Citrus Sinensis ID: 011974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MGCISGWHLSNSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS
cccccccEEcHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHccccccccccccccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccEEEEEEccEEEEcccHHHHcccccccEEEEEEccccccccccHHHHHHHcccccHHHHcccccccccccccHHHccHHHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHcccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHccccHHHHHcccccc
cccEcccEEcHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHcccccccccccccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHccccEEEEccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccHHHHcEcccccEEcEEEccccccccEcccHHHHHcccccHHHHccccccHHHHHcccEEEcHHHHHHHcHHHHHHHHHHHHcccccEEEEccccccHEEEEcccccccccccEEEcccccccccHHHHHHcEEEEEccccccHHHHccHccHHHHHHHcccccHHHHHcccccc
mgcisgwhlsnsclgkrlgprilgrrpqstvPEVIYQILeepmskdelkgrsdipqTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRhvasssipkQLHCLALRLANEHSTNAAARlqlpsaelvpalvdnsYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITdrktyypmqawfslhplspAIIEVKALqhfdwfskgkvpvlEAMEKDQRVRAQfrggssaivannteKPYVIAAKLQALSPKYNSLMNHIRihlpemfpslnkvvfldddlvvqtdlsplwdidmngkvngavatcrgddkfvMSKTLKSYlnfshplisrnfdpnecawaygmnifdLEAWRKTNISQTYHYWLEQNLKSdlslwqlgtlppgliafhghvhvidpfwhmlglgyqentsfadaesagvihfngrakpwldiafpklrplwskyINFSDKFIKSCHIRAS
mgcisgwhlsnsclgkrlgprilgrrpqstVPEVIYQIleepmskdelkgrsDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSlvknslhpakIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFrggssaivannteKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLsplwdidmngkVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS
MGCISGWHLSNSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS
**CISGWHLSNSCLGKRLGPRILGRR*QSTVPEVIYQIL**********************************TFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAME****VRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHI***
*GCISGWHLSNSCLGKRLGPR**************************************EFMADMKESKSDAKTFAIKLRDMVTL*********IQEYLYRHVASSSIPKQLHCLALRLANEHS******************VDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHI***
MGCISGWHLSNSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS
*GCISGWHLSNSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGG****************AKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIR**
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MGCISGWHLSNSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q9FH36535 Probable galacturonosyltr yes no 0.981 0.869 0.824 0.0
Q0WV13533 Probable galacturonosyltr no no 0.972 0.864 0.568 1e-157
Q8GWT1532 Probable galacturonosyltr no no 0.970 0.864 0.568 1e-157
Q8L4B0540 Probable galacturonosyltr no no 0.951 0.835 0.424 1e-106
Q93ZX7616 Probable galacturonosyltr no no 0.886 0.681 0.415 4e-99
Q9LE59673 Polygalacturonate 4-alpha no no 0.854 0.601 0.400 3e-96
Q949Q1537 Probable galacturonosyltr no no 0.862 0.761 0.393 3e-93
Q9LSG3559 Galacturonosyltransferase no no 0.833 0.706 0.419 3e-93
Q0WQD2680 Probable galacturonosyltr no no 0.818 0.570 0.408 7e-90
Q9FWA4561 Probable galacturonosyltr no no 0.873 0.737 0.414 5e-86
>sp|Q9FH36|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/466 (82%), Positives = 429/466 (92%), Gaps = 1/466 (0%)

Query: 10  SNSCLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKES 68
           S +CLGKRL P++LGRR  S  VPE +YQ+LE+P+S+ ELKGRSDIPQTL++FM+++K S
Sbjct: 70  SLACLGKRLKPKLLGRRVDSGNVPEAMYQVLEQPLSEQELKGRSDIPQTLQDFMSEVKRS 129

Query: 69  KSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAA 128
           KSDA+ FA KL++MVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLAL+LANEHS NAA
Sbjct: 130 KSDAREFAQKLKEMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALKLANEHSINAA 189

Query: 129 ARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTY 188
           ARLQLP AELVP LVDN+YFH+VLASDN+LA SVVA SLV+N+L P KIVLHIITDRKTY
Sbjct: 190 ARLQLPEAELVPMLVDNNYFHFVLASDNILAASVVAKSLVQNALRPHKIVLHIITDRKTY 249

Query: 189 YPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANN 248
           +PMQAWFSLHPLSPAIIEVKAL HFDW SKGKVPVLEAMEKDQRVR+QFRGGSS IVANN
Sbjct: 250 FPMQAWFSLHPLSPAIIEVKALHHFDWLSKGKVPVLEAMEKDQRVRSQFRGGSSVIVANN 309

Query: 249 TEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDM 308
            E P V+AAKLQALSPKYNSLMNHIRIHLPE+FPSLNKVVFLDDD+V+QTDLSPLWDIDM
Sbjct: 310 KENPVVVAAKLQALSPKYNSLMNHIRIHLPELFPSLNKVVFLDDDIVIQTDLSPLWDIDM 369

Query: 309 NGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKT 368
           NGKVNGAV TCRG+DKFVMSK  KSYLNFS+P I++NF+P ECAWAYGMN+FDL AWR+T
Sbjct: 370 NGKVNGAVETCRGEDKFVMSKKFKSYLNFSNPTIAKNFNPEECAWAYGMNVFDLAAWRRT 429

Query: 369 NISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADA 428
           NIS TY++WL++NLKSDLSLWQLGTLPPGLIAFHGHV  IDPFWHMLGLGYQE TS+ADA
Sbjct: 430 NISSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWHMLGLGYQETTSYADA 489

Query: 429 ESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 474
           ESA V+HFNGRAKPWLDIAFP LRPLW+KY++ SD+FIKSCHIRAS
Sbjct: 490 ESAAVVHFNGRAKPWLDIAFPHLRPLWAKYLDSSDRFIKSCHIRAS 535
Involved in pectin assembly and/or distribution, and in the synthesis of secondary wall glucuronoxylan. Probably involved in the synthesis of the glycosyl sequence at the glucuronoxylan reducing end. May be involved in synthesis of a complex glycan primer for xylan synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q0WV13|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWT1|GAUTE_ARATH Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1 Back     alignment and function description
>sp|Q8L4B0|GAUTF_ARATH Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
147768261553 hypothetical protein VITISV_028754 [Viti 0.978 0.839 0.872 0.0
359493952533 PREDICTED: probable galacturonosyltransf 0.976 0.868 0.874 0.0
356549823533 PREDICTED: probable galacturonosyltransf 0.976 0.868 0.868 0.0
356543946533 PREDICTED: probable galacturonosyltransf 0.976 0.868 0.866 0.0
224126287533 glycosyltransferase, CAZy family GT8 [Po 0.976 0.868 0.863 0.0
145408196533 secondary wall-associated glycosyltransf 0.976 0.868 0.861 0.0
357452677541 Glycosyltransferase CAZy family GT8 [Med 0.978 0.857 0.855 0.0
356514978558 PREDICTED: probable galacturonosyltransf 0.978 0.831 0.859 0.0
388502728541 unknown [Medicago truncatula] 0.978 0.857 0.853 0.0
449470415535 PREDICTED: probable galacturonosyltransf 0.976 0.865 0.862 0.0
>gi|147768261|emb|CAN78125.1| hypothetical protein VITISV_028754 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/464 (87%), Positives = 442/464 (95%)

Query: 11  NSCLGKRLGPRILGRRPQSTVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKS 70
           + CLGKRLGPRILG R +S VPEV+YQIL+EP SKDE++GR DIPQTLEEF A++KES+S
Sbjct: 90  SGCLGKRLGPRILGGRHESPVPEVMYQILDEPASKDEIQGRDDIPQTLEEFTAEVKESRS 149

Query: 71  DAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAAR 130
           DA+ FAIKLR MVTL+EQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNA AR
Sbjct: 150 DARAFAIKLRAMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNANAR 209

Query: 131 LQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYP 190
           LQLPSAELVP LVDNSYFH+VLASDN+LA SVVA+SL++N+L P K+VLHIITDRKTY P
Sbjct: 210 LQLPSAELVPYLVDNSYFHFVLASDNILAASVVASSLIRNALRPHKVVLHIITDRKTYSP 269

Query: 191 MQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTE 250
           MQAWFSLHPLSPAIIEVK L HFDWF+KGKVPVLEAMEKDQRVR+QFRGGSSAIVANNTE
Sbjct: 270 MQAWFSLHPLSPAIIEVKGLHHFDWFTKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTE 329

Query: 251 KPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNG 310
           KPYVIAAKLQALSPKYNS+MNHIRIHLPE+FPSLNK+VFLDDD+VVQTDL+PLWDIDM G
Sbjct: 330 KPYVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKIVFLDDDIVVQTDLTPLWDIDMEG 389

Query: 311 KVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNI 370
           KVNGAV TCRGDDKFVMSK LKSYLNFSHPLI++NFDPNECAWAYGMNIFDLEAWRKTNI
Sbjct: 390 KVNGAVETCRGDDKFVMSKRLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNI 449

Query: 371 SQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAES 430
           S+TYH WL++NLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ+NTS ADAES
Sbjct: 450 SRTYHSWLQENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQDNTSLADAES 509

Query: 431 AGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 474
           AGV+HFNGRAKPWL+IAFP+LRPLW+KY++FSDKFIKSCHIRAS
Sbjct: 510 AGVVHFNGRAKPWLEIAFPQLRPLWAKYVDFSDKFIKSCHIRAS 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493952|ref|XP_002282637.2| PREDICTED: probable galacturonosyltransferase 12-like [Vitis vinifera] gi|302143207|emb|CBI20502.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549823|ref|XP_003543290.1| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|356543946|ref|XP_003540419.1| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224126287|ref|XP_002319802.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222858178|gb|EEE95725.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145408196|gb|ABP65660.1| secondary wall-associated glycosyltransferase family 8D [Populus tremula x Populus alba] Back     alignment and taxonomy information
>gi|357452677|ref|XP_003596615.1| Glycosyltransferase CAZy family GT8 [Medicago truncatula] gi|355485663|gb|AES66866.1| Glycosyltransferase CAZy family GT8 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356514978|ref|XP_003526178.1| PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|388502728|gb|AFK39430.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449470415|ref|XP_004152912.1| PREDICTED: probable galacturonosyltransferase 12-like [Cucumis sativus] gi|449521279|ref|XP_004167657.1| PREDICTED: probable galacturonosyltransferase 12-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2157543535 GAUT12 "galacturonosyltransfer 0.981 0.869 0.824 2.8e-215
TAIR|locus:2180947532 GAUT14 "galacturonosyltransfer 0.970 0.864 0.568 4.3e-148
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.970 0.863 0.574 1.2e-147
TAIR|locus:2099049540 GAUT15 "galacturonosyltransfer 0.953 0.837 0.425 1.9e-99
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.795 0.674 0.430 7.7e-87
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.803 0.710 0.401 4.4e-84
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.827 0.576 0.410 4.4e-84
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.666 0.563 0.463 1.4e-80
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.556 0.5 0.339 2.2e-78
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.440 0.342 0.4 1.6e-67
TAIR|locus:2157543 GAUT12 "galacturonosyltransferase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2080 (737.3 bits), Expect = 2.8e-215, P = 2.8e-215
 Identities = 384/466 (82%), Positives = 429/466 (92%)

Query:    10 SNSCLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKES 68
             S +CLGKRL P++LGRR  S  VPE +YQ+LE+P+S+ ELKGRSDIPQTL++FM+++K S
Sbjct:    70 SLACLGKRLKPKLLGRRVDSGNVPEAMYQVLEQPLSEQELKGRSDIPQTLQDFMSEVKRS 129

Query:    69 KSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAA 128
             KSDA+ FA KL++MVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLAL+LANEHS NAA
Sbjct:   130 KSDAREFAQKLKEMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALKLANEHSINAA 189

Query:   129 ARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTY 188
             ARLQLP AELVP LVDN+YFH+VLASDN+LA SVVA SLV+N+L P KIVLHIITDRKTY
Sbjct:   190 ARLQLPEAELVPMLVDNNYFHFVLASDNILAASVVAKSLVQNALRPHKIVLHIITDRKTY 249

Query:   189 YPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANN 248
             +PMQAWFSLHPLSPAIIEVKAL HFDW SKGKVPVLEAMEKDQRVR+QFRGGSS IVANN
Sbjct:   250 FPMQAWFSLHPLSPAIIEVKALHHFDWLSKGKVPVLEAMEKDQRVRSQFRGGSSVIVANN 309

Query:   249 TEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDM 308
              E P V+AAKLQALSPKYNSLMNHIRIHLPE+FPSLNKVVFLDDD+V+QTDLSPLWDIDM
Sbjct:   310 KENPVVVAAKLQALSPKYNSLMNHIRIHLPELFPSLNKVVFLDDDIVIQTDLSPLWDIDM 369

Query:   309 NGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKT 368
             NGKVNGAV TCRG+DKFVMSK  KSYLNFS+P I++NF+P ECAWAYGMN+FDL AWR+T
Sbjct:   370 NGKVNGAVETCRGEDKFVMSKKFKSYLNFSNPTIAKNFNPEECAWAYGMNVFDLAAWRRT 429

Query:   369 NISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADA 428
             NIS TY++WL++NLKSDLSLWQLGTLPPGLIAFHGHV  IDPFWHMLGLGYQE TS+ADA
Sbjct:   430 NISSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWHMLGLGYQETTSYADA 489

Query:   429 ESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 474
             ESA V+HFNGRAKPWLDIAFP LRPLW+KY++ SD+FIKSCHIRAS
Sbjct:   490 ESAAVVHFNGRAKPWLDIAFPHLRPLWAKYLDSSDRFIKSCHIRAS 535
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP
GO:0045492 "xylan biosynthetic process" evidence=RCA;TAS
GO:0071555 "cell wall organization" evidence=IMP
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA;IMP
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010089 "xylem development" evidence=RCA
GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA
TAIR|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099049 GAUT15 "galacturonosyltransferase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FH36GAUTC_ARATH2, ., 4, ., 1, ., -0.82400.98100.8691yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027429001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (533 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
     •  0.899
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
     •  0.899
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
     •  0.899
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
     •  0.899
GSVIVG00033942001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)
     •  0.899
GSVIVG00031642001
SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (451 aa)
     •  0.899
GSVIVG00028034001
RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)
     •  0.899
GSVIVG00026410001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (418 aa)
     •  0.899
GSVIVG00026388001
RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)
     •  0.899
GSVIVG00022688001
RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 0.0
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 0.0
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 1e-164
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-138
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 1e-136
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-132
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-118
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 2e-98
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 1e-96
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 5e-82
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 4e-65
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 1e-20
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 1e-12
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 3e-10
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 4e-05
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  924 bits (2390), Expect = 0.0
 Identities = 412/463 (88%), Positives = 442/463 (95%), Gaps = 1/463 (0%)

Query: 13  CLGKRLGPRILGRRPQS-TVPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSD 71
           CLGKRLGPRILGRR  S  VPEV+YQ+LE+P+S DELKGRSDIPQTLEEFM ++K S+SD
Sbjct: 72  CLGKRLGPRILGRRLDSANVPEVMYQVLEQPLSNDELKGRSDIPQTLEEFMDEVKNSRSD 131

Query: 72  AKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARL 131
           A+ FA+KLR+MVTL+EQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARL
Sbjct: 132 ARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARL 191

Query: 132 QLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPM 191
           QLP AELVPALVDNSYFH+VLASDN+LA SVVA SLV+N+L P K VLHIITDRKTY PM
Sbjct: 192 QLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPM 251

Query: 192 QAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEK 251
           QAWFSLHPLSPAIIEVKAL HFDWF+KGKVPVLEAMEKDQRVR+QFRGGSSAIVANNTEK
Sbjct: 252 QAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEK 311

Query: 252 PYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGK 311
           P+VIAAKLQALSPKYNS+MNHIRIHLPE+FPSLNKVVFLDDD+VVQTDLSPLWDIDMNGK
Sbjct: 312 PHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGK 371

Query: 312 VNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNIS 371
           VNGAV TCRG+DKFVMSK LKSYLNFSHPLI++NFDPNECAWAYGMNIFDLEAWRKTNIS
Sbjct: 372 VNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNIS 431

Query: 372 QTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESA 431
            TYH+WLE+NLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTS ADAESA
Sbjct: 432 STYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESA 491

Query: 432 GVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS 474
           GV+HFNGRAKPWLDIAFP+LRPLW+KYI+ SDKFIKSCHIRAS
Sbjct: 492 GVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIRAS 534

Length = 534
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.94
PLN00176333 galactinol synthase 99.92
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.76
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.27
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 97.8
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 96.22
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 89.89
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 85.3
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2e-132  Score=1037.59  Aligned_cols=468  Identities=88%  Similarity=1.380  Sum_probs=442.6

Q ss_pred             ccCCccccccccCCccccCCCCCC-hHHHHHHHHhCccccccCCCCCChhhhHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 011974            7 WHLSNSCLGKRLGPRILGRRPQST-VPEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTL   85 (474)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~   85 (474)
                      -|||+||+|||+||||+||++++. +++|++|+|.||++.+|+|.+.++|+++++++.+|++.+|||.+|++|||||+++
T Consensus        66 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~  145 (534)
T PLN02659         66 KCSTLGCLGKRLGPRILGRRLDSANVPEVMYQVLEQPLSNDELKGRSDIPQTLEEFMDEVKNSRSDARAFALKLREMVTL  145 (534)
T ss_pred             ccccccccccccCcccccCCCcccccHHHHHHHHHhhhcccccCCccccchHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            699999999999999999999998 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhhhhhHhHHHHhhchHhhhcCCCccccccccCCCcceEEEeeCCCcchHHHHH
Q 011974           86 MEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVAT  165 (474)
Q Consensus        86 ~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihIv~~sDn~la~sV~I~  165 (474)
                      +|||++++|+|+.++.||||+|+|||||||+||||+|||+++++++++|++|..|+|+||+++|+|++|||+||+||||+
T Consensus       146 ~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvn  225 (534)
T PLN02659        146 LEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVAN  225 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchhHHhhhhccceeEEeecCccccc
Q 011974          166 SLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIV  245 (474)
Q Consensus       166 Sil~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~L~~l~~~~~~~~~F~~~~~~~~  245 (474)
                      |++.|+++|+++|||||||++|+.+|++||++|++++|+|||+++|+|+|++.+++|+|+|+++...++++|+.++..+.
T Consensus       226 Stv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~  305 (534)
T PLN02659        226 SLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIV  305 (534)
T ss_pred             hhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986654444


Q ss_pred             ccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCCCCCeEEEEecCeeeecCchhhhhcCCCCCeeEeeecccCCCcc
Q 011974          246 ANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKF  325 (474)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp~ldKVLYLD~DvIV~~DL~eLw~~Dl~g~~iaAV~d~~~~~~~  325 (474)
                      .++..+|+....+++.++|+|+|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||...+.+
T Consensus       306 ~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~  385 (534)
T PLN02659        306 ANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKF  385 (534)
T ss_pred             cccccCccccccccccCCccceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccch
Confidence            55666676566788889999999999999999999999999999999999999999999999999999999999653322


Q ss_pred             cchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhccCCCccCCcCCCchhhhhcCCcE
Q 011974          326 VMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHGHV  405 (474)
Q Consensus       326 ~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~~~~~~~dqd~Ln~~l~~f~~~i  405 (474)
                      ++.+++++|++|++|.+...|+++.||||+|||||||++||++++++++++|++++.++++.+||||+||++|++|+|++
T Consensus       386 ~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v  465 (534)
T PLN02659        386 VMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHV  465 (534)
T ss_pred             hhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCE
Confidence            23477889999999999889999999999999999999999999999999999987655689999999999999999999


Q ss_pred             EEeCCccccccCCCCCCccccccCCCeEEEecCCCCCccCCCCCCCHHHHHHHHccchhhhhhccCCCC
Q 011974          406 HVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKFIKSCHIRAS  474 (474)
Q Consensus       406 ~~L~~~WN~~~lg~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~~Yl~~~~~~l~~c~~~~~  474 (474)
                      ++||++||++++||+.+...+.+++|+||||+|++|||++++.++|+++|.+|++++++|||+|||+|+
T Consensus       466 ~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~~~  534 (534)
T PLN02659        466 HVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIRAS  534 (534)
T ss_pred             EECChhheecCCcccccccccccCCcEEEEECCCCCccccccCCcchhHHHHHhccCCHHHHhcCCCCC
Confidence            999999999999998766667789999999999999999999999999999999999999999999985

>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 1e-05
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 3e-05
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 262 LSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRG 321
           L+ ++ S+  + R+ L E     +KV++LD D++V+  L+PLWD D+     GA      
Sbjct: 74  LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACI---- 129
Query: 322 DDKFV-MSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQ 380
            D FV   +  K  +  +           E  +  G+ + +L+ WR+ +I +    W+EQ
Sbjct: 130 -DLFVERQEGYKQKIGMA---------DGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQ 179
Query: 381 NLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ-ENTSFADAES--------- 430
               D+  +Q   +  GL  F G V   +  ++ +   Y      FA   +         
Sbjct: 180 --YKDVMQYQDEDILNGL--FKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTN 235
Query: 431 ----AGVIHFNGRAKPW 443
                 V H+ G AKPW
Sbjct: 236 TVMPVAVSHYCGPAKPW 252
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 1e-49
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  171 bits (434), Expect = 1e-49
 Identities = 56/336 (16%), Positives = 106/336 (31%), Gaps = 82/336 (24%)

Query: 149 HYVLASDN--VLATSVVATSLVKNSLHPAKIVLHIITDR---KTYYPMQAWFSLHPLSPA 203
             V A+D+       V A S+        +I  H++           + A       +  
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 204 IIEVKALQHFDWFSKGKVPVLEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALS 263
            I+V   + F  F                                             L+
Sbjct: 61  FIDVNP-EDFAGFP--------------------------------------------LN 75

Query: 264 PKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDD 323
            ++ S+  + R+ L E     +KV++LD D++V+  L+PLWD D+     GA      D 
Sbjct: 76  IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI----DL 131

Query: 324 KFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLK 383
                +  K  +  +           E  +  G+ + +L+ WR+ +I +    W+EQ   
Sbjct: 132 FVERQEGYKQKIGMADG---------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQY-- 180

Query: 384 SDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADA--------------E 429
            D+  +Q   +      F G V   +  ++ +   Y    ++  +               
Sbjct: 181 KDVMQYQDQDILN--GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVM 238

Query: 430 SAGVIHFNGRAKPWLDIAFPKLRPLWSKYINFSDKF 465
              V H+ G AKPW           +++        
Sbjct: 239 PVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTV 274
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.94
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.92
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=2.9e-47  Score=378.76  Aligned_cols=259  Identities=16%  Similarity=0.199  Sum_probs=183.2

Q ss_pred             CcceEEEeeCCCc--chHHHHHHHHHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchh
Q 011974          146 SYFHYVLASDNVL--ATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPV  223 (474)
Q Consensus       146 ~~ihIv~~sDn~l--a~sV~I~Sil~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~  223 (474)
                      -.+|||+++|+.|  +++|+|+|++.|+++ ++++|||++++++.+.++..                             
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L-----------------------------   53 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDL-----------------------------   53 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHH-----------------------------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHH-----------------------------
Confidence            4589999999877  599999999999986 67999999999998765421                             


Q ss_pred             HHhhhhccceeEEeecCcccccccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCC-CCCeEEEEecCeeeecCchh
Q 011974          224 LEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFP-SLNKVVFLDDDLVVQTDLSP  302 (474)
Q Consensus       224 L~~l~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp-~ldKVLYLD~DvIV~~DL~e  302 (474)
                       +++.......+.|....          ++.+. .+  ...+++|..+|+||++|++|| +++||||||+|+||++||++
T Consensus        54 -~~~~~~~~~~i~~~~~~----------~~~~~-~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~  119 (276)
T 3tzt_A           54 -GEDLKKFSYTLYPIRAT----------DDLFS-FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDD  119 (276)
T ss_dssp             -HHHHHTTTCEEEEEECC--------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHH
T ss_pred             -HHHHHHcCCEEEEEEeC----------HHHHh-cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHH
Confidence             11111112233443211          11111 11  123578999999999999999 79999999999999999999


Q ss_pred             hhhcCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhc
Q 011974          303 LWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNL  382 (474)
Q Consensus       303 Lw~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~  382 (474)
                      ||++|++|+++|||+||....    ..+..+..         ++++..+|||||||||||++||+.+++++++++++++.
T Consensus       120 L~~~dl~~~~~aav~d~~~~~----~~~~~~~~---------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~  186 (276)
T 3tzt_A          120 LLRTDISDYILAAASHTGKTD----MANNVNRI---------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH  186 (276)
T ss_dssp             HHTCCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-
T ss_pred             HhhcCCCCCeEEEEEecccch----HHHHHHHh---------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc
Confidence            999999999999999986431    01111111         23344599999999999999999999999999999875


Q ss_pred             cCCCccCCcCCCchhhhhcCCcEEEeCC-ccccccCCCCC------C--cc-ccccCCCeEEEecCCCCCccCCCCCCCH
Q 011974          383 KSDLSLWQLGTLPPGLIAFHGHVHVIDP-FWHMLGLGYQE------N--TS-FADAESAGVIHFNGRAKPWLDIAFPKLR  452 (474)
Q Consensus       383 ~~~~~~~dqd~Ln~~l~~f~~~i~~L~~-~WN~~~lg~~~------~--~~-~~~~~~~~IIHy~G~~KPW~~~~~~~y~  452 (474)
                      . .+.+.|||.||   .+|++++++||. +||+++. +..      .  .+ .+..++|+||||+|..|||...+.++|+
T Consensus       187 ~-~~~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~  261 (276)
T 3tzt_A          187 M-NLLLPDQDILN---AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFT  261 (276)
T ss_dssp             --------CHHHH---HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTH
T ss_pred             c-cccCCChhHHH---HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchH
Confidence            3 46788999776   789999999998 9999862 210      1  11 1245689999999999999999889999


Q ss_pred             HHHHHHHccchhhh
Q 011974          453 PLWSKYINFSDKFI  466 (474)
Q Consensus       453 ~~W~~Yl~~~~~~l  466 (474)
                      ++||+|++..+++|
T Consensus       262 ~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          262 SLYKHYMSLTKRYL  275 (276)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999987
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-24
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 5e-04
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 31/217 (14%)

Query: 258 KLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVA 317
               L+ ++ S+  + R+ L E     +KV++LD D++V+  L+PLWD D+     GA  
Sbjct: 70  AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI 129

Query: 318 TCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYW 377
               D      +  K  +  +      N          G+ + +L+ WR+ +I +    W
Sbjct: 130 ----DLFVERQEGYKQKIGMADGEYYFN---------AGVLLINLKKWRRHDIFKMSSEW 176

Query: 378 LEQNLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFA----------- 426
           +EQ  K  +       L      F G V   +  ++ +   Y    ++            
Sbjct: 177 VEQY-KDVMQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRD 232

Query: 427 ---DAESAGVIHFNGRAKPWLDIAFPKLRPLWSKYIN 460
                    V H+ G AKPW           +++   
Sbjct: 233 RTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.93
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 91.55
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 83.03
d1fo8a_343 N-acetylglucosaminyltransferase I {Rabbit (Oryctol 82.49
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=1.6e-43  Score=348.19  Aligned_cols=253  Identities=22%  Similarity=0.304  Sum_probs=192.4

Q ss_pred             ceEEEeeCCCc--chHHHHHHHHHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchhHH
Q 011974          148 FHYVLASDNVL--ATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLE  225 (474)
Q Consensus       148 ihIv~~sDn~l--a~sV~I~Sil~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~L~  225 (474)
                      ||||+++|+.|  +++|+|+|++.|+++ .+++|||++++++.+..+.....            ++              
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~------------~~--------------   53 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN------------LR--------------   53 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT------------SG--------------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH------------HH--------------
Confidence            69999999877  588999999998876 67999999999998775531110            00              


Q ss_pred             hhhhccceeEEeecCcccccccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCCCCCeEEEEecCeeeecCchhhhh
Q 011974          226 AMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWD  305 (474)
Q Consensus       226 ~l~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp~ldKVLYLD~DvIV~~DL~eLw~  305 (474)
                          .....+.|....          +..+ ... ....+++|.++|+||++|++||+++||||||+||||.+||++||+
T Consensus        54 ----~~~~~i~~~~~~----------~~~~-~~~-~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~  117 (282)
T d1ga8a_          54 ----GGGGNIRFIDVN----------PEDF-AGF-PLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWD  117 (282)
T ss_dssp             ----GGTTTEEEEECC----------GGGG-TTS-CCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHT
T ss_pred             ----HcCCeEEEEECC----------chHh-ccc-cccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHh
Confidence                001122333211          0000 000 123467899999999999999999999999999999999999999


Q ss_pred             cCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhccCC
Q 011974          306 IDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSD  385 (474)
Q Consensus       306 ~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~~~  385 (474)
                      +|++++.+|||.|+....    ...+...++         +.+..+||||||||+|+++||+++++++++++++++.. .
T Consensus       118 ~~~~~~~~aa~~d~~~~~----~~~~~~~~~---------~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~-~  183 (282)
T d1ga8a_         118 TDLGDNWLGASIDLFVER----QEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD-V  183 (282)
T ss_dssp             CCCTTCSEEEEECHHHHT----STTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-T
T ss_pred             cccccceeeeehhhhhhh----hhhhHHHhC---------CCCCCceeecceeeechhhhhhhhHHHHHHHHHHhccc-C
Confidence            999999999999975310    112222333         33467899999999999999999999999999998763 5


Q ss_pred             CccCCcCCCchhhhhcCCcEEEeCCccccccCCCCCC--------c------cccccCCCeEEEecCCCCCccCCCCCCC
Q 011974          386 LSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQEN--------T------SFADAESAGVIHFNGRAKPWLDIAFPKL  451 (474)
Q Consensus       386 ~~~~dqd~Ln~~l~~f~~~i~~L~~~WN~~~lg~~~~--------~------~~~~~~~~~IIHy~G~~KPW~~~~~~~y  451 (474)
                      ..++|||.||   .+|+|++..||.+||++..+|...        .      ..+...+++||||+|+.|||...+.+++
T Consensus       184 ~~~~DQd~LN---~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~  260 (282)
T d1ga8a_         184 MQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWG  260 (282)
T ss_dssp             CSSTHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTT
T ss_pred             cccCchhHHH---HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChh
Confidence            7789999776   789999999999999975432110        0      1234568999999999999998888899


Q ss_pred             HHHHHHHHc
Q 011974          452 RPLWSKYIN  460 (474)
Q Consensus       452 ~~~W~~Yl~  460 (474)
                      ++.|++|..
T Consensus       261 ~~~~~~~~~  269 (282)
T d1ga8a_         261 AERFTELAG  269 (282)
T ss_dssp             THHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999975
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure