~~~~-------~--i~~~~~~~~~~--~~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSE--GMYG-------R--VVKLATGSTGT--TVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp EEEEECTTCCEEEEEC--SSSC-------E--EEEEC----CE--EECCCCSCCSCCCEEEC-TTCCEEEEETTTEEEEE
T ss_pred CEEEEcCCCCEEEEEc--CCCC-------E--EEEEcCCCceE--EEeccCCccCceEEEEc-CCCCEEEeeeeeceeee
Confidence 7999999999665421 2222 2 22223333211 12222234567789998 79999999999999999
Q ss_pred eecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEe
Q 011970 213 FDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 213 Wdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
++-.++..+.... ......|++.+++.+...... ...+...+..+ ..+..+. .-......+++. +++..+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~~-~~g~~~v~~~ 158 (260)
T d1rwia_ 83 AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG--NNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT 158 (260)
T ss_dssp CTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGG--GTEEEEECTTC-SSCEECCCCSCCSCCEEEEC-TTCCEEEEEG
T ss_pred eeeccceeeeeeeeeeecccccccccceeEeeccc--ccccccccccc-ceeeeeeecccCCcceeeec-CCCCEeeecc
Confidence 8876666554444 356899999986666665432 33466666543 3333332 122344678875 4555545556
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
.++.|..+|............+...+..++|.++|+++++-. ++.|..++..+.....+..-.... -.+|+|.+|
T Consensus 159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~----P~~i~~d~~ 234 (260)
T d1rwia_ 159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT----PLAVAVDSD 234 (260)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCC----EEEEEECTT
T ss_pred ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCC----eEEEEEeCC
Confidence 788899999876665555557778899999999999999988 888888888766555553322211 368999999
Q ss_pred CCEEEEEec
Q 011970 370 QDLIISYCK 378 (474)
Q Consensus 370 g~~LaS~s~ 378 (474)
|.++++-..
T Consensus 235 g~l~vad~~ 243 (260)
T d1rwia_ 235 RTVYVADRG 243 (260)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEEECC
Confidence 999887443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=4.3e-09 Score=98.60 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=151.4
Q ss_pred ccCceEEEEeCCCCeEEE-EecCCCcEEEeecCC-CeEEEEEcC-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKN-YTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~La-S~s~D~tiKlWdl~t-g~~l~tl~~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
...|..|+++ +||.+.+ ..+..+.+..++..+ +.......+ ..-..|+++|++.+.++. .....|++++-.++.
T Consensus 13 ~~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d--~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 13 RLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTD--FNNRVVTLAAGSNNQ 89 (260)
T ss_dssp CCCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEE--TTTEEEEECTTCSCC
T ss_pred cCCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEee--eeeceeeeeeeccce
Confidence 3467899998 7999655 455667676666432 222222222 356789999866666664 335678888877766
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
.+..+.+. .....|++. +++ .+.+. ..+..+...+................+..+++.|+|+++++.. ++.|..+
T Consensus 90 ~~~~~~~~-~~p~~iavd-~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 90 TVLPFDGL-NYPEGLAVD-TQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp EECCCCSC-CSEEEEEEC-TTC-CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred eeeeeeee-eeccccccc-ccc-eeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence 65544432 445778875 344 45554 4666777777666554444344456788999999999999887 8899999
Q ss_pred eCCCcEEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 340 NFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 340 d~~G~ll~tl~-gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|.+|..+..+. ..... -+.|+|.|+|++.++... .+.|...+.. +.....+..-.
T Consensus 167 d~~~~~~~~~~~~~~~~-----p~gi~~d~~g~l~vsd~~-----------~~~i~~~~~~-~~~~~~~~~~~------- 222 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAG-STTSTVLPFTG------- 222 (260)
T ss_dssp CTTTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TTEEEEECTT-CSCCEECCCCS-------
T ss_pred ccccceeeeeeccccCC-----CccceeeeeeeeeeeecC-----------CCEEEEEeCC-CCeEEEEccCC-------
Confidence 99877666654 33332 378999999999998654 6777777643 33222221111
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
+...++|+|++||+++++-..++.|+.
T Consensus 223 --------------------------~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 223 --------------------------LNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp --------------------------CCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred --------------------------CCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 125678999999999888777777653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.14 E-value=1.8e-08 Score=96.14 Aligned_cols=225 Identities=9% Similarity=0.042 Sum_probs=141.3
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCC--CeEE
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED--GTVL 263 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t--G~~L 263 (474)
.|+..++++ |||.++++...+++|..||.........-....+..++|+|++.+.++... +..+.+|+... |+..
T Consensus 28 ~~~e~iAv~-pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~--~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN--ADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEEC--TTSCEEEEEECTTSCEE
T ss_pred CCcCCEEEC-CCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecC--CceEEEEEeccccccee
Confidence 478889998 799999999999999999954332322223578999999986555555322 34566665443 3332
Q ss_pred EEEe-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec----------cccCCceEEEEEcCCCcEEEEE
Q 011970 264 KVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS----------RTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 264 ~tl~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l----------~~h~~~v~sv~Fspdg~llaS~ 331 (474)
.... ........+++. + ++.+.++ ..++.+..+|..++.....+ ......+..+.+.. +.++.+.
T Consensus 105 ~~~~~~~~~~~n~i~~~-~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~ 181 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPL-S-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSN 181 (302)
T ss_dssp EEEECTTCSCEEEEEES-S-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEE
T ss_pred eccccCCccccceeEEc-c-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeeec
Confidence 2222 123445677764 3 4556655 67888888998887643221 11223455666654 4455566
Q ss_pred c-CCcEEEEeCC--CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 332 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 332 s-D~tIklWd~~--G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+ ++.|..++.. +.. ...+..... ..+++|.+||.+.++... +++|..++. +|+....
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~------pdgia~d~dG~l~va~~~-----------~~~V~~i~p-~G~~~~~ 243 (302)
T d2p4oa1 182 TEKMLLLRIPVDSTDKPGEPEIFVEQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTII 243 (302)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEE
T ss_pred CCCCeEEeccccccccccccccccCCCC------CcceEECCCCCEEEEEcC-----------CCcEEEECC-CCCEEEE
Confidence 6 8888888874 221 122222222 257999999998887543 788988885 5765444
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE---cCCCCEEEEEcCC
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY---DEERNEIYTGNRH 466 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf---SpDg~~LaSgs~D 466 (474)
...... +...++|+| +||+++||-++..
T Consensus 244 ~~~~~~--------------------------------~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 244 AQAEQG--------------------------------VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECGGGT--------------------------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EecCCC--------------------------------CCCceEEEEcCCCCCCCEEEEECCC
Confidence 332221 126899999 8899999865543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=3.9e-08 Score=96.93 Aligned_cols=257 Identities=11% Similarity=0.040 Sum_probs=144.3
Q ss_pred eeeccccce--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccCc
Q 011970 112 AFSRETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 112 lW~~~tg~~--l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~~ 188 (474)
.||.++|++ +........+.+.-|+|+|||++|-.++ .+ .+..+.+ ..+.... +-....-..|
T Consensus 20 ~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~----~~-------~~~~~~i~~~~~~~~---~~~~~~~~~p 85 (365)
T d1jofa_ 20 QFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTEIVH---EASHPIGGHP 85 (365)
T ss_dssp EEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTEEEE---EEEEECCSSG
T ss_pred EEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe----CC-------cEEEEEEeCCCCeEE---EeeecCCCCc
Confidence 355555543 2222222234455699999999987654 12 2233333 2333211 1111112345
Q ss_pred eEEEEeCCCCe--EEEEec-CCCcEEEeecC-CCeEE--EEE-------------c---CCcEEEEEEcCCce-EEEEec
Q 011970 189 GFVEFDDVNGK--VLTYSA-QDSIYKVFDLK-NYTML--YSI-------------S---DKHVQEIKISPGIM-LLIFNR 245 (474)
Q Consensus 189 ~~V~Fs~~nGk--~LaS~s-~D~tiKlWdl~-tg~~l--~tl-------------~---~~~V~~vafSpg~~-la~~s~ 245 (474)
..++|+ +||+ +|+++. ..++|-.+.+. .+... ..+ . ...+..++|+|++. +++.+.
T Consensus 86 ~~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~ 164 (365)
T d1jofa_ 86 RANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEC-CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC
Confidence 678887 7888 344432 23445444332 11111 111 0 13578999998554 555532
Q ss_pred CCCCccEEEEecC-CCeEEE--EEe--ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec----------
Q 011970 246 SSSHVPLKILSIE-DGTVLK--VFY--HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS---------- 309 (474)
Q Consensus 246 ~s~D~tIkLWdi~-tG~~L~--tl~--~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l---------- 309 (474)
+ ...|.++++. +|+... .+. .....-+.++|+ |++..+.+. ..+++|.+||+..+....+.
T Consensus 165 -g-~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~ 241 (365)
T d1jofa_ 165 -T-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp -T-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred -C-CCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence 3 3467777654 454432 222 123456889997 667766565 47899999998776532211
Q ss_pred ---------cccCCceEEEEEcCCCcEEEEEc--CCc-----EEEEeCC--CcEEEEec-----cCCCCcCCCCeeEEEE
Q 011970 310 ---------RTEFMTPSAFIFLYENQLFLTFR--NRT-----VAVWNFR--GELVTSFE-----DHLLWHPDCNTNNIYI 366 (474)
Q Consensus 310 ---------~~h~~~v~sv~Fspdg~llaS~s--D~t-----IklWd~~--G~ll~tl~-----gH~~~~~~~~v~svaf 366 (474)
..+...+..++|+|||++|.++. +.+ |..+++. |.+..... ....+ -+.++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-----p~~i~~ 316 (365)
T d1jofa_ 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-----SNAVSP 316 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-----CCCEEE
T ss_pred cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-----ccEEEe
Confidence 12233567889999999887763 444 7777773 55433222 11222 367999
Q ss_pred CC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 367 TS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 367 Sp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
+| ||++|+.+.. .+++|.+|++...
T Consensus 317 ~p~~G~~l~va~~----------~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 317 CPWSDEWMAITDD----------QEGWLEIYRWKDE 342 (365)
T ss_dssp CTTCTTEEEEECS----------SSCEEEEEEEETT
T ss_pred cCCCCCEEEEEeC----------CCCeEEEEEEeCC
Confidence 98 8998887653 4899999987433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=2.1e-08 Score=95.70 Aligned_cols=232 Identities=13% Similarity=0.052 Sum_probs=149.9
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
.|.+.++.. ..++.+++++|||..+++. ..+ ++|..++ +.|+.. .++.. ...+..++|+ +|
T Consensus 18 ~~v~~~~p~--~~~~e~iAv~pdG~l~vt~----~~~------~~I~~i~-p~g~~~---~~~~~--~~~~~gla~~-~d 78 (302)
T d2p4oa1 18 AKIITSFPV--NTFLENLASAPDGTIFVTN----HEV------GEIVSIT-PDGNQQ---IHATV--EGKVSGLAFT-SN 78 (302)
T ss_dssp EEEEEEECT--TCCEEEEEECTTSCEEEEE----TTT------TEEEEEC-TTCCEE---EEEEC--SSEEEEEEEC-TT
T ss_pred ccEEEECCC--CCCcCCEEECCCCCEEEEe----CCC------CEEEEEe-CCCCEE---EEEcC--CCCcceEEEc-CC
Confidence 445555543 2368999999999988762 233 4554445 556631 22332 3567789998 79
Q ss_pred CeEEEEecCCCcEEEeecCCC--e--EEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee----
Q 011970 198 GKVLTYSAQDSIYKVFDLKNY--T--MLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---- 268 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg--~--~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~---- 268 (474)
|+++++...++.+.+|++.+. + .+.... ......+++.|++.+.++. +.+..|..+|..++.....+..
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 156 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD--SYRGAIWLIDVVQPSGSIWLEHPMLA 156 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE--TTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeec--cccccceeeeccCCcceeEecCCccc
Confidence 999999888888888887543 2 222333 3578999999877776664 4467788888888765433321
Q ss_pred ----c--CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEe--ccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 269 ----L--LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 269 ----h--~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~--l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
+ ......+.+ +++.+..+ ..++.|..+|+........ ...+...+..++|.+||+++++.. +++|..
T Consensus 157 ~~~~~~~~~~~ngi~~---~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 157 RSNSESVFPAANGLKR---FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp CSSTTCCSCSEEEEEE---ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred eeeccCcccccccccc---cCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEE
Confidence 1 112244444 35666665 5888888888776432211 112334567899999999999887 899999
Q ss_pred EeCCCcEEEEeccCCCCcCCCCeeEEEE---CCCCCEEEEE
Q 011970 339 WNFRGELVTSFEDHLLWHPDCNTNNIYI---TSDQDLIISY 376 (474)
Q Consensus 339 Wd~~G~ll~tl~gH~~~~~~~~v~svaf---SpDg~~LaS~ 376 (474)
++.+|+.....+..... -...+++| +||++.|.-.
T Consensus 234 i~p~G~~~~~~~~~~~~---~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 234 IAPDRSTTIIAQAEQGV---IGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp ECTTCCEEEEECGGGTC---TTEEEEEECCSTTTTTEEEEE
T ss_pred ECCCCCEEEEEecCCCC---CCceEEEEcCCCCCCCEEEEE
Confidence 99888865444322211 01579999 7899877543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.09 E-value=9.6e-09 Score=101.43 Aligned_cols=249 Identities=10% Similarity=0.058 Sum_probs=136.6
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEE--c-CCcEEEEEEcCCce-EEEEecCCCCccEEEEec-----
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI--S-DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSI----- 257 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl--~-~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi----- 257 (474)
+-+++|+ |+|++|..+. .+.+..|.+. ++..+... . +.....++++|++. +.+........+|..+.+
T Consensus 42 ~s~la~s-~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 42 ISWMTFD-HERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CSEEEEC-TTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCEEEEc-CCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence 3369998 7999887665 4567788765 34443322 1 23445677776543 111111111233333322
Q ss_pred -------C-CCeEEEEE----eecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC-CCceEEe----ccccCCceEEE
Q 011970 258 -------E-DGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEV----SRTEFMTPSAF 319 (474)
Q Consensus 258 -------~-tG~~L~tl----~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~-tg~~~~~----l~~h~~~v~sv 319 (474)
. +|..-... .....++..+.|+ |+|.++++.. ....|.+|++. ++.+... .......++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s-PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i 198 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred cceeEeeeecceecCcccCcccCCCCcceEEEEC-CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE
Confidence 1 11111111 1122356789997 7888888875 45678888754 4544322 22345689999
Q ss_pred EEcCCCcEEEEE-c-CCcEEEEeCC-Cc--EEEEeccCCCCc------------CCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 320 IFLYENQLFLTF-R-NRTVAVWNFR-GE--LVTSFEDHLLWH------------PDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 320 ~Fspdg~llaS~-s-D~tIklWd~~-G~--ll~tl~gH~~~~------------~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
+|+|||+++-.. . +++|.+|+.+ ++ .+.......... .......|+|+|||++|..+...+..
T Consensus 199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~ 278 (365)
T d1jofa_ 199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF 278 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred EECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence 999999987555 4 9999999985 33 332221111000 00013468999999999887541110
Q ss_pred cccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEE
Q 011970 383 DQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEI 460 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~L 460 (474)
.....|-.+++.. |.......-+..... -..-..++|+| ||++|
T Consensus 279 -----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----------------------------G~~p~~i~~~p~~G~~l 324 (365)
T d1jofa_ 279 -----ELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----------------------------GGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp -----TSCCEEEEEEECTTSCEEEEEEEEECSSC-----------------------------CTTCCCEEECTTCTTEE
T ss_pred -----ccceEEEEEEecCCCceeeEeEeeEEEcC-----------------------------CCCccEEEecCCCCCEE
Confidence 1133466666533 332221111110000 01345689998 89987
Q ss_pred EEE-cCCCcEEEcc
Q 011970 461 YTG-NRHGLVHVWS 473 (474)
Q Consensus 461 aSg-s~DgtVklWd 473 (474)
+.+ ..+++|.+|+
T Consensus 325 ~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 325 AITDDQEGWLEIYR 338 (365)
T ss_dssp EEECSSSCEEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 666 5779999996
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.92 E-value=5.7e-07 Score=86.76 Aligned_cols=228 Identities=10% Similarity=0.081 Sum_probs=145.4
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCc--cEEEEecCCCeEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHV--PLKILSIEDGTVLK 264 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~--tIkLWdi~tG~~L~ 264 (474)
..++|+ ++|.+..+....+.|.-||.++++....+. ......++|+|++.|+++....... .|...+..+++...
T Consensus 43 EG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 43 EGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp EEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred EeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence 468997 799988888889999999988877655543 3568899999866666654332222 34444555555444
Q ss_pred EEeec--CcceeEEEEEecCCCeEEEEeCC-------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcE-EEEEc-C
Q 011970 265 VFYHL--LHRNKKVDFIEQFNEKLLVKQEN-------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-N 333 (474)
Q Consensus 265 tl~~h--~~~v~~V~F~~~~~~~ll~~~~D-------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l-laS~s-D 333 (474)
..... ......+.+. ++| .+.++..+ +.+..++...+.. +.+......+..++|+||++. +++-+ .
T Consensus 122 ~~~~~~~~~~~nd~~~d-~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFD-SKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EECSSSSCCCEEEEEEC-TTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eccCCCcccCCcceeEE-ecc-ceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecccC
Confidence 33321 2234567764 444 45554321 2355555444443 333334557889999999974 56666 8
Q ss_pred CcEEEEeCC--CcEEEEec--------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 334 RTVAVWNFR--GELVTSFE--------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 334 ~tIklWd~~--G~ll~tl~--------gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
+.|..++++ |....... ++.. -..+++.++|++.++... .+.|..+| .+|+.
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~------PdGl~vD~~G~l~Va~~~-----------~g~V~~~~-p~G~~ 260 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEG------PDSCCIDSDDNLYVAMYG-----------QGRVLVFN-KRGYP 260 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSE------EEEEEEBTTCCEEEEEET-----------TTEEEEEC-TTSCE
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccc------eeeeeEcCCCCEEEEEcC-----------CCEEEEEC-CCCcE
Confidence 999999874 54433221 1211 147999999998887654 79999999 58999
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
+.++.--...+ -....+++++|.|++..|+....|
T Consensus 261 l~~i~~P~~~~----------------------------~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 261 IGQILIPGRDE----------------------------GHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEEECTTGGG----------------------------TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEeCCCcCC----------------------------CcCceeeeEEEeCCCCEEEEEcCC
Confidence 99885321000 000167899999999888776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.91 E-value=7.3e-07 Score=86.13 Aligned_cols=232 Identities=12% Similarity=0.118 Sum_probs=147.7
Q ss_pred cccCceEEEEeCCCCeEEEEecC-------CCcEEEeecCCCeEEEEEc------CCcEEEEEEcC-CceEEEEecCCCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS------DKHVQEIKISP-GIMLLIFNRSSSH 249 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~-------D~tiKlWdl~tg~~l~tl~------~~~V~~vafSp-g~~la~~s~~s~D 249 (474)
.+..+...+|+ +||+++.+... +++|..||.+++....... ...=..++|.| |..|.++.. .
T Consensus 16 ~~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~ 91 (314)
T d1pjxa_ 16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---R 91 (314)
T ss_dssp CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---T
T ss_pred CCCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---C
Confidence 46678889997 79998876443 4678899999887544332 12345799997 456666532 2
Q ss_pred ccEEEEecCCCeEEEEEeec-----CcceeEEEEEecCCCeEEEEeC-------------CCcEEEEECC-CCceEEecc
Q 011970 250 VPLKILSIEDGTVLKVFYHL-----LHRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVR-NAELMEVSR 310 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h-----~~~v~~V~F~~~~~~~ll~~~~-------------D~tIkIWDv~-tg~~~~~l~ 310 (474)
..|...+..++ ....+... ......++|. ++|...++-.. ..+=+||-+. .|+..+..
T Consensus 92 ~~i~~~~~~g~-~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~- 168 (314)
T d1pjxa_ 92 LGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD- 168 (314)
T ss_dssp TEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE-
T ss_pred CeEEEEeCCCc-EEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee-
Confidence 45888887544 33333211 1123567775 44444443211 1122344333 45544442
Q ss_pred ccCCceEEEEEcCCCc-----EEEEEc-CCcEEEEeCC--CcEE-----EEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 311 TEFMTPSAFIFLYENQ-----LFLTFR-NRTVAVWNFR--GELV-----TSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~-----llaS~s-D~tIklWd~~--G~ll-----~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.+...+..++|+|++. ++++-+ .+.|..+|+. |.+. ..+.+.... .-..+++.++|++.++..
T Consensus 169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~----~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG----GADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC----EEEEEEEBTTCCEEEEEE
T ss_pred CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc----cceeeEEecCCcEEEEEc
Confidence 3455678899999874 677766 8888888873 5542 223222211 135799999999988754
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
. .+.|..+|..+|+.+.++..... ..++++|.||+
T Consensus 245 ~-----------~g~I~~~dp~~g~~~~~i~~p~~----------------------------------~~t~~afg~d~ 279 (314)
T d1pjxa_ 245 G-----------SSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFKPQT 279 (314)
T ss_dssp T-----------TTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEECTTS
T ss_pred C-----------CCEEEEEeCCCCEEEEEEECCCC----------------------------------CEEEEEEeCCC
Confidence 4 68899999888888888866542 78899999999
Q ss_pred CEE-EEEcCCCcEEE
Q 011970 458 NEI-YTGNRHGLVHV 471 (474)
Q Consensus 458 ~~L-aSgs~DgtVkl 471 (474)
++| +|.+..|+|.-
T Consensus 280 ~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 280 KTIFVTEHENNAVWK 294 (314)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEE
Confidence 865 56677787643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.91 E-value=1.7e-07 Score=85.32 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=130.7
Q ss_pred EEEeeC--CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC----CC
Q 011970 135 LFYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----DS 208 (474)
Q Consensus 135 v~fspd--g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~----D~ 208 (474)
++.||| |+.||.++ ++ .+.+.++..|+. .+|-.. -......+|| |||+.||..+. +.
T Consensus 4 ~~~sPdi~G~~v~f~~----~~-------dl~~~d~~~g~~---~~Lt~~--~~~~~~p~~S-PDG~~iaf~~~~~~~~~ 66 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC----CD-------DLWEHDLKSGST---RKIVSN--LGVINNARFF-PDGRKIAIRVMRGSSLN 66 (281)
T ss_dssp CCEEEEEETTEEEEEE----TT-------EEEEEETTTCCE---EEEECS--SSEEEEEEEC-TTSSEEEEEEEESTTCC
T ss_pred cccCCCCCCCEEEEEe----CC-------cEEEEECCCCCE---EEEecC--CCcccCEEEC-CCCCEEEEEEeeCCCCC
Confidence 356899 99998765 32 344557777775 123222 2344568998 89999997642 22
Q ss_pred --cEEEeecCCCeEEEEE-cC-------CcEEEEEEcCCceEEEEecCCC----CccEEEEecCCCeEEEEEeecCccee
Q 011970 209 --IYKVFDLKNYTMLYSI-SD-------KHVQEIKISPGIMLLIFNRSSS----HVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 209 --tiKlWdl~tg~~l~tl-~~-------~~V~~vafSpg~~la~~s~~s~----D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
.|-+.++.+|+..... .. ..+..++|||++..+.+..... ...+.+.+..+++...... ....
T Consensus 67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 143 (281)
T d1k32a2 67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPAT 143 (281)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCS
T ss_pred ceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cccc
Confidence 3666677777754321 11 2457789998555444433321 1236677877766544332 2222
Q ss_pred EEEEEecCCCeEEEEe-CC-----------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCC--cEEEEe
Q 011970 275 KVDFIEQFNEKLLVKQ-EN-----------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR--TVAVWN 340 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~-~D-----------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~--tIklWd 340 (474)
.+. . ++++.++... .+ ....+.....+........ ........++++..++++..++ .|-+.|
T Consensus 144 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 220 (281)
T d1k32a2 144 HIL-F-ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM-STHVSSPVIVGHRIYFITDIDGFGQIYSTD 220 (281)
T ss_dssp EEE-E-ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC-SSCCEEEEEETTEEEEEECTTSSCEEEEEE
T ss_pred eee-e-cCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC-ccccceeeeeccccceecccccccceEEEe
Confidence 333 2 3455555532 11 1223333333333333333 2344455566765544443333 566667
Q ss_pred CCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 341 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 341 ~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
++|+.++.+..+..+ ....|||||+.|+- .. ++.|.+.|+.+|+.-
T Consensus 221 ~~g~~~~~lt~~~~~------~~~~~SpDG~~I~f-~~-----------~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 221 LDGKDLRKHTSFTDY------YPRHLNTDGRRILF-SK-----------GGSIYIFNPDTEKIE 266 (281)
T ss_dssp TTSCSCEECCCCCSS------CEEEEEESSSCEEE-EE-----------TTEEEEECTTTCCEE
T ss_pred CCCCceEEeecCCCc------ccccCcCCCCEEEE-Ee-----------CCEEEEEECCCCCEE
Confidence 776666666665543 23569999999984 33 678999999888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.1e-07 Score=97.42 Aligned_cols=258 Identities=12% Similarity=0.069 Sum_probs=144.8
Q ss_pred eeCCCeEEeeeccccceeeEeecCC--CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee
Q 011970 104 LAHSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (474)
Q Consensus 104 ~s~dgtiklW~~~tg~~l~~l~g~~--~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~ 181 (474)
-..+|.+.+||..+|+.-..+.... ...+.+..|||||+.|+.+.... .-|.+-.-....|+|+.+|+.. +|..
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~-~~~r~s~~~~~~i~d~~~~~~~---~l~~ 108 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE-PIYQHSYTGYYVLSKIPHGDPQ---SLDP 108 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC-CCSSSCCCSEEEEEESSSCCCE---ECCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc-ceeEeeccccEEEEEccCCcee---eccC
Confidence 3467889999999988644444322 22467788999999987654211 1121112246678899888852 2222
Q ss_pred ec-cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcE-----------------EEEEEcCC-ce
Q 011970 182 SE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHV-----------------QEIKISPG-IM 239 (474)
Q Consensus 182 ~~-~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V-----------------~~vafSpg-~~ 239 (474)
.+ .-..+....|| |||+.||... ++.+.+.++.++...+...+ +.| .++-|||+ ..
T Consensus 109 ~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ 186 (465)
T d1xfda1 109 PEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR 186 (465)
T ss_dssp TTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred ccCCccccceeeec-cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCe
Confidence 11 11122357888 8999999986 56677888877765443321 122 36779984 45
Q ss_pred EEEEecCCC------------C-------------------ccEEEEecCCCeEEEE-Ee-----ecCcceeEEEEEecC
Q 011970 240 LLIFNRSSS------------H-------------------VPLKILSIEDGTVLKV-FY-----HLLHRNKKVDFIEQF 282 (474)
Q Consensus 240 la~~s~~s~------------D-------------------~tIkLWdi~tG~~L~t-l~-----~h~~~v~~V~F~~~~ 282 (474)
||....+.. + ..+.+.|++++..... +. ...+-+..+.|+ +
T Consensus 187 iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~- 264 (465)
T d1xfda1 187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-T- 264 (465)
T ss_dssp EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-S-
T ss_pred EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-C-
Confidence 554321100 0 1355667766643221 11 112234567775 4
Q ss_pred CCeEEEE--e---CCCcEEEEECCCCceEEeccccC-Cce----EEEEEcCCCcEE--EEEc--CCcEEEEe--------
Q 011970 283 NEKLLVK--Q---ENENLQILDVRNAELMEVSRTEF-MTP----SAFIFLYENQLF--LTFR--NRTVAVWN-------- 340 (474)
Q Consensus 283 ~~~ll~~--~---~D~tIkIWDv~tg~~~~~l~~h~-~~v----~sv~Fspdg~ll--aS~s--D~tIklWd-------- 340 (474)
++++++. . ....|.++|+.+|++..+...+. .+| ....|+|||+.+ +..+ ++.=.++.
T Consensus 265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~ 344 (465)
T d1xfda1 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (465)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence 4556654 2 22467889999999877654322 222 245799999853 2222 33222221
Q ss_pred -CCCcEEEEeccCCCCcCCCCeeEE-EECCCCCEEE
Q 011970 341 -FRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLII 374 (474)
Q Consensus 341 -~~G~ll~tl~gH~~~~~~~~v~sv-afSpDg~~La 374 (474)
..|+.++.|+ +..|. |..+ +|.++++.|.
T Consensus 345 ~~~~~~~~~LT-~G~w~----V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 345 NSSNDNIQSIT-SGDWD----VTKILAYDEKGNKIY 375 (465)
T ss_dssp CSSSCCCCBSC-CSSSC----EEEEEEEETTTTEEE
T ss_pred cCCCceeEEec-cCCce----EEEEEEEcCCCCEEE
Confidence 2344444454 34564 5554 6888887764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.70 E-value=1.3e-05 Score=76.86 Aligned_cols=225 Identities=10% Similarity=0.109 Sum_probs=138.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC--C
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--S 208 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D--~ 208 (474)
.+..++|.++|+..++ . -.. ..|.-++...++.. ..+. +....|..++|+ +||+++++...+ .
T Consensus 41 ~lEG~~~D~~G~Ly~~-D--~~~-------g~I~ri~p~g~~~~---~~~~-~~~~~p~gla~~-~dG~l~va~~~~~~~ 105 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLL-D--VFE-------GNIFKINPETKEIK---RPFV-SHKANPAAIKIH-KDGRLFVCYLGDFKS 105 (319)
T ss_dssp CEEEEEECTTSCEEEE-E--TTT-------CEEEEECTTTCCEE---EEEE-CSSSSEEEEEEC-TTSCEEEEECTTSSS
T ss_pred CcEeCEECCCCCEEEE-E--CCC-------CEEEEEECCCCeEE---EEEe-CCCCCeeEEEEC-CCCCEEEEecCCCcc
Confidence 3467889999985443 1 212 34444453333321 1121 224467789998 799988865432 3
Q ss_pred cEEEe--ecCCCeEEEEEc----CCcEEEEEEcCCceEEEEecCCC----CccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 209 IYKVF--DLKNYTMLYSIS----DKHVQEIKISPGIMLLIFNRSSS----HVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 209 tiKlW--dl~tg~~l~tl~----~~~V~~vafSpg~~la~~s~~s~----D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
...+. |..++....... .....++++.|++.+..+..... .+.+..++.. |+.+..+......-..++|
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~ 184 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIAL 184 (319)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEE
T ss_pred ceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeee
Confidence 33444 444444444333 24588999998666655532211 1235555543 4444444333344578998
Q ss_pred EecCCCeEEEE-eCCCcEEEEECCC-CceEEe-------ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEE
Q 011970 279 IEQFNEKLLVK-QENENLQILDVRN-AELMEV-------SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 348 (474)
Q Consensus 279 ~~~~~~~ll~~-~~D~tIkIWDv~t-g~~~~~-------l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~t 348 (474)
+ ++++.|.++ +..+.|..+|+.. +..... .......+..+++..+|++.++.. ++.|.++|-+|+++.+
T Consensus 185 s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~ 263 (319)
T d2dg1a1 185 S-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ 263 (319)
T ss_dssp C-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred c-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEE
Confidence 7 667777665 6789999999763 222211 122234577899999999999887 9999999999999988
Q ss_pred ec------cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 349 FE------DHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 349 l~------gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
+. +|... +.+++|.|+++.++...
T Consensus 264 i~~P~~~~~~~~~-----~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 264 ILIPGRDEGHMLR-----STHPQFIPGTNQLIICS 293 (319)
T ss_dssp EECTTGGGTCSCB-----CCEEEECTTSCEEEEEE
T ss_pred EeCCCcCCCcCce-----eeeEEEeCCCCEEEEEc
Confidence 75 33333 56899999988777654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.3e-06 Score=87.19 Aligned_cols=283 Identities=11% Similarity=0.090 Sum_probs=155.8
Q ss_pred eCCCeEEeeeccccceeeEeec--CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC----c--
Q 011970 105 AHSGVCAAFSRETNRRICFLNV--SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS----G-- 176 (474)
Q Consensus 105 s~dgtiklW~~~tg~~l~~l~g--~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~----~-- 176 (474)
|..+..-++|+.+|+.- .|.. .....+....|||||+.||-+. + ..+.+.+...|+..+ +
T Consensus 88 s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~iafv~----~-------~nl~~~~~~~~~~~~lt~~g~~ 155 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIF----E-------NNIYYCAHVGKQAIRVVSTGKE 155 (465)
T ss_dssp CCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEE----T-------TEEEEESSSSSCCEEEECCCBT
T ss_pred eccccEEEEEccCCcee-eccCccCCccccceeeeccCCceEEEEe----c-------ceEEEEecCCCceEEEecccCc
Confidence 44678888999987643 3322 1234566788999999998865 2 233333433333211 0
Q ss_pred cceee--------eccccCceEEEEeCCCCeEEEEecCC-C---------------------------------cEEEee
Q 011970 177 FALFE--------SESLKWPGFVEFDDVNGKVLTYSAQD-S---------------------------------IYKVFD 214 (474)
Q Consensus 177 ~~lf~--------~~~~~~~~~V~Fs~~nGk~LaS~s~D-~---------------------------------tiKlWd 214 (474)
..++. .+-......+-|| |||+.||....| . .+.|+|
T Consensus 156 ~~i~nG~~d~vyeee~~~~~~a~~WS-PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d 234 (465)
T d1xfda1 156 GVIYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (465)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred ceeeccccchhhhhhhccccceEEEC-CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEe
Confidence 00111 0111112356788 899999987532 2 234556
Q ss_pred cCCCeEEEE-Ec-------CCcEEEEEEcCCceEEEEecC--CCCccEEEEecCCCeEEEEEeec-Ccce----eEEEEE
Q 011970 215 LKNYTMLYS-IS-------DKHVQEIKISPGIMLLIFNRS--SSHVPLKILSIEDGTVLKVFYHL-LHRN----KKVDFI 279 (474)
Q Consensus 215 l~tg~~l~t-l~-------~~~V~~vafSpg~~la~~s~~--s~D~tIkLWdi~tG~~L~tl~~h-~~~v----~~V~F~ 279 (474)
++++..... +. +..+..+.++|++.+++.... .....|.++|..+|++...+... ..++ ....|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~ 314 (465)
T d1xfda1 235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS 314 (465)
T ss_dssp SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC
T ss_pred cCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEc
Confidence 555442211 11 123678999987776655333 22235888999999987766532 2222 234554
Q ss_pred ecCCCeEEE--Ee-CCC--cEEEEECC------CCceEEeccccCCceEEE-EEcCCCcEE-EEEc-CC--cEEEEeC--
Q 011970 280 EQFNEKLLV--KQ-ENE--NLQILDVR------NAELMEVSRTEFMTPSAF-IFLYENQLF-LTFR-NR--TVAVWNF-- 341 (474)
Q Consensus 280 ~~~~~~ll~--~~-~D~--tIkIWDv~------tg~~~~~l~~h~~~v~sv-~Fspdg~ll-aS~s-D~--tIklWd~-- 341 (474)
++|..++. .+ .++ .+...++. ++..++.+....-.|..+ +|..+++.+ .++. +. .-.||-+
T Consensus 315 -~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l 393 (465)
T d1xfda1 315 -KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (465)
T ss_dssp -TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred -cCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC
Confidence 56664432 22 333 33333321 233333344334455665 588776554 3554 32 2335554
Q ss_pred CCc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 342 RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 342 ~G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+|. ..+.+.... ..+|...++.|||||++++-.|. .+ .--.+.|++..+|+.+..|+...
T Consensus 394 ~g~~~~~~lt~~~--~~~~~~~~~~~S~~~~y~v~~~s-~~-------~~P~~~~~~~~~~~~~~~Le~N~ 454 (465)
T d1xfda1 394 VGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCE-GP-------GVPMVTVHNTTDKKKMFDLETNE 454 (465)
T ss_dssp STTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECC-SS-------SSCCEEEEETTTCCEEEEEECCH
T ss_pred CCCCcceeecccc--CCCCCEEEEEECCCCCEEEEEee-cC-------CCCeEEEEECCCCCEEEEEcCCH
Confidence 333 222122111 12355679999999999996653 12 23468899999999999997643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=2.5e-05 Score=70.40 Aligned_cols=232 Identities=8% Similarity=0.043 Sum_probs=128.4
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|+.||-.+. |-+-+.|+.+|+. ..|.. +.+.+.+.+|||||+.||.++...+.+ ....+.+.+...|+..+ +
T Consensus 12 G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~----~~~~i~~~~~~~g~~~~-l 83 (281)
T d1k32a2 12 GDRIIFVCC-DDLWEHDLKSGST-RKIVS-NLGVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENGEIKR-I 83 (281)
T ss_dssp TTEEEEEET-TEEEEEETTTCCE-EEEEC-SSSEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTTEEEE-C
T ss_pred CCEEEEEeC-CcEEEEECCCCCE-EEEec-CCCcccCEEECCCCCEEEEEEeeCCCC----CceEEEEEEecCCceEE-e
Confidence 555554443 3355558886664 45664 457789999999999999876544333 12234455555665411 0
Q ss_pred ceee---eccccCceEEEEeCCCCeEEEEecC------CCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCC
Q 011970 178 ALFE---SESLKWPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 178 ~lf~---~~~~~~~~~V~Fs~~nGk~LaS~s~------D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~ 248 (474)
.... .........++|+ |||+.|++... ...+.+.+...+.... ........+.+.++...+.......
T Consensus 84 t~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (281)
T d1k32a2 84 TYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFADGRRVIGRNTFEL 161 (281)
T ss_dssp CCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEETTEEEEEESCSCC
T ss_pred eecCCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeEE-ecCCccceeeecCCCeEEEeecccc
Confidence 0000 0112344568898 79999998643 3345566665555432 2223333455556666555432211
Q ss_pred ---------CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-C--CCcEEEEECCCCceEEeccccCCce
Q 011970 249 ---------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 249 ---------D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~--D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
.....+.....+........ ......+.+. ++.++... . ...|-++|+.+++..++.......+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~ 237 (281)
T d1k32a2 162 PHWKGYRGGTRGKIWIEVNSGAFKKIVDM-STHVSSPVIV---GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP 237 (281)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECC-SSCCEEEEEE---TTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE
T ss_pred ceeeeeccCCcceeeeeccccceeeccCC-ccccceeeee---ccccceecccccccceEEEeCCCCceEEeecCCCccc
Confidence 11223333333333333322 2333444433 34555533 3 4456677988888766544333333
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEeCC-CcE
Q 011970 317 SAFIFLYENQLFLTFRNRTVAVWNFR-GEL 345 (474)
Q Consensus 317 ~sv~Fspdg~llaS~sD~tIklWd~~-G~l 345 (474)
..|||||+.|+-..++.|.++|++ |+.
T Consensus 238 --~~~SpDG~~I~f~~~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 238 --RHLNTDGRRILFSKGGSIYIFNPDTEKI 265 (281)
T ss_dssp --EEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred --ccCcCCCCEEEEEeCCEEEEEECCCCCE
Confidence 358999999886668889999996 553
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.64 E-value=5.3e-06 Score=79.90 Aligned_cols=242 Identities=12% Similarity=0.063 Sum_probs=145.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee----ccccCceEEEEeCCCCeEEEEecCC
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~----~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
...++|.|||+.+++... ......+-.++..++...|+. ..+.. .....|..++|+ +||..|..+...
T Consensus 20 ~EGpa~d~dG~ly~~~~~---~~~~~~~~g~I~r~d~~~~~~----~~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~~ 91 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPE---VEVNGKPAGEILRIDLKTGKK----TVICKPEVNGYGGIPAGCQCD-RDANQLFVADMR 91 (314)
T ss_dssp CEEEEECTTSCEEEEETT---CEETTEECCEEEEECTTTCCE----EEEECCEETTEECCEEEEEEC-SSSSEEEEEETT
T ss_pred CeEeEEeCCCCEEEEECc---cccccccCCEEEEEECCCCcE----EEEECCccccCCCcceeEEEe-CCCCEEEEEECC
Confidence 456789999997765221 111112223455566566653 11211 113357789997 788766666666
Q ss_pred CcEEEeecCCCeEEEEEc---C---CcEEEEEEcCCceEEEEecCCC-----------CccEEEEecC-CCeEEEEEeec
Q 011970 208 SIYKVFDLKNYTMLYSIS---D---KHVQEIKISPGIMLLIFNRSSS-----------HVPLKILSIE-DGTVLKVFYHL 269 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~---~---~~V~~vafSpg~~la~~s~~s~-----------D~tIkLWdi~-tG~~L~tl~~h 269 (474)
..|...|.+++....... + ....+++|.|++.|..+..... ...=+||-+. +|+......+
T Consensus 92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~- 170 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA- 170 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE-
T ss_pred CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCC-
Confidence 678888976554221111 1 2357899998666655532210 0112344332 5666554443
Q ss_pred CcceeEEEEEecCCC---eEEEE-eCCCcEEEEECCC-CceE-----Eecc-ccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 270 LHRNKKVDFIEQFNE---KLLVK-QENENLQILDVRN-AELM-----EVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~---~ll~~-~~D~tIkIWDv~t-g~~~-----~~l~-~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
...-..++|++..++ .|.++ +..+.|..+|+.. +... ..+. .+...+..+++..+|+++++.. .+.|.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence 234467888853222 46665 5788898888764 3322 1222 2344678899999999998876 88999
Q ss_pred EEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeC
Q 011970 338 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 338 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L-aS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
++|.+ |+++.++..+..+ ..+++|.||++.| ++.+. .++|.--++
T Consensus 251 ~~dp~~g~~~~~i~~p~~~-----~t~~afg~d~~~lyVt~~~-----------~g~i~~~~~ 297 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEHE-----------NNAVWKFEW 297 (314)
T ss_dssp EECTTCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEETT-----------TTEEEEEEC
T ss_pred EEeCCCCEEEEEEECCCCC-----EEEEEEeCCCCEEEEEECC-----------CCcEEEEEC
Confidence 99987 7777777765544 5789999999855 54432 677655554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.54 E-value=0.00013 Score=69.17 Aligned_cols=214 Identities=9% Similarity=0.037 Sum_probs=140.3
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--e
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--H 268 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~ 268 (474)
..|++.+|.+.-.--..+.|.-||+++++...--....+..+++.+++.|+++.. .-|.++|.++|+...-.. .
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSST
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEe----CccEEeecccceeeEEeeeec
Confidence 4455556666555556778888998888753222256788999986555555432 358999999997643322 1
Q ss_pred c--CcceeEEEEEecCCCeEEEEe-----CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE-EEEEc-CCcEEEE
Q 011970 269 L--LHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVW 339 (474)
Q Consensus 269 h--~~~v~~V~F~~~~~~~ll~~~-----~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l-laS~s-D~tIklW 339 (474)
. ..+...+.+- ++ +.+.++. ..+.-.+|.+..|+..++..+ ...+..++|+|+++. +.+-+ .+.|..+
T Consensus 99 ~~~~~~~nd~~vd-~~-G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 99 DLPGNRSNDGRMH-PS-GALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp TCTTEEEEEEEEC-TT-SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCcccceeeEEC-CC-CCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence 1 1244555543 44 4455543 234557888888887666543 446789999999985 45556 8888888
Q ss_pred eCCCc---------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 340 NFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 340 d~~G~---------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+++++ ....+.+-... ...+++.++|.+.++.-. .+.|..+| .+|+.+..+.--
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~-----pdG~~vD~~GnlWva~~~-----------~g~V~~~d-p~G~~~~~i~lP 238 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYD-TDGNHIARYEVP 238 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEEC-TTCCEEEEEECS
T ss_pred eecccccccccceEEEeccCccccc-----ccceEEcCCCCEEeeeeC-----------CCceEEec-CCCcEeeEecCC
Confidence 86421 11222222222 468999999998887543 67899999 589999988543
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEE
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYT 462 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS-pDg~~LaS 462 (474)
.. .+++++|- ||+++|+-
T Consensus 239 ~~----------------------------------~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 239 GK----------------------------------QTTCPAFIGPDASRLLV 257 (295)
T ss_dssp CS----------------------------------BEEEEEEESTTSCEEEE
T ss_pred CC----------------------------------ceEEEEEeCCCCCEEEE
Confidence 31 68999995 89988873
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.22 E-value=0.00096 Score=62.93 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=134.0
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE--c----CCcEEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S----DKHVQEIKI 234 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~----~~~V~~vaf 234 (474)
+.+.-|+..+|+. ..|... ..+.++++. +||.+|+.+ .++ +.++|.++|+...-. . ...+.++++
T Consensus 40 ~~I~r~d~~~g~~----~~~~~~--~~~~~i~~~-~dg~l~va~-~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v 110 (295)
T d2ghsa1 40 RELHELHLASGRK----TVHALP--FMGSALAKI-SDSKQLIAS-DDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRM 110 (295)
T ss_dssp TEEEEEETTTTEE----EEEECS--SCEEEEEEE-ETTEEEEEE-TTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEECC--CCcEEEEEe-cCCCEEEEE-eCc-cEEeecccceeeEEeeeecCCCcccceeeEE
Confidence 3455566666653 234332 346689997 689888754 454 889999999854322 1 235889999
Q ss_pred cCCceEEEEecC--CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--C----c-
Q 011970 235 SPGIMLLIFNRS--SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--A----E- 304 (474)
Q Consensus 235 Spg~~la~~s~~--s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t--g----~- 304 (474)
.|++.+..+... .....-.+|.+.+|+....+... ..-..++|+ +++..+... +..+.|..+++.. + +
T Consensus 111 d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s-~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 111 HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeec-CCCceEEEeecccceeeEeeecccccccccce
Confidence 986665554322 11234578888889877666543 345678887 566666665 5788888887642 1 1
Q ss_pred -eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEe
Q 011970 305 -LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYC 377 (474)
Q Consensus 305 -~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafS-pDg~~LaS~s 377 (474)
....+.+....+..+++..+|++.++.. .+.|..+|.+|+++..++--.. .+.+++|- ||.+.|.-.+
T Consensus 189 ~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~-----~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 189 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-----QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-----BEEEEEEESTTSCEEEEEE
T ss_pred EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCC-----ceEEEEEeCCCCCEEEEEE
Confidence 1122344556788999999999998876 7889999999999998864322 26889995 7877776444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.64 E-value=0.026 Score=52.88 Aligned_cols=266 Identities=9% Similarity=-0.020 Sum_probs=129.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCc-cc-eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC-C
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNF-SS-LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-S 208 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~-s~-Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D-~ 208 (474)
+...+...||+.++.++... +.| .. -....+.+||+.+++.... +.....+-.+-..+++. +||++++.|+.+ .
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~-~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRN-DAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMD-GNGQIVVTGGNDAK 98 (387)
T ss_dssp SEEEEETTTTEEEEEEECCC-TTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEEC-TTSCEEEECSSSTT
T ss_pred cEEEEEeeCCEEEEEEeecC-cccCCCCCceeEEEEEECCCCcEeec-CCCCCCcccceeEEEEe-cCCcEEEeecCCCc
Confidence 34444556677666554311 111 11 1223467899999887432 22222111122256786 799999998765 6
Q ss_pred cEEEeecCCCeEEE--EEc-CCcEEEEEEcCCceEEEEecCCC----CccEEEEecCCCeEEEEEee----------cCc
Q 011970 209 IYKVFDLKNYTMLY--SIS-DKHVQEIKISPGIMLLIFNRSSS----HVPLKILSIEDGTVLKVFYH----------LLH 271 (474)
Q Consensus 209 tiKlWdl~tg~~l~--tl~-~~~V~~vafSpg~~la~~s~~s~----D~tIkLWdi~tG~~L~tl~~----------h~~ 271 (474)
++.+||.++.+-.. .+. ...-...+..+++++++...... -..+.+||+.+.+-.. +.. +..
T Consensus 99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ 177 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQG 177 (387)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTG
T ss_pred ceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccc
Confidence 89999998876432 111 12233556665444444432111 1368999999876432 210 000
Q ss_pred ----ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--c-c---cC--CceEEEEE-cCCCcEEEEEc--CC--
Q 011970 272 ----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--R-T---EF--MTPSAFIF-LYENQLFLTFR--NR-- 334 (474)
Q Consensus 272 ----~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~-~---h~--~~v~sv~F-spdg~llaS~s--D~-- 334 (474)
......|.-+++..+..++.+..+.+.|..+....... . . +. ..-.++.+ ..++++++.+. ++
T Consensus 178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~ 257 (387)
T d1k3ia3 178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 257 (387)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCC
Confidence 01122333344444444566677777777776543321 0 0 11 01123333 35677777664 21
Q ss_pred -----cEEEEeC---C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 335 -----TVAVWNF---R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 335 -----tIklWd~---~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
...+.++ . ..-..+.... ...+.. --+.+..|||++++.|+............-.++.+||..+++-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~-~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W 333 (387)
T d1k3ia3 258 SDATTNAHIITLGEPGTSPNTVFASNG-LYFART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 333 (387)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTC-CSSCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CcccceeecccccccccCCCceeeccc-cccccc-cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence 2222332 1 1111111111 111101 1245667999999998752111100001123688999877653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.59 E-value=0.018 Score=59.25 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=114.0
Q ss_pred CCeEEEEec-----CCCcEEEeecCCCeEEEEEcC---------------------------------------CcEEE-
Q 011970 197 NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---------------------------------------KHVQE- 231 (474)
Q Consensus 197 nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~---------------------------------------~~V~~- 231 (474)
++++++..+ .++.|+-+|++||+.+..... ..||+
T Consensus 160 ~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~ 239 (571)
T d2ad6a1 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccc
Confidence 466766554 377899999999999886531 12332
Q ss_pred EEEcC-CceEEEEecCCC-------------CccEEEEecCCCeEEEEEeecCcceeEEE-------E-EecCCCe---E
Q 011970 232 IKISP-GIMLLIFNRSSS-------------HVPLKILSIEDGTVLKVFYHLLHRNKKVD-------F-IEQFNEK---L 286 (474)
Q Consensus 232 vafSp-g~~la~~s~~s~-------------D~tIkLWdi~tG~~L~tl~~h~~~v~~V~-------F-~~~~~~~---l 286 (474)
.++.| .+++........ ...+--.|++||+++-.++.+.|.++..+ + .+.+++. +
T Consensus 240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v 319 (571)
T d2ad6a1 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccce
Confidence 44444 333322211100 12466689999999988885433333211 1 1122321 2
Q ss_pred EEEeCCCcEEEEECCCCceEEe--c---------------------------------------cccCCceEEEEEcCCC
Q 011970 287 LVKQENENLQILDVRNAELMEV--S---------------------------------------RTEFMTPSAFIFLYEN 325 (474)
Q Consensus 287 l~~~~D~tIkIWDv~tg~~~~~--l---------------------------------------~~h~~~v~sv~Fspdg 325 (474)
+..+.++.+.+.|..||+.+.. . .++.. ...+|+|+.
T Consensus 320 ~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w--~~~a~dP~~ 397 (571)
T d2ad6a1 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQ--GVDSYDPES 397 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCS--CBCEEETTT
T ss_pred eeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEecccccccc--ccceECCCC
Confidence 3357899999999999998632 1 01111 124677777
Q ss_pred cEEEEEc-C-------------------------------------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 326 QLFLTFR-N-------------------------------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 326 ~llaS~s-D-------------------------------------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
.++.... + ++|.-+|.. |+.+-+..--... ..+. +
T Consensus 398 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~-----~~g~-l 471 (571)
T d2ad6a1 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-----WGGT-L 471 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-----CSBC-E
T ss_pred ceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCC-----Ccce-e
Confidence 6665432 2 467778884 8877554321111 1112 2
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
+-.|.+++.|+. |+.++-.|..|||.|..++-
T Consensus 472 ~TagglVf~G~~-----------dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 472 YTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EETTTEEEEECT-----------TSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECC-----------CCeEEEEECCCCcEEEEEEC
Confidence 224556776765 99999999999999987743
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.55 E-value=0.028 Score=57.60 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=88.8
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEE-------E-EecCCC--eEE-EEeCCCcEEEEECCCCceEEecc-ccCCce--
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVD-------F-IEQFNE--KLL-VKQENENLQILDVRNAELMEVSR-TEFMTP-- 316 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~-------F-~~~~~~--~ll-~~~~D~tIkIWDv~tg~~~~~l~-~h~~~v-- 316 (474)
.|--.|++||+..-.++...|-++..+ + +..+++ .++ ..+.++.+.++|-.+|+++-... +...+.
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 455669999999888874433333211 1 112232 233 35789999999999999874211 110000
Q ss_pred ---------------------------------EEEEEcCCCcEEEEEc-C-----------------------------
Q 011970 317 ---------------------------------SAFIFLYENQLFLTFR-N----------------------------- 333 (474)
Q Consensus 317 ---------------------------------~sv~Fspdg~llaS~s-D----------------------------- 333 (474)
...++.|+.+++.... +
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 1345677777766433 2
Q ss_pred -------CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 334 -------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 334 -------~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+.|.-||+. |+.+-...--... .+=.++-.|.+++.|+. ||.++-.|..|||.|.
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~------~gg~l~TagglVF~G~~-----------dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALW 493 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCCC------CCceeEECCCEEEEECC-----------CCcEEEEECCCCcEeE
Confidence 467889984 9887655422211 12223345677887765 9999999999999998
Q ss_pred EecCC
Q 011970 406 KINAT 410 (474)
Q Consensus 406 tl~gH 410 (474)
+++--
T Consensus 494 ~~~l~ 498 (560)
T d1kv9a2 494 QFEAQ 498 (560)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 87543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.42 E-value=0.013 Score=60.19 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=87.8
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEE--------EecCCC---eEEEEeCCCcEEEEECCCCceEEecc----------
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDF--------IEQFNE---KLLVKQENENLQILDVRNAELMEVSR---------- 310 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F--------~~~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~---------- 310 (474)
|--.|+++|+..-.++...+.++..+. .+.++. .++..+.++.+.++|..+|+.+-...
T Consensus 285 vvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~ 364 (573)
T d1kb0a2 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (573)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccc
Confidence 555789999998777643333332221 112221 23345789999999999999874211
Q ss_pred --------------------------ccCCceEEEEEcCCCcEEEEEc-C------------------------------
Q 011970 311 --------------------------TEFMTPSAFIFLYENQLFLTFR-N------------------------------ 333 (474)
Q Consensus 311 --------------------------~h~~~v~sv~Fspdg~llaS~s-D------------------------------ 333 (474)
+...+. ..+|.|+..++.... +
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~-~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 443 (573)
T d1kb0a2 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH-PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (573)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSS-CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred ccccceeeeeeccccccceEEeecccCCcccc-ccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence 111111 246777766655432 2
Q ss_pred -------------CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 334 -------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 334 -------------~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+++.-||+ +||.+-+.+....+ ++=.++-.|.+++.|+. ||.++.+|..
T Consensus 444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~-----------dg~l~A~Da~ 506 (573)
T d1kb0a2 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTA-----------DGRLVAYHAA 506 (573)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETT
T ss_pred cccccCCCCCCCcccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECC-----------CCeEEEEECC
Confidence 35777888 48887776654332 11123446788887765 9999999999
Q ss_pred CCeEEEEecC
Q 011970 400 TGKCLAKINA 409 (474)
Q Consensus 400 tG~cl~tl~g 409 (474)
||+.|.+++-
T Consensus 507 TGe~LW~~~~ 516 (573)
T d1kb0a2 507 TGEKLWEAPT 516 (573)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEeEEEEC
Confidence 9999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.38 E-value=0.053 Score=49.99 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=131.5
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
+..|+|+..++++.-+-..++.|+.-++.++.....+.. ..+..||+.. ++.|..+. ...+.|.+.++....+..
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d--~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD--SQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEec--cCCCEEEEEecCCceEEE
Confidence 446899866677777777889999999876554444442 4788999984 66666553 335689999986544332
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCC-CcEEEE--ECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVW 339 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D-~tIkIW--Dv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklW 339 (474)
.+.........+++. |.++.+.....+ +.-+|+ ++...............|.++++.+.++ +..+-. .++|..-
T Consensus 116 l~~~~l~~p~~l~vd-p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~ 194 (263)
T d1npea_ 116 LFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (263)
T ss_dssp EECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EecccccCCcEEEEe-cccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence 233334567888876 456777765432 344455 6655544444444556889999986655 546655 8899999
Q ss_pred eCCCcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 340 NFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 340 d~~G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|++|.-.++ +.+-. +| .+|++. +..|.-... ..++|.--|..+|+-+.++..+.
T Consensus 195 ~~~g~~~~~v~~~~~--~P----~~lav~--~~~lYwtd~----------~~~~I~~~~~~~g~~~~~~~~~~ 249 (263)
T d1npea_ 195 NPAQPGRRKVLEGLQ--YP----FAVTSY--GKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPHK 249 (263)
T ss_dssp ETTEEEEEEEEECCC--SE----EEEEEE--TTEEEEEET----------TTTEEEEEETTTTEEEEEECCSS
T ss_pred ECCCCCeEEEECCCC--Cc----EEEEEE--CCEEEEEEC----------CCCEEEEEECCCCccceEECCCC
Confidence 998765443 33322 22 467764 444443322 26889999999999988875444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.31 E-value=0.02 Score=53.73 Aligned_cols=149 Identities=7% Similarity=0.028 Sum_probs=86.2
Q ss_pred EEeCCCCeEEEEecCCC-----------cEEEeecCCCeEE--EEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 192 EFDDVNGKVLTYSAQDS-----------IYKVFDLKNYTML--YSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~-----------tiKlWdl~tg~~l--~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
+.-+.|||+++.|+.+. .+-+||+++++-. -... .......++.+++.+++.+. .+..++.+|
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg-~~~~~~~~y 103 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLY 103 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECS-SSTTCEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeec-CCCcceeEe
Confidence 33357999999988531 3678999988732 1221 22334667887666666643 223579999
Q ss_pred ecCCCeEEEEEeecCcce-eEEEEEecCCCeEEEEeCC------CcEEEEECCCCceEEeccc---------cCCc----
Q 011970 256 SIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRT---------EFMT---- 315 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v-~~V~F~~~~~~~ll~~~~D------~tIkIWDv~tg~~~~~l~~---------h~~~---- 315 (474)
|..+++-...-.-...+. -.++.. +++..++.++.+ ..+.+||..+.+-...... +...
T Consensus 104 d~~~~~w~~~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 182 (387)
T d1k3ia3 104 DSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 182 (387)
T ss_dssp EGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred cCccCcccccccccccccccceeee-cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence 999877643211111111 233333 455666666522 5789999999875543211 1000
Q ss_pred eEE-EEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 316 PSA-FIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 316 v~s-v~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
-.. +...++|+++..+. +..+.+.|..
T Consensus 183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred ceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 012 22357888888776 6666666664
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.26 E-value=0.098 Score=50.97 Aligned_cols=245 Identities=14% Similarity=0.166 Sum_probs=132.8
Q ss_pred eEEEEEEeeCCCEEE-EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-
Q 011970 131 VIRSLFYNKNNDSLI-TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (474)
Q Consensus 131 ~i~sv~fspdg~~Li-s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~- 208 (474)
.+..+.+||||+.|+ +.+..|++. .++++.|+.+|+.... .+.. . ...+++|+ +|++.|.+...|.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~------~~l~v~Dl~tg~~~~~--~i~~--~-~~~~~~W~-~D~~~~~Y~~~~~~ 193 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDW------VTIKFMKVDGAKELPD--VLER--V-KFSCMAWT-HDGKGMFYNAYPQQ 193 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSC------EEEEEEETTTTEEEEE--EEEE--E-CSCCEEEC-TTSSEEEEEECCCC
T ss_pred eecceEecCCCCEEEEEeccccCch------heeEEeccCcceeccc--cccc--c-cccceEEc-CCCCEEEEEEeccc
Confidence 455677899999886 455566666 8889999999996321 1111 1 12368998 7999998765442
Q ss_pred ---------------cEEEeecCCCe----EEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEE--ecCCCe---
Q 011970 209 ---------------IYKVFDLKNYT----MLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKIL--SIEDGT--- 261 (474)
Q Consensus 209 ---------------tiKlWdl~tg~----~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLW--di~tG~--- 261 (474)
.|.+|.+-+.. +++.-.+ ..+..+..|+ +..+++....+.+....+| |+.+..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence 47777776653 4444333 3577888886 4555444333334444555 433211
Q ss_pred -----EEEEEeecCcceeEEEEEecCCCeEEEE-e---CCCcEEEEECCCCce---EEeccccCCceEEEEEcC-CCcEE
Q 011970 262 -----VLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLY-ENQLF 328 (474)
Q Consensus 262 -----~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~---~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fsp-dg~ll 328 (474)
....+... -....+....++.+.+- . .++.|-.-++.+... ..+...+...+..-.++. ++.++
T Consensus 274 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv 350 (430)
T d1qfma1 274 TGILKWVKLIDNF---EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (430)
T ss_dssp CSSCCCEEEECSS---SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred ccccceeEeeccc---ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence 01112111 11122222335555542 2 345666667665432 233344444454444554 34555
Q ss_pred EEEc-CC--cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 329 LTFR-NR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 329 aS~s-D~--tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++-. |+ .|++++.. |+....+..-.. .|..+...++.. +.++++. --.=.++--+|+.||+.
T Consensus 351 l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-----sv~~~~~~~~~~~~~~~~ss--------~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 351 LCYLHDVKNTLQLHDLATGALLKIFPLEVG-----SVVGYSGQKKDTEIFYQFTS--------FLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCCSS-----EEEEEECCTTCSEEEEEEEC--------SSCCCEEEEEETTSSSC
T ss_pred EEEEcCCEeEEEEEECCCCcEEEecCCCCc-----eEeeccCCCCCCEEEEEEcC--------CCCCCeEEEEECCCCCc
Confidence 5655 65 68889996 554433222111 134444445544 4444432 12247888899999864
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.97 E-value=0.26 Score=50.26 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=45.1
Q ss_pred CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 334 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 334 ~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
++|.-+|+ +|+++-.++.+... ++=.++..|.+++.|+. ||.++-+|..|||.|..++--
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~------~~g~lstagglVF~Gt~-----------dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEcCCCCcEEeecCCCCCC------ccceeEEcCCeEEEeCC-----------CCeEEEEECCCCcEeEEEECC
Confidence 57888998 59998877765432 22224457778887765 999999999999999887643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.96 E-value=0.01 Score=59.81 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=85.7
Q ss_pred cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEE-ecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeE
Q 011970 209 IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIF-NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 286 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~-s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~l 286 (474)
++-+.|.++.+....+. +.....++++|++..+.+ +-++ ...+.+-++...+ .-+-+.|.-+..+..
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS-E~g~~l~e~ta~e----------~D~i~V~n~~rie~a 242 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS-EKGMTLPEMTAAE----------MDHIVVFNIAEIEKA 242 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT-TCCSSHHHHTCCS----------EEEEEEEEHHHHHHH
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccc-cCCcchhhccccc----------ceEEEEechHHhHHh
Confidence 46678888888666554 456677999974444444 3332 2222222222111 112233322111110
Q ss_pred EEEe---CCCcEEEEECCCC---ceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-------C------cE
Q 011970 287 LVKQ---ENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------G------EL 345 (474)
Q Consensus 287 l~~~---~D~tIkIWDv~tg---~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-------G------~l 345 (474)
+..+ +=+.+++-|.+.. ..+.... -...+..+.++|||+++..++ +.|+.|.|++ + ..
T Consensus 243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~ 321 (459)
T d1fwxa2 243 IAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 321 (459)
T ss_dssp HHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred hhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence 0000 1144677787752 2222211 122466789999999999887 9999999974 1 11
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+...+--.++ .-.+|..+|.--.| .. -|..|--||+..
T Consensus 322 ~~e~elglgP------Lht~fd~~g~ayts-lf----------ids~v~kw~~~~ 359 (459)
T d1fwxa2 322 VAEPELGLGP------LHTAFDGRGNAYTS-LF----------LDSQVVKWNIED 359 (459)
T ss_dssp EECCBCCSCE------EEEEECTTSEEEEE-ET----------TTTEEEEEEHHH
T ss_pred EeecccCcCc------cccccCCCceEEEE-ee----------ccceEEEEecch
Confidence 2222211221 35678888853333 22 288899999843
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.26 E-value=0.78 Score=46.86 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=41.4
Q ss_pred CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 334 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 334 ~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
++|.-||. +|+++-...--... ++=.++-.|.+++.|+. ||.++-.|..|||.|..++--
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~------~gg~lsTagglVF~G~~-----------Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAV------WGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC------CSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCceecccCCCCCC------ccceeEecCCEEEEECC-----------CCeEEEEECCCCcEeeEEECC
Confidence 57888998 49887544322111 22223446788887765 999999999999999887543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.44 Score=43.41 Aligned_cols=218 Identities=16% Similarity=0.139 Sum_probs=134.7
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
..+..|+|.+.++.|--+. ...+ .|..-++. |.... .+.. ..+..|..++++..++++-.+....+.
T Consensus 36 ~~~~~ld~D~~~~~iywsd--~~~~-------~I~~~~l~-g~~~~--~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~~ 102 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTD--ISEP-------SIGRASLH-GGEPT--TIIR-QDLGSPEGIALDHLGRTIFWTDSQLDR 102 (263)
T ss_dssp EEEEEEEEETTTTEEEEEE--TTTT-------EEEEEESS-SCCCE--EEEC-TTCCCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEEEeCCCEEEEEE--CCCC-------eEEEEEcc-cCCcE--EEEE-eccccccEEEEeccCCeEEEeccCCCE
Confidence 4577899998888776432 2222 33333332 32211 1222 235567889998777777777778889
Q ss_pred EEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEE--ecCCCeEEEEEe-ecCcceeEEEEEecCC
Q 011970 210 YKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKIL--SIEDGTVLKVFY-HLLHRNKKVDFIEQFN 283 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLW--di~tG~~L~tl~-~h~~~v~~V~F~~~~~ 283 (474)
|.+.++....+...+. -...+++++.| .+++.-+..+. ...+|+ ++ +|+-...+. .....-..+++. +.+
T Consensus 103 I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~-dG~~~~~i~~~~~~~P~glaiD-~~~ 178 (263)
T d1npea_ 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHM-DGTNRRILAQDNLGLPNGLTFD-AFS 178 (263)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--SSCEEEEEET-TSCCCEEEECTTCSCEEEEEEE-TTT
T ss_pred EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC--CCcEEEEecC-CCCCceeeeeecccccceEEEe-ecC
Confidence 9999987554322222 25789999997 66665554322 233455 44 454444443 222344567765 446
Q ss_pred CeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 284 EKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 284 ~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
++|-.. ...++|..-|+....+..+..+ ...|.++++. ++.++.|-. +++|..-|.. |+.++++..+...-
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~---- 252 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR---- 252 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCC----
Confidence 777665 5778999999877665555544 2357788774 788888887 8899999985 88877764333321
Q ss_pred eeEEEECCCC
Q 011970 361 TNNIYITSDQ 370 (474)
Q Consensus 361 v~svafSpDg 370 (474)
..+|++.+++
T Consensus 253 ~~gi~v~~~~ 262 (263)
T d1npea_ 253 LYGITIALSQ 262 (263)
T ss_dssp CCCEEEECSC
T ss_pred cceEEEeCCC
Confidence 2467666653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.18 E-value=0.14 Score=48.93 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=51.0
Q ss_pred cCCceEEEEEcCCCcEEEEE--c--C------------CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 312 EFMTPSAFIFLYENQLFLTF--R--N------------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~--s--D------------~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
....+..+++..+|.+++|- . + .+..+|..+++..+.+...... -|.|++|||+++|.-
T Consensus 148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~-----pNGI~~s~d~~~lyV 222 (340)
T d1v04a_ 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDF-----ANGINISPDGKYVYI 222 (340)
T ss_dssp TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESS-----EEEEEECTTSSEEEE
T ss_pred cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCc-----cceeEECCCCCEEEE
Confidence 34578899999999999982 1 1 3567787764444443333332 489999999988765
Q ss_pred EecCCCccccccCCCCeEEEEeCCC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+.. ..+.|+.+++..
T Consensus 223 a~t----------~~~~i~~y~~~~ 237 (340)
T d1v04a_ 223 AEL----------LAHKIHVYEKHA 237 (340)
T ss_dssp EEG----------GGTEEEEEEECT
T ss_pred EeC----------CCCeEEEEEeCC
Confidence 543 378899998854
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.51 Score=42.91 Aligned_cols=230 Identities=11% Similarity=0.105 Sum_probs=139.7
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.|+-.++.+++...-+++ . ..+.+|.|.+.++.|--+ +...+ .+.--++............-...+..|
T Consensus 11 ~I~~~~l~~~~~~~~~~~-~-~~~~~id~d~~~~~lYw~--D~~~~-------~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPN-L-RNVVALDTEVASNRIYWS--DLSQR-------MICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp SEEEEETTSCCCEEEECS-C-SSEEEEEEETTTTEEEEE--ETTTT-------EEEEEEC--------CEEEECSSCSCC
T ss_pred eEEEEECCCCcceeeeCC-C-CceEEEEEEeCCCEEEEE--ECCCC-------EEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 477778876554444443 3 346799999998877642 22222 222222211111000111111235667
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
..+|++..++++-.+.+..++|.+.++....+...+. .....++++.| .+.|.-+.. +....|.--++ +|.-..+
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~-~~~~~I~r~~~-dGs~~~~ 157 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGL-NGVDIYS 157 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEET-TSCCEEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc-CCCcceeEecc-CCCceec
Confidence 7899987788887777888999999987655444343 35789999997 555555433 22334555565 5555555
Q ss_pred Ee-ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 266 FY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 266 l~-~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
+. ........+++. +.+++|... +..++|..-|+....+..+. ..+...+.++++. ++.++.+-. ++.|...|
T Consensus 158 l~~~~~~~p~gl~iD-~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 158 LVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (266)
T ss_dssp EECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ccccccceeeEEEee-ccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence 54 233445667764 456777776 57889999998766554432 3344567788766 678888876 88888888
Q ss_pred C-CCcEEEEeccCC
Q 011970 341 F-RGELVTSFEDHL 353 (474)
Q Consensus 341 ~-~G~ll~tl~gH~ 353 (474)
. +|+-++.+....
T Consensus 236 ~~~g~~~~~~~~~~ 249 (266)
T d1ijqa1 236 RLTGSDVNLLAENL 249 (266)
T ss_dssp TTTCCCCEEEECSC
T ss_pred CCCCcceEEEEcCC
Confidence 7 477666665443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.76 Score=41.70 Aligned_cols=184 Identities=9% Similarity=0.021 Sum_probs=113.8
Q ss_pred cEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe---EEE-EEeecCcceeEEEEEecC
Q 011970 209 IYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT---VLK-VFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~---~L~-tl~~h~~~v~~V~F~~~~ 282 (474)
.|+--++.+.+....+. ...+.+|+|.+ .+++.-+. ...+.|.--++.... ... .+.........+++- +.
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D--~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD-~~ 87 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD-WI 87 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEEEECSSCSCCCEEEEE-TT
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEE--CCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe-ec
Confidence 46667776655333334 35678899986 56555443 334566665553211 112 222333455667764 34
Q ss_pred CCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc--CCcEEEEeCCCcEEEEeccCCCCcCC
Q 011970 283 NEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPD 358 (474)
Q Consensus 283 ~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s--D~tIklWd~~G~ll~tl~gH~~~~~~ 358 (474)
++.|-.. ...++|.+.++....+..........+.++++.| .|.++.+-. ...|.--+++|.-.+.+-......
T Consensus 88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~-- 165 (266)
T d1ijqa1 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW-- 165 (266)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC--
T ss_pred cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce--
Confidence 6666665 5778999999988777666666667899999876 677777764 456777777877666654433221
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+++++.+.++.|.-... ..++|..-|+....+...+.+
T Consensus 166 --p~gl~iD~~~~~lYw~d~----------~~~~I~~~~~dG~~~~~~~~~ 204 (266)
T d1ijqa1 166 --PNGITLDLLSGRLYWVDS----------KLHSISSIDVNGGNRKTILED 204 (266)
T ss_dssp --EEEEEEETTTTEEEEEET----------TTTEEEEEETTSCSCEEEEEC
T ss_pred --eeEEEeeccccEEEEecC----------CcCEEEEEECCCCCEEEEEeC
Confidence 478999998887765432 367898888754444333333
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.58 E-value=0.92 Score=45.96 Aligned_cols=154 Identities=9% Similarity=0.023 Sum_probs=82.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CC-cEEEEEEcC---CceEEEEecCC---CCccEEEEecCCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK-HVQEIKISP---GIMLLIFNRSS---SHVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~-~V~~vafSp---g~~la~~s~~s---~D~tIkLWdi~tG 260 (474)
.+++. +|++++ ++.|+.+--=|.+||+.+.... +. .-..+.-+| ++++.+..... .++.|.=+|++||
T Consensus 110 g~a~~--~~~i~~-~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG 186 (571)
T d2ad6a1 110 GLAYG--AGQIVK-KQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CCEEE--TTEEEE-ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred cceee--CCeEEE-EeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCC
Confidence 35554 455544 4456655555778888765542 10 000111112 44444443221 2456999999999
Q ss_pred eEEEEEeec-------------------------------------CcceeE-EEEEecCCCeEEEEeC-----------
Q 011970 261 TVLKVFYHL-------------------------------------LHRNKK-VDFIEQFNEKLLVKQE----------- 291 (474)
Q Consensus 261 ~~L~tl~~h-------------------------------------~~~v~~-V~F~~~~~~~ll~~~~----------- 291 (474)
+.+-++... ...+|. .++- +..+.+..+..
T Consensus 187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D-~~~g~~y~~tg~~~p~~~~~r~ 265 (571)
T d2ad6a1 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRP 265 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSC
T ss_pred cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccc-hhcCeeeeecccccCccccccc
Confidence 999877522 111221 1221 33444443311
Q ss_pred -----CCcEEEEECCCCceEEeccc--cC-------CceEEEEEcCCCc---EEEEEc-CCcEEEEeC-CCcEEE
Q 011970 292 -----NENLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVT 347 (474)
Q Consensus 292 -----D~tIkIWDv~tg~~~~~l~~--h~-------~~v~sv~Fspdg~---llaS~s-D~tIklWd~-~G~ll~ 347 (474)
...+--.|++||+++-.... |. ..+..+....+|+ .++.+. ++.+-+.|. +|+++.
T Consensus 266 g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~ 340 (571)
T d2ad6a1 266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence 24577789999998754432 22 1222223344555 345566 999999998 498874
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.77 E-value=0.42 Score=47.19 Aligned_cols=53 Identities=6% Similarity=0.152 Sum_probs=40.7
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE--EEEEc--------CCcEEEEEEcCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--------DKHVQEIKISPG 237 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~--l~tl~--------~~~V~~vafSpg 237 (474)
.+..|+.++|. |||++|++--..|.|++.+.++++. +..+. +.....|+|+|+
T Consensus 25 ~L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 37889999998 7999999875679999999888764 33432 135788999984
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.67 E-value=0.42 Score=48.36 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.+.+.-||+.||+.+.... .....+=.++ .|+++.++ +.|+.++-+|.+||+.|-+++
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G---~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG---TAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEE---CCCCcEEEEECCCCcEeEEEE
Confidence 3567778999999887665 2222221222 45555443 458999999999999999988
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.51 E-value=0.37 Score=47.58 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE--EEEeccCCC-CcCCCCeeEEEECCC----CCEEEEE
Q 011970 306 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLL-WHPDCNTNNIYITSD----QDLIISY 376 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l--l~tl~gH~~-~~~~~~v~svafSpD----g~~LaS~ 376 (474)
++++...-..+++++|.|||++|++-. +|+|++.+.. |+. +..+..-.. ..-..-...|+|.|| +.+-+++
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy 98 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence 444444567899999999999999997 8999999975 543 233321100 000012468999996 6777776
Q ss_pred ec
Q 011970 377 CK 378 (474)
Q Consensus 377 s~ 378 (474)
+.
T Consensus 99 t~ 100 (450)
T d1crua_ 99 TF 100 (450)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.91 E-value=2.3 Score=42.76 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=92.5
Q ss_pred ecccCCCCCcccccccccccccEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEeecCCCceE-------------
Q 011970 69 YDTHDPKGHCPFVLPFLMKRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI------------- 132 (474)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i------------- 132 (474)
.-.|+.....+...+. +..+... .+.++.++.+|.+..+|+.||+.+-..+..+.+.+
T Consensus 301 ~~~~d~wd~d~~~~~~------l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (573)
T d1kb0a2 301 ETPGDNWDYTSTQPMI------LADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIA 374 (573)
T ss_dssp SSTTCCSCCCCCSCCE------EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECG
T ss_pred ccCcccccccccceee------ecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeee
Confidence 3456666666553222 2333333 46889999999999999999999876553221111
Q ss_pred ---------------------EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEE
Q 011970 133 ---------------------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (474)
Q Consensus 133 ---------------------~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V 191 (474)
...+|+|+...+..-+.... ..++....++.....+........+. .+
T Consensus 375 ~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 443 (573)
T d1kb0a2 375 AARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVP----------VNLMDDKKWEFNQAGPGKPQSGTGWN-TA 443 (573)
T ss_dssp GGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECC----------CEEEECTTCCTTCCCTTSTTGGGTCC-CC
T ss_pred eccccccceEEeecccCCccccccccCCCcceEEeeccccc----------eeeecccccccccCCCCccccccccc-cc
Confidence 13467777776655332211 11223233332111000000001110 01
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.| +++.- .....-+++.=||+.||+.+.+... ....+=..+ .|+++.++ ..|+.++-+|.+||+.|-++.
T Consensus 444 ~~--~~~~p-~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G---~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 444 KF--FNAEP-PKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG---TADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp EE--ECSSC-CCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEE
T ss_pred cc--cccCC-CCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEE---CCCCeEEEEECCCCcEeEEEE
Confidence 11 01110 0011235678889999998876652 111111112 45555544 458999999999999999987
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.89 E-value=0.66 Score=47.02 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=48.1
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~ 283 (474)
.+.+.=+|++||+.+.... ...+++=..+ .|+++.++ +.|+.++-+|.+||++|-+++-.. ..-.-+.|. .+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~G---t~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~-~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG---TGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE-QDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETT
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEe---CCCCeEEEEECCCCcEeEEEECCCCccccCEEEE-ECC
Confidence 3678889999999887765 2233321223 45555443 558999999999999999988321 222346664 455
Q ss_pred Ce
Q 011970 284 EK 285 (474)
Q Consensus 284 ~~ 285 (474)
++
T Consensus 541 ~q 542 (582)
T d1flga_ 541 EQ 542 (582)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.02 E-value=5.3 Score=37.95 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=120.6
Q ss_pred ccEEE-EeeCCC----eEEeeeccccceeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCc------cceeeeEEEE
Q 011970 98 RDIVF-ALAHSG----VCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNF------SSLKCRSTKI 165 (474)
Q Consensus 98 ~~~la-s~s~dg----tiklW~~~tg~~l~~-l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~------s~Lk~~~~~i 165 (474)
++.+| +.+..| +++++|++||+.+-. +.. ....+++|.+||+.|.-...+..+.. .+.+-+.+..
T Consensus 136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (430)
T d1qfma1 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (430)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred CCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEE
Confidence 55555 555555 799999999997752 221 11257899999999876543321110 1233344545
Q ss_pred eEeccCCCCCccceeeec-cccCceEEEEeCCCCeEEEEe---cCCCcEEEee--cCCCe--------EEEEEcC-CcEE
Q 011970 166 EYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFD--LKNYT--------MLYSISD-KHVQ 230 (474)
Q Consensus 166 w~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~~nGk~LaS~---s~D~tiKlWd--l~tg~--------~l~tl~~-~~V~ 230 (474)
+.+-+++. ....+|+.. ...+...+..+ .||++|... ..+.+..+|- +.... ....+.. ....
T Consensus 213 h~lgt~~~-~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (430)
T d1qfma1 213 HVLGTDQS-EDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY 290 (430)
T ss_dssp EETTSCGG-GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred EECCCCcc-ccccccccccCCceEEeeecc-CCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccce
Confidence 54433332 123456542 23344457777 799987532 2355566664 33211 1111221 1122
Q ss_pred EEEEcCCc-eEEEEecCCCCccEEEEecCCCeE--EEEEe-ecCcceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCC
Q 011970 231 EIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV--LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNA 303 (474)
Q Consensus 231 ~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~--L~tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D--~tIkIWDv~tg 303 (474)
...-..|+ .++.+..+.....|-.-++.++.. .+++- .+...+..-.+ ..+++.|+... +| ..|++++..++
T Consensus 291 ~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~-~~~~~~lvl~~~~~~~~~l~v~~~~~~ 369 (430)
T d1qfma1 291 DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CVRSNFLVLCYLHDVKNTLQLHDLATG 369 (430)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE-EETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE-EEECCEEEEEEEcCCEeEEEEEECCCC
Confidence 22223333 333332222222333334443221 12222 22222332222 24466777664 55 45788999999
Q ss_pred ceEEeccccCCceEEEEEcCCCc-EEEEEc----CCcEEEEeCC-CcE
Q 011970 304 ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR----NRTVAVWNFR-GEL 345 (474)
Q Consensus 304 ~~~~~l~~h~~~v~sv~Fspdg~-llaS~s----D~tIklWd~~-G~l 345 (474)
+...+.......+..+...++.. ++.+.+ =.++--+|+. |++
T Consensus 370 ~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 370 ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 88776554555666555555443 444432 3577777774 653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.07 E-value=5.7 Score=37.14 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCcEEEEeCC--Cc-E--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc----cccCCCCeEEEEeCCCCeE
Q 011970 333 NRTVAVWNFR--GE-L--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ----WMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 333 D~tIklWd~~--G~-l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~----~~~s~DgtIklWdi~tG~c 403 (474)
..+|.++++. +. + +.++++.... ..|+|++.+||.+.+|-........ ..-..-.+.++|...++++
T Consensus 123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~----~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~ 198 (340)
T d1v04a_ 123 SSTVEVFKFQEEEKSLLHLKTIRHKLLP----SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV 198 (340)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCS----SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred CceeEEEEEeCCCCeEEEEeecCCcccc----CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence 4577777772 32 2 3455554433 2589999999999998321111000 0000123455666555555
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EEcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La-Sgs~DgtVklWd 473 (474)
-....+-. .-..|++|||+++|+ +-+..+.|+.++
T Consensus 199 ~~~~~~l~-----------------------------------~pNGI~~s~d~~~lyVa~t~~~~i~~y~ 234 (340)
T d1v04a_ 199 RVVAEGFD-----------------------------------FANGINISPDGKYVYIAELLAHKIHVYE 234 (340)
T ss_dssp EEEEEEES-----------------------------------SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred EEEcCCCC-----------------------------------ccceeEECCCCCEEEEEeCCCCeEEEEE
Confidence 43333322 456799999998765 555677777654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.97 E-value=8.3 Score=36.60 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=104.1
Q ss_pred CCcEEEeecCCCeEEEEEcCCcEEEEEEc------CCc-eEEEEe-cCCCCccEEEEecC-CCeEEEEEeec-------C
Q 011970 207 DSIYKVFDLKNYTMLYSISDKHVQEIKIS------PGI-MLLIFN-RSSSHVPLKILSIE-DGTVLKVFYHL-------L 270 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~~~V~~vafS------pg~-~la~~s-~~s~D~tIkLWdi~-tG~~L~tl~~h-------~ 270 (474)
++=+.++|| +|+.+..+..+.+..|..- ... -+|.++ +...-.+|.+|.+. .+..+..+... .
T Consensus 49 ~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~ 127 (353)
T d1h6la_ 49 KSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAI 127 (353)
T ss_dssp TSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSS
T ss_pred cCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccccccc
Confidence 334889998 5888888876555554433 222 233332 22122478888874 33445555421 1
Q ss_pred cceeEEEEE--ecCCCe-EEEEeCCCcEEEEECC---CCc----eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 271 HRNKKVDFI--EQFNEK-LLVKQENENLQILDVR---NAE----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 271 ~~v~~V~F~--~~~~~~-ll~~~~D~tIkIWDv~---tg~----~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
..+..+++. +.++.. .++...++.++.|.+. ++. +++.+.- ...+..+++.++.+.|.-+- +.-|...
T Consensus 128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKF 206 (353)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEE
Confidence 235677773 333333 3446788999888663 333 3344432 24688899998877776666 5544333
Q ss_pred eCC------CcEEEEecc-CCCCcCCCCeeEEEE--CCCCC-EEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEec
Q 011970 340 NFR------GELVTSFED-HLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 408 (474)
Q Consensus 340 d~~------G~ll~tl~g-H~~~~~~~~v~svaf--SpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~ 408 (474)
+.+ +.++-...+ |... | +..|++ .++|+ ||+..|. .|++..|+|.++ .+.+..|+
T Consensus 207 ~a~~~~~~~~~~i~~~~g~~l~~--D--~EGlaiy~~~~~~GylivSsQ----------G~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 207 SAEPDGGSNGTVIDRADGRHLTP--D--IEGLTIYYAADGKGYLLASSQ----------GNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp ESSTTSCSCCEEEEECSSSSCCS--C--EEEEEEEECGGGCEEEEEEEG----------GGTEEEEEESSTTCCEEEEEE
T ss_pred EeccCCCccceeeecccCccccC--C--ccccEEEEcCCCCeEEEEEcC----------CCCeEEEEecCCCccccceEE
Confidence 332 233433333 3222 1 455554 55544 5555454 289999999876 47777664
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.62 E-value=8.9 Score=36.40 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=104.8
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEE------EeeCCCEEEEEEeecCCCccceeeeEEEEeEec--c
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLF------YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--R 170 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~------fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~ 170 (474)
-+|+.....+=+.++|++ |+.|.+++.+. ++.|. ++-++..|+.+|.-.... -++.+|.+. .
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr---~NNVDvr~~~~l~~~~~di~vasnR~~~~------~~l~~~~id~~~ 110 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYHTGK---LNNVDIRYDFPLNGKKVDIAAASNRSEGK------NTIEIYAIDGKN 110 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECCSSC---EEEEEEEEEEEETTEEEEEEEEEECCTTT------CEEEEEEEETTT
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEecccCC---cCccccccccccCCcceEEEEEeCCcCcc------eeEEEEEecCcc
Confidence 355555666669999986 99999987533 33333 233333466655321111 145666653 2
Q ss_pred CCCC----CccceeeeccccCceEEEE--eCCCCeE-EEEecCCCcEEEeec---CCC----eEEEEEc-CCcEEEEEEc
Q 011970 171 GKPD----SGFALFESESLKWPGFVEF--DDVNGKV-LTYSAQDSIYKVFDL---KNY----TMLYSIS-DKHVQEIKIS 235 (474)
Q Consensus 171 G~~~----~~~~lf~~~~~~~~~~V~F--s~~nGk~-LaS~s~D~tiKlWdl---~tg----~~l~tl~-~~~V~~vafS 235 (474)
+.+. ...+.+. ...-+..+++ ++.+|++ +.....++.+..|.+ .++ ++++++. ...+..+++.
T Consensus 111 ~~l~~~~~~~~p~~~--~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvD 188 (353)
T d1h6la_ 111 GTLQSITDPNRPIAS--AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAAD 188 (353)
T ss_dssp TEEEECSCSSSCEEC--SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEE
T ss_pred ccccccccccccccc--ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEe
Confidence 2110 0001111 1223445666 6556764 444556888887766 344 3555665 4679999999
Q ss_pred C-CceEEEEecCCCCccEEEE--ecC-----CCeEEEEEee--cCcceeEEEEEe-cC-CCeEEEE-eCCCcEEEEECCC
Q 011970 236 P-GIMLLIFNRSSSHVPLKIL--SIE-----DGTVLKVFYH--LLHRNKKVDFIE-QF-NEKLLVK-QENENLQILDVRN 302 (474)
Q Consensus 236 p-g~~la~~s~~s~D~tIkLW--di~-----tG~~L~tl~~--h~~~v~~V~F~~-~~-~~~ll~~-~~D~tIkIWDv~t 302 (474)
+ .+.|.++.. + +.+| +.+ .++.+....+ ...-+..|+... .+ .++|+++ |.|.+..|||.++
T Consensus 189 de~~~LyisEE---~--~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 189 DEYGSLYIAEE---D--EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp TTTTEEEEEET---T--TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCCCcEEEecC---c--cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 7 677777633 2 3456 322 2344433322 345567777542 22 3477775 6899999999765
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.71 E-value=13 Score=37.20 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=114.6
Q ss_pred CCeEEEEecCCCcEEEeec-CCCeEEEEEcC------------Cc-EEEEEEcCCc-----eEEEEecCCCCccEEEEec
Q 011970 197 NGKVLTYSAQDSIYKVFDL-KNYTMLYSISD------------KH-VQEIKISPGI-----MLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl-~tg~~l~tl~~------------~~-V~~vafSpg~-----~la~~s~~s~D~tIkLWdi 257 (474)
||.+.++.+.++.+-.-|. +||+.+..+.. .. -+.|++.++. ++... ..|+.|-=.|.
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~---t~dg~l~Alda 138 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT---QLDGNVAALNA 138 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE---CTTSEEEEEET
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEE---eCCCCeEeecc
Confidence 5766666565444444454 57888776531 11 1456776432 33333 34677777899
Q ss_pred CCCeEEEEEeec---C-cce-eEEEEEecCCCeEEEEe------CCCcEEEEECCCCceEEecccc--------------
Q 011970 258 EDGTVLKVFYHL---L-HRN-KKVDFIEQFNEKLLVKQ------ENENLQILDVRNAELMEVSRTE-------------- 312 (474)
Q Consensus 258 ~tG~~L~tl~~h---~-~~v-~~V~F~~~~~~~ll~~~------~D~tIkIWDv~tg~~~~~l~~h-------------- 312 (474)
+||+++..+... . ..+ ....+ .+++++++. ..+.|+-+|++||+++-.+...
T Consensus 139 ~tG~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~ 215 (596)
T d1w6sa_ 139 ETGETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (596)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred ccCceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccc
Confidence 999999888621 1 111 11121 157888863 2488999999999988542110
Q ss_pred -----------------------CCceE-EEEEcCCCcEEEEEc-CC----------------cEEEEeCC-CcEEEEec
Q 011970 313 -----------------------FMTPS-AFIFLYENQLFLTFR-NR----------------TVAVWNFR-GELVTSFE 350 (474)
Q Consensus 313 -----------------------~~~v~-sv~Fspdg~llaS~s-D~----------------tIklWd~~-G~ll~tl~ 350 (474)
...++ ..++.++..++--+. +. .|---|.+ |+++-.+.
T Consensus 216 ~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q 295 (596)
T d1w6sa_ 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (596)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccc
Confidence 11122 234555555554432 22 24456774 99876554
Q ss_pred --cCCCCcCCCCeeEEE---ECCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 351 --DHLLWHPDCNTNNIY---ITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 351 --gH~~~~~~~~v~sva---fSpDg~---~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
.|..|..+|...-+. ...||+ .++...+ +|.+-++|-.||+.+...
T Consensus 296 ~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k-----------~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR-----------NGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT-----------TSEEEEEETTTCCEEEEE
T ss_pred ceeccccCCccccceeeeeccccccccccceecccc-----------ccceeeecCCCCceeeec
Confidence 677787666422222 234554 5666665 899999999999998654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.56 E-value=22 Score=33.37 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=126.0
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCC-eEEEEEeecCc-
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLH- 271 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~- 271 (474)
.|+.++||-=+ ..++.++|+++-+.+++.. .+.|-=-+|-...+|+.-. +..|.-|+++.. ++.+.|.-|..
T Consensus 71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT----~taVYHW~~~g~s~P~k~fdR~~~L 145 (327)
T d1utca2 71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT----DNAVYHWSMEGESQPVKMFDRHSSL 145 (327)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC----SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc----CCceEEEcccCCCCchhhhhhcccc
Confidence 47889988766 5689999999999988775 4555445555566777663 346999999532 56777774421
Q ss_pred -ceeEEEEEecCCCe-EEE-E--eC----CCcEEEEECCCCceEEeccccCCceEEEEEc--CC-CcEEEEEc----CCc
Q 011970 272 -RNKKVDFIEQFNEK-LLV-K--QE----NENLQILDVRNAELMEVSRTEFMTPSAFIFL--YE-NQLFLTFR----NRT 335 (474)
Q Consensus 272 -~v~~V~F~~~~~~~-ll~-~--~~----D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs--pd-g~llaS~s----D~t 335 (474)
...=+.+....+++ ++. | +. .|.+|||.++.+ .-+.+.||...--.+.+. ++ .++|+-+. .+.
T Consensus 146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k 224 (327)
T d1utca2 146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 224 (327)
T ss_dssp TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEE
T ss_pred cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcE
Confidence 22233343222333 332 2 23 378899997754 345667776433333222 22 23343332 235
Q ss_pred EEEEeCC----CcE-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 336 VAVWNFR----GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 336 IklWd~~----G~l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+.|-++. |.. ...+.-......|-.| ++.+|+--.+|.--++ -|.|-|.|++||.|+..
T Consensus 225 LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv-amqvs~kygiiyviTK-----------~G~i~lyDleTgt~i~~ 292 (327)
T d1utca2 225 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYM 292 (327)
T ss_dssp EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE-EEEEETTTTEEEEEET-----------TSEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCccCCCCCcceeEEEECCccccCCcEE-EEEeeccCCEEEEEec-----------CcEEEEEEcccccEEEE
Confidence 5556651 111 0111111111111122 4555555555555555 79999999999999976
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
=+=..+ .|.--+-+.+..=|+.-+++|.|
T Consensus 293 nRIs~~----------------------------------~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 293 NRISGE----------------------------------TIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp EECCSS----------------------------------CEEEEEEETTTTEEEEEETTSEE
T ss_pred eecCCC----------------------------------ceEEeccCCCCceEEEECCCCeE
Confidence 443332 56655555565556666677765
|